Query gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 502
No_of_seqs 294 out of 1577
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 06:53:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781176.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 0 0 941.5 39.3 309 14-322 12-320 (387)
2 TIGR00065 ftsZ cell division p 100.0 0 0 936.5 31.9 309 14-322 17-334 (365)
3 PRK13018 cell division protein 100.0 0 0 876.5 38.3 310 11-322 24-333 (387)
4 cd02201 FtsZ_type1 FtsZ is a G 100.0 0 0 812.7 36.3 304 15-318 1-304 (304)
5 cd02191 FtsZ FtsZ is a GTPase 100.0 0 0 774.4 36.2 303 15-318 1-303 (303)
6 COG0206 FtsZ Cell division GTP 100.0 0 0 724.2 32.4 310 11-321 8-317 (338)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 0 0 592.5 29.5 302 16-322 2-346 (349)
8 smart00864 Tubulin Tubulin/Fts 100.0 5.7E-42 0 329.5 17.0 191 16-208 1-192 (192)
9 smart00865 Tubulin_C Tubulin/F 99.9 6.4E-27 1.6E-31 218.3 14.2 115 210-324 1-116 (120)
10 pfam12327 FtsZ_C FtsZ family, 99.9 1.4E-26 3.5E-31 215.8 12.8 96 225-321 1-96 (97)
11 pfam00091 Tubulin Tubulin/FtsZ 99.9 1.2E-24 3.1E-29 201.5 14.1 170 17-186 1-208 (210)
12 cd00286 Tubulin_FtsZ Tubulin/F 99.8 5.8E-17 1.5E-21 144.7 15.3 293 17-317 2-327 (328)
13 cd06059 Tubulin The tubulin su 99.3 1.3E-11 3.3E-16 105.2 9.6 200 17-222 2-217 (382)
14 cd02188 gamma_tubulin Gamma-tu 99.3 1.1E-10 2.8E-15 98.3 12.5 269 17-291 3-341 (431)
15 cd02186 alpha_tubulin The tubu 99.2 1.9E-10 4.9E-15 96.5 11.1 273 17-291 3-339 (434)
16 PTZ00012 alpha-tubulin II; Pro 99.2 2E-10 5.2E-15 96.3 10.9 206 17-222 4-260 (450)
17 cd02187 beta_tubulin The tubul 99.2 1.6E-10 4E-15 97.1 10.4 205 17-221 3-256 (425)
18 PTZ00010 beta tubulin; Provisi 99.2 4.4E-10 1.1E-14 93.8 12.3 268 17-289 4-336 (443)
19 PTZ00335 alpha tubulin; Provis 99.2 4.4E-10 1.1E-14 93.9 11.4 205 17-221 4-259 (451)
20 PTZ00011 alpha tubulin I; Prov 99.2 4.6E-10 1.2E-14 93.7 10.6 206 17-222 4-260 (453)
21 cd02190 epsilon_tubulin The tu 99.2 2.5E-09 6.4E-14 88.3 14.1 261 17-291 3-294 (379)
22 cd02189 delta_tubulin The tubu 99.1 2.8E-09 7E-14 87.9 12.3 200 17-216 2-247 (446)
23 COG5023 Tubulin [Cytoskeleton] 98.7 1.2E-07 2.9E-12 76.0 9.4 229 59-289 87-336 (443)
24 TIGR03483 FtsZ_alphas_C cell d 98.0 1.1E-06 2.9E-11 68.6 0.6 20 483-502 102-121 (121)
25 KOG1374 consensus 97.9 3.2E-05 8.1E-10 57.9 6.5 163 70-234 96-274 (448)
26 PTZ00082 L-lactate dehydrogena 96.7 0.014 3.5E-07 38.5 8.0 105 14-140 7-133 (322)
27 PRK00066 ldh L-lactate dehydro 96.6 0.03 7.6E-07 36.0 9.4 106 14-140 6-126 (315)
28 PTZ00325 malate dehydrogenase; 96.5 0.034 8.8E-07 35.5 8.9 104 14-139 1-120 (313)
29 PRK05086 malate dehydrogenase; 96.3 0.046 1.2E-06 34.5 8.7 106 15-140 1-122 (312)
30 cd05293 LDH_1 A subgroup of L- 96.2 0.056 1.4E-06 33.9 8.9 106 14-140 3-124 (312)
31 cd01339 LDH-like_MDH L-lactate 95.9 0.064 1.6E-06 33.5 7.9 97 17-140 1-119 (300)
32 cd05292 LDH_2 A subgroup of L- 95.9 0.11 2.8E-06 31.8 9.1 103 16-140 2-120 (308)
33 PRK13937 phosphoheptose isomer 95.8 0.14 3.6E-06 31.0 9.5 118 14-171 42-165 (192)
34 cd00650 LDH_MDH_like NAD-depen 95.8 0.095 2.4E-06 32.3 8.6 73 17-113 1-85 (263)
35 cd05291 HicDH_like L-2-hydroxy 95.8 0.081 2.1E-06 32.8 8.1 105 15-140 1-121 (306)
36 PRK06223 malate dehydrogenase; 95.8 0.19 4.8E-06 30.0 10.0 99 16-140 2-122 (312)
37 PTZ00117 malate dehydrogenase; 95.6 0.06 1.5E-06 33.7 6.9 106 15-140 2-122 (313)
38 pfam00056 Ldh_1_N lactate/mala 95.6 0.087 2.2E-06 32.5 7.6 77 16-113 2-84 (142)
39 cd05006 SIS_GmhA Phosphoheptos 95.5 0.23 5.9E-06 29.4 10.7 118 14-171 33-156 (177)
40 cd05290 LDH_3 A subgroup of L- 95.4 0.12 3.1E-06 31.4 8.0 101 16-140 1-123 (307)
41 cd00704 MDH Malate dehydrogena 95.3 0.09 2.3E-06 32.4 7.0 101 16-140 2-130 (323)
42 cd00300 LDH_like L-lactate deh 95.3 0.23 5.8E-06 29.4 8.9 102 17-140 1-119 (300)
43 cd01337 MDH_glyoxysomal_mitoch 95.2 0.081 2.1E-06 32.8 6.4 102 16-139 2-120 (310)
44 PRK08223 hypothetical protein; 95.1 0.32 8.1E-06 28.4 9.7 112 14-144 27-158 (287)
45 cd05294 LDH-like_MDH_nadp A la 95.1 0.19 4.7E-06 30.1 7.9 100 15-140 1-125 (309)
46 COG0039 Mdh Malate/lactate deh 95.0 0.077 2E-06 32.9 6.0 237 15-307 1-260 (313)
47 cd01338 MDH_choloroplast_like 95.0 0.095 2.4E-06 32.3 6.3 231 16-307 4-272 (322)
48 pfam00899 ThiF ThiF family. Th 95.0 0.25 6.3E-06 29.2 8.4 107 15-135 2-123 (134)
49 KOG2013 consensus 94.9 0.097 2.5E-06 32.2 6.2 54 14-67 12-66 (603)
50 pfam05368 NmrA NmrA-like famil 94.5 0.43 1.1E-05 27.4 15.8 102 17-138 1-104 (232)
51 PRK03806 murD UDP-N-acetylmura 94.2 0.44 1.1E-05 27.3 8.1 32 14-48 6-37 (438)
52 cd01483 E1_enzyme_family Super 93.9 0.56 1.4E-05 26.6 8.9 104 16-139 1-125 (143)
53 TIGR01771 L-LDH-NAD L-lactate 93.8 0.28 7.1E-06 28.8 6.6 89 19-164 1-101 (302)
54 PRK00421 murC UDP-N-acetylmura 93.3 0.49 1.2E-05 27.0 7.1 23 16-38 10-33 (459)
55 COG1179 Dinucleotide-utilizing 93.1 0.14 3.6E-06 30.9 4.1 36 10-45 25-61 (263)
56 PRK00414 gmhA phosphoheptose i 92.9 0.8 2E-05 25.4 9.2 117 14-171 44-166 (192)
57 PRK13508 tagatose-6-phosphate 92.8 0.83 2.1E-05 25.3 11.5 166 10-198 46-216 (309)
58 PRK11880 pyrroline-5-carboxyla 92.6 0.88 2.2E-05 25.1 9.6 199 15-232 3-239 (267)
59 TIGR02356 adenyl_thiF thiazole 92.5 0.43 1.1E-05 27.4 5.9 53 11-67 18-70 (210)
60 PRK13938 phosphoheptose isomer 92.4 0.94 2.4E-05 24.9 8.8 118 14-171 45-168 (196)
61 PRK00141 murD UDP-N-acetylmura 92.0 1 2.6E-05 24.6 8.5 37 11-50 14-50 (476)
62 cd01489 Uba2_SUMO Ubiquitin ac 91.3 0.41 1E-05 27.5 4.7 46 16-65 1-46 (312)
63 KOG1376 consensus 91.3 0.13 3.4E-06 31.2 2.2 149 75-223 104-260 (407)
64 cd01336 MDH_cytoplasmic_cytoso 91.2 0.78 2E-05 25.5 6.0 106 16-141 4-133 (325)
65 PRK06249 2-dehydropantoate 2-r 91.1 1.1 2.8E-05 24.4 6.7 43 12-56 3-45 (313)
66 PRK13936 phosphoheptose isomer 91.1 1.2 3.2E-05 24.0 10.0 122 14-172 43-170 (197)
67 PRK05442 malate dehydrogenase; 91.1 0.66 1.7E-05 26.0 5.5 106 16-141 6-135 (325)
68 PRK07502 cyclohexadienyl dehyd 91.0 0.6 1.5E-05 26.3 5.3 68 16-107 8-75 (307)
69 cd01488 Uba3_RUB Ubiquitin act 91.0 0.47 1.2E-05 27.1 4.7 46 16-65 1-46 (291)
70 TIGR03471 HpnJ hopanoid biosyn 90.7 0.84 2.2E-05 25.2 5.8 149 132-290 210-366 (472)
71 PTZ00306 NADH-dependent fumara 90.2 0.5 1.3E-05 26.9 4.3 97 12-110 407-522 (1167)
72 cd00757 ThiF_MoeB_HesA_family 90.2 0.56 1.4E-05 26.6 4.5 107 13-132 20-140 (228)
73 PTZ00286 6-phospho-1-fructokin 90.0 1.6 4E-05 23.3 7.0 192 90-320 177-389 (486)
74 PRK05690 molybdopterin biosynt 89.9 0.46 1.2E-05 27.2 3.9 106 12-130 30-149 (245)
75 cd05298 GH4_GlvA_pagL_like Gly 89.8 0.8 2E-05 25.4 5.1 99 16-130 2-103 (437)
76 COG4565 CitB Response regulato 89.8 1.6 4.1E-05 23.2 8.8 106 30-160 15-123 (224)
77 KOG2015 consensus 89.7 0.73 1.9E-05 25.7 4.8 57 10-66 35-93 (422)
78 PRK01710 murD UDP-N-acetylmura 89.7 1.6 4.2E-05 23.1 8.1 31 14-47 14-44 (458)
79 KOG1495 consensus 89.6 1 2.6E-05 24.6 5.5 145 14-224 20-177 (332)
80 cd01484 E1-2_like Ubiquitin ac 89.5 0.8 2E-05 25.4 4.9 32 16-49 1-32 (234)
81 cd05297 GH4_alpha_glucosidase_ 88.9 0.38 9.8E-06 27.8 2.9 142 15-178 1-147 (423)
82 PRK12475 thiamine/molybdopteri 88.6 1.4 3.5E-05 23.7 5.5 107 12-132 22-145 (337)
83 PRK07688 thiamine/molybdopteri 88.5 1.9 5E-05 22.5 6.6 107 12-131 22-144 (339)
84 cd01491 Ube1_repeat1 Ubiquitin 88.2 2 5.2E-05 22.4 7.4 67 14-95 19-85 (286)
85 PRK02947 hypothetical protein; 87.9 2.1 5.4E-05 22.3 6.7 154 16-201 43-211 (247)
86 PRK04308 murD UDP-N-acetylmura 87.8 2.1 5.4E-05 22.3 7.6 120 15-140 6-150 (445)
87 PRK00683 murD UDP-N-acetylmura 87.8 2.2 5.5E-05 22.2 6.2 39 14-55 3-41 (418)
88 PRK07232 malic enzyme; Reviewe 87.7 1.8 4.6E-05 22.8 5.7 127 14-159 186-354 (753)
89 PRK09932 glycerate kinase II; 87.6 2.2 5.6E-05 22.2 7.9 95 91-205 277-374 (381)
90 PRK07878 molybdopterin biosynt 87.6 1.6 4.1E-05 23.2 5.4 107 12-132 40-161 (392)
91 PRK08762 molybdopterin biosynt 87.5 2.1 5.3E-05 22.4 5.9 26 17-42 62-87 (379)
92 cd05005 SIS_PHI Hexulose-6-pho 87.4 2.3 5.8E-05 22.1 10.0 95 14-171 33-130 (179)
93 TIGR03168 1-PFK 1-phosphofruct 87.3 2.3 5.8E-05 22.0 13.4 163 18-198 30-214 (303)
94 cd01486 Apg7 Apg7 is an E1-lik 87.2 2.3 5.9E-05 22.0 6.7 70 16-95 1-70 (307)
95 PRK06545 prephenate dehydrogen 87.0 1.9 4.8E-05 22.7 5.5 69 16-108 2-70 (357)
96 TIGR01813 flavo_cyto_c flavocy 87.0 2 5.1E-05 22.5 5.6 256 17-308 2-342 (487)
97 cd00755 YgdL_like Family of ac 86.9 0.68 1.7E-05 25.9 3.2 35 14-50 11-45 (231)
98 PRK08328 hypothetical protein; 86.0 1.1 2.7E-05 24.4 3.8 107 13-132 26-147 (230)
99 pfam03446 NAD_binding_2 NAD bi 85.8 2.1 5.5E-05 22.2 5.2 64 15-106 2-65 (163)
100 pfam01488 Shikimate_DH Shikima 85.7 2.3 5.8E-05 22.0 5.3 69 14-106 12-83 (134)
101 cd05013 SIS_RpiR RpiR-like pro 85.7 2.7 6.9E-05 21.5 10.7 59 95-171 57-115 (139)
102 PRK02006 murD UDP-N-acetylmura 85.7 2.7 7E-05 21.5 8.0 32 14-48 7-38 (501)
103 cd01487 E1_ThiF_like E1_ThiF_l 85.5 1.9 4.8E-05 22.6 4.8 37 16-54 1-37 (174)
104 PRK10342 glycerate kinase I; P 85.5 2.8 7.1E-05 21.4 7.5 98 91-209 277-377 (381)
105 cd01485 E1-1_like Ubiquitin ac 85.2 2.4 6E-05 21.9 5.2 107 13-132 18-142 (198)
106 PRK07634 pyrroline-5-carboxyla 85.0 1.9 4.8E-05 22.7 4.6 184 14-228 4-238 (245)
107 PRK10430 DNA-binding transcrip 85.0 2.9 7.5E-05 21.2 9.1 102 36-162 22-128 (239)
108 KOG1375 consensus 84.3 0.48 1.2E-05 27.0 1.3 171 102-291 78-262 (369)
109 PRK09224 threonine dehydratase 84.1 3.2 8.1E-05 21.0 9.7 174 91-308 161-341 (504)
110 PRK05441 murQ N-acetylmuramic 84.0 1.8 4.6E-05 22.8 4.2 81 53-139 75-165 (273)
111 cd01492 Aos1_SUMO Ubiquitin ac 83.3 1.8 4.7E-05 22.7 4.0 48 13-64 20-67 (197)
112 PRK12491 pyrroline-5-carboxyla 83.0 3.1 7.8E-05 21.1 5.0 192 14-234 2-243 (272)
113 TIGR01362 KDO8P_synth 3-deoxy- 82.7 0.36 9.2E-06 28.0 0.2 14 488-501 94-107 (279)
114 cd05007 SIS_Etherase N-acetylm 82.6 1.5 3.8E-05 23.4 3.3 81 54-140 67-157 (257)
115 PRK05600 thiamine biosynthesis 82.4 2.4 6E-05 21.9 4.3 49 13-65 40-88 (370)
116 PRK07680 late competence prote 82.3 3.3 8.5E-05 20.8 5.0 194 16-232 2-239 (273)
117 cd01164 FruK_PfkB_like 1-phosp 82.3 3.7 9.5E-05 20.5 13.9 114 17-133 30-163 (289)
118 cd06304 PBP1_BmpA_like Peripla 82.1 3.8 9.6E-05 20.4 5.5 40 88-134 45-85 (260)
119 cd06354 PBP1_BmpA_PnrA_like Pe 82.0 3.8 9.7E-05 20.4 5.4 33 89-128 47-80 (265)
120 PRK08644 thiamine biosynthesis 81.7 1.5 3.9E-05 23.3 3.1 106 13-133 26-147 (209)
121 KOG0370 consensus 81.5 4 0.0001 20.3 5.5 43 10-55 373-426 (1435)
122 PRK07411 hypothetical protein; 81.0 3.6 9.2E-05 20.6 4.8 106 13-132 37-157 (390)
123 pfam01210 NAD_Gly3P_dh_N NAD-d 80.9 4.1 0.00011 20.1 10.1 76 16-106 2-78 (159)
124 pfam02558 ApbA Ketopantoate re 80.8 3.8 9.6E-05 20.4 4.8 126 17-150 1-138 (150)
125 pfam03435 Saccharop_dh Sacchar 80.7 4.2 0.00011 20.1 5.6 93 17-133 1-96 (384)
126 PRK12570 N-acetylmuramic acid- 80.4 3.2 8.2E-05 20.9 4.4 80 53-138 75-164 (296)
127 PRK07417 arogenate dehydrogena 80.4 4.3 0.00011 20.0 5.3 81 15-127 2-82 (280)
128 PRK06129 3-hydroxyacyl-CoA deh 80.3 0.78 2E-05 25.5 1.2 84 16-103 4-87 (308)
129 TIGR00274 TIGR00274 glucokinas 80.2 3.4 8.7E-05 20.8 4.4 82 51-140 72-165 (291)
130 PRK07334 threonine dehydratase 80.0 1 2.7E-05 24.6 1.8 52 91-152 161-214 (399)
131 KOG2018 consensus 80.0 2.3 5.8E-05 22.0 3.5 38 16-55 76-113 (430)
132 PRK03673 competence damage-ind 79.8 4.5 0.00011 19.9 6.3 64 45-125 18-87 (396)
133 CHL00194 ycf39 Ycf39; Provisio 79.2 4.6 0.00012 19.8 9.8 100 16-136 2-109 (319)
134 PRK12862 malic enzyme; Reviewe 79.1 4.7 0.00012 19.7 6.8 126 14-159 192-360 (761)
135 PRK01438 murD UDP-N-acetylmura 79.1 4.7 0.00012 19.7 7.4 25 15-39 15-39 (481)
136 cd01168 adenosine_kinase Adeno 79.0 4.7 0.00012 19.7 9.5 141 21-171 53-209 (312)
137 COG0552 FtsY Signal recognitio 78.9 4.3 0.00011 20.0 4.6 60 77-139 105-178 (340)
138 pfam02595 Gly_kinase Glycerate 78.7 4.8 0.00012 19.7 7.0 25 180-204 349-373 (378)
139 cd01357 Aspartatase Aspartase_ 78.3 3.6 9.1E-05 20.6 4.1 169 107-289 91-293 (450)
140 PRK05597 molybdopterin biosynt 77.9 4.1 0.0001 20.2 4.3 48 13-64 27-74 (355)
141 cd05197 GH4_glycoside_hydrolas 77.8 0.55 1.4E-05 26.6 -0.2 140 16-178 2-145 (425)
142 COG0345 ProC Pyrroline-5-carbo 77.5 5.2 0.00013 19.4 6.5 205 15-249 2-254 (266)
143 cd06353 PBP1_BmpA_Med_like Per 77.4 5.2 0.00013 19.4 5.4 22 17-38 2-23 (258)
144 COG4015 Predicted dinucleotide 77.3 5.3 0.00013 19.4 7.8 161 8-182 6-193 (217)
145 PRK08293 3-hydroxybutyryl-CoA 76.8 1.1 2.8E-05 24.4 1.1 38 16-56 5-42 (288)
146 pfam03807 F420_oxidored NADP o 76.7 3.6 9.1E-05 20.6 3.7 24 16-39 1-24 (93)
147 PRK07048 serine/threonine dehy 76.6 5.5 0.00014 19.2 6.5 40 90-134 164-205 (321)
148 PRK07679 pyrroline-5-carboxyla 76.4 5.5 0.00014 19.2 12.3 205 14-248 3-258 (279)
149 cd05213 NAD_bind_Glutamyl_tRNA 76.1 5.6 0.00014 19.1 5.8 28 148-175 90-117 (311)
150 PRK08507 prephenate dehydrogen 76.0 5.7 0.00014 19.1 4.9 41 16-57 2-42 (275)
151 TIGR03127 RuMP_HxlB 6-phospho 75.9 5.7 0.00015 19.1 10.6 92 15-169 31-125 (179)
152 PRK10046 dpiA two-component re 75.7 5.8 0.00015 19.1 8.9 103 36-163 25-130 (225)
153 pfam02056 Glyco_hydro_4 Family 74.7 0.54 1.4E-05 26.7 -0.9 141 16-178 1-146 (183)
154 PRK08229 2-dehydropantoate 2-r 74.6 6.1 0.00016 18.9 5.5 31 14-45 2-32 (341)
155 TIGR02128 G6PI_arch bifunction 74.5 6.2 0.00016 18.8 8.0 96 14-134 27-125 (338)
156 COG0771 MurD UDP-N-acetylmuram 74.1 6.3 0.00016 18.8 8.3 193 14-224 7-232 (448)
157 PRK01215 competence damage-ind 73.8 6.4 0.00016 18.7 6.5 69 45-124 20-88 (264)
158 TIGR01082 murC UDP-N-acetylmur 73.7 6.4 0.00016 18.7 8.4 147 16-169 1-186 (491)
159 PRK12767 carbamoyl phosphate s 73.2 6.6 0.00017 18.6 6.3 90 14-128 1-92 (325)
160 PRK11865 pyruvate ferredoxin o 72.8 6.7 0.00017 18.6 12.5 115 22-145 19-135 (298)
161 TIGR03473 HpnK hopanoid biosyn 72.6 6.8 0.00017 18.5 5.9 189 20-213 11-241 (283)
162 TIGR01826 CofD_related conserv 72.4 3.8 9.6E-05 20.4 2.9 116 107-226 3-144 (331)
163 PRK10886 DnaA initiator-associ 72.1 7 0.00018 18.5 9.7 122 14-172 41-168 (196)
164 pfam01408 GFO_IDH_MocA Oxidore 72.1 7 0.00018 18.5 7.9 94 15-141 1-97 (120)
165 cd01830 XynE_like SGNH_hydrola 72.0 7 0.00018 18.4 6.8 64 61-126 2-68 (204)
166 KOG2337 consensus 71.4 7.2 0.00018 18.3 6.3 39 261-300 415-457 (669)
167 PRK05808 3-hydroxybutyryl-CoA 71.0 2.3 5.8E-05 22.1 1.5 83 16-103 5-87 (282)
168 COG1929 Glycerate kinase [Carb 71.0 7.3 0.00019 18.3 7.8 117 70-206 245-375 (378)
169 COG1748 LYS9 Saccharopine dehy 70.8 7.4 0.00019 18.3 6.6 89 14-130 1-94 (389)
170 pfam06908 DUF1273 Protein of u 70.5 7.5 0.00019 18.2 4.8 78 90-170 33-111 (177)
171 cd01490 Ube1_repeat2 Ubiquitin 70.4 7.5 0.00019 18.2 5.5 51 16-66 1-57 (435)
172 TIGR02355 moeB molybdopterin s 70.2 5.8 0.00015 19.0 3.5 47 6-54 14-62 (240)
173 PRK06476 pyrroline-5-carboxyla 70.2 7.6 0.00019 18.2 10.3 206 16-248 2-250 (255)
174 COG1058 CinA Predicted nucleot 69.9 7.7 0.0002 18.1 4.8 69 45-124 18-86 (255)
175 PRK08674 bifunctional phosphog 69.8 7.8 0.0002 18.1 9.2 97 12-134 30-131 (328)
176 pfam03721 UDPG_MGDP_dh_N UDP-g 69.7 7.8 0.0002 18.1 6.5 40 16-58 2-41 (185)
177 PRK12861 malic enzyme; Reviewe 69.6 7.9 0.0002 18.1 5.9 126 14-159 187-355 (762)
178 PRK08526 threonine dehydratase 69.5 3.9 9.9E-05 20.3 2.5 51 91-151 161-213 (403)
179 TIGR00441 gmhA phosphoheptose 69.4 1.3 3.2E-05 23.9 -0.1 45 14-59 39-90 (186)
180 pfam02608 Bmp Basic membrane p 68.9 8.1 0.00021 18.0 6.0 87 14-133 1-88 (302)
181 COG3535 Uncharacterized conser 68.7 8.2 0.00021 17.9 4.2 91 50-169 7-104 (357)
182 KOG0685 consensus 68.5 8.3 0.00021 17.9 4.9 63 14-79 21-86 (498)
183 KOG2931 consensus 68.3 5.2 0.00013 19.4 2.9 49 85-137 105-153 (326)
184 cd05311 NAD_bind_2_malic_enz N 67.8 8.5 0.00022 17.8 6.2 163 14-206 25-197 (226)
185 COG1893 ApbA Ketopantoate redu 67.8 6 0.00015 19.0 3.1 124 15-147 1-136 (307)
186 COG1224 TIP49 DNA helicase TIP 67.6 8.6 0.00022 17.8 4.5 227 48-304 9-299 (450)
187 COG2519 GCD14 tRNA(1-methylade 67.4 6.6 0.00017 18.7 3.3 41 110-160 101-142 (256)
