HHsearch alignment for GI: 254781176 and conserved domain: cd05294
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.05 E-value=0.19 Score=30.08 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=61.5
Q ss_pred CEEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEE--CCC-----HHHHHHCCC------CEEEEECCCCCCCCCCCCCHHH
Q ss_conf 61799996-681479999999858998449998--255-----788551899------7048515542556788888389
Q gi|254781176|r 15 PRITVFGV-GGGGGNAVNNMVSSGLQGVNFVVA--NTD-----AQALMMSKA------KQIIQLGSGITEGLGAGSHPEV 80 (502)
Q Consensus 15 ~~i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~--ntd-----~~~l~~~~~------~~~~~~g~~~~~g~g~g~~~~~ 80 (502)
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~-~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~----------~~d--- 66 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI----------SSD--- 66 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEE----------CCC---
T ss_conf 98999999976999999999837998-7599960556434231123554503433688767982----------798---
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHCCC----EEEEEEECCCC
Q ss_conf 9999997299999972699899998036766674-------078999999986498----49999504300
Q gi|254781176|r 81 GRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNKGV----LTVGVVTKPFH 140 (502)
Q Consensus 81 g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~~~----~~~~~v~~pf~ 140 (502)
T Consensus 67 ------------~~~~~daDivVitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvtNPvD 125 (309)
T cd05294 67 ------------LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD 125 (309)
T ss_pred ------------HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf ------------89968999999878988995998789999899999999987642699849997689657