188 PRK02705 murD UDP-N-acetylmura 67.2 8.7 0.00022 17.7 8.3 116 17-140 3-149 (459)
189 PRK11302 DNA-binding transcrip 66.7 8.9 0.00023 17.7 8.7 98 106-234 38-139 (284)
190 PRK06830 diphosphate--fructose 66.6 9 0.00023 17.7 9.0 135 88-238 159-315 (442)
191 pfam02254 TrkA_N TrkA-N domain 66.5 9 0.00023 17.6 6.1 94 17-139 1-99 (115)
192 pfam11899 DUF3419 Protein of u 66.3 4.7 0.00012 19.7 2.3 67 11-79 31-99 (376)
193 PRK05562 precorrin-2 dehydroge 66.1 9.1 0.00023 17.6 7.9 94 9-133 19-114 (222)
194 PRK07064 hypothetical protein; 65.8 6.9 0.00018 18.5 3.1 32 18-51 20-52 (544)
195 PRK11559 garR tartronate semia 65.7 9.3 0.00024 17.5 4.8 48 176-224 161-209 (295)
196 COG1062 AdhC Zn-dependent alco 65.5 9.3 0.00024 17.5 7.4 22 17-38 189-210 (366)
197 PRK03009 consensus 65.5 4.5 0.00012 19.8 2.2 25 220-246 240-264 (287)
198 COG0773 MurC UDP-N-acetylmuram 65.3 9.5 0.00024 17.5 11.4 198 16-235 9-242 (459)
199 PRK07261 topology modulation p 65.1 6.1 0.00016 18.9 2.8 89 16-140 2-90 (171)
200 TIGR02354 thiF_fam2 thiamine b 65.0 9.4 0.00024 17.5 3.7 28 14-41 21-48 (200)
201 COG2074 2-phosphoglycerate kin 64.9 9.6 0.00024 17.4 6.1 164 73-252 26-240 (299)
202 PRK00549 competence damage-ind 64.6 9.7 0.00025 17.4 6.4 63 45-124 17-85 (413)
203 pfam01262 AlaDh_PNT_C Alanine 64.3 9.8 0.00025 17.4 4.7 89 13-127 18-111 (150)
204 PRK12273 aspA aspartate ammoni 64.3 9.8 0.00025 17.4 3.9 97 180-288 197-299 (471)
205 COG1484 DnaC DNA replication p 64.2 9.9 0.00025 17.3 10.0 129 76-224 83-220 (254)
206 PRK06153 hypothetical protein; 64.0 4.1 0.00011 20.1 1.7 56 258-318 264-320 (393)
207 TIGR02791 VirB5 P-type DNA tra 64.0 1.8 4.7E-05 22.8 -0.1 85 131-231 23-120 (233)
208 PRK06382 threonine dehydratase 64.0 5.3 0.00013 19.4 2.2 52 91-150 160-211 (400)
209 PRK12338 hypothetical protein; 63.9 6.1 0.00016 18.9 2.6 25 108-132 9-33 (320)
210 COG0476 ThiF Dinucleotide-util 63.9 10 0.00025 17.3 5.0 51 11-65 27-77 (254)
211 PRK09496 trkA potassium transp 63.6 10 0.00026 17.3 9.0 98 16-140 2-104 (455)
212 COG4962 CpaF Flp pilus assembl 63.5 7.2 0.00018 18.4 2.9 57 109-165 179-253 (355)
213 TIGR01139 cysK cysteine syntha 63.5 10 0.00026 17.3 3.8 117 15-134 168-298 (312)
214 PRK04663 murD UDP-N-acetylmura 63.2 10 0.00026 17.2 9.6 121 15-139 8-147 (438)
215 PRK06555 pyrophosphate--fructo 62.2 11 0.00027 17.1 8.1 132 98-239 112-273 (403)
216 cd00885 cinA Competence-damage 62.2 11 0.00027 17.1 6.6 37 88-124 48-84 (170)
217 PTZ00301 uridine kinase; Provi 61.7 8.3 0.00021 17.9 2.9 39 105-143 5-47 (210)
218 PRK06928 pyrroline-5-carboxyla 61.5 11 0.00028 17.0 4.7 194 15-231 2-239 (275)
219 PRK07066 3-hydroxybutyryl-CoA 61.4 4.9 0.00013 19.6 1.7 80 16-103 9-88 (321)
220 TIGR00045 TIGR00045 glycerate 60.5 11 0.00029 16.9 7.9 126 61-205 237-378 (380)
221 COG4821 Uncharacterized protei 60.2 12 0.00029 16.8 4.5 134 15-178 39-180 (243)
222 PRK08617 acetolactate synthase 60.1 12 0.00029 16.8 5.7 37 218-254 195-234 (552)
223 PRK12921 2-dehydropantoate 2-r 59.8 12 0.0003 16.8 6.3 39 16-55 2-40 (306)
224 COG1611 Predicted Rossmann fol 59.6 8.6 0.00022 17.8 2.7 85 76-169 27-119 (205)
225 PRK08300 acetaldehyde dehydrog 59.5 12 0.0003 16.8 7.2 95 13-134 3-100 (298)
226 PRK09947 hypothetical protein; 59.4 12 0.0003 16.8 3.5 125 106-236 26-201 (214)
227 PRK08233 hypothetical protein; 59.3 8.7 0.00022 17.7 2.7 25 105-129 5-29 (182)
228 TIGR02995 ectoine_ehuB ectoine 59.2 7.5 0.00019 18.2 2.3 46 110-155 52-102 (285)
229 PRK09260 3-hydroxybutyryl-CoA 58.8 3.7 9.5E-05 20.5 0.7 82 16-104 4-88 (289)
230 PRK06110 hypothetical protein; 58.7 12 0.00031 16.7 3.4 15 120-134 85-99 (321)
231 PRK05329 anaerobic glycerol-3- 58.5 12 0.00031 16.6 7.1 129 17-159 5-163 (425)
232 cd01065 NAD_bind_Shikimate_DH 58.4 9.8 0.00025 17.4 2.8 99 14-140 19-121 (155)
233 cd05296 GH4_P_beta_glucosidase 58.3 3.9 9.9E-05 20.3 0.8 98 16-129 2-103 (419)
234 pfam02737 3HCDH_N 3-hydroxyacy 58.0 5.5 0.00014 19.2 1.5 37 16-55 1-37 (180)
235 KOG1252 consensus 57.9 7.5 0.00019 18.2 2.1 36 107-148 110-145 (362)
236 PRK05708 2-dehydropantoate 2-r 57.9 12 0.00031 16.7 3.2 90 16-109 4-108 (305)
237 PRK03369 murD UDP-N-acetylmura 57.8 13 0.00032 16.6 8.4 119 16-140 14-157 (487)
238 KOG1494 consensus 57.7 13 0.00032 16.6 8.3 229 14-302 28-283 (345)
239 COG0287 TyrA Prephenate dehydr 57.4 13 0.00033 16.5 5.6 41 13-54 2-42 (279)
240 cd06451 AGAT_like Alanine-glyo 57.2 10 0.00026 17.3 2.7 50 197-246 155-209 (356)
241 cd01941 YeiC_kinase_like YeiC- 57.0 13 0.00033 16.5 9.1 134 21-171 33-185 (288)
242 PRK09117 consensus 56.9 4.5 0.00011 19.9 0.9 38 16-56 4-41 (282)
243 TIGR01133 murG undecaprenyldip 56.6 5.2 0.00013 19.4 1.1 194 14-248 4-216 (368)
244 PRK06186 hypothetical protein; 55.7 14 0.00034 16.3 4.2 40 95-135 50-89 (229)
245 cd01844 SGNH_hydrolase_like_6 55.7 14 0.00035 16.3 7.0 147 62-224 3-151 (177)
246 TIGR03378 glycerol3P_GlpB glyc 55.6 14 0.00035 16.3 7.2 206 17-254 3-252 (419)
247 PRK03803 murD UDP-N-acetylmura 55.6 14 0.00035 16.3 9.1 119 16-140 9-149 (448)
248 cd06208 CYPOR_like_FNR These f 55.5 8.6 0.00022 17.8 2.1 22 98-125 135-156 (286)
249 cd01172 RfaE_like RfaE encodes 55.5 14 0.00035 16.3 9.4 110 20-132 37-168 (304)
250 COG3473 Maleate cis-trans isom 55.5 14 0.00035 16.3 5.0 58 70-132 150-208 (238)
251 cd02034 CooC The accessory pro 55.5 14 0.00035 16.3 3.4 36 16-51 1-38 (116)
252 COG1013 PorB Pyruvate:ferredox 55.3 14 0.00035 16.3 4.0 204 19-288 15-226 (294)
253 PRK00343 ipk 4-diphosphocytidy 55.3 14 0.00035 16.3 3.3 25 219-245 229-253 (279)
254 cd01493 APPBP1_RUB Ubiquitin a 55.1 11 0.00029 16.9 2.7 31 14-44 20-50 (425)
255 TIGR01035 hemA glutamyl-tRNA r 55.0 14 0.00035 16.3 6.2 99 14-142 185-299 (436)
256 pfam07082 DUF1350 Protein of u 55.0 13 0.00034 16.4 3.0 52 108-164 22-79 (250)
257 PRK01390 murD UDP-N-acetylmura 55.0 13 0.00034 16.4 3.0 38 9-49 3-41 (457)
258 PRK12339 2-phosphoglycerate ki 54.7 12 0.0003 16.8 2.7 25 108-132 8-32 (197)
259 PRK01184 hypothetical protein; 54.6 13 0.00034 16.4 2.9 19 17-35 4-22 (183)
260 PRK12775 putative trifunctiona 54.5 9.3 0.00024 17.5 2.2 30 98-133 180-209 (993)
261 TIGR01967 DEAH_box_HrpA ATP-de 54.4 11 0.00027 17.1 2.5 216 87-320 72-359 (1320)
262 TIGR00064 ftsY signal recognit 54.3 14 0.00036 16.2 7.6 39 11-50 78-122 (284)
263 TIGR02881 spore_V_K stage V sp 54.3 7.6 0.00019 18.2 1.7 31 99-134 43-76 (261)
264 PRK06718 precorrin-2 dehydroge 54.2 14 0.00036 16.2 6.1 139 14-166 10-167 (202)
265 PRK12778 putative bifunctional 53.9 10 0.00026 17.3 2.3 61 260-320 473-536 (760)
266 pfam07287 DUF1446 Protein of u 53.8 14 0.00037 16.1 3.9 98 24-136 9-107 (362)
267 TIGR01915 npdG NADPH-dependent 53.5 15 0.00037 16.1 5.6 79 56-168 28-109 (233)
268 TIGR01124 ilvA_2Cterm threonin 53.0 15 0.00038 16.0 3.5 176 90-310 160-342 (508)
269 pfam01073 3Beta_HSD 3-beta hyd 52.9 15 0.00038 16.0 6.7 96 21-134 5-113 (280)
270 TIGR01137 cysta_beta cystathio 52.9 15 0.00038 16.0 3.6 48 89-139 164-216 (527)
271 PRK11316 bifunctional heptose 52.7 15 0.00038 16.0 11.0 72 86-176 131-202 (473)
272 COG0120 RpiA Ribose 5-phosphat 52.6 15 0.00038 16.0 4.0 50 82-142 8-59 (227)
273 TIGR03151 enACPred_II putative 52.0 15 0.00039 15.9 5.9 60 92-163 4-63 (307)
274 TIGR02505 RTPR ribonucleoside- 51.7 4.4 0.00011 19.9 0.1 129 101-245 142-272 (827)
275 PRK05703 flhF flagellar biosyn 51.7 16 0.0004 15.9 3.4 48 108-164 215-266 (412)
276 KOG0238 consensus 51.5 12 0.00031 16.7 2.4 46 23-69 7-52 (670)
277 PRK09856 fructoselysine 3-epim 51.5 16 0.0004 15.9 9.7 214 29-249 18-265 (276)
278 COG2243 CobF Precorrin-2 methy 51.4 16 0.0004 15.8 8.0 70 71-151 6-76 (234)
279 PTZ00175 diphthine synthase; P 51.1 16 0.0004 15.8 6.1 51 82-134 59-109 (272)
280 pfam01118 Semialdhyde_dh Semia 51.0 16 0.00041 15.8 5.2 34 95-134 63-96 (121)
281 PRK08118 topology modulation p 51.0 13 0.00034 16.4 2.5 31 15-46 2-32 (167)
282 COG1920 Predicted nucleotidylt 50.9 11 0.00029 16.9 2.1 24 90-113 102-127 (210)
283 TIGR01078 arcA arginine deimin 50.8 14 0.00037 16.1 2.7 33 228-266 235-267 (421)
284 cd04795 SIS SIS domain. SIS (S 50.7 16 0.00041 15.8 8.5 79 17-135 1-81 (87)
285 PRK12337 2-phosphoglycerate ki 50.6 16 0.00041 15.8 5.9 25 108-132 267-291 (492)
286 TIGR01316 gltA glutamate synth 50.4 16 0.00041 15.7 5.4 188 14-313 142-358 (462)
287 PRK02534 4-diphosphocytidyl-2- 50.2 8.8 0.00022 17.7 1.5 26 104-129 97-137 (308)
288 PRK12723 flagellar biosynthesi 50.2 16 0.00042 15.7 4.6 48 108-164 179-232 (388)
289 PRK04220 2-phosphoglycerate ki 50.1 14 0.00037 16.1 2.6 118 101-229 93-217 (306)
290 TIGR00235 udk uridine kinase; 50.1 16 0.00042 15.7 3.7 38 103-140 10-53 (220)
291 PRK12548 shikimate 5-dehydroge 50.0 16 0.00042 15.7 6.7 10 225-234 128-137 (289)
292 pfam00994 MoCF_biosynth Probab 49.9 16 0.00042 15.7 4.7 24 91-114 49-72 (140)
293 PRK06995 flhF flagellar biosyn 49.6 17 0.00043 15.7 4.2 48 108-164 181-232 (404)
294 TIGR02061 aprA adenylylsulfate 49.5 16 0.00041 15.8 2.7 186 100-318 1-213 (651)
295 PRK04344 consensus 49.2 12 0.00032 16.6 2.1 25 218-244 242-266 (284)
296 pfam04816 DUF633 Family of unk 49.1 6.1 0.00015 18.9 0.5 65 101-176 68-135 (204)
297 COG0031 CysK Cysteine synthase 48.9 17 0.00043 15.6 8.2 28 104-135 65-92 (300)
298 PRK04181 4-diphosphocytidyl-2- 48.6 11 0.00029 16.9 1.8 15 220-234 240-254 (254)
299 COG1105 FruK Fructose-1-phosph 48.5 17 0.00044 15.5 11.1 166 11-200 47-218 (310)
300 PRK10717 cysteine synthase A; 48.4 17 0.00044 15.5 7.8 30 104-139 67-96 (334)
301 PRK00094 gpsA NAD(P)H-dependen 48.3 17 0.00044 15.5 8.7 62 15-77 2-64 (325)
302 PRK07819 3-hydroxybutyryl-CoA 48.1 7.3 0.00019 18.3 0.8 38 16-56 4-41 (284)
303 PRK09424 pntA NAD(P) transhydr 48.1 18 0.00045 15.5 7.5 42 260-302 208-257 (510)
304 PRK13353 aspartate ammonia-lya 48.0 18 0.00045 15.5 4.3 179 102-294 89-304 (473)
305 PRK03288 consensus 47.6 14 0.00036 16.2 2.2 26 220-247 236-261 (283)
306 pfam03568 Peptidase_C50 Peptid 47.4 12 0.00031 16.6 1.9 15 208-222 131-145 (339)
307 COG4558 ChuT ABC-type hemin tr 47.1 18 0.00046 15.4 5.1 128 76-244 80-208 (300)
308 PRK06721 threonine synthase; R 46.9 18 0.00047 15.4 4.1 52 74-138 55-106 (352)
309 PRK08199 acetolactate synthase 46.8 18 0.00047 15.4 4.7 42 89-131 188-229 (553)
310 TIGR01085 murE UDP-N-acetylmur 46.7 13 0.00032 16.5 1.9 116 7-143 8-129 (494)
311 PRK07660 consensus 46.7 6.3 0.00016 18.8 0.3 38 16-56 5-42 (283)
312 TIGR03457 sulphoacet_xsc sulfo 46.3 19 0.00047 15.3 5.3 31 18-50 19-49 (579)
313 COG5379 BtaA S-adenosylmethion 46.3 19 0.00048 15.3 3.3 46 10-56 58-103 (414)
314 cd01398 RPI_A RPI_A: Ribose 5- 46.1 19 0.00048 15.3 2.9 49 82-140 3-53 (213)
315 cd02023 UMPK Uridine monophosp 45.9 19 0.00048 15.3 3.0 35 17-51 2-36 (198)
316 PRK08813 threonine dehydratase 45.9 8.7 0.00022 17.8 0.9 46 97-152 178-223 (349)
317 pfam05194 UreE_C UreE urease a 45.8 19 0.00048 15.3 2.9 28 116-144 40-67 (72)
318 PRK00045 hemA glutamyl-tRNA re 45.8 19 0.00048 15.2 11.7 26 150-175 96-121 (429)
319 cd05014 SIS_Kpsf KpsF-like pro 45.8 19 0.00048 15.2 8.6 97 16-170 2-101 (128)
320 PRK05465 ethanolamine ammonia- 45.7 8.5 0.00022 17.8 0.8 30 77-106 88-119 (260)
321 cd01596 Aspartatase_like Aspar 45.4 19 0.00049 15.2 4.1 26 102-127 84-113 (450)
322 COG0279 GmhA Phosphoheptose is 45.3 19 0.00049 15.2 9.8 114 15-170 42-163 (176)
323 PRK01726 consensus 45.3 19 0.00049 15.2 2.9 26 220-247 249-274 (312)
324 cd02024 NRK1 Nicotinamide ribo 45.2 19 0.00049 15.2 2.7 23 106-128 2-24 (187)
325 PRK09536 btuD corrinoid ABC tr 45.2 19 0.00049 15.2 3.5 21 16-36 30-50 (409)
326 TIGR00745 apbA_panE 2-dehydrop 45.2 19 0.00049 15.2 3.6 142 16-163 1-165 (332)
327 PRK06130 3-hydroxybutyryl-CoA 44.8 20 0.0005 15.1 3.3 39 16-57 7-45 (310)
328 pfam08704 GCD14 tRNA methyltra 44.7 20 0.0005 15.1 3.3 37 110-154 109-147 (309)
329 PRK12390 1-aminocyclopropane-1 44.6 20 0.0005 15.1 8.1 55 79-136 169-224 (337)
330 cd00287 ribokinase_pfkB_like r 44.6 20 0.0005 15.1 8.6 31 14-45 27-57 (196)
331 TIGR03599 YloV DAK2 domain fus 44.4 20 0.00051 15.1 8.0 13 23-35 30-42 (530)
332 PRK05480 uridine kinase; Provi 44.3 20 0.00051 15.1 3.6 29 107-135 10-38 (209)
333 PRK07402 precorrin-6B methylas 44.3 20 0.00051 15.1 6.9 111 13-159 38-160 (196)
334 PRK06522 2-dehydropantoate 2-r 44.2 20 0.00051 15.1 5.6 39 16-55 2-41 (307)
335 pfam11144 DUF2920 Protein of u 43.8 20 0.00052 15.0 4.4 41 99-139 35-76 (403)
336 PRK08626 fumarate reductase fl 43.5 20 0.00052 15.0 6.6 81 15-97 6-102 (657)
337 cd07044 CofD_YvcK Family of Co 43.4 20 0.00052 15.0 3.1 32 108-143 4-35 (309)
338 cd03145 GAT1_cyanophycinase Ty 43.4 20 0.00052 15.0 5.3 71 89-167 18-90 (217)
339 PRK07525 sulfoacetaldehyde ace 43.4 20 0.00052 15.0 4.9 33 18-52 23-55 (589)
340 PRK07524 hypothetical protein; 43.2 21 0.00053 15.0 4.1 28 18-47 19-46 (534)
341 cd06060 misato Human Misato sh 43.0 21 0.00053 15.0 5.8 152 71-226 120-291 (493)
342 KOG1436 consensus 42.9 12 0.00029 16.8 1.2 70 240-320 236-306 (398)
343 COG0569 TrkA K+ transport syst 42.5 21 0.00054 14.9 10.2 96 16-139 2-104 (225)
344 LOAD_sis consensus 42.5 21 0.00054 14.9 5.1 37 99-138 51-87 (90)
345 PRK05335 tRNA (uracil-5-)-meth 42.4 21 0.00054 14.9 3.6 34 14-48 3-36 (434)
346 pfam04794 YdjC YdjC-like prote 42.2 21 0.00054 14.9 6.4 189 20-212 10-229 (261)
347 PRK10867 signal recognition pa 42.2 21 0.00054 14.9 5.6 47 5-51 90-142 (453)
348 PRK03188 4-diphosphocytidyl-2- 42.2 14 0.00035 16.3 1.5 31 217-250 246-276 (299)
349 smart00852 MoCF_biosynth Proba 42.0 21 0.00055 14.8 5.0 18 92-109 51-68 (135)
350 cd06338 PBP1_ABC_ligand_bindin 41.9 22 0.00055 14.8 4.6 50 75-135 53-102 (345)
351 COG0281 SfcA Malic enzyme [Ene 41.9 22 0.00055 14.8 3.6 39 189-227 172-210 (432)
352 cd01362 Fumarase_classII Class 41.8 19 0.00049 15.2 2.1 103 180-294 191-300 (455)
353 PRK07429 phosphoribulokinase; 41.1 22 0.00056 14.8 3.6 36 104-139 9-44 (331)
354 PRK13940 glutamyl-tRNA reducta 41.0 22 0.00057 14.7 7.8 28 148-175 93-120 (414)
355 PRK06835 DNA replication prote 41.0 22 0.00057 14.7 3.3 107 98-222 183-298 (330)
356 PRK00650 4-diphosphocytidyl-2- 40.9 20 0.00052 15.0 2.2 18 220-237 228-245 (288)
357 cd05017 SIS_PGI_PMI_1 The memb 40.9 22 0.00057 14.7 8.3 93 16-134 1-96 (119)
358 PRK11823 DNA repair protein Ra 40.8 22 0.00057 14.7 3.5 196 89-311 154-402 (454)
359 cd05015 SIS_PGI_1 Phosphogluco 40.7 22 0.00057 14.7 3.0 40 16-55 22-65 (158)
360 KOG3960 consensus 40.4 23 0.00058 14.7 3.9 65 117-203 99-168 (284)
361 COG1064 AdhP Zn-dependent alco 40.2 23 0.00058 14.7 7.7 30 104-138 171-200 (339)
362 PRK03363 fixB putative electro 40.2 18 0.00047 15.4 1.8 13 314-326 256-268 (313)
363 PRK00377 cbiT cobalt-precorrin 40.2 23 0.00058 14.6 7.4 99 14-138 39-149 (198)
364 PRK11382 frlB fructoselysine-6 39.9 23 0.00059 14.6 6.0 89 28-139 41-137 (347)
365 PRK08638 threonine dehydratase 39.8 23 0.00058 14.7 2.3 23 262-285 304-326 (329)
366 PRK10294 6-phosphofructokinase 39.8 23 0.00059 14.6 9.6 88 95-196 127-216 (309)
367 PRK11131 ATP-dependent RNA hel 39.6 23 0.00059 14.6 5.4 49 86-138 76-126 (1295)
368 pfam05985 EutC Ethanolamine am 39.6 11 0.00029 16.9 0.7 30 77-106 80-110 (237)
369 COG1486 CelF Alpha-galactosida 39.3 23 0.0006 14.6 7.6 140 14-178 3-148 (442)
370 cd07187 YvcK_like family of mo 38.8 24 0.00061 14.5 3.2 118 108-230 4-140 (308)
371 PRK13660 hypothetical protein; 38.4 24 0.00062 14.5 5.6 77 90-169 33-110 (183)
372 PRK05948 precorrin-2 methyltra 38.4 24 0.00062 14.5 6.6 30 76-112 14-43 (238)
373 PRK04648 consensus 38.4 24 0.00062 14.5 2.5 41 195-246 228-268 (295)
374 KOG1663 consensus 38.3 24 0.00062 14.5 4.9 11 85-95 134-144 (237)
375 PRK04943 consensus 38.3 24 0.00062 14.4 3.0 25 220-246 233-257 (288)
376 smart00518 AP2Ec AP endonuclea 38.2 24 0.00062 14.4 7.3 167 117-320 12-183 (273)
377 pfam00513 Late_protein_L2 Late 38.2 22 0.00057 14.7 2.0 25 89-116 37-61 (466)
378 COG0572 Udk Uridine kinase [Nu 38.0 25 0.00063 14.4 3.4 23 107-129 12-34 (218)
379 PRK13943 protein-L-isoaspartat 37.9 22 0.00056 14.8 2.0 18 111-128 83-101 (317)
380 KOG2017 consensus 37.7 25 0.00063 14.4 2.4 34 96-136 64-97 (427)
381 COG0391 Uncharacterized conser 37.6 25 0.00063 14.4 3.3 29 107-138 12-41 (323)
382 KOG3923 consensus 37.6 19 0.00048 15.3 1.6 22 14-35 3-24 (342)
383 pfam01933 UPF0052 Uncharacteri 37.6 25 0.00064 14.4 3.3 28 108-138 4-31 (291)
384 KOG2336 consensus 37.4 25 0.00064 14.4 4.4 67 116-186 93-166 (422)
385 cd01712 ThiI ThiI is required 37.3 25 0.00064 14.3 6.8 150 104-288 2-156 (177)
386 PRK08268 3-hydroxybutyryl-CoA 37.2 11 0.00027 17.1 0.3 53 16-71 5-57 (503)
387 COG3640 CooC CO dehydrogenase 37.1 25 0.00065 14.3 3.1 39 15-54 1-42 (255)
388 cd06331 PBP1_AmiC_like Type I 37.1 25 0.00065 14.3 4.7 48 74-132 48-95 (333)
389 COG4034 Uncharacterized protei 36.9 25 0.00065 14.3 2.8 115 10-159 7-128 (328)
390 PRK12377 putative replication 36.9 25 0.00065 14.3 8.6 118 82-222 84-215 (248)
391 TIGR01501 MthylAspMutase methy 36.9 25 0.00065 14.3 2.7 103 18-129 4-134 (134)
392 PRK10869 recombination and rep 36.7 15 0.00038 16.0 0.9 34 134-167 92-127 (553)
393 pfam01645 Glu_synthase Conserv 36.7 21 0.00053 15.0 1.7 36 95-130 130-169 (367)
394 PRK07530 3-hydroxybutyryl-CoA 36.6 12 0.0003 16.8 0.4 38 16-56 6-43 (292)
395 smart00382 AAA ATPases associa 36.6 26 0.00066 14.3 3.5 34 107-140 6-41 (148)
396 pfam06974 DUF1298 Protein of u 36.4 26 0.00066 14.2 3.5 36 132-167 11-50 (153)
397 pfam00205 TPP_enzyme_M Thiamin 36.3 26 0.00066 14.2 4.4 77 90-168 2-85 (138)
398 KOG2385 consensus 36.1 16 0.0004 15.9 1.0 26 98-123 261-292 (633)
399 PTZ00245 ubiquitin activating 36.1 26 0.00067 14.2 2.6 31 14-44 26-56 (287)
400 pfam00282 Pyridoxal_deC Pyrido 35.8 26 0.00067 14.2 4.5 38 92-129 184-224 (370)
401 PRK05198 2-dehydro-3-deoxyphos 35.8 12 0.0003 16.8 0.3 23 116-138 69-91 (264)
402 PRK05586 biotin carboxylase; V 35.7 27 0.00068 14.2 4.3 200 16-271 4-216 (447)
403 TIGR00514 accC acetyl-CoA carb 35.6 27 0.00068 14.2 2.1 177 117-325 14-225 (451)
404 COG1212 KdsB CMP-2-keto-3-deox 35.6 27 0.00068 14.2 5.5 83 207-301 45-129 (247)
405 pfam09370 TIM-br_sig_trns TIM- 35.6 22 0.00057 14.7 1.7 46 90-143 5-51 (268)
406 COG1240 ChlD Mg-chelatase subu 35.5 27 0.00068 14.1 5.6 75 124-198 74-172 (261)
407 COG0816 Predicted endonuclease 35.4 27 0.00068 14.1 2.6 63 116-187 41-105 (141)
408 PRK06608 threonine dehydratase 35.2 27 0.00069 14.1 3.8 17 98-115 172-188 (330)
409 PRK12483 threonine dehydratase 35.1 26 0.00067 14.2 2.0 169 91-309 178-359 (521)
410 PRK10926 ferredoxin-NADP reduc 35.0 27 0.00069 14.1 2.7 13 111-123 113-125 (248)
411 PRK05939 hypothetical protein; 35.0 27 0.00069 14.1 6.1 29 207-236 292-321 (396)
412 PRK09513 fruK 1-phosphofructok 34.9 27 0.00069 14.1 14.3 166 17-200 33-220 (312)
413 PRK03731 aroL shikimate kinase 34.9 27 0.0007 14.1 4.5 102 15-140 3-105 (172)
414 PRK05464 Na(+)-translocating N 34.9 27 0.0007 14.1 2.5 22 91-112 54-75 (408)
415 cd04255 AAK_UMPK-MosAB AAK_UMP 34.9 25 0.00065 14.3 1.9 46 77-128 42-87 (262)
416 pfam01135 PCMT Protein-L-isoas 34.8 25 0.00065 14.3 1.9 104 96-234 71-176 (205)
417 cd06206 bifunctional_CYPOR The 34.7 17 0.00043 15.6 1.0 26 198-223 133-158 (384)
418 pfam01134 GIDA Glucose inhibit 34.7 27 0.0007 14.1 3.1 33 17-50 2-34 (391)
419 cd01174 ribokinase Ribokinase 34.7 28 0.0007 14.1 11.5 131 18-171 31-184 (292)
420 PRK00485 fumC fumarate hydrata 34.7 28 0.0007 14.1 4.6 103 180-294 195-304 (462)
421 pfam03060 NPD 2-nitropropane d 34.5 28 0.00071 14.0 4.2 59 91-162 3-62 (330)
422 cd00544 CobU Adenosylcobinamid 34.5 28 0.00071 14.0 4.4 42 110-151 6-48 (169)
423 PRK08154 anaerobic benzoate ca 34.4 28 0.00071 14.0 3.8 38 14-52 133-170 (304)
424 PRK08312 putative indolepyruva 34.4 28 0.00071 14.0 2.5 170 14-228 9-194 (509)
425 pfam06048 DUF927 Domain of unk 34.4 28 0.00071 14.0 4.4 46 234-282 165-210 (284)
426 PRK08246 threonine dehydratase 34.3 28 0.00071 14.0 3.6 65 59-139 34-98 (307)
427 COG1744 Med Uncharacterized AB 34.3 28 0.00071 14.0 5.7 34 97-137 96-129 (345)
428 TIGR02749 prenyl_cyano solanes 34.2 17 0.00043 15.6 0.9 20 171-193 201-220 (325)
429 COG3246 Uncharacterized conser 34.1 28 0.00071 14.0 3.2 42 73-116 52-94 (298)
430 pfam02680 DUF211 Uncharacteriz 34.0 19 0.00047 15.3 1.1 25 211-235 57-81 (91)
431 PRK07379 coproporphyrinogen II 33.8 28 0.00072 13.9 2.5 82 105-190 69-158 (399)
432 cd06356 PBP1_Amide_Urea_BP_lik 33.7 28 0.00072 13.9 5.4 49 74-133 48-96 (334)
433 PRK11916 electron transfer fla 33.7 28 0.00072 13.9 2.7 14 122-135 22-35 (312)
434 PRK12439 NAD(P)H-dependent gly 33.5 29 0.00073 13.9 7.2 115 13-148 5-122 (340)
435 COG4588 AcfC Accessory coloniz 33.4 29 0.00073 13.9 2.4 33 260-302 44-76 (252)
436 PRK13397 3-deoxy-7-phosphohept 33.2 14 0.00035 16.3 0.3 25 265-289 124-148 (250)
437 PRK00128 ipk 4-diphosphocytidy 33.2 18 0.00046 15.4 0.9 27 218-246 240-266 (281)
438 PRK13301 putative L-aspartate 32.7 29 0.00075 13.8 5.2 41 14-54 2-42 (267)
439 COG1798 DPH5 Diphthamide biosy 32.5 30 0.00076 13.8 6.3 82 82-165 59-163 (260)
440 COG3426 Butyrate kinase [Energ 32.3 23 0.00058 14.7 1.3 43 75-117 143-193 (358)
441 KOG2666 consensus 32.2 30 0.00076 13.8 5.9 113 15-138 2-130 (481)
442 PRK05713 hypothetical protein; 32.1 30 0.00077 13.8 2.3 42 263-306 193-235 (312)
443 PRK06222 ferredoxin-NADP(+) re 32.0 30 0.00077 13.7 3.7 86 45-166 65-154 (281)
444 cd02028 UMPK_like Uridine mono 32.0 26 0.00067 14.2 1.6 21 107-127 3-23 (179)
445 PRK13398 3-deoxy-7-phosphohept 31.9 15 0.00039 16.0 0.3 36 120-160 46-86 (266)
446 PRK05787 cobalt-precorrin-6Y C 31.8 30 0.00077 13.7 7.0 73 17-108 2-76 (207)
447 PRK07092 benzoylformate decarb 31.8 30 0.00078 13.7 4.5 38 216-253 189-229 (521)
448 pfam05872 DUF853 Bacterial pro 31.7 30 0.00078 13.7 2.2 27 183-224 133-159 (504)
449 PRK08198 threonine dehydratase 31.7 31 0.00078 13.7 2.3 51 91-151 165-217 (406)
450 cd00887 MoeA MoeA family. Memb 31.6 31 0.00078 13.7 4.8 27 112-138 143-169 (394)
451 PHA02518 ParA-like protein; Pr 31.5 31 0.00078 13.7 6.2 117 23-157 10-129 (211)
452 pfam01380 SIS SIS domain. SIS 31.4 31 0.00079 13.7 8.6 57 96-170 51-107 (131)
453 COG1010 CobJ Precorrin-3B meth 31.4 31 0.00079 13.7 8.2 106 16-138 4-110 (249)
454 COG2025 FixB Electron transfer 31.4 31 0.00079 13.7 2.2 13 314-326 255-267 (313)
455 TIGR01978 sufC FeS assembly AT 31.4 30 0.00075 13.8 1.7 16 236-251 151-166 (248)
456 PRK11020 hypothetical protein; 31.3 19 0.00048 15.3 0.7 40 132-174 63-103 (118)
457 pfam10928 DUF2810 Protein of u 31.3 23 0.00057 14.7 1.1 38 134-174 2-40 (54)
458 PRK11579 putative oxidoreducta 31.0 31 0.0008 13.6 3.8 135 14-197 4-141 (346)
459 TIGR00770 Dcu transporter, ana 31.0 29 0.00074 13.9 1.6 19 111-129 100-121 (447)
460 PRK13435 response regulator; P 30.9 28 0.00071 14.0 1.5 90 28-144 15-107 (141)
461 TIGR03215 ac_ald_DH_ac acetald 30.7 32 0.00081 13.6 7.4 93 14-134 1-94 (285)
462 PRK08133 O-succinylhomoserine 30.6 32 0.00081 13.6 5.1 16 118-133 166-181 (391)
463 TIGR02108 PQQ_syn_pqqB coenzym 30.6 32 0.00081 13.6 2.8 11 258-268 271-281 (314)
464 pfam02698 DUF218 DUF218 domain 30.5 32 0.00081 13.6 6.3 31 100-130 32-62 (148)
465 PRK05414 urocanate hydratase; 30.4 32 0.00081 13.6 3.3 39 99-142 166-204 (558)
466 cd06342 PBP1_ABC_LIVBP_like Ty 30.4 32 0.00082 13.6 5.1 49 75-135 49-97 (334)
467 KOG4498 consensus 30.4 32 0.00082 13.6 1.9 34 203-236 57-95 (197)
468 PRK12809 putative oxidoreducta 30.4 32 0.00082 13.6 5.3 87 225-320 312-406 (639)
469 PRK00312 pcm protein-L-isoaspa 30.3 32 0.00082 13.6 3.8 33 204-236 148-180 (213)
470 cd01746 GATase1_CTP_Synthase T 30.2 32 0.00082 13.5 4.5 42 93-135 50-91 (235)
471 COG0069 GltB Glutamate synthas 30.2 29 0.00074 13.9 1.5 23 225-249 170-192 (485)
472 cd06347 PBP1_ABC_ligand_bindin 30.1 32 0.00083 13.5 6.1 51 74-135 48-98 (334)
473 PTZ00247 adenosine kinase; Pro 30.1 32 0.00083 13.5 11.6 144 14-171 54-223 (345)
474 PRK05899 transketolase; Review 30.0 32 0.00083 13.5 3.5 19 280-298 437-455 (661)
475 PRK08275 putative oxidoreducta 29.9 33 0.00083 13.5 3.9 123 7-132 2-155 (554)
476 pfam06068 TIP49 TIP49 C-termin 29.8 33 0.00083 13.5 3.8 84 70-160 9-106 (395)
477 PRK07586 hypothetical protein; 29.6 33 0.00084 13.5 5.5 30 18-48 18-47 (514)
478 TIGR00683 nanA N-acetylneurami 29.6 33 0.00084 13.5 2.5 162 70-273 37-214 (294)
479 PRK07512 L-aspartate oxidase; 29.5 26 0.00066 14.2 1.2 88 6-97 1-100 (507)
480 PRK08639 threonine dehydratase 29.5 33 0.00084 13.5 2.4 51 91-151 169-222 (418)
481 TIGR01809 Shik-DH-AROM shikima 29.5 33 0.00084 13.5 3.0 67 76-170 32-98 (291)
482 PRK09434 aminoimidazole ribosi 29.5 33 0.00084 13.5 13.2 152 20-178 25-197 (304)
483 PRK10264 hydrogenase 1 maturat 29.5 33 0.00084 13.5 5.0 52 14-65 3-65 (195)
484 PRK12457 2-dehydro-3-deoxyphos 29.2 18 0.00045 15.4 0.3 26 265-290 132-157 (281)
485 pfam06414 Zeta_toxin Zeta toxi 29.2 33 0.00085 13.4 8.9 115 11-138 8-127 (191)
486 PRK09412 anaerobic C4-dicarbox 29.1 34 0.00085 13.4 2.0 32 98-129 84-125 (433)
487 PRK13984 putative oxidoreducta 29.1 34 0.00086 13.4 5.3 23 16-38 285-307 (604)
488 PRK00131 aroK shikimate kinase 29.1 34 0.00086 13.4 5.0 104 14-140 4-108 (175)
489 cd00614 CGS_like CGS_like: Cys 29.0 34 0.00086 13.4 5.0 60 206-268 265-325 (369)
490 pfam01175 Urocanase Urocanase. 28.9 34 0.00086 13.4 3.3 44 94-142 148-193 (545)
491 TIGR02478 6PF1K_euk 6-phosphof 28.8 33 0.00084 13.5 1.6 25 211-236 52-76 (777)
492 cd06359 PBP1_Nba_like Type I p 28.8 34 0.00087 13.4 6.1 61 73-144 45-105 (333)
493 TIGR01087 murD UDP-N-acetylmur 28.7 34 0.00087 13.4 7.3 100 16-140 1-102 (476)
494 cd01834 SGNH_hydrolase_like_2 28.6 34 0.00087 13.4 6.2 66 59-134 2-67 (191)
495 pfam02719 Polysacc_synt_2 Poly 28.6 34 0.00087 13.4 11.0 230 21-310 6-260 (280)
496 PRK09853 putative selenate red 28.6 34 0.00087 13.4 5.5 74 16-111 552-647 (1032)
497 TIGR00631 uvrb excinuclease AB 28.6 34 0.00087 13.4 2.7 26 110-135 36-61 (667)
498 pfam03853 YjeF_N YjeF-related 28.6 34 0.00087 13.3 8.7 73 82-160 10-83 (170)
499 pfam01370 Epimerase NAD depend 28.3 35 0.00088 13.3 9.8 182 17-222 1-218 (235)
500 PRK09432 metF 5,10-methylenete 28.2 35 0.00088 13.3 6.2 58 77-136 33-90 (296)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=0 Score=941.51 Aligned_cols=309 Identities=60% Similarity=0.947 Sum_probs=306.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
+.|||||||||||||+||||++.+++||+||++|||+|+|.+|++++|||||+++||||||||||++||+||+||+++|+
T Consensus 12 ~a~IkViGvGG~G~Navn~m~~~~i~gv~fia~NTD~q~L~~s~a~~ki~lG~~~T~GlGAG~~Pe~G~~AA~es~~~I~ 91 (387)
T PRK09330 12 GAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREEIR 91 (387)
T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97289996688638999999985998707999826099984599982597077756888888781788999999999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97269989999803676667407899999998649849999504300040678888999999999863335450278887
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLF 173 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~ 173 (502)
++|+|+||||||||||||||||||||||++||++|||||+|||+||+|||++|+++|++||++|+++||+|||||||||+
T Consensus 92 ~~l~g~dmvFItAGmGGGTGTGAaPviA~iAke~g~LtV~vVT~PF~fEG~~R~~~A~~Gi~~L~~~vDtlIvIpNdkLl 171 (387)
T PRK09330 92 EALEGADMVFITAGMGGGTGTGAAPVVAEIAKEMGILTVGVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLL 171 (387)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHCCEEEEECCHHHH
T ss_conf 99778987999626678877760489999885579849999958951017879999999999999868879997608988
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 41366531899974467999999888887651665555898787876415865899876148620489999887527010
Q gi|254781176|r 174 RIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLL 253 (502)
Q Consensus 174 ~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll 253 (502)
+++++++++.+||++||+||+++|+||+++|++||+|||||+||||||+++|.|+||+|+|+|+|||.+|+++||+||||
T Consensus 172 ~~~~~~~~~~~AF~~aD~vL~~aV~gIsdlI~~~G~INvDFaDVktVm~~~G~A~mG~G~a~Ge~Ra~~Av~~Ai~sPLL 251 (387)
T PRK09330 172 EVVDKKTPLLDAFKAADDVLRQAVQGISDLITKPGLINLDFADVKTVMSEMGKAMMGIGEASGEDRAREAAEKAISSPLL 251 (387)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 74158998999999999999999999999851787202568888787627964899877864864599999999849264
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCC
Q ss_conf 002245553789996168888999999999999974168863999853134657547999985135532
Q gi|254781176|r 254 DEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322 (502)
Q Consensus 254 ~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg~d~~ 322 (502)
|+.+|+|||++||||+||+||+|.|+++++++|++.++++|+||||+++|++|+++||||||||||+..
T Consensus 252 e~~~i~gAkgvLvnItgg~dltl~E~~e~~~~I~~~~~~da~II~G~~~D~~l~d~i~VtVIATG~~~~ 320 (387)
T PRK09330 252 EDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELGDEIRVTVIATGFGED 320 (387)
T ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf 578867874689999779998989999999999986079973999666888779828999997889865
No 2
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=936.48 Aligned_cols=309 Identities=55% Similarity=0.878 Sum_probs=305.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHC----CCCCCEEEEECCCHHHHHHCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86179999668147999999985----899844999825578855189-9704851554255678888838999999972
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSS----GLQGVNFVVANTDAQALMMSK-AKQIIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~----~~~~~~~~~~ntd~~~l~~~~-~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
++||+||||||+|||+||||++. +++||+|||+|||+|||.+++ |++|||||.++||||||||+|++||+||+||
T Consensus 17 ~akI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AAees 96 (365)
T TIGR00065 17 KAKIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAAEES 96 (365)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 62899998558823589999870553223762699974837854115562413561573355676799838889998988
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999972699899998036766674078999999986498499995043000406788889999999998633354502
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIP 168 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~ 168 (502)
+|+|+++|+|+|||||||||||||||||||||||+||++|||||||||+||.|||++|+++|++||++|+++|||+||||
T Consensus 97 ~d~i~~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~~GaLTvavVT~PF~~EG~kr~~~A~~Gl~~L~~~~Dt~ivIP 176 (365)
T TIGR00065 97 RDEIRELLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGKKRRKKAEEGLERLKQAVDTLIVIP 176 (365)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 99999970388818997258668666635789999975790699984287410158999999987898765568478826
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCC---HHHHHHH
Q ss_conf 7888741366531899974467999999888887651665555898787876415865899876148620---4899998
Q gi|254781176|r 169 NQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHG---RGIQAAE 245 (502)
Q Consensus 169 n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~---r~~~a~~ 245 (502)
|||||++++.++|+.+||+.||+||.++||||+||||.||+||||||||||||+++|.||||+|+++|++ ||.+|+.
T Consensus 177 NdkLL~v~p~~~p~~~AF~~AD~vL~~aVkGI~elIt~PgliN~DFADVr~vM~~~G~A~~G~G~a~g~~~a~Ra~eav~ 256 (365)
T TIGR00065 177 NDKLLEVVPNNLPLNDAFKVADDVLRRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEASGEDRAKRAKEAVR 256 (365)
T ss_pred CHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCHHHHHHHHCCCCEEEEECEEEECCCCCHHHHHHHH
T ss_conf 64688860689888999999999999750264788632002131298899995689815650113204452046899999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CCEEEEEEEEECCCCC
Q ss_conf 8752701000224555378999616888899999999999997416886399985313465-7547999985135532
Q gi|254781176|r 246 AAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEAL-EGVIRVSVVATGIENR 322 (502)
Q Consensus 246 ~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~-~~~~~v~~iatg~d~~ 322 (502)
.||+|||||..+|.||||+|+||+||+|+||.|++++.+.|+..+++||+||||+.+|++| ++.||||+||||+...
T Consensus 257 ~A~~sPLLd~~~~~GA~G~Lvn~~gG~Dl~L~E~~~~~~~i~~~~d~~A~iIwG~~i~~~LPe~~~rVt~v~TG~~~~ 334 (365)
T TIGR00065 257 KAISSPLLDVDKISGAKGALVNITGGPDLTLLEAEEIGEIITSELDQDANIIWGAIIDPNLPEDEIRVTVVATGVKSQ 334 (365)
T ss_pred HHHCCCCCHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCC
T ss_conf 741154302230288537999985698962899999986654415874038985311754678648999997376551
No 3
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=0 Score=876.50 Aligned_cols=310 Identities=56% Similarity=0.853 Sum_probs=305.1
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 54386179999668147999999985899844999825578855189970485155425567888883899999997299
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
...+||||||||||||||+||||+..+++||+||++|||+|||.+|++++|||||+++||||||||||++||+||+||++
T Consensus 24 ~~~~~kIkViGvGG~G~Navn~M~~~gi~gVefia~NTD~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~ 103 (387)
T PRK13018 24 DFGGPKIKVVGVGGAGNNTVNRLYDIGIEGAETIAINTDAQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRD 103 (387)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47998689997688639999999983999834999816599983699982798577657889998883899999998299
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997269989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
+|+++|+|+||||||||||||||||||||||++||++|+|||+|||+||.|||++|+++|++||++|+++||++||||||
T Consensus 104 ~I~~~l~g~DmVFItAGmGGGTGTGAAPVIA~iAke~GaLtVavVT~PF~fEG~~R~~~A~~Gl~~L~~~vDtlIvIpNd 183 (387)
T PRK13018 104 EIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVIGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNN 183 (387)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHH
T ss_conf 99999758986999953478513777899999999819939999448957776899999999999999869969997328
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 88741366531899974467999999888887651665555898787876415865899876148620489999887527
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVAN 250 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~ 250 (502)
||++++ +++++.+||++||+||+++|+||+++|++||+|||||+|||+||+++|.|+||+|+++|+||+.+|+++||+|
T Consensus 184 kL~~~~-~~~~~~~AF~~aD~vL~~~V~gI~diI~~~G~INvDFaDvrtVm~~~G~A~mG~G~a~Ge~Ra~~Av~~Al~s 262 (387)
T PRK13018 184 RLLDIV-PNLPIADAFSVADEVLAETVKGITETITKPGLINLDFADVKSVMKGGGVAMMGVGEAKGENRAMKAVRAALAN 262 (387)
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 999987-0697999999999999999999999972789766477899998628873999998725862799999999839
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCC
Q ss_conf 010002245553789996168888999999999999974168863999853134657547999985135532
Q gi|254781176|r 251 PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIENR 322 (502)
Q Consensus 251 pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg~d~~ 322 (502)
|||| .+|+||+++||||+||+||||.|+++++++|++.++++|+||||+++|++|+++||||||||||+..
T Consensus 263 PLLd-~~i~gA~g~LvnItgg~dltl~E~~~~~~~I~~~~~~da~Ii~G~~iD~~l~~~vrVtvIaTG~~~~ 333 (387)
T PRK13018 263 PLLD-VDYKGAKGALVHITGGPDLTLKEANEAASRITEELDPEANIIWGARIDPDMEGKVRVMVIMTGVKSP 333 (387)
T ss_pred CCCC-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCEEEEEEEEECCCCC
T ss_conf 7756-8744676799999779999899999999999997599985997206887789828999999368950
No 4
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=0 Score=812.67 Aligned_cols=304 Identities=62% Similarity=0.961 Sum_probs=301.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
+|||||||||||||+||+|++.++++|+||++|||+|||+++++++|||||+++||||||||||++||+||+|++++|++
T Consensus 1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~~~I~~ 80 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIKE 80 (304)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94699987881299999999839998559999087999845999827970876568898888847999999988999999
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788874
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFR 174 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~ 174 (502)
+|+++||||||||||||||||||||||++||++|+|||+|||+||+|||++|+++|++||++|+++||++||||||||++
T Consensus 81 ~l~~~d~vfi~AGmGGGTGTGaaPviA~~Ake~g~LtvavVT~PF~~EG~~R~~~A~~gl~~L~~~~D~~Ivi~NdkL~~ 160 (304)
T cd02201 81 ALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLE 160 (304)
T ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf 97368769999425798663178999998866798599999678577528999999999999998589459963599997
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 13665318999744679999998888876516655558987878764158658998761486204899998875270100
Q gi|254781176|r 175 IANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254 (502)
Q Consensus 175 ~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~ 254 (502)
++++++|+.+||+++|++|.++|++|+++|++||+||+||+|||+||+++|.|+||+|+++|++|+.+|+++||+|||||
T Consensus 161 ~~~~~~~~~~Af~~ad~~l~~~V~~I~~li~~~g~iNlDfaDv~~vm~~~G~a~~g~G~a~g~~ra~~Av~~Al~sPLLd 240 (304)
T cd02201 161 VVDKNLPLLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLE 240 (304)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 63668878999999999999999999998734797677878999886389818999987438707999999974497656
Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEC
Q ss_conf 0224555378999616888899999999999997416886399985313465754799998513
Q gi|254781176|r 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATG 318 (502)
Q Consensus 255 ~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg 318 (502)
+.+|++|+++||||+||+||+|.|+++++++|++.+++|++||||+++|++|++++||||||||
T Consensus 241 ~~~i~~A~g~Lv~I~gg~d~tl~e~~~i~~~I~~~~~~da~ii~G~~~d~~l~~~v~VtiIaTG 304 (304)
T cd02201 241 DDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTVIATG 304 (304)
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEC
T ss_conf 8880367659999983999999999999999999719997599836778888984899999729
No 5
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=0 Score=774.44 Aligned_cols=303 Identities=40% Similarity=0.620 Sum_probs=299.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
.|||||||||||||+||+|++.++++|+|||+|||+|+|..+++++|||||+++|||+|||+||++||+||+|+.++|++
T Consensus 1 akI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aA~e~~~~I~~ 80 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDN 80 (303)
T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899987881399999999829997179999576999835999828972766668898988945899999999999999
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788874
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFR 174 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~ 174 (502)
.|+++|||||+|||||||||||+||||++||++|+|||+|||+||.|||++|+++|++||++|+++||++||||||||++
T Consensus 81 ~l~~~d~vfi~AGmGGGTGtGaaPviA~~Ake~g~ltvavVt~PF~~EG~~r~~~A~~gl~~L~~~~D~~Ivi~Nd~L~~ 160 (303)
T cd02191 81 IPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQ 160 (303)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 86569989999841897004289999999997599389999787255119999999999999998699799960689986
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 13665318999744679999998888876516655558987878764158658998761486204899998875270100
Q gi|254781176|r 175 IANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254 (502)
Q Consensus 175 ~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~ 254 (502)
++. ++|+.+||+++|++|+++|++|+++|++||+|||||+|||+||+++|.|+||+|+++|+||+.+|+++||+||||+
T Consensus 161 ~~~-~~~~~~af~~~d~~l~~~i~~I~~~i~~~g~iNvDfaDv~~vl~~~G~a~iG~G~~~g~~r~~~A~~~Al~sPLl~ 239 (303)
T cd02191 161 IGE-KASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLL 239 (303)
T ss_pred HCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 526-8979999998989999999999999836798654778999986389739999864068746999999998587868
Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEC
Q ss_conf 0224555378999616888899999999999997416886399985313465754799998513
Q gi|254781176|r 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATG 318 (502)
Q Consensus 255 ~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg 318 (502)
..++++|+++||||+||+||+|.|+++++++|++.++++++||||+++|++|++++||||||||
T Consensus 240 ~~~i~~A~~~Lv~i~gg~d~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~l~d~v~VtiIaTG 303 (303)
T cd02191 240 PCEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIVLTG 303 (303)
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEC
T ss_conf 7655787769999977999998999999999999719898799841178888986999999739
No 6
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=0 Score=724.17 Aligned_cols=310 Identities=58% Similarity=0.883 Sum_probs=306.6
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 54386179999668147999999985899844999825578855189970485155425567888883899999997299
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
...++||+||||||||||+||+|++.++++|+||++|||+|||.+++++.|||||.++|||||||++|++|++||+|+++
T Consensus 8 ~~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~~~ 87 (338)
T COG0206 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEESIE 87 (338)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHHHCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 01484699998688536999999984107547999606789984466671899613131136778882687999999899
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997269989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
+|++.|+++||||||||||||||||||||||++||++|+|||+|||+||.|||++|+++|..||++|++++|++|+||||
T Consensus 88 ~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Nd 167 (338)
T COG0206 88 EIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPND 167 (338)
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCEEEEECH
T ss_conf 99998466875999962067766650589999987739836899985522028458888999999999747929998268
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 88741366531899974467999999888887651665555898787876415865899876148620489999887527
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVAN 250 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~ 250 (502)
||++.++ ++++.+||+.||++|.++|++|+|+|+.||+||+||+|||+||+++|.|+||+|+++|++|+.+|+++|++|
T Consensus 168 kll~~~~-~~~~~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~A~mG~g~~~~~~r~~~a~~~A~~~ 246 (338)
T COG0206 168 KLLKGKD-KTPIAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNS 246 (338)
T ss_pred HHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 8774467-751999999999999999989999854686576459999999845881268885056415899999987518
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCCC
Q ss_conf 01000224555378999616888899999999999997416886399985313465754799998513553
Q gi|254781176|r 251 PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIEN 321 (502)
Q Consensus 251 pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg~d~ 321 (502)
|||++.+|+||+++||||+||+|++|.|++++.+.|++.++++++||||..+|+++.+.+||++|+||++.
T Consensus 247 pLl~~~~i~gA~~~Lv~i~g~~dl~l~ev~~~~~~i~~~i~~~~~vi~G~~~d~~~~~~v~v~vi~tg~~~ 317 (338)
T COG0206 247 PLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEVRVLVIATGIRS 317 (338)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCC
T ss_conf 86144345561035899945987678899999999999858996499714017887864999999952660
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=0 Score=592.52 Aligned_cols=302 Identities=24% Similarity=0.353 Sum_probs=283.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCC-----CEEEEECCCHHHHH---HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1799996681479999999858998-----44999825578855---189970485155425567888883899999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQG-----VNFVVANTDAQALM---MSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~-----~~~~~~ntd~~~l~---~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
||+||||||||||+||+|++.+.++ ++++|+|||+|+|. .++++.|+|||+.+|+|+|||+||++|++||+|
T Consensus 2 ri~vIGvGgAG~nivd~l~~~~~~~~~~~~~~~iAvNTd~~dL~~l~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aaee 81 (349)
T cd02202 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAEE 81 (349)
T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 59999845602899999998376567665178999988899997554788110798266666788899985999999996
Q ss_pred HHHHHHHHHCC-----CCEEEEEECCCCCCCCCHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269-----98999980367666740789999999864-9849999504300040678888999999999863
Q gi|254781176|r 88 CIDEITEMLDK-----THMCFVTAGMGGGTGTGAAPIIAKIARNK-GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETV 161 (502)
Q Consensus 88 ~~~~i~~~~~~-----~~~~~~~ag~gggtgtg~~p~ia~~a~~~-~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~ 161 (502)
+.++|.+.|++ +||||||||||||||||+||+||+++|++ +++|+++||+||.|||++|+++|.+||++|+++|
T Consensus 82 ~~~~I~~~l~~~~~~d~d~vfi~aG~GGGTGtgaapvia~~~~~~~~~~v~~vvtlPf~~EG~~r~~~A~~gl~~l~~~~ 161 (349)
T cd02202 82 DLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEA 161 (349)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 49999999842476664579999446898777633999999998259977999978864343579999999999999868
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEC--
Q ss_conf 335450278887413665318999744679999998-----8888765166555589878787641586589987614--
Q gi|254781176|r 162 DTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGV-----SCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEA-- 234 (502)
Q Consensus 162 d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v-----~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~-- 234 (502)
|++||||||||++.. .++.++|..+|+.|++.+ +|++++++.||++|+||+||+++|+++|.|+||++.+
T Consensus 162 D~livi~N~~l~~~~---~~~~~~~~~~n~~ia~~~~~l~~aG~~~~~~~~g~vnvD~aDv~~vm~~~G~a~~Gya~~~~ 238 (349)
T cd02202 162 DAIILFDNDAWKRKG---ESVEEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGYAREDL 238 (349)
T ss_pred CEEEEEECHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 889998086773157---76899999998999999998884450330566653660589999997388838861120024
Q ss_pred ---------------------CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf ---------------------862048999988752701000224555378999616888-8999999999999974168
Q gi|254781176|r 235 ---------------------SGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSD-LTLFEVDEAATRIREEVDS 292 (502)
Q Consensus 235 ---------------------~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~-~~l~e~~~~~~~i~~~~~~ 292 (502)
++.+|+..|+++|+.+||+.+.+|.||+++||+|+|+++ ++|.|+.++..+|+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~nr~~~~~~~A~~s~L~l~~di~gA~~aLv~i~GppeeLs~~ei~~~~~~iee~~g- 317 (349)
T cd02202 239 ETGPSDGKFRLREEDDEVDEKESISRITTLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGRKWLDEEIG- 317 (349)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHCC-
T ss_conf 5443321012343200112210467999999999619886887810202279999878476289999999999998679-
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEEECCCCC
Q ss_conf 863999853134657547999985135532
Q gi|254781176|r 293 EANIILGATFDEALEGVIRVSVVATGIENR 322 (502)
Q Consensus 293 ~a~ii~G~~~d~~~~~~~~v~~iatg~d~~ 322 (502)
...|+||...++. ++.|+|+||+||+.+.
T Consensus 318 ~~evr~Gdyp~~~-~d~V~v~VilsGi~~~ 346 (349)
T cd02202 318 GVEVRSGDYPVPG-GDEVAVLVLLSGISEI 346 (349)
T ss_pred CEEEECCCCCCCC-CCEEEEEEEECCCCCC
T ss_conf 8189647886899-9889999997177468
No 8
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=5.7e-42 Score=329.47 Aligned_cols=191 Identities=55% Similarity=0.746 Sum_probs=185.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1799996681479999999858998449998255788551-899704851554255678888838999999972999999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM-SKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~-~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
||+|||+||+|+|+|+.+++.+. +++|+.|||+++|+. +.++.|+.+|...++|+|+||+|++|+++++++.++|++
T Consensus 1 ki~v~g~Gg~g~r~v~~d~e~~~--i~~i~~ntd~~~l~~~~~~~~k~~~Gnn~a~G~~~gg~~~~G~~~~~~~~~~Ir~ 78 (192)
T smart00864 1 KIKVFGVGGYGPNAVLVDLEPGV--VDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIRE 78 (192)
T ss_pred CEEEEECCCCHHHHHHHHCCCCC--CEEEEECCHHHHHHCCCCCCHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96999839806789999826674--2156678409987042666216500567650565689845669999999999999
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788874
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFR 174 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~ 174 (502)
.++++|++||+||||||||||++|+||++||+++++++++|++||.|||..|..+|..+|.+|.+++|++|+++||+|++
T Consensus 79 ~le~~d~~~i~~slgGGTGsG~~~~i~~~~~e~~~~~~~~~~~Pf~~e~~~~~yna~~~l~~l~~~~d~~i~~~N~~L~~ 158 (192)
T smart00864 79 ELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLD 158 (192)
T ss_pred HHHCCCCHHEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEECHHHHHH
T ss_conf 99605611001002787766557889999997698479999633676443689999999999998589337861999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1366531899974467999999888887651665
Q gi|254781176|r 175 IANDKTTFADAFSMADQVLYSGVSCITDLMIKEG 208 (502)
Q Consensus 175 ~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g 208 (502)
++++++++..+|..+|+++++.+++|+..++.||
T Consensus 159 i~~~~~~~~~af~~~N~~ia~~is~it~~~rf~G 192 (192)
T smart00864 159 ICGRNLPIRPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8723798489999999999999988585510799
No 9
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.95 E-value=6.4e-27 Score=218.27 Aligned_cols=115 Identities=54% Similarity=0.837 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 55898787876415865899876148620489999887527010002245553789996168888999999999999974
Q gi|254781176|r 210 INLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREE 289 (502)
Q Consensus 210 in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~ 289 (502)
||+||+||+++|+++|.|+||+|+++|++|+.+|+++||+||||+..++++|+++|+||+||++++|.|+++++.+|+++
T Consensus 1 iN~DfaDl~tvl~~~g~a~~g~g~~~g~~r~~~a~~~al~~pLL~~~~i~~A~~~lv~i~~~~~~~l~ev~~~~~~i~~~ 80 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGPDLTLKEVNEAMERIREK 80 (120)
T ss_pred CCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 96767999999858985899999855888799999999748166898855760489999769999899999999999997
Q ss_pred CCCCCCEEEEEEECCCC-CCEEEEEEEEECCCCCCC
Q ss_conf 16886399985313465-754799998513553200
Q gi|254781176|r 290 VDSEANIILGATFDEAL-EGVIRVSVVATGIENRLH 324 (502)
Q Consensus 290 ~~~~a~ii~G~~~d~~~-~~~~~v~~iatg~d~~~~ 324 (502)
++++++||||.++|++| +++++||+|||||+...+
T Consensus 81 ~~~~~~i~~G~~~d~~~~~~~v~vt~iaTgi~~~~~ 116 (120)
T smart00865 81 ADPDAFIIWGPVIDEELGGDEIRVTVIATGIGSAFK 116 (120)
T ss_pred HCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCHHH
T ss_conf 489975999878998678996999999805897232
No 10
>pfam12327 FtsZ_C FtsZ family, C-terminal domain. This family includes the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea.
Probab=99.94 E-value=1.4e-26 Score=215.81 Aligned_cols=96 Identities=64% Similarity=0.965 Sum_probs=94.2
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 65899876148620489999887527010002245553789996168888999999999999974168863999853134
Q gi|254781176|r 225 GRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDE 304 (502)
Q Consensus 225 g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~ 304 (502)
|.|+||+|+++|+||+.+|+++||+|||| +.+|+|||++||||+||+|++|.|+++++++|++.++++++||||+++|+
T Consensus 1 G~A~iGiG~a~G~~ra~~Av~~Al~sPLl-d~~i~gA~~vLvni~~g~d~~l~ei~~i~~~i~~~~~~da~ii~G~~~d~ 79 (97)
T pfam12327 1 GVAMMGTGEASGEDRAEEAAEAAISSPLL-DVDLSGARGVLVNITGGPDLTLEEAEEAAERIREEVDPDANIIFGASIDP 79 (97)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCC-CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 96999989977986999999999849676-79852676799999879999999999999999987299987999689888
Q ss_pred CCCCEEEEEEEEECCCC
Q ss_conf 65754799998513553
Q gi|254781176|r 305 ALEGVIRVSVVATGIEN 321 (502)
Q Consensus 305 ~~~~~~~v~~iatg~d~ 321 (502)
+|++++||||||||||.
T Consensus 80 ~l~d~v~VtiIATG~~s 96 (97)
T pfam12327 80 ELEGEIRVTVVATGIDS 96 (97)
T ss_pred CCCCEEEEEEEEECCCC
T ss_conf 78992999999933899
No 11
>pfam00091 Tubulin Tubulin/FtsZ family, GTPase domain. This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Probab=99.93 E-value=1.2e-24 Score=201.46 Aligned_cols=170 Identities=45% Similarity=0.692 Sum_probs=156.6
Q ss_pred EEEEEECCCHHHHHHHHHH----------------------------CCCCCCEEEEECCCHHHHHHCCCCEEEEECCCC
Q ss_conf 7999966814799999998----------------------------589984499982557885518997048515542
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS----------------------------SGLQGVNFVVANTDAQALMMSKAKQIIQLGSGI 68 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~----------------------------~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~ 68 (502)
|.+||||+|||++.+.+.+ .+...+.+|.+|||.+.|..+....++..+..+
T Consensus 1 Ii~i~vGqcGnqig~~~w~~l~~e~~~~~~~~~~~~~~~~~~f~~~~~~~~~~R~i~iD~e~~~i~~~~~~~~~~~~~~~ 80 (210)
T pfam00091 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDTDPQVLNEIKAGNKLFIGNNL 80 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEECCCCCCCCCEEEECCCHHHHHHHCCCCEEECCCCE
T ss_conf 98998067399999999999999858798998412312550045767897657568965975388740363236766534
Q ss_pred CCCC-CCCCCHHHHHH----HHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCHHHHHHHHHHHC-CCEEEEEEECCC
Q ss_conf 5567-88888389999----9997299999972---6998999980367666740789999999864-984999950430
Q gi|254781176|r 69 TEGL-GAGSHPEVGRA----AAEECIDEITEML---DKTHMCFVTAGMGGGTGTGAAPIIAKIARNK-GVLTVGVVTKPF 139 (502)
Q Consensus 69 ~~g~-g~g~~~~~g~~----~a~~~~~~i~~~~---~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~-~~~~~~~v~~pf 139 (502)
+.|. |||+++..|+. ++++..+.|++.+ +..+.++++++||||||||++|.|++.+|+. ++++++++++||
T Consensus 81 ~~~~~gagnn~a~G~~~~~~~~~~~~~~irk~~E~cd~~~gf~i~~SlgGGTGSG~gs~l~~~l~~~y~~~~~~~~v~P~ 160 (210)
T pfam00091 81 TKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPF 160 (210)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 64576878780023547999999999999999982588451887722268776558999999999971971899995177
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHH
Q ss_conf 00406788889999999998633354502788874136653189-997
Q gi|254781176|r 140 HFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA-DAF 186 (502)
Q Consensus 140 ~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~-~af 186 (502)
.+|+..+.-+|..+|..|.+++|++++++|+.|+++...++.+. .+|
T Consensus 161 ~~e~~v~~yNa~lsl~~l~e~~d~~i~~dN~al~~i~~~~l~i~~~~f 208 (210)
T pfam00091 161 TSEGVVRPYNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAF 208 (210)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCCCCC
T ss_conf 511588999999999999985999999607999999998679999997
No 12
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.76 E-value=5.8e-17 Score=144.69 Aligned_cols=293 Identities=22% Similarity=0.313 Sum_probs=217.2
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCC---EEEEECCCCCCCCCCCCCHHHH-----HHHHHHH
Q ss_conf 7999966814799999998589984499982557885518997---0485155425567888883899-----9999972
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK---QIIQLGSGITEGLGAGSHPEVG-----RAAAEEC 88 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~---~~~~~g~~~~~g~g~g~~~~~g-----~~~a~~~ 88 (502)
|-.|.||.||+.+-+...+. ++.+|+|...+...+.. ....-..-++.+.|||.+.-.| ++..++-
T Consensus 2 Ii~iqvGQcGnQIG~~fWe~------~vliD~Ep~vi~~i~~~~~~~~~~~~~~i~~~~gaGnNwA~G~~~~g~~~~~~i 75 (328)
T cd00286 2 IVTIQLGQAGNQIGAKFWEQ------LVLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEI 75 (328)
T ss_pred EEEEECCCCHHHHHHHHHHH------HHEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHH
T ss_conf 79995167598999999998------881028747788884497203679513666799786670407761448889999
Q ss_pred HHHHHHHHCCCC---EEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf 999999726998---999980367666740789999999864--98499995043000406-788889999999998633
Q gi|254781176|r 89 IDEITEMLDKTH---MCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGS-RRMRVAESGIEALQETVD 162 (502)
Q Consensus 89 ~~~i~~~~~~~~---~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~-~r~~~a~~~~~~l~~~~d 162 (502)
.+.|++.++.+| -.+|+..||||||+|..+.+.+..++. +.+.+.++.+|+...+. .+--+|.-++..|.+++|
T Consensus 76 ~d~irk~~E~cD~lqgf~i~hSlgGGTGSG~gs~l~e~L~~~y~~~~~~~~~v~Ps~~~~~vvepYN~~Lsl~~L~e~~d 155 (328)
T cd00286 76 LDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSD 155 (328)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECHHHHHHHHHHHHCC
T ss_conf 98988988707887514899644887767588999999987626740531375169988623433187776899997486
Q ss_pred HHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC---CCEEEEEEEE-----
Q ss_conf 3545027888741366531899-974467999999888887651665555898787876415---8658998761-----
Q gi|254781176|r 163 TLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRN---MGRAMMGTGE----- 233 (502)
Q Consensus 163 ~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~---~g~a~~g~g~----- 233 (502)
.+++++|+.|+++....+.+.. .|.-.|.++++.+.+++.-+.-||.+|+|+.++.+-|=- -..-+.++.-
T Consensus 156 ~~~~~dN~aL~~i~~~~l~~~~p~f~~lN~lIa~~is~iT~s~RF~g~ln~dl~~l~tNLVP~PrlhFl~~s~aP~~s~~ 235 (328)
T cd00286 156 CLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEG 235 (328)
T ss_pred EEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 79982318999999973689999979999999988456752124188767567886015777875211110457535554
Q ss_pred -C-CCCCHHHHHHHHHHHCCCCC-CCCCC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC----CCCCEEEEEEECC
Q ss_conf -4-86204899998875270100-02245--55378999616888899999999999997416----8863999853134
Q gi|254781176|r 234 -A-SGHGRGIQAAEAAVANPLLD-EASMK--GSQGLLISITGGSDLTLFEVDEAATRIREEVD----SEANIILGATFDE 304 (502)
Q Consensus 234 -~-~g~~r~~~a~~~a~~~pll~-~~~~~--~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~----~~a~ii~G~~~d~ 304 (502)
. .-.-+..+...++++....- ..+.+ ..-.+++.+.| +++..||++....|+++.. --..+.+|..-.+
T Consensus 236 ~~~~~~~~~~~l~~~lf~~~n~m~~~d~~~gkyla~~~~~RG--~~~~~dv~~~i~~ik~~~~fv~W~p~~~kvgi~~~~ 313 (328)
T cd00286 236 SATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRG--PVSPSEVREGIARVAPRTSHLSWSPPGIKVGVSPTP 313 (328)
T ss_pred HCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 424466889999999838667176526998879999999818--998899999999886007677787778898750659
Q ss_pred C-CCCEEEEEEEEE
Q ss_conf 6-575479999851
Q gi|254781176|r 305 A-LEGVIRVSVVAT 317 (502)
Q Consensus 305 ~-~~~~~~v~~iat 317 (502)
- -+.+++++.+|.
T Consensus 314 P~~~~~~S~~~l~N 327 (328)
T cd00286 314 PASEHKVSALLLSN 327 (328)
T ss_pred CCCCCCEEEEEECC
T ss_conf 99887678899636
No 13
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.32 E-value=1.3e-11 Score=105.18 Aligned_cols=200 Identities=18% Similarity=0.278 Sum_probs=155.0
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCE-EEEE--CCCCCCCCCCCCCHHHHH-----HHHHHH
Q ss_conf 79999668147999999985899844999825578855189970-4851--554255678888838999-----999972
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQ-IIQL--GSGITEGLGAGSHPEVGR-----AAAEEC 88 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~-~~~~--g~~~~~g~g~g~~~~~g~-----~~a~~~ 88 (502)
|-.|=||+||+.+=+.+.+. ++-+++|...+....... +-+. -.-++..-|||.+--.|. ..-++-
T Consensus 2 iItiqiGqcGnqIG~~~w~~------~v~iD~e~~vi~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~Gy~~~g~~~~d~i 75 (382)
T cd06059 2 IISIQIGQCGNQIGNKFWEL------LILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEI 75 (382)
T ss_pred EEEEEECCCHHHHHHHHHHH------HHEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCHHHHHHH
T ss_conf 79997077299999999999------881018745788763588545778302786788863120253103448889999
Q ss_pred HHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 9999997269989---99980367666740789999999864--9849999504300040--678888999999999863
Q gi|254781176|r 89 IDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEG--SRRMRVAESGIEALQETV 161 (502)
Q Consensus 89 ~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg--~~r~~~a~~~~~~l~~~~ 161 (502)
.+.|++.++.+|- .+++-.+|||||+|-.-.+.+.-++. ....+.++..|+.... ....=++.-+|..|.+++
T Consensus 76 ~d~Irk~~E~CD~l~GF~~~~Sl~GGTGSGlGs~l~e~L~d~ypk~~~~~~~V~Ps~~~~~~vvq~YNtvLsl~~L~e~s 155 (382)
T cd06059 76 LDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENS 155 (382)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999999847886633788767998757588999999998716560653375178655776041445477589998648
Q ss_pred HHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 3354502788874136653189-997446799999988888765166555589878787641
Q gi|254781176|r 162 DTLIVIPNQNLFRIANDKTTFA-DAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMR 222 (502)
Q Consensus 162 d~~i~i~n~~l~~~~~~~~~~~-~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~ 222 (502)
|.++++.|+.|.++....+.+. -.|.-.|.++++.+.+++.-+.-||.+|.|+.++.+-|-
T Consensus 156 d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~vIa~~ls~~t~~~Rf~~~~n~~l~~l~~nLv 217 (382)
T cd06059 156 DSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLV 217 (382)
T ss_pred CEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 77898204999999997358899997999999997613566631158766876577720577
No 14
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.28 E-value=1.1e-10 Score=98.27 Aligned_cols=269 Identities=18% Similarity=0.249 Sum_probs=172.9
Q ss_pred EEEEEECCCHHHHHHHHHHC-----CC-------------------------CC---CEEEEECCCHHHHHHCCCCE---
Q ss_conf 79999668147999999985-----89-------------------------98---44999825578855189970---
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-----GL-------------------------QG---VNFVVANTDAQALMMSKAKQ--- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-----~~-------------------------~~---~~~~~~ntd~~~l~~~~~~~--- 60 (502)
|-.|-||+||+.+=+.+.+. ++ .+ ..-|.+++|.+.++......
T Consensus 3 II~iqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRavliD~E~~vI~~i~~~~~~~ 82 (431)
T cd02188 3 IITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRN 82 (431)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89995377298999999999999858698998777766555554423788899977367799989816898884686514
Q ss_pred -----EEEECCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC-
Q ss_conf -----48515542556788888389----999999729999997269989---99980367666740789999999864-
Q gi|254781176|r 61 -----IIQLGSGITEGLGAGSHPEV----GRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK- 127 (502)
Q Consensus 61 -----~~~~g~~~~~g~g~g~~~~~----g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~- 127 (502)
-+..+ +++.|||.+--. |.+.-++-.+.||+.++.+|- .+++-.||||||+|-.-.|.+.-++.
T Consensus 83 lf~~~n~~~~---~~~~gsgnNwA~GY~~G~~~~d~i~d~irk~~E~cD~l~gf~~~~Sl~GGTGSGlgs~l~e~l~d~y 159 (431)
T cd02188 83 LYNPENIFLS---KHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred CCCCCCEEEE---CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 4385437983---4578876644756454399899999999999980887565688974488675408999999999871
Q ss_pred -CCEEEEEEECCCCC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf -98499995043000-4067--888899999999986333545027888741366531899-974467999999888887
Q gi|254781176|r 128 -GVLTVGVVTKPFHF-EGSR--RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITD 202 (502)
Q Consensus 128 -~~~~~~~v~~pf~~-eg~~--r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~ 202 (502)
......++..|... .|.. -.=++.-.|..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.
T Consensus 160 p~~~i~~~~V~P~~~~~~~vivqpYNsvLsl~~L~e~sd~v~~~dN~aL~~i~~~~l~~~~~~~~~~N~vIa~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CCCEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 50307568986688666770433236465378898608656862538899999985599998878899999998603553
Q ss_pred HHHCCCCCCCCHHHHHHHHC-CCCEEEEEEEECC-----CCCH-----HHHHHHHHHH--CCCCCCCCCCCCCEEE---E
Q ss_conf 65166555589878787641-5865899876148-----6204-----8999988752--7010002245553789---9
Q gi|254781176|r 203 LMIKEGLINLDFADVRSVMR-NMGRAMMGTGEAS-----GHGR-----GIQAAEAAVA--NPLLDEASMKGSQGLL---I 266 (502)
Q Consensus 203 ~i~~~g~in~df~d~~~v~~-~~g~a~~g~g~~~-----g~~r-----~~~a~~~a~~--~pll~~~~~~~a~~~l---~ 266 (502)
-+.-||.+|.|+.++.+=|- ....-.+-..-+. .... ..+...+.+. +-++. .... .++.. .
T Consensus 240 ~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~-~~~~-~~~~~ls~~ 317 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVS-TATR-KNGCYISIL 317 (431)
T ss_pred CEECCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCCEEE-CCCC-CCCHHHHHH
T ss_conf 12358634765899976068875532210145665343210124038899999997482466562-3688-785577779
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9616888899999999999997416
Q gi|254781176|r 267 SITGGSDLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 267 ~i~~~~~~~l~e~~~~~~~i~~~~~ 291 (502)
++.-| ++...++.+....++..-.
T Consensus 318 ~~~RG-~~~~~~~~~~~~~~~~~~~ 341 (431)
T cd02188 318 NIIQG-EVDPTQVHKSLQRIRERRL 341 (431)
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHCC
T ss_conf 98848-9887899999999987367
No 15
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.22 E-value=1.9e-10 Score=96.47 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=176.7
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC---------------------------C---CEEEEECCCHHHHHHCCCCE-
Q ss_conf 7999966814799999998-----5899---------------------------8---44999825578855189970-
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ---------------------------G---VNFVVANTDAQALMMSKAKQ- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~---------------------------~---~~~~~~ntd~~~l~~~~~~~- 60 (502)
|-.|=||+||+.+=+...+ .++. + ..-|.+++|.+.++......
T Consensus 3 II~iqvGQcGnQIG~~fW~~~~~EH~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavliD~E~~vI~~i~~~~~ 82 (434)
T cd02186 3 VISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTY 82 (434)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 89995376199999999999999848698988068766543212111247778999872677999897578888847764
Q ss_pred -EEEE-CCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C
Q ss_conf -4851-5542556788888389-----999999729999997269989---99980367666740789999999864--9
Q gi|254781176|r 61 -IIQL-GSGITEGLGAGSHPEV-----GRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G 128 (502)
Q Consensus 61 -~~~~-g~~~~~g~g~g~~~~~-----g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~ 128 (502)
++.- -.-++..-|||.+--. |....++-.|.|++.++.+|- .+++-.||||||+|-.-.|.+.-|+. .
T Consensus 83 ~~lf~~~~~i~~~~gaGNNwA~Gy~~~G~~~~d~i~d~IRkevE~CD~l~gf~~~hSl~GGTGSGlGs~lle~L~d~yp~ 162 (434)
T cd02186 83 RQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGK 162 (434)
T ss_pred CCCCCCHHEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 01268300455689976677006552355578899999999997389866436785368876232999999998765551
Q ss_pred CEEEEEEECCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8499995043000406--7888899999999986333545027888741366531899-974467999999888887651
Q gi|254781176|r 129 VLTVGVVTKPFHFEGS--RRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 129 ~~~~~~v~~pf~~eg~--~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~ 205 (502)
...+.++.+|..--+. .-.=++.-.|..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.-+.
T Consensus 163 ~~~~~~sV~Ps~~~~~~vvepYNsvLsl~~L~e~sd~~~~~dN~aL~~i~~~~l~i~~ps~~~~N~vIa~~is~~T~~~R 242 (434)
T cd02186 163 KSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLR 242 (434)
T ss_pred CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 10544478558656785032244044366687418569996449999999984699999878999999998258876555
Q ss_pred CCCCCCCCHHHHHHHHCC-CCEEEEEEEECC----C----CCHHHHHHHHHHHCCC--CCCCCCCCCCEEE--EEEECCC
Q ss_conf 665555898787876415-865899876148----6----2048999988752701--0002245553789--9961688
Q gi|254781176|r 206 KEGLINLDFADVRSVMRN-MGRAMMGTGEAS----G----HGRGIQAAEAAVANPL--LDEASMKGSQGLL--ISITGGS 272 (502)
Q Consensus 206 ~~g~in~df~d~~~v~~~-~g~a~~g~g~~~----g----~~r~~~a~~~a~~~pl--l~~~~~~~a~~~l--~~i~~~~ 272 (502)
-||.+|.|+.++.+-|-- .-.-.+-.+-+. . .......+-..+-+|- +-..+.+..|-+- +-+.|
T Consensus 243 f~g~ln~dl~~l~~nLvP~P~l~f~~~s~~P~~~~~~~~~~~~~~~~l~~~lf~~~~~~~~~~~~~~~~ls~~~~~RG-- 320 (434)
T cd02186 243 FDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG-- 320 (434)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHCCHHCEECCCCCCCCHHHHHHHHHC--
T ss_conf 786557688998405788865301221477425756652012769999998733032116568999708889998807--
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 8899999999999997416
Q gi|254781176|r 273 DLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 273 ~~~l~e~~~~~~~i~~~~~ 291 (502)
++...+++++...++.+-.
T Consensus 321 ~~~~~~~~~~~~~l~~~~~ 339 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRT 339 (434)
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 9876789999999997468
No 16
>PTZ00012 alpha-tubulin II; Provisional
Probab=99.22 E-value=2e-10 Score=96.32 Aligned_cols=206 Identities=15% Similarity=0.251 Sum_probs=150.0
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC------------------CC------------EEEEECCCHHHHHHCCCCE-
Q ss_conf 7999966814799999998-----5899------------------84------------4999825578855189970-
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ------------------GV------------NFVVANTDAQALMMSKAKQ- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~------------------~~------------~~~~~ntd~~~l~~~~~~~- 60 (502)
|-.|-||+||+.+=+.+.+ .+++ .+ .-|.+++|...++......
T Consensus 4 IItiqvGQcGnQIG~~fW~~~~~EH~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~ 83 (450)
T PTZ00012 4 VISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDQVVAGGDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTY 83 (450)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 99995277199999999999999729797899575433456765544426678999650567999787317888846884
Q ss_pred EEEECC--CCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C
Q ss_conf 485155--4255678888838-----9999999729999997269989---99980367666740789999999864--9
Q gi|254781176|r 61 IIQLGS--GITEGLGAGSHPE-----VGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G 128 (502)
Q Consensus 61 ~~~~g~--~~~~g~g~g~~~~-----~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~ 128 (502)
+=+.-+ -++..-|||.+-- .|.+.-++-.+.|++.++.+|- .+++--||||||+|..-.|.+.-++- .
T Consensus 84 ~~lf~~~~~i~~~~gsgNNwa~Gy~~~G~~~~d~i~e~irk~~E~cD~l~gf~~~hSl~GGTGSGlgs~l~e~L~d~yp~ 163 (450)
T PTZ00012 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDVCLDRVRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLAIDYGK 163 (450)
T ss_pred CCCCCCCCEEECCCCCCCCEEEECEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 01368442745688875566520110546778899999999997088877646672268877431999999998876574
Q ss_pred CEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8499995043000--4067888899999999986333545027888741366531899-974467999999888887651
Q gi|254781176|r 129 VLTVGVVTKPFHF--EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 129 ~~~~~~v~~pf~~--eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~ 205 (502)
...+.++..|+.- +--.--=++.-.+..|.+++|.++++.|+-|.++...++.+.. .|.-.|.++++.+.+++.-+.
T Consensus 164 ~~~~~~~v~Ps~~~~~~vv~pYN~~Lsl~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~psf~~~N~lIaq~is~~Tss~R 243 (450)
T PTZ00012 164 KSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYTNLNRLIAQVISSLTASLR 243 (450)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 50432686178766785231440210223467528569982009999999985699999978999999988268753234
Q ss_pred CCCCCCCCHHHHHHHHC
Q ss_conf 66555589878787641
Q gi|254781176|r 206 KEGLINLDFADVRSVMR 222 (502)
Q Consensus 206 ~~g~in~df~d~~~v~~ 222 (502)
-||.+|.|+.++.+-|-
T Consensus 244 F~g~ln~dl~el~tnLv 260 (450)
T PTZ00012 244 FDGALNVDVTEFQTNLV 260 (450)
T ss_pred CCCCCCCCHHHHHHCCC
T ss_conf 67645778899843579
No 17
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.22 E-value=1.6e-10 Score=97.14 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=151.5
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC----------------C------------CEEEEECCCHHHHHHCCCCE-EE
Q ss_conf 7999966814799999998-----5899----------------8------------44999825578855189970-48
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ----------------G------------VNFVVANTDAQALMMSKAKQ-II 62 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~----------------~------------~~~~~~ntd~~~l~~~~~~~-~~ 62 (502)
|-.|=||+||+.+=+.+.+ .++. + ..-+.+++|.+.++...... +=
T Consensus 3 IItiqvGQcGnQIG~~~W~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vI~~i~~~~~~~ 82 (425)
T cd02187 3 IVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQ 82 (425)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89997268599999999999999838898988778753000014540566799977146799988754898986487646
Q ss_pred EECC--CCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCE
Q ss_conf 5155--425567888883899-----99999729999997269989---99980367666740789999999864--984
Q gi|254781176|r 63 QLGS--GITEGLGAGSHPEVG-----RAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVL 130 (502)
Q Consensus 63 ~~g~--~~~~g~g~g~~~~~g-----~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~ 130 (502)
+..+ -++.--|||.+--.| ...-++-.+.|++.++.+|- .+++-.||||||+|-.-.|.+.-++. ...
T Consensus 83 lf~~~n~i~~~~gagNNwa~Gy~~~G~~~~d~i~d~Irk~~E~cD~l~gf~i~~Sl~GGTGSGlGs~lle~L~d~yp~~~ 162 (425)
T cd02187 83 LFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 162 (425)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 64876466668872022135000346888999999999999848986756899865887765188999999986637353
Q ss_pred EEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999504300--0406788889999999998633354502788874136653189-997446799999988888765166
Q gi|254781176|r 131 TVGVVTKPFH--FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA-DAFSMADQVLYSGVSCITDLMIKE 207 (502)
Q Consensus 131 ~~~~v~~pf~--~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~-~af~~~d~~l~~~v~~i~~~i~~~ 207 (502)
...++..|+. -|--.-.=++.-.|..|.+++|.++++.|+.|.++....+.+. -.|.-.|.++++.+.+++..+.-|
T Consensus 163 ~~~~~V~P~~~~~~~vvq~YNsvLsl~~L~e~~d~~~~fdN~aL~~i~~~~l~~~~~~~~~~N~vIa~~ls~~t~~~Rf~ 242 (425)
T cd02187 163 MATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFP 242 (425)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77779846887788601133657667888850876999443999999998638999997999999999861354446687
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 55558987878764
Q gi|254781176|r 208 GLINLDFADVRSVM 221 (502)
Q Consensus 208 g~in~df~d~~~v~ 221 (502)
|.+|.|+.++.+-|
T Consensus 243 g~ln~~l~~l~~nL 256 (425)
T cd02187 243 GQLNSDLRKLAVNM 256 (425)
T ss_pred CCCCCCHHHHHHCC
T ss_conf 54465789996337
No 18
>PTZ00010 beta tubulin; Provisional
Probab=99.21 E-value=4.4e-10 Score=93.80 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=173.4
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC-------------------------C---CEEEEECCCHHHHHHCCC-----
Q ss_conf 7999966814799999998-----5899-------------------------8---449998255788551899-----
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ-------------------------G---VNFVVANTDAQALMMSKA----- 58 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~-------------------------~---~~~~~~ntd~~~l~~~~~----- 58 (502)
|-.|-||+||+.+=+.+.+ .++. + ..-|.+++|.+.++....
T Consensus 4 IItiqvGQcGnQIG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRavliD~e~~vi~~i~~~~~~~ 83 (443)
T PTZ00010 4 IVSCQAGQCGNQIGSKFWEVISDEHGVDPTGSYQGDSDLQLERINVYFDEAAGGRYVPRAVLMDLEPGTMDSVRAGPYGQ 83 (443)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHCCCCCC
T ss_conf 89995167799999999999999739998988478753231135542666789966156799988801788885587533
Q ss_pred ---CEEEEECCCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf ---70485155425567888883899-----99999729999997269989---99980367666740789999999864
Q gi|254781176|r 59 ---KQIIQLGSGITEGLGAGSHPEVG-----RAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK 127 (502)
Q Consensus 59 ---~~~~~~g~~~~~g~g~g~~~~~g-----~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~ 127 (502)
+..+..|. -|||.+--.| .+.-++-.+.|++.++.+|- .+++-.||||||+|-.-.|.+.-++.
T Consensus 84 ~f~~~~~~~~~-----~gsgnnwa~Gy~~~G~~~~~~i~d~irk~~E~cD~l~GF~i~hSl~GGTGSGlGs~l~e~L~d~ 158 (443)
T PTZ00010 84 LFRPDNFIFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQLSHSLGGGTGSGMGTLLISKLREE 158 (443)
T ss_pred CCCCCCEEECC-----CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 44766378656-----7875634401433557889999999999998078767558895268877661889999999865
Q ss_pred --CCEEEEEEECCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf --984999950430-0-0406788889999999998633354502788874136653189-9974467999999888887
Q gi|254781176|r 128 --GVLTVGVVTKPF-H-FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA-DAFSMADQVLYSGVSCITD 202 (502)
Q Consensus 128 --~~~~~~~v~~pf-~-~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~-~af~~~d~~l~~~v~~i~~ 202 (502)
..+.+.++..|. . -+--.-.=++.-.|..|.+++|.++++.|+.|.++....+.+. ..|.-.|.++++.+.+++.
T Consensus 159 yp~~~~~~~sV~Ps~~~~dvvvqpYNsvLsl~~L~e~sD~v~~~dN~aL~~ic~~~l~i~~~sf~d~N~vIa~~ls~~T~ 238 (443)
T PTZ00010 159 YPDRIMMTFSVIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVMSGVTC 238 (443)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 15003877787068866786365546577788998727741544638999999986489998856799999998534554
Q ss_pred HHHCCCCCCCCHHHHHHHHCC-CCEEEEEEEECC--------CCCH-HHHHHHHHHHC-CCCCCCCCCCCCEEEEEEECC
Q ss_conf 651665555898787876415-865899876148--------6204-89999887527-010002245553789996168
Q gi|254781176|r 203 LMIKEGLINLDFADVRSVMRN-MGRAMMGTGEAS--------GHGR-GIQAAEAAVAN-PLLDEASMKGSQGLLISITGG 271 (502)
Q Consensus 203 ~i~~~g~in~df~d~~~v~~~-~g~a~~g~g~~~--------g~~r-~~~a~~~a~~~-pll~~~~~~~a~~~l~~i~~~ 271 (502)
-+.-||.+|.|+.++.+-|-- .-.-.+...-+. -... ..+-..+.++. ..+-..+.+..+-+-..+.-.
T Consensus 239 s~Rf~g~ln~dl~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~ls~~~~~R 318 (443)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVAELTQQMFDAKNMMQAADPRHGRYLTASALFR 318 (443)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHC
T ss_conf 46687423655898502577787622100254565565432322266999999974731362314898871444567662
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999999974
Q gi|254781176|r 272 SDLTLFEVDEAATRIREE 289 (502)
Q Consensus 272 ~~~~l~e~~~~~~~i~~~ 289 (502)
-++...++++....++..
T Consensus 319 G~~~~~~i~~~~~~~~~k 336 (443)
T PTZ00010 319 GRMSTKEVDEQMLNVQNK 336 (443)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 888657899999998612
No 19
>PTZ00335 alpha tubulin; Provisional
Probab=99.19 E-value=4.4e-10 Score=93.86 Aligned_cols=205 Identities=15% Similarity=0.243 Sum_probs=149.5
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC--C----------------------------CEEEEECCCHHHHHHCCCCE-
Q ss_conf 7999966814799999998-----5899--8----------------------------44999825578855189970-
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ--G----------------------------VNFVVANTDAQALMMSKAKQ- 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~--~----------------------------~~~~~~ntd~~~l~~~~~~~- 60 (502)
|-.|=||+||+.+=+.+.+ .++. | ..-|.+++|.+.++......
T Consensus 4 iItiqvGqcGnqIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRavliD~e~~vi~~i~~~~~ 83 (451)
T PTZ00335 4 AICIHIGQAGCQVGNACWELFCLEHGIQPDGSMPSDKCIGVEDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTY 83 (451)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 89996177199999999999999729897998677665454566532157567999753667998587768889856874
Q ss_pred EEEECC--CCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C
Q ss_conf 485155--42556788888389-----999999729999997269989---99980367666740789999999864--9
Q gi|254781176|r 61 IIQLGS--GITEGLGAGSHPEV-----GRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G 128 (502)
Q Consensus 61 ~~~~g~--~~~~g~g~g~~~~~-----g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~ 128 (502)
+=+.-. -++..-|||.+-.. |.+.-++-.+.|++.++.+|- .+++-.||||||+|-.-.|.+.-++. .
T Consensus 84 ~~lf~~~~~~~~~~gsgNnwa~Gy~~~G~~~~d~i~d~irk~~E~cD~l~gf~~~hSl~GGTGSGlgs~l~e~l~~~yp~ 163 (451)
T PTZ00335 84 RQLFNPEQLVSGKEDAANNYARGHYTIGKEIVDLALDRIRKLADNCTGLQGFMVFHAVGGGTGSGLGALLLERLSVDYGK 163 (451)
T ss_pred CCCCCCCCEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 12458653222679977666116662250427899999999997088867667884068866435999999998765354
Q ss_pred CEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 849999504300--04067888899999999986333545027888741366531899-974467999999888887651
Q gi|254781176|r 129 VLTVGVVTKPFH--FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 129 ~~~~~~v~~pf~--~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~ 205 (502)
...+.++..|.. .+.-.--=++.-+|..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.-+.
T Consensus 164 ~~~~~~~V~Ps~~~s~~vvqpYNsvLsl~~L~e~sD~v~~~dN~aL~~i~~~~l~i~~ps~~~iN~lIaq~is~~T~s~R 243 (451)
T PTZ00335 164 KSKLGYTVYPSPQVSTAVVEPYNCVLSTHSLLEHTDVATMLDNEAIYDLTRRSLDIERPSYTNVNRLIGQVVSSLTASLR 243 (451)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 41310477358656786040450145577788608647995579999999974689999878999999999628873466
Q ss_pred CCCCCCCCHHHHHHHH
Q ss_conf 6655558987878764
Q gi|254781176|r 206 KEGLINLDFADVRSVM 221 (502)
Q Consensus 206 ~~g~in~df~d~~~v~ 221 (502)
-||.+|.|+.++.+-|
T Consensus 244 F~g~ln~dl~~l~~nL 259 (451)
T PTZ00335 244 FDGALNVDLTEFQTNL 259 (451)
T ss_pred CCCCCCCCHHHHHHCC
T ss_conf 7754578889984248
No 20
>PTZ00011 alpha tubulin I; Provisional
Probab=99.16 E-value=4.6e-10 Score=93.72 Aligned_cols=206 Identities=16% Similarity=0.252 Sum_probs=149.7
Q ss_pred EEEEEECCCHHHHHHHHHH-----CCCC------------------C------------CEEEEECCCHHHHHHCCCC-E
Q ss_conf 7999966814799999998-----5899------------------8------------4499982557885518997-0
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS-----SGLQ------------------G------------VNFVVANTDAQALMMSKAK-Q 60 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~-----~~~~------------------~------------~~~~~~ntd~~~l~~~~~~-~ 60 (502)
|-.|=||+||+.+=+...+ .++. + ..-|-+++|.+.++..... .
T Consensus 4 IItiqvGQcGnQIG~~fW~~~~~Eh~i~~dg~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavliD~E~~vi~~i~~~~~ 83 (453)
T PTZ00011 4 VISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKAARANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTY 83 (453)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf 89996277299999999999999719798998477654545555532315667999662667999898107767626764
Q ss_pred EEEECCC--CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C
Q ss_conf 4851554--255678888838-----9999999729999997269989---99980367666740789999999864--9
Q gi|254781176|r 61 IIQLGSG--ITEGLGAGSHPE-----VGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G 128 (502)
Q Consensus 61 ~~~~g~~--~~~g~g~g~~~~-----~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~ 128 (502)
+=+.-++ ++..-|||.+-- .|.+.-++-.+.|++.++.+|- .+++-.||||||+|-.-.|.+.-++- .
T Consensus 84 ~~lf~~~~~i~~~~gagNNwa~Gy~~~G~~~~d~i~d~iRk~vE~CD~l~gf~~~hSl~GGTGSGlgs~lle~L~d~yp~ 163 (453)
T PTZ00011 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGK 163 (453)
T ss_pred CCCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 12368755643678877667778774152568899999999987088867755652578887434999999987865575
Q ss_pred CEEEEEEECCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 849999504300--04067888899999999986333545027888741366531899-974467999999888887651
Q gi|254781176|r 129 VLTVGVVTKPFH--FEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 129 ~~~~~~v~~pf~--~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~ 205 (502)
...+.++..|+. .+--.--=++.-.+..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.-+.
T Consensus 164 ~~~~~~~v~Ps~~~~~~vvepYNs~Lsl~~l~e~~d~~~~~dN~AL~~ic~~~l~i~~psf~~~N~lIAq~is~~T~s~R 243 (453)
T PTZ00011 164 KSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYTNLNRLIAQVISSLTASLR 243 (453)
T ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 51312488578766787252534144346678518568970638899999985699999877899999999648863466
Q ss_pred CCCCCCCCHHHHHHHHC
Q ss_conf 66555589878787641
Q gi|254781176|r 206 KEGLINLDFADVRSVMR 222 (502)
Q Consensus 206 ~~g~in~df~d~~~v~~ 222 (502)
-||.+|.|+..+.+-|-
T Consensus 244 F~g~ln~dl~~l~tnLV 260 (453)
T PTZ00011 244 FDGALNVDVTEFQTNLV 260 (453)
T ss_pred CCCCCCCCHHHHHHCCC
T ss_conf 78645788899833579
No 21
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.16 E-value=2.5e-09 Score=88.27 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=171.8
Q ss_pred EEEEEECCCHHHHHHHHHH----CCCCCCEEEEECCCHHHHHHCC-CCEEEEECC--CCCCCCCCCCCHHHHH-----HH
Q ss_conf 7999966814799999998----5899844999825578855189-970485155--4255678888838999-----99
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS----SGLQGVNFVVANTDAQALMMSK-AKQIIQLGS--GITEGLGAGSHPEVGR-----AA 84 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~----~~~~~~~~~~~ntd~~~l~~~~-~~~~~~~g~--~~~~g~g~g~~~~~g~-----~~ 84 (502)
|-.|=||+||+.+=+...+ ..+. ..-+.+++|...+.... .+.+-+..+ -++..-|||.+--.|+ +.
T Consensus 3 IItiqvGQcGnQIG~~fw~~~~~Eh~~-~RavliD~e~~vi~~i~~~~~~~~~~~~~~~~~~~gsGNNwa~Gy~~~G~~~ 81 (379)
T cd02190 3 IIVVQVGQCGNQIGCRFWDLALREHLK-ARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQY 81 (379)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCHHH
T ss_conf 899944785889999999999971374-3379998881168888557641447821166479985021114010321989
Q ss_pred HHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHH--HHHHHHHHHHHH
Q ss_conf 99729999997269989---99980367666740789999999864--984999950430004067--888899999999
Q gi|254781176|r 85 AEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSR--RMRVAESGIEAL 157 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~--r~~~a~~~~~~l 157 (502)
.++-.+.|++.++.+|- .+++-.||||||+|-.-.|.+.-|+. ....+.++..|+.. |.. --=++.-.|..|
T Consensus 82 ~d~i~d~IrkevE~CD~l~Gf~~~hSl~GGTGSGlGs~l~e~L~d~ypk~~i~~~~V~Ps~~-~~vvvqpYNsvLsl~~L 160 (379)
T cd02190 82 IDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD-DDVITSPYNSVLALREL 160 (379)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCCCCCCHHHHHHHHH
T ss_conf 99999999999971699676457730488776518888789889766985140258516889-98413254778778888
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCE-EEEEEEECCC
Q ss_conf 986333545027888741366531899974467999999888887651665555898787876415865-8998761486
Q gi|254781176|r 158 QETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGR-AMMGTGEASG 236 (502)
Q Consensus 158 ~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~-a~~g~g~~~g 236 (502)
.+++|+++++.|+.|. .|.-.|.++++.+.+++.-+.-||.+|.|+.++.+-|----. -.+-...+.=
T Consensus 161 ~e~sD~i~~~dN~al~-----------~~~~iN~~Ia~~ls~~t~~~Rf~g~~n~~l~~l~~nLvP~P~~~fl~~s~~P~ 229 (379)
T cd02190 161 IEHADCVLPIENQALV-----------PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPL 229 (379)
T ss_pred HHCCCEEEEEEHHHHH-----------HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf 7407479994156543-----------14777899999975035534268645888889965569986625455200355
Q ss_pred ---------CCHHHHHHHHHHHC--CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ---------20489999887527--01000224555378999616888899999999999997416
Q gi|254781176|r 237 ---------HGRGIQAAEAAVAN--PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 237 ---------~~r~~~a~~~a~~~--pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~ 291 (502)
.-+....+...++. -++ ..+.+..+-+-..+..--++...++......++....
T Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~ 294 (379)
T cd02190 230 YPLADVNVPPRRLDQMFSDAFSRNHQLI-RADPKHGLYLACALLVRGNVSVSDLRRNIERLKPKLK 294 (379)
T ss_pred CCHHHHCCCCCCHHHHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6444403446669999999738000377-4078886201458776079877999999999861303
No 22
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.10 E-value=2.8e-09 Score=87.93 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=139.8
Q ss_pred EEEEEECCCHHHHHHHHHHC-----C------------------------CCCCEEEEECCCHHHHHHCCCC-EEEE--E
Q ss_conf 79999668147999999985-----8------------------------9984499982557885518997-0485--1
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-----G------------------------LQGVNFVVANTDAQALMMSKAK-QIIQ--L 64 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-----~------------------------~~~~~~~~~ntd~~~l~~~~~~-~~~~--~ 64 (502)
|-.|-||+||+.+=+.+.+. + -.-..-|.+++|-..++..... .+-+ +
T Consensus 2 II~iqvGQcGnQIG~~fW~~l~~E~~~~~~~~~~~~~~~~~~ff~e~~~~~~vpRavliD~Ep~vI~~i~~~~~~~~~~~ 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 78997487499999999999997318897766455543300000055699650577999887238999856665554667
Q ss_pred CC--CCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--CCEEE
Q ss_conf 55--425567888883-----89999999729999997269989---99980367666740789999999864--98499
Q gi|254781176|r 65 GS--GITEGLGAGSHP-----EVGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--GVLTV 132 (502)
Q Consensus 65 g~--~~~~g~g~g~~~-----~~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~ 132 (502)
-+ -++..-|||.+- ..|.+.-++-.+.||+.++.+|- .+++-.||||||+|-.-.|.+.-++. ....+
T Consensus 82 ~~~n~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~IRk~~E~CD~lqGF~i~hSlgGGTGSGlGs~lle~L~d~yp~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CCCCEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 85307877878522104530042588899999999999973577576677840578675417778889988766875056
Q ss_pred EEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 995043000-4067888899999999986333545027888741366531899-97446799999988888765166555
Q gi|254781176|r 133 GVVTKPFHF-EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIKEGLI 210 (502)
Q Consensus 133 ~~v~~pf~~-eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~~g~i 210 (502)
.++..|+.. |-..-.=++.-.+..|.+++|.++++.|+.|.++....+.... .|.-.|.++++.+.+++--+...+..
T Consensus 162 ~~~V~P~~~~evvvepYNs~Lsl~~L~e~sD~v~~~dN~aL~~i~~~~~~~~~~~~~~lN~~Ia~~ls~~~~p~~~~~~~ 241 (446)
T cd02189 162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGS 241 (446)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 68960577886200125307778889852763466118889999998548999986789999999985113434357764
Q ss_pred CCCHHH
Q ss_conf 589878
Q gi|254781176|r 211 NLDFAD 216 (502)
Q Consensus 211 n~df~d 216 (502)
+.+|..
T Consensus 242 ~~~~~~ 247 (446)
T cd02189 242 NGALAG 247 (446)
T ss_pred CCCCHH
T ss_conf 555502
No 23
>COG5023 Tubulin [Cytoskeleton]
Probab=98.73 E-value=1.2e-07 Score=75.96 Aligned_cols=229 Identities=20% Similarity=0.289 Sum_probs=158.7
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE---EEEECCCCCCCCCHH-HHHHHHHHHC---CCEE
Q ss_conf 70485155425567888883899999997299999972699899---998036766674078-9999999864---9849
Q gi|254781176|r 59 KQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMC---FVTAGMGGGTGTGAA-PIIAKIARNK---GVLT 131 (502)
Q Consensus 59 ~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~---~~~ag~gggtgtg~~-p~ia~~a~~~---~~~~ 131 (502)
|..+.+|++--.--=|-|.-.+|++-...-.+.|++..+++|=+ -|+--+|||||+|-. -.+-+++-+. =++|
T Consensus 87 Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~t 166 (443)
T COG5023 87 PENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLT 166 (443)
T ss_pred CHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHEEE
T ss_conf 02257625676554434553137777788999999875057530001355521686753378999999998622424257
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99950430004067888899999999986333545027888741366531899-97446799999988888765166555
Q gi|254781176|r 132 VGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIKEGLI 210 (502)
Q Consensus 132 ~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~~g~i 210 (502)
.+|..-|=..+--.---++.-.+.+|-.++|++.+++|.-|+.+..+++.+.. .|.--|.++++.+.+++.-|.-||.+
T Consensus 167 fSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~l 246 (443)
T COG5023 167 FSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLRFPGYL 246 (443)
T ss_pred EEECCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCC
T ss_conf 87426876576043140778889989862785699550899999998556899986889999999997401105447503
Q ss_pred CCCHHHHHHHHCCCCEEEE-EEEECC--C-CCHHH-HHHHHHHHCCCCC-CCCCCCC---CEEEEEE----ECCCCCCHH
Q ss_conf 5898787876415865899-876148--6-20489-9998875270100-0224555---3789996----168888999
Q gi|254781176|r 211 NLDFADVRSVMRNMGRAMM-GTGEAS--G-HGRGI-QAAEAAVANPLLD-EASMKGS---QGLLISI----TGGSDLTLF 277 (502)
Q Consensus 211 n~df~d~~~v~~~~g~a~~-g~g~~~--g-~~r~~-~a~~~a~~~pll~-~~~~~~a---~~~l~~i----~~~~~~~l~ 277 (502)
|.|+.-+.+-|--.-..++ -.+.+. . ..++. +..-.-+.+-||+ .+.+-.+ ++-.+++ .| +....
T Consensus 247 n~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG--~v~~~ 324 (443)
T COG5023 247 NVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRG--DVDPR 324 (443)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHHHC--CCCHH
T ss_conf 2039999860777876301224557420114777760669999999737602336515888711114677726--87789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999974
Q gi|254781176|r 278 EVDEAATRIREE 289 (502)
Q Consensus 278 e~~~~~~~i~~~ 289 (502)
||+.++..|+++
T Consensus 325 dV~~a~~~v~~k 336 (443)
T COG5023 325 DVSRAVTRVQSK 336 (443)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999853
No 24
>TIGR03483 FtsZ_alphas_C cell division protein FtsZ, alphaProteobacterial C-terminal extension. This model describes a domain found as a C-terminal extension to the cell division protein FtsZ in many but not all members of the alphaProteobacteria.
Probab=98.02 E-value=1.1e-06 Score=68.59 Aligned_cols=20 Identities=60% Similarity=0.926 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCHHHCCCCC
Q ss_conf 56321000253202203679
Q gi|254781176|r 483 TVKCEEDKLEIPAFLRRQSH 502 (502)
Q Consensus 483 ~~e~EEDdLEIPAFLRRQAN 502 (502)
....+||.||||||||||||
T Consensus 102 ~~~~eDDQLEIPAFLRRQAN 121 (121)
T TIGR03483 102 RAMQEDDQLEIPAFLRRQAN 121 (121)
T ss_pred CCCCCCCCCCCHHHHHHCCC
T ss_conf 78885420101387761259
No 25
>KOG1374 consensus
Probab=97.93 E-value=3.2e-05 Score=57.92 Aligned_cols=163 Identities=25% Similarity=0.328 Sum_probs=114.8
Q ss_pred CCCCCCCCHH----HHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHHC--C--CEEEEEEECC
Q ss_conf 5678888838----9999999729999997269989---99980367666740789999999864--9--8499995043
Q gi|254781176|r 70 EGLGAGSHPE----VGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGAAPIIAKIARNK--G--VLTVGVVTKP 138 (502)
Q Consensus 70 ~g~g~g~~~~----~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~~p~ia~~a~~~--~--~~~~~~v~~p 138 (502)
.|-|||-+=- +|.+--++=.+.|.+..+++|= .|++--+-||||+|-..-+-+-.++. . +-|-.| .|
T Consensus 96 ~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysV--fP 173 (448)
T KOG1374 96 HGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSV--FP 173 (448)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHEEEEE--CC
T ss_conf 7887666532234233356788999998751277761333678750477776567999999987530535216665--56
Q ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 0004067---888899999999986333545027888741366531899-974467999999888887651665555898
Q gi|254781176|r 139 FHFEGSR---RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITDLMIKEGLINLDF 214 (502)
Q Consensus 139 f~~eg~~---r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~~i~~~g~in~df 214 (502)
-.-|-.- ---+.--.|.+|-+.+|+++|++|.-|..++..++-+.. .|..-|.++++.....+.-+.-||++|=++
T Consensus 174 n~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l 253 (448)
T KOG1374 174 NQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSASTTTLRYPGYMNNDL 253 (448)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCH
T ss_conf 89875645873316788899886288859994328888888887158999888999999999860365301604216757
Q ss_pred HHHHHHHCCCCE-EEEEEEEC
Q ss_conf 787876415865-89987614
Q gi|254781176|r 215 ADVRSVMRNMGR-AMMGTGEA 234 (502)
Q Consensus 215 ~d~~~v~~~~g~-a~~g~g~~ 234 (502)
-++-.-|--.-. -++-+|..
T Consensus 254 ~~l~~~LiP~P~lhfl~~~~t 274 (448)
T KOG1374 254 IGLYASLIPTPELHFLMTGYT 274 (448)
T ss_pred HHHHHHCCCCCCEEEEECCCC
T ss_conf 778760389987046403577
No 26
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.67 E-value=0.014 Score=38.48 Aligned_cols=105 Identities=24% Similarity=0.401 Sum_probs=63.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC--CC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8617999966814799999998589984499982--55---788551899704851554255678888838999999972
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVAN--TD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n--td---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
+.||.|||.|.-|..+...+...++. +++.++ .+ .++|+.+.+.... +.. ++=.| .+|
T Consensus 7 ~~KV~IIGaG~VG~~~A~~l~~~~l~--eivLiDi~~~~a~g~a~Dl~h~~~~~--~~~-~~v~~-~~d----------- 69 (322)
T PTZ00082 7 RKKISLIGSGNIGGVMAYLIQLKNLA--DVVLFDIVPNIPAGKALDIMHANVMA--GSN-CKVIG-TNS----------- 69 (322)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHHHCCCCCC--CCC-CEEEE-CCC-----------
T ss_conf 98299989698999999999638997--79999788980088999876636446--888-57983-799-----------
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCC------------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 999999726998999980367666740------------789999999864-----9849999504300
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTG------------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg------------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
.+.+.++|+|.||||.....|.- -++++.++++.. .+ .+-+||=|-.
T Consensus 70 ----y~~~~~aDiVVitAG~~~kpg~t~~~~~R~dLl~~Na~I~~~i~~~i~~~~p~a-iiivvsNPvD 133 (322)
T PTZ00082 70 ----YDDIAGSDVVIVTAGLAKAPGKSDDEWNRDDLLPLNAKIMIEVGENIKKYCPNA-FVIVITNPLD 133 (322)
T ss_pred ----HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHH
T ss_conf ----999779999998988877899987656788999988999999999987409983-5997489269
No 27
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.61 E-value=0.03 Score=35.98 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=65.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCC-CEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 861799996681479999999858998-449998255---7885518997048515542556788888389999999729
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQG-VNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~-~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
+.||.|||.|+-|..+...+...++-. +-++-+|.+ .++|+.+.+.. ..+.. + ..+ |+.
T Consensus 6 ~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~--~~~~~--~-i~~-gdy----------- 68 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP--FTSPT--K-IYA-GDY----------- 68 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC--CCCCC--E-EEE-CCH-----------
T ss_conf 984999997988999999998669988899980898710789998885412--36884--7-973-999-----------
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHCCC----EEEEEEECCCC
Q ss_conf 9999972699899998036766674-------078999999986498----49999504300
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNKGV----LTVGVVTKPFH 140 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~~~----~~~~~v~~pf~ 140 (502)
+.+.++|+|.||||..-..|- .-+.++.+++++... -.+-+||=|-.
T Consensus 69 ----~~~~daDvVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvD 126 (315)
T PRK00066 69 ----SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD 126 (315)
T ss_pred ----HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf ----9967999999899998999998789998789999998877642488539999369189
No 28
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.45 E-value=0.034 Score=35.50 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCEEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 861799996-681479999999858998449998255---7885518997048515542556788888389999999729
Q gi|254781176|r 14 KPRITVFGV-GGGGGNAVNNMVSSGLQGVNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 14 ~~~i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
..||.|||. |.-|..+-..|...++- -+++.++++ ..+++.+.++...... +..+
T Consensus 1 m~KV~IIGA~G~VG~s~A~~l~~~~~~-~elvL~Di~~a~g~a~Dl~~~~~~~~~~-----~~~~--------------- 59 (313)
T PTZ00325 1 MFKVAVLGAAGGIGQPLSLLLKRNPYV-STLSLYDIVGAPGVAADLSHIPSPAKVT-----GYAK--------------- 59 (313)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHCCCCCCCCC-----EECC---------------
T ss_conf 938999899986999999999838997-7799980897266898886755535665-----4527---------------
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHC-----CCEEEEEEECCC
Q ss_conf 9999972699899998036766674-------0789999999864-----984999950430
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNK-----GVLTVGVVTKPF 139 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~-----~~~~~~~v~~pf 139 (502)
....+.++++|+|+||||..-..|- .-++++..+++.. .+ .+-+||=|-
T Consensus 60 ~~~~e~~~~aDIVVitaG~~rkpg~tR~dLl~~N~~I~~~i~~~i~~~~~~a-iiivvtNPv 120 (313)
T PTZ00325 60 GELHKAVDGADVVLIVAGVPRKPGMTRDDLFNTNAGIVRDLVLACASSAPKA-IFGIITNPV 120 (313)
T ss_pred CCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCCH
T ss_conf 9888984899899988898899789689999970699999999999769980-999736824
No 29
>PRK05086 malate dehydrogenase; Provisional
Probab=96.27 E-value=0.046 Score=34.54 Aligned_cols=106 Identities=19% Similarity=0.370 Sum_probs=65.1
Q ss_pred CEEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEECC----CHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 61799996-68147999999985899844999825----57885518997048515542556788888389999999729
Q gi|254781176|r 15 PRITVFGV-GGGGGNAVNNMVSSGLQGVNFVVANT----DAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 15 ~~i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~nt----d~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
-||.|||. |.-|....-.|..++...-+++.++. ..++|+.+.++....+ ++ .+|.++.
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~-----~~-~~~~~~~---------- 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKI-----KG-FSGEDPT---------- 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCC-----CE-EECCCHH----------
T ss_conf 9899998998699999999982898777499975888861056565478754665-----34-6169867----------
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHCC----CEEEEEEECCCC
Q ss_conf 9999972699899998036766674-------07899999998649----849999504300
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNKG----VLTVGVVTKPFH 140 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~~----~~~~~~v~~pf~ 140 (502)
+.|+|+|+|+||||..-..|- .-++++.++++..- --.+.|||=|-+
T Consensus 65 ----~~l~~adiVvitAG~~rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvsNPvD 122 (312)
T PRK05086 65 ----PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVN 122 (312)
T ss_pred ----HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf ----8717999999878989985898899999878999999998872089718999548327
No 30
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.21 E-value=0.056 Score=33.95 Aligned_cols=106 Identities=22% Similarity=0.306 Sum_probs=65.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCC-CEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 861799996681479999999858998-449998255---7885518997048515542556788888389999999729
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQG-VNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~-~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
++||.|||.|.-|..+...|...++.. +-++=+|.| .++|+.+.+... .+. ++=. .++|.
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~--~~~--~~v~-~~~d~----------- 66 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF--LKN--PKIE-ADKDY----------- 66 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCC--CEEE-ECCCH-----------
T ss_conf 8869998978889999999996699887999938898332688886604012--798--5599-37999-----------
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 9999972699899998036766674-------0789999999864-----9849999504300
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
+.+.|+|+|+||||.--..|. .-++++.++++.. .. .+-+||-|-.
T Consensus 67 ----~~~~~aDvVVitAG~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~-ivivvsNPvD 124 (312)
T cd05293 67 ----SVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA-ILLVVSNPVD 124 (312)
T ss_pred ----HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHH
T ss_conf ----996899999988999999898889999988999999999988419984-6996689189
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.88 E-value=0.064 Score=33.53 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=60.9
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECC-----CHHHHHHCCC------CEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 79999668147999999985899844999825-----5788551899------704851554255678888838999999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT-----DAQALMMSKA------KQIIQLGSGITEGLGAGSHPEVGRAAA 85 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt-----d~~~l~~~~~------~~~~~~g~~~~~g~g~g~~~~~g~~~a 85 (502)
|.|||.|.-|..+...+...++. +++.++. ..++|+.+.+ +.|+.- ++|.+
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~--el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~----------~~d~~------ 62 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG----------TNDYE------ 62 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE----------CCCHH------
T ss_conf 98989688899999999857996--7999809998005798877613201589858994----------78879------
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHC---C-CEEEEEEECCCC
Q ss_conf 97299999972699899998036766674-------0789999999864---9-849999504300
Q gi|254781176|r 86 EECIDEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNK---G-VLTVGVVTKPFH 140 (502)
Q Consensus 86 ~~~~~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~---~-~~~~~~v~~pf~ 140 (502)
.++|+|+|+||||.....|. .-++++.++++.+ + --.+-+||=|-+
T Consensus 63 ---------~~~daDvvVitaG~~~k~g~tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvsNPvD 119 (300)
T cd01339 63 ---------DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD 119 (300)
T ss_pred ---------HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf ---------947998999906778998998899999889999999999996599848998279389
No 32
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.88 E-value=0.11 Score=31.79 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=65.1
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCC-CEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1799996681479999999858998-449998255---788551899704851554255678888838999999972999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQG-VNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~-~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
||.|||.|+-|..+-..+...++-. +-++-+|.+ .++|+.+.+... .+.. -..+ ++.
T Consensus 2 KI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~--~~~~---~i~~-~~~------------- 62 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF--VKPV---RIYA-GDY------------- 62 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC--CCCC---EEEE-CCH-------------
T ss_conf 79999948889999999986799887999918898451256876624103--6881---6840-999-------------
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 999726998999980367666740-------789999999864-----9849999504300
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
+.|+++|+|+||||.--..|-- -+.++.++++.+ +.+ +-+||=|-.
T Consensus 63 --~~l~daDvVVitaG~~rk~g~tR~dll~~Na~I~~~i~~~i~~~~p~~i-vivvsNPvD 120 (308)
T cd05292 63 --ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAI-LLVVTNPVD 120 (308)
T ss_pred --HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEECCCCHH
T ss_conf --9977999999899999998998789998889999999999984199808-997279547
No 33
>PRK13937 phosphoheptose isomerase; Provisional
Probab=95.84 E-value=0.14 Score=30.99 Aligned_cols=118 Identities=18% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCEEEEEEECCCHHHHHH---HHH---HCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 861799996681479999---999---85899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVN---NMV---SSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~---~~~---~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|-||..+++-- .|. ...-.+..-+++++|...|....-+ .| . ..=
T Consensus 42 g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND----~g----------------~--~~i 99 (192)
T PRK13937 42 GGKLLLCGNGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGND----YG----------------Y--ERV 99 (192)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCC----CC----------------H--HHH
T ss_conf 9989999686318889999999964135578985357767882877764277----87----------------8--999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++...+.-|++|...+=|. +-.-.--++.||++|+.||+++. +.|. +|++.+|-.|.+
T Consensus 100 f~~ql~~~~~~gDili~iS~SGn---S~Nii~A~~~A~~~g~~~i~ltG----~~gg-----------~l~~~~D~~i~v 161 (192)
T PRK13937 100 FARQVEALGRPGDVLIGISTSGN---SPNVLAALEKARELGMTTIGLTG----RDGG-----------KMKELCDLLLIV 161 (192)
T ss_pred HHHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEEC----CCCH-----------HHHHHCCEEEEE
T ss_conf 99999955788988999779999---97999999999987997999988----8960-----------578839989995
Q ss_pred HHHH
Q ss_conf 2788
Q gi|254781176|r 168 PNQN 171 (502)
Q Consensus 168 ~n~~ 171 (502)
|-+.
T Consensus 162 ps~~ 165 (192)
T PRK13937 162 PSDD 165 (192)
T ss_pred CCCC
T ss_conf 8998
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.83 E-value=0.095 Score=32.26 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=48.1
Q ss_pred EEEEEE-CCCHHHHHHHHHHCCCCC-CEEEEECC--C---HHHHHHCCCC-----EEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 799996-681479999999858998-44999825--5---7885518997-----0485155425567888883899999
Q gi|254781176|r 17 ITVFGV-GGGGGNAVNNMVSSGLQG-VNFVVANT--D---AQALMMSKAK-----QIIQLGSGITEGLGAGSHPEVGRAA 84 (502)
Q Consensus 17 i~v~g~-gg~g~n~~~~~~~~~~~~-~~~~~~nt--d---~~~l~~~~~~-----~~~~~g~~~~~g~g~g~~~~~g~~~ 84 (502)
|.|||. |.-|..+...|...+... -+++.++. + .++++.+.+. .++.++
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~------------------- 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSIT------------------- 61 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEC-------------------
T ss_conf 9898779779999999998289999988999958987208799999854523578739974-------------------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 99729999997269989999803676667
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGGTG 113 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~gggtg 113 (502)
....+.++|+|+|+||||.+...|
T Consensus 62 -----~~~~~~~~daDvVVitag~~~k~g 85 (263)
T cd00650 62 -----DDPYEAFKDADVVIITAGVGRKPG 85 (263)
T ss_pred -----CCHHHHHCCCCEEEEECCCCCCCC
T ss_conf -----873898379989999057788999
No 35
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.78 E-value=0.081 Score=32.77 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=63.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCC-CEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998-449998255---78855189970485155425567888883899999997299
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQG-VNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~-~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
.||.|||.|.-|..+...+...++.+ +-++-+|.+ .++|+.+.+.... +.. ++- . .++.
T Consensus 1 rKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~--~~~-~~i-~-~~~~------------ 63 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL--PSP-VKI-K-AGDY------------ 63 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCC-EEE-E-ECCH------------
T ss_conf 9599999698899999999857998779998189870176999887013305--997-399-6-0887------------
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 9999726998999980367666740-------789999999864-----9849999504300
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
+.|+++|+|+||||.--..|.- -+.++..+++++ .++ +-+||=|-.
T Consensus 64 ---~~~~~aDvvVitAG~~rk~g~~R~dLl~~N~~I~k~i~~~i~~~~p~ai-vivvtNPvD 121 (306)
T cd05291 64 ---SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGI-FLVASNPVD 121 (306)
T ss_pred ---HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCHH
T ss_conf ---8847899999906766799998789999789999999999872299718-999358167
No 36
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.78 E-value=0.19 Score=30.04 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=64.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC-----CHHHHHHCCC------CEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 179999668147999999985899844999825-----5788551899------70485155425567888883899999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT-----DAQALMMSKA------KQIIQLGSGITEGLGAGSHPEVGRAA 84 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt-----d~~~l~~~~~------~~~~~~g~~~~~g~g~g~~~~~g~~~ 84 (502)
||.|||.|.-|..+...+...++. -|++.++. ..++|+.+.+ +.++..+ +|
T Consensus 2 KI~IiGaG~VG~~~a~~l~~~~l~-~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~----------~d------- 63 (312)
T PRK06223 2 KISIIGAGNVGATLAHLLALKELG-KDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGT----------ND------- 63 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEC----------CC-------
T ss_conf 799999698999999999857998-748997699973367988876514336888479837----------88-------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCC---C----CHHHHHHHHHHHCCC----EEEEEEECCCC
Q ss_conf 99729999997269989999803676667---4----078999999986498----49999504300
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGGTG---T----GAAPIIAKIARNKGV----LTVGVVTKPFH 140 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~gggtg---t----g~~p~ia~~a~~~~~----~~~~~v~~pf~ 140 (502)
.+.+.++|+|+||||..-..| . .-++++.++++++.. -.+-+||=|-+
T Consensus 64 --------~~~~~daDiVVitag~~rk~g~tR~dll~~N~~I~k~i~~~i~~~~p~~iilvvsNPvD 122 (312)
T PRK06223 64 --------YADIAGSDVVIITAGVPRKPGMSRDDLLGINAKIMKDVGEGIKKYAPDAIVIVITNPVD 122 (312)
T ss_pred --------HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf --------89957999999906778999988689999878999999999984099818999369368
No 37
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.61 E-value=0.06 Score=33.73 Aligned_cols=106 Identities=21% Similarity=0.298 Sum_probs=62.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255---788551899704851554255678888838999999972999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
-||.|||.|.-|..+-..+...++..+-++-+|.+ .++|+.+.+... .+... +=.|+ +|
T Consensus 2 ~KV~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~--~~~~~-~i~~~-~d-------------- 63 (313)
T PTZ00117 2 KKISIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTI--IGVNA-NILGT-NN-------------- 63 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC--CCCCC-EEEEC-CC--------------
T ss_conf 78999897989999999997089987999958898308899887724203--68985-79837-99--------------
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 999726998999980367666740-------789999999864-----9849999504300
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
.+.+.|+|+|.||||..-..|.- -+.++.+++++. ++ .+-+||=|-.
T Consensus 64 -y~~~~daDiVVitAG~~rk~g~tR~dLl~~N~~I~~~i~~~i~~~~p~a-iiivvtNPvD 122 (313)
T PTZ00117 64 -YEDIKDSDVIVITAGVQRKEGMTREDLIGVNGKIMKSVAESVKKHCPNA-FVICVSNPLD 122 (313)
T ss_pred -HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCHH
T ss_conf -9996899999989899899799889999876777888887762358980-8997899489
No 38
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=95.57 E-value=0.087 Score=32.53 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=48.7
Q ss_pred EEEEEEECC-CHHHHHHHHHHCCCCCCEEEEECCC-----HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 179999668-1479999999858998449998255-----7885518997048515542556788888389999999729
Q gi|254781176|r 16 RITVFGVGG-GGGNAVNNMVSSGLQGVNFVVANTD-----AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 16 ~i~v~g~gg-~g~n~~~~~~~~~~~~~~~~~~ntd-----~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
||.|||.|| -|..+...+...++- -|++.++.+ .++|+.+.+.... ...... + .++
T Consensus 2 KV~IIGagg~VG~~~A~~l~~~~l~-~elvL~D~~~~~a~g~alDl~~~~~~~--~~~~~~--~-~~~------------ 63 (142)
T pfam00056 2 KVAVVGAGGGVGSSLAFALALQGLA-DELVLVDINKDKAEGVAMDLSHGSTFL--SVPGIV--G-GDD------------ 63 (142)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCHHHHHHHHCCCCCC--CCCEEE--C-CCC------------
T ss_conf 8999898778999999999747966-347885057764117999986144347--887697--4-883------------
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 999997269989999803676667
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTG 113 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtg 113 (502)
.+.+.|+|+|+||||.--..|
T Consensus 64 ---~~~~~daDiVVitaG~~~k~g 84 (142)
T pfam00056 64 ---YEALKDADVVVITAGVPRKPG 84 (142)
T ss_pred ---HHHHCCCCEEEEECCCCCCCC
T ss_conf ---888378999998157778999
No 39
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=95.54 E-value=0.23 Score=29.37 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCEEEEEEECCCHHHHH---HHHHHC---CCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86179999668147999---999985---899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAV---NNMVSS---GLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~---~~~~~~---~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|-||.+..+- ..|... .-.+...++++.|...+.....+..- ..-
T Consensus 33 g~kI~~~GNGgSa~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~----------------------~~i 90 (177)
T cd05006 33 GGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGY----------------------EEV 90 (177)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCH----------------------HHH
T ss_conf 9989999687408889999998735766688870179767877888887565329----------------------999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
..++++...+--|++++..+=|. |---.-.++.||++|+.||++... .|.+ |.+.+|..|.+
T Consensus 91 f~~ql~~~~~~gDili~iS~sG~---s~nii~a~~~ak~~g~~~i~ltg~----~gg~-----------l~~~~D~~i~v 152 (177)
T cd05006 91 FSRQVEALGQPGDVLIGISTSGN---SPNVLKALEAAKERGMKTIALTGR----DGGK-----------LLELADIEIHV 152 (177)
T ss_pred HHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEECC----CCCH-----------HHHHCCEEEEE
T ss_conf 99999974468988999818999---989999999999879989999878----9861-----------67619989996
Q ss_pred HHHH
Q ss_conf 2788
Q gi|254781176|r 168 PNQN 171 (502)
Q Consensus 168 ~n~~ 171 (502)
|-+.
T Consensus 153 ps~~ 156 (177)
T cd05006 153 PSDD 156 (177)
T ss_pred CCCC
T ss_conf 9998
No 40
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.44 E-value=0.12 Score=31.42 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=61.1
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCC-CCEEEEEC---CCHHHHHHCCCCE-----EEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 179999668147999999985899-84499982---5578855189970-----48515542556788888389999999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQ-GVNFVVAN---TDAQALMMSKAKQ-----IIQLGSGITEGLGAGSHPEVGRAAAE 86 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~-~~~~~~~n---td~~~l~~~~~~~-----~~~~g~~~~~g~g~g~~~~~g~~~a~ 86 (502)
||.|||.|.-|..+...+...++. .+-++=+| +..++|+.+.+.. .+.++. ++
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~---------~~--------- 62 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA---------GD--------- 62 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECC---------CC---------
T ss_conf 989999698999999999856998879999288982379999876120358998658667---------99---------
Q ss_pred HHHHHHHHHHCCCCEEEEEECCC---CCCCC------CHHHHHHHHHHHCC----CEEEEEEECCCC
Q ss_conf 72999999726998999980367---66674------07899999998649----849999504300
Q gi|254781176|r 87 ECIDEITEMLDKTHMCFVTAGMG---GGTGT------GAAPIIAKIARNKG----VLTVGVVTKPFH 140 (502)
Q Consensus 87 ~~~~~i~~~~~~~~~~~~~ag~g---ggtgt------g~~p~ia~~a~~~~----~~~~~~v~~pf~ 140 (502)
.+.+.|+|+|.||||.- |-|.+ .-+.++.++++.+- =-.+-+||-|-.
T Consensus 63 ------y~~~~~aDiVVitaG~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD 123 (307)
T cd05290 63 ------YDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD 123 (307)
T ss_pred ------HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf ------8994699999986777658999835888888578999999999861399749998479388
No 41
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.34 E-value=0.09 Score=32.42 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=57.7
Q ss_pred EEEEEEE-CCCHHHHHHHHHHCCCCC----CEEEEECCC-------HHHHHHCC--CC--EEEEECCCCCCCCCCCCCHH
Q ss_conf 1799996-681479999999858998----449998255-------78855189--97--04851554255678888838
Q gi|254781176|r 16 RITVFGV-GGGGGNAVNNMVSSGLQG----VNFVVANTD-------AQALMMSK--AK--QIIQLGSGITEGLGAGSHPE 79 (502)
Q Consensus 16 ~i~v~g~-gg~g~n~~~~~~~~~~~~----~~~~~~ntd-------~~~l~~~~--~~--~~~~~g~~~~~g~g~g~~~~ 79 (502)
||.|+|- |+-|.+..-.+....+.| +.+..++.. ..+++... .+ ..+.++ .
T Consensus 2 KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~----------~--- 68 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT----------T--- 68 (323)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEC----------C---
T ss_conf 899989997899999999972863699860089997588865553148786653466555874842----------8---
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 999999972999999726998999980367666740-------789999999864-----9849999504300
Q gi|254781176|r 80 VGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 80 ~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
...+.++|+|+|+||||+--.-|-- -+.++.+++... .-..|-|||-|-+
T Consensus 69 -----------~~~~~~~~aDvViitaG~prkpG~tR~DLl~~N~~I~k~~~~~i~~~a~p~~~vivvsNPvD 130 (323)
T cd00704 69 -----------DPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred -----------CHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf -----------85898379988998278788999827999987489999999999851799838999578646
No 42
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.27 E-value=0.23 Score=29.45 Aligned_cols=102 Identities=25% Similarity=0.421 Sum_probs=64.2
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEEC--C---CHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7999966814799999998589984499982--5---5788551899704851554255678888838999999972999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVAN--T---DAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n--t---d~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
|.|||.|.-|..+...+...++.. |++.++ . ..++++.+.+.....- ... .+ +++
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~-el~L~Di~~~~a~g~a~Dl~~~~~~~~~-~~~---~~-~~~-------------- 60 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLAS-ELVLVDVNEEKAKGDALDLSHASAFLAT-GTI---VR-GGD-------------- 60 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHHHCCCCCCC-CEE---EC-CCC--------------
T ss_conf 989896889999999998679988-7999818998115688887725634688-539---82-798--------------
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCC
Q ss_conf 999726998999980367666740-------789999999864-----9849999504300
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFH 140 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~ 140 (502)
.+.+.|+|+|+||||..-..|.- -++++.++++.+ .. .+-+||-|-.
T Consensus 61 -~~~~~daDvvVitaG~~rkpg~tR~dll~~Na~I~k~i~~~i~~~~p~~-ivivvtNPvD 119 (300)
T cd00300 61 -YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDA-IILVVSNPVD 119 (300)
T ss_pred -HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHH
T ss_conf -8996799999987898999799889999988899999999998419971-8998579669
No 43
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.17 E-value=0.081 Score=32.77 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=58.9
Q ss_pred EEEEEE-ECCCHHHHHHHHHHCCCCCCEEEEECCCH---HHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 179999-66814799999998589984499982557---8855189--97048515542556788888389999999729
Q gi|254781176|r 16 RITVFG-VGGGGGNAVNNMVSSGLQGVNFVVANTDA---QALMMSK--AKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 16 ~i~v~g-~gg~g~n~~~~~~~~~~~~~~~~~~ntd~---~~l~~~~--~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
||.||| .|.-|..+--.|...++- -|++.++.+. ++|+.+. ...++. |.- + .
T Consensus 2 KV~IIGA~G~VG~~~A~~l~~~~~~-~elvLiDi~~~~g~a~DL~h~~~~~~v~-------~~~--~------------~ 59 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLV-SELALYDIVNTPGVAADLSHINTPAKVT-------GYL--G------------P 59 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHCCCCCCCEE-------EEE--C------------C
T ss_conf 8999999981899999999729997-7699982774266755321656568512-------570--8------------8
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHC---C-CEEEEEEECCC
Q ss_conf 9999972699899998036766674-------0789999999864---9-84999950430
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNK---G-VLTVGVVTKPF 139 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~---~-~~~~~~v~~pf 139 (502)
+.+.+.|+|+|+|+||||..-..|- .-+.++.++++.. + =-.+-+||=|-
T Consensus 60 ~~~~~~l~daDiVVitAG~~rkpG~tR~dLl~~N~~I~k~i~~~i~~~~p~aiiivvtNPv 120 (310)
T cd01337 60 EELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred CCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf 7466774799999987898899798989998740788999999998209984999970834
No 44
>PRK08223 hypothetical protein; Validated
Probab=95.08 E-value=0.32 Score=28.38 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=70.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHH---HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH----
Q ss_conf 86179999668147999999985899844999825578855---18997048515542556788888389999999----
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALM---MSKAKQIIQLGSGITEGLGAGSHPEVGRAAAE---- 86 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~---~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~---- 86 (502)
+-|+.|+|+||-||-++-+|-..|+- .+..++-|.-.|+ +.-....=.||+. +.++.++...
T Consensus 27 ~s~VlVvG~GGlGs~~a~~LAraGVG--~i~lvD~D~velSNLnRQi~~~~~diG~~---------Kveva~e~l~~INP 95 (287)
T PRK08223 27 NSRVAIAGLGGVGGVHLLTLARLGIG--KFNIADFDVFELVNSNRQYGAMMSSNGRP---------KVEVMREIALDINP 95 (287)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCHHHCCCHHHCCCC---------HHHHHHHHHHHHCC
T ss_conf 59689993675579999999982897--59997499846344022234474344985---------89999999998698
Q ss_pred ----------HHHHHHHHHHCCCCEEEEEECCCCCCCC---CHHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf ----------7299999972699899998036766674---078999999986498499995043000406
Q gi|254781176|r 87 ----------ECIDEITEMLDKTHMCFVTAGMGGGTGT---GAAPIIAKIARNKGVLTVGVVTKPFHFEGS 144 (502)
Q Consensus 87 ----------~~~~~i~~~~~~~~~~~~~ag~gggtgt---g~~p~ia~~a~~~~~~~~~~v~~pf~~eg~ 144 (502)
-+.+-+.+.|++.|+|+= ||-. -.--.+.+.|..+|+-.|.- -|+.|||.
T Consensus 96 ~v~V~~~~~~lt~~N~~~~l~~~DvVvD------g~DnF~~~tR~ll~~ac~~~giP~v~~--a~l~f~gq 158 (287)
T PRK08223 96 ELEIRAFPEGIGKENLDTFLDGVDVYVD------GLDFFVFDIRRLLFREAQARGIPALTA--APLGFSTA 158 (287)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEE------CCCCCCHHHHHHHHHHHHHHCCCEEEE--CCCCCCCE
T ss_conf 9879995878998999999867999997------966788318999999999859984983--15410306
No 45
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.05 E-value=0.19 Score=30.08 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=61.5
Q ss_pred CEEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEE--CCC-----HHHHHHCCC------CEEEEECCCCCCCCCCCCCHHH
Q ss_conf 61799996-681479999999858998449998--255-----788551899------7048515542556788888389
Q gi|254781176|r 15 PRITVFGV-GGGGGNAVNNMVSSGLQGVNFVVA--NTD-----AQALMMSKA------KQIIQLGSGITEGLGAGSHPEV 80 (502)
Q Consensus 15 ~~i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~--ntd-----~~~l~~~~~------~~~~~~g~~~~~g~g~g~~~~~ 80 (502)
-||.|||. |.-|..+...+...++- -+++.+ +.+ .++|+.+.+ ..+|.. ++|
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~-~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~----------~~d--- 66 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI----------SSD--- 66 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEE----------CCC---
T ss_conf 98999999976999999999837998-7599960556434231123554503433688767982----------798---
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CHHHHHHHHHHHCCC----EEEEEEECCCC
Q ss_conf 9999997299999972699899998036766674-------078999999986498----49999504300
Q gi|254781176|r 81 GRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGT-------GAAPIIAKIARNKGV----LTVGVVTKPFH 140 (502)
Q Consensus 81 g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgt-------g~~p~ia~~a~~~~~----~~~~~v~~pf~ 140 (502)
.+.|+|+|+|+||||+.-..|. .-+.++..+++.... -.+.+||=|-.
T Consensus 67 ------------~~~~~daDivVitAG~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~~ivivvtNPvD 125 (309)
T cd05294 67 ------------LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD 125 (309)
T ss_pred ------------HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf ------------89968999999878988995998789999899999999987642699849997689657
No 46
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.04 E-value=0.077 Score=32.90 Aligned_cols=237 Identities=19% Similarity=0.241 Sum_probs=109.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCC-CCEEEEEC---CCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6179999668147999999985899-84499982---5578855189970485155425567888883899999997299
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQ-GVNFVVAN---TDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~-~~~~~~~n---td~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
.||.|+|-|+-|....-.|...++. .+-++-++ +-..+|+.+.+..-......++. . + +
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~---~-~-------------~ 63 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG---D-G-------------D 63 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEEC---C-C-------------C
T ss_conf 939998987478999999962555665999974666564011025334000267618834---7-8-------------7
Q ss_pred HHHHHHCCCCEEEEEECCCCCCC-C------CHHHHHHHHHHHCC----CEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99997269989999803676667-4------07899999998649----8499995043000406788889999999998
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTG-T------GAAPIIAKIARNKG----VLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtg-t------g~~p~ia~~a~~~~----~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~ 159 (502)
.+.++|+|+|+||||.--+-| | .-+.++..++++.. =--+-|||=|-+.=-..- .+
T Consensus 64 --y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~-----------~k 130 (313)
T COG0039 64 --YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA-----------MK 130 (313)
T ss_pred --HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-----------HH
T ss_conf --02316998999968888998997799998659999999999996599729999459478899999-----------99
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHCCCCEEEEE---EEECC
Q ss_conf 63335450278887413665318999744679999998888876516655558987878-764158658998---76148
Q gi|254781176|r 160 TVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVR-SVMRNMGRAMMG---TGEAS 235 (502)
Q Consensus 160 ~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~-~v~~~~g~a~~g---~g~~~ 235 (502)
++. +|-+|. .+--+.+ +.-++ -.-|++ ..|++..|+. -|+.+.|.+++- ...-.
T Consensus 131 ~sg----~p~~rv---ig~gt~L-Ds~R~--------~~~lae------~~~v~~~~v~~~ViGeHGdt~vp~~S~a~v~ 188 (313)
T COG0039 131 FSG----FPKNRV---IGSGTVL-DSARF--------RTFLAE------KLGVSPKDVHAYVIGEHGDTMVPLWSQATVG 188 (313)
T ss_pred HCC----CCCCCE---ECCCCHH-HHHHH--------HHHHHH------HHCCCHHHCEEEEECCCCCCEEEEEEEEEEC
T ss_conf 639----984446---5354468-89999--------999999------8598966721568316788367741331588
Q ss_pred CCCHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCC
Q ss_conf 62048999988---7527010002245553789996168888999999999999974168863-999853134657
Q gi|254781176|r 236 GHGRGIQAAEA---AVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEAN-IILGATFDEALE 307 (502)
Q Consensus 236 g~~r~~~a~~~---a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~-ii~G~~~d~~~~ 307 (502)
|- ...+-+.. -.-..|.+ .++.+-.-+|.--|+. -++.=...+++..+.-+.+.-. +-.++..|.+.+
T Consensus 189 G~-pl~~~~~~~~~~~~~~i~~--~v~~~g~eII~~kG~~-t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~G~yg 260 (313)
T COG0039 189 GK-PLEELLKEDTEEDLEELIE--RVRNAGAEIIEAKGAG-TYYGPAAALARMVEAILRDEKRVLPVSVYLDGEYG 260 (313)
T ss_pred CE-EHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 78-8899760030768999999--9986289999741760-05669999999999997477856878775357667
No 47
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.98 E-value=0.095 Score=32.26 Aligned_cols=231 Identities=16% Similarity=0.212 Sum_probs=106.0
Q ss_pred EEEEEEE-CCCHHHHHHHHHHCCCCC----CEEEEECCCH-----H--HHHHCC----CCEEEEECCCCCCCCCCCCCHH
Q ss_conf 1799996-681479999999858998----4499982557-----8--855189----9704851554255678888838
Q gi|254781176|r 16 RITVFGV-GGGGGNAVNNMVSSGLQG----VNFVVANTDA-----Q--ALMMSK----AKQIIQLGSGITEGLGAGSHPE 79 (502)
Q Consensus 16 ~i~v~g~-gg~g~n~~~~~~~~~~~~----~~~~~~ntd~-----~--~l~~~~----~~~~~~~g~~~~~g~g~g~~~~ 79 (502)
||.|+|- |+-|.+..-++....+.| +++..++.+. + +++.+. ...++.+ +.++
T Consensus 4 KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~----------~~~~- 72 (322)
T cd01338 4 RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----------TDDP- 72 (322)
T ss_pred EEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEE----------ECCH-
T ss_conf 99998999689999999997111307997269999757575666765774453267654587797----------4887-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH-------HHHHHHHHHHC-----CCEEEEEEECCCCCCCHHHH
Q ss_conf 9999999729999997269989999803676667407-------89999999864-----98499995043000406788
Q gi|254781176|r 80 VGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGA-------APIIAKIARNK-----GVLTVGVVTKPFHFEGSRRM 147 (502)
Q Consensus 80 ~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~-------~p~ia~~a~~~-----~~~~~~~v~~pf~~eg~~r~ 147 (502)
.+.++|+|+|+||||.--.-|--- +.++..+++.. .-..|-|||-|-+.=-..
T Consensus 73 -------------~~a~~~aDvVvitaG~prkPG~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvsNPvd~~~~v-- 137 (322)
T cd01338 73 -------------NVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI-- 137 (322)
T ss_pred -------------HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH--
T ss_conf -------------89837887899936878998981899999868999999999997579883899957818889999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HH-CCCC
Q ss_conf 889999999998633354502788874136653189997446799999988888765166555589878787-64-1586
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRS-VM-RNMG 225 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~-v~-~~~g 225 (502)
| + +++ =-+|.+|+.-. +.+ +.-+. -.-|++ ..+++-.+|+. ++ .+-|
T Consensus 138 --~------~-k~~---~~~~~~~i~~~----t~L-Ds~R~--------r~~la~------~l~v~~~~V~~~vv~G~HG 186 (322)
T cd01338 138 --A------M-KNA---PDIPPDNFTAM----TRL-DHNRA--------KSQLAK------KAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred --H------H-HHC---CCCCHHHEEEE----EHH-HHHHH--------HHHHHH------HHCCCHHHCEEEEEEECCC
T ss_conf --9------9-976---89974609996----349-99999--------999999------8497967754558970588
Q ss_pred EEEEE---EEECCCCCHHHHHHH--HHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCCEE
Q ss_conf 58998---761486204899998--8752701000224555378999616888899999999999997416---886399
Q gi|254781176|r 226 RAMMG---TGEASGHGRGIQAAE--AAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVD---SEANII 297 (502)
Q Consensus 226 ~a~~g---~g~~~g~~r~~~a~~--~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~---~~a~ii 297 (502)
.+++- ...-.|. ...+.+. +.+..-|++. ++.+..-++.-.|... ...-...+.+.++.-+. ++-.+-
T Consensus 187 ds~vp~~s~a~V~G~-pl~~~~~d~~~~~~e~~~~--v~~~g~eIi~~kg~~s-~~~~a~a~~~~~~~~~~~~~~~~i~~ 262 (322)
T cd01338 187 PTQYPDFTNATIGGK-PAAEVINDRAWLEDEFIPT--VQKRGAAIIKARGASS-AASAANAAIDHMRDWVLGTPEGDWFS 262 (322)
T ss_pred CCEEECCCCCEECCE-EHHHHHCCHHHHHHHHHHH--HHCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 827742125659889-9899523255667778999--9646999986546636-99999999999999960877885589
Q ss_pred EEEEECCCCC
Q ss_conf 9853134657
Q gi|254781176|r 298 LGATFDEALE 307 (502)
Q Consensus 298 ~G~~~d~~~~ 307 (502)
.++..|-.++
T Consensus 263 ~~v~~~G~YG 272 (322)
T cd01338 263 MAVPSDGSYG 272 (322)
T ss_pred EEEEECCCCC
T ss_conf 9998356668
No 48
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=94.96 E-value=0.25 Score=29.17 Aligned_cols=107 Identities=18% Similarity=0.322 Sum_probs=61.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-------
Q ss_conf 6179999668147999999985899844999825578855189970485155425567888883899999997-------
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE------- 87 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~------- 87 (502)
-||.|+|+||-||.++..+...|+. .+..++-|. +..+.....++....- .|. .+.+..++...+
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg--~i~lvD~D~--ve~sNL~Rq~l~~~~d---iG~-~Ka~~~~~~l~~~np~~~i 73 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVG--KLTLVDFDT--VELSNLNRQILFTESD---IGK-PKAEVAKERLRAINPDVEV 73 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCC--CCCCCCCCEEECCHHH---CCC-EEHHHHHHHHHHHCCCCEE
T ss_conf 8899989888999999999993897--499998956--7632227224233646---688-1079999999977899589
Q ss_pred -------HHHHHHHHHCCCCEEEEEECCCCCCCCCHH-HHHHHHHHHCCCEEEEEE
Q ss_conf -------299999972699899998036766674078-999999986498499995
Q gi|254781176|r 88 -------CIDEITEMLDKTHMCFVTAGMGGGTGTGAA-PIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 88 -------~~~~i~~~~~~~~~~~~~ag~gggtgtg~~-p~ia~~a~~~~~~~~~~v 135 (502)
+.+.+.+.+++.|+||.+ +.+-.+ -.+.++|++.++..|..-
T Consensus 74 ~~~~~~i~~~~~~~~~~~~DvVi~~------~Dn~~~r~~ln~~c~~~~ip~i~~~ 123 (134)
T pfam00899 74 EAYPERLTPENLEELLKGADLVVDA------LDNFAARYLLNDACVKRGIPLISAG 123 (134)
T ss_pred EEEECCCCHHHHHHCCCCCCEEEEC------CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9992567977876426448899999------8999999999999998599899955
No 49
>KOG2013 consensus
Probab=94.93 E-value=0.097 Score=32.19 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=44.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHCCCCEEEEECCC
Q ss_conf 86179999668147999999985899844999825-5788551899704851554
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT-DAQALMMSKAKQIIQLGSG 67 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt-d~~~l~~~~~~~~~~~g~~ 67 (502)
.-||.|||.||-||-.+..+...|+..+..|-.+| |..+|++.=--.|=++|+.
T Consensus 12 ~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqs 66 (603)
T KOG2013 12 SGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQS 66 (603)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCEECCCHHHHHEEEHHHCCCH
T ss_conf 6718999057321999999998267705797325320210124550204122761
No 50
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=94.54 E-value=0.43 Score=27.42 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=66.3
Q ss_pred EEEEEE-CCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 799996-681479999999858998449998255788551-899704851554255678888838999999972999999
Q gi|254781176|r 17 ITVFGV-GGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM-SKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 17 i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~-~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
|.|+|- |.-|..++..|.+.|.+ |..++=|.+...+.. ......+..|. ..+.+.+.+
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~-Vr~l~R~~~~~~~~~l~~~gve~v~gD-------------------~~d~~sl~~ 60 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHP-VRALVRDPKSELAKSLKAAGVELVEGD-------------------LDDHESLVE 60 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHCCCEEEEEC-------------------CCCHHHHHH
T ss_conf 099896828999999999858993-899971873665666641798899906-------------------888789999
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 72699899998036766674078999999986498499995043
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
+|+|.|.||.+++.....---...-+.+.|++.|+--+.+.+++
T Consensus 61 al~gvd~v~~~~~~~~~~~~~~~~~~~~AA~~aGVk~~V~ss~~ 104 (232)
T pfam05368 61 ALKGVDVVFSVTGFWLSKEIEDGKKLADAAKEAGVKHFIPSEFG 104 (232)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 96799889991588741779999999999997399834555501
No 51
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.44 Score=27.34 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=24.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 86179999668147999999985899844999825
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT 48 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt 48 (502)
--||.|+|.|+.|-.++..+...|. +.++.+.
T Consensus 6 ~k~v~V~GlG~sG~s~~~~L~~~G~---~v~~~D~ 37 (438)
T PRK03806 6 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDT 37 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 9989999457888999999997899---6999989
No 52
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.94 E-value=0.56 Score=26.56 Aligned_cols=104 Identities=16% Similarity=0.344 Sum_probs=62.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729------
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI------ 89 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~------ 89 (502)
||.|+|+||-|+.+...+.+.|+. ++..++-|. +..+.....++.- ..++|+.-|+-..
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~--~i~ivD~D~--v~~~Nl~Rq~~~~-----------~~dvG~~Ka~~a~~~l~~~ 65 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDT--VELSNLNRQFLAR-----------QADIGKPKAEVAARRLNEL 65 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCC--CCCCCCCCCCCCC-----------HHHHCCHHHHHHHHHHHHH
T ss_conf 999999798999999999993797--199997898--7500146422589-----------8894922489999999856
Q ss_pred ---------------HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf ---------------99999726998999980367666740789999999864984999950430
Q gi|254781176|r 90 ---------------DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 90 ---------------~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
+...+.+++.|+||.+.. ..-+--.+.++|++.++..|..-+..|
T Consensus 66 np~v~i~~~~~~~~~~~~~~~~~~~dvvi~~~D-----~~~~r~~l~~~~~~~~ip~i~~~~~g~ 125 (143)
T cd01483 66 NPGVNVTAVPEGISEDNLDDFLDGVDLVIDAID-----NIAVRRALNRACKELGIPVIDAGGLGL 125 (143)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 898389999456896469999759999998779-----999999999999986998899636676
No 53
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=93.85 E-value=0.28 Score=28.81 Aligned_cols=89 Identities=16% Similarity=0.345 Sum_probs=60.7
Q ss_pred EEEECCCHHHHHHHHHHCCCCCCEEEEECCCH-----HHHHH------CCCC-EEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99966814799999998589984499982557-----88551------8997-048515542556788888389999999
Q gi|254781176|r 19 VFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA-----QALMM------SKAK-QIIQLGSGITEGLGAGSHPEVGRAAAE 86 (502)
Q Consensus 19 v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~-----~~l~~------~~~~-~~~~~g~~~~~g~g~g~~~~~g~~~a~ 86 (502)
|||.|.-|..+.--|+.+|+- -|++.++-+. .+++. ++-+ .+|.-|. .
T Consensus 1 iiG~G~VGss~A~a~~~~g~a-~E~vliDin~~ka~Gea~DL~ha~~f~~~~~~~v~~gd-----------Y-------- 60 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLA-DEIVLIDINKDKAEGEAMDLQHAASFLPTPGVKVRAGD-----------Y-------- 60 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHHHCCHHHCCCCCEEEECCC-----------H--------
T ss_conf 911486189999999731503-18878834757789878655222222378611776189-----------7--------
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 729999997269989999803676667407899999998649849999504300040678888999999999863335
Q gi|254781176|r 87 ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 87 ~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
+-++|+|+|+||||-- .=+|+-|++.-..-++=++.-+.-+
T Consensus 61 -------~dc~daD~vVITAG~~------------------------------QKPGEtRL~Lv~~N~~I~K~Iv~~v 101 (302)
T TIGR01771 61 -------SDCKDADLVVITAGAP------------------------------QKPGETRLELVDRNVKIMKSIVPEV 101 (302)
T ss_pred -------HHHCCCCEEEEECCCC------------------------------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -------9963897899932777------------------------------5348887999998899999985465
No 54
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.31 E-value=0.49 Score=27.00 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.1
Q ss_pred EEEEEEECCCHHHHHHHHHH-CCC
Q ss_conf 17999966814799999998-589
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVS-SGL 38 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~-~~~ 38 (502)
||.+||+||+|..++-++.. .|.
T Consensus 10 ~ih~iGigG~GmsalA~~l~~~G~ 33 (459)
T PRK00421 10 RIHFVGIGGIGMSGLAEVLLNLGY 33 (459)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 899998668889999999996899
No 55
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.10 E-value=0.14 Score=30.94 Aligned_cols=36 Identities=28% Similarity=0.592 Sum_probs=29.7
Q ss_pred HHHC-CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 4543-86179999668147999999985899844999
Q gi|254781176|r 10 ITEL-KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVV 45 (502)
Q Consensus 10 ~~~~-~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~ 45 (502)
++-| +-++.|||+||.|+=+|+.|.+.|+....+|-
T Consensus 25 lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID 61 (263)
T COG1179 25 LEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLID 61 (263)
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9997509489994584539999999981888189971
No 56
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=92.90 E-value=0.8 Score=25.40 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCEEEEEEECCCHHHHH---HHHH---HCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86179999668147999---9999---85899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAV---NNMV---SSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~---~~~~---~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|-||...++- ..|. +..-.+...+++ +|...|....-+ .| . ..=
T Consensus 44 g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~L-sd~s~lTa~~ND----~g----------------~--e~i 100 (192)
T PRK00414 44 GGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSND----FG----------------Y--DYV 100 (192)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEC-CCHHHHHHHCCC----CC----------------H--HHH
T ss_conf 997999968588999999999874631446665432532-767775010076----64----------------8--899
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++...+.-|++|...+=|. +.-----++.||++|+.||+++- | .|. +|.+.+|..|.+
T Consensus 101 F~~Ql~~~~~~gDvLi~iS~SGn---S~Nii~A~~~Ak~~g~~~i~ltG--~--~GG-----------~l~~l~D~~i~V 162 (192)
T PRK00414 101 FSRYVEAVGREGDVLLGISTSGN---SGNIIKAIEAAREKGMKVITLTG--K--DGG-----------KMAGLADIEIRV 162 (192)
T ss_pred HHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEEC--C--CCH-----------HHHHHCCEEEEE
T ss_conf 99999981789999999768999---99999999999988998999977--9--961-----------477608979991
Q ss_pred HHHH
Q ss_conf 2788
Q gi|254781176|r 168 PNQN 171 (502)
Q Consensus 168 ~n~~ 171 (502)
|..+
T Consensus 163 ps~~ 166 (192)
T PRK00414 163 PHFG 166 (192)
T ss_pred CCCC
T ss_conf 8999
No 57
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=92.76 E-value=0.83 Score=25.27 Aligned_cols=166 Identities=19% Similarity=0.326 Sum_probs=96.4
Q ss_pred HHHCCCEEEEEE-ECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 454386179999-6681479999999858998449998255788551899704851554255678888838999999972
Q gi|254781176|r 10 ITELKPRITVFG-VGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 10 ~~~~~~~i~v~g-~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
+..|......+| +||.-+..+..+.+.++. ..|+-+.-+.+ .-.+|.=..+.|+=...| |.+.....++-
T Consensus 46 l~~LG~~~~a~g~~Gg~~G~~i~~~L~~~i~-~~~v~i~g~tR------~~i~i~~~~~~t~i~~~G--p~i~~~~~~~l 116 (309)
T PRK13508 46 LSEFGENVLATGFIGGELGQFIAEHLDDSIK-HAFYKIKGETR------NCIAILHEGQQTEILEKG--PEIDVQEADGF 116 (309)
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHCCCC-EEEEECCCCCC------EEEEEEECCCEEEEECCC--CCCCHHHHHHH
T ss_conf 9985998699996389747999999986997-46998579972------579999479679995679--99999999999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 99999972699899998036766674078999999986498499995043000406788889999999998-63335450
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQE-TVDTLIVI 167 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~-~~d~~i~i 167 (502)
.+.+.+.++..|+|.+.--+=-|.....-.-+.++||+.|+.++-=. - | +.|....+ ..+-.++-
T Consensus 117 l~~~~~~~~~~d~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~-s-----g--------~~L~~~l~~~~~P~lIK 182 (309)
T PRK13508 117 LHHFKQLLEKVEVVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDC-S-----G--------AALQAVLKSPYKPTVIK 182 (309)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-C-----H--------HHHHHHHHCCCCCCEEC
T ss_conf 99999870559999996888999985999999999985599899989-7-----6--------99999984657772774
Q ss_pred HHHHHH-HHCCCCCH-HHHHHH-HHHHHHHHHHH
Q ss_conf 278887-41366531-899974-46799999988
Q gi|254781176|r 168 PNQNLF-RIANDKTT-FADAFS-MADQVLYSGVS 198 (502)
Q Consensus 168 ~n~~l~-~~~~~~~~-~~~af~-~~d~~l~~~v~ 198 (502)
||..=+ ++.+..++ -.+.+. .+-+.+.++++
T Consensus 183 PN~~El~~l~G~~~~~~~~~~~~a~~~l~~~Gv~ 216 (309)
T PRK13508 183 PNIEELSQLLGKEVTEDLDELKEVLQQPLFEGIE 216 (309)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 5989999983998788699999999999864888
No 58
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.58 E-value=0.88 Score=25.10 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=105.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCC----------------EEEEECCCCCCCCCCCCCH
Q ss_conf 617999966814799999998589984499982557885518997----------------0485155425567888883
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK----------------QIIQLGSGITEGLGAGSHP 78 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~----------------~~~~~g~~~~~g~g~g~~~ 78 (502)
-||.+||.|.-|.-.+..+.+.++..-++++++-+...+...... ..|.|+. +|
T Consensus 3 ~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~~~~~~~~~~diIiLaV----------KP 72 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAV----------KP 72 (267)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHHHHCCCEEEEEE----------CH
T ss_conf 87999866899999999999779894528997799999999999739678578698872199999972----------87
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE--EEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 8999999972999999726998999980367666740789999999864984--99995043000406788889999999
Q gi|254781176|r 79 EVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL--TVGVVTKPFHFEGSRRMRVAESGIEA 156 (502)
Q Consensus 79 ~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~--~~~~v~~pf~~eg~~r~~~a~~~~~~ 156 (502)
..- .+-..+|+..+ +.-+|=++||..=-+=--..|--+++.|-|-=+ .++-=.+++.+ ++.-...-.+-+..
T Consensus 73 ~~~----~~vl~~l~~~~-~~~iISv~AGi~i~~l~~~l~~~~~ivR~MPN~~~~v~~G~t~i~~-~~~~~~~~~~~v~~ 146 (267)
T PRK11880 73 QVM----EDVLSELKGSL-DKLVVSIAAGITLARLERALGADLPVVRAMPNTPALVGAGMTALCA-NALVSEEQRAFALE 146 (267)
T ss_pred HHH----HHHHHHHHHHH-CCEEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHCCCCEEEEC-CCCCCHHHHHHHHH
T ss_conf 899----99999987650-8789991699999999988636870342087489997078646625-99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHH-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 998633354502788874136653--------189997-----------4467999999888887651665555898787
Q gi|254781176|r 157 LQETVDTLIVIPNQNLFRIANDKT--------TFADAF-----------SMADQVLYSGVSCITDLMIKEGLINLDFADV 217 (502)
Q Consensus 157 l~~~~d~~i~i~n~~l~~~~~~~~--------~~~~af-----------~~~d~~l~~~v~~i~~~i~~~g~in~df~d~ 217 (502)
|-+.+-.++.++++++++.+-.-. -|.+|| ..|-++..+.+.|-+.++.+.+ .+|+++
T Consensus 147 lf~~~G~~~~v~~E~~~d~~TalsGsGPAy~~~~~eal~~a~v~~Gl~~~~A~~l~~qt~~G~a~ll~~~~---~~p~~L 223 (267)
T PRK11880 147 LLSAVGEVVWVDDESQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPRETARKLAAQTVLGAAKLLLESG---EHPAEL 223 (267)
T ss_pred HHHHCCCEEEECCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC---CCHHHH
T ss_conf 99725867998842102211345177179999999999999998699799999999999999999998729---999999
Q ss_pred H-HHHCCCCEEEEEEE
Q ss_conf 8-76415865899876
Q gi|254781176|r 218 R-SVMRNMGRAMMGTG 232 (502)
Q Consensus 218 ~-~v~~~~g~a~~g~g 232 (502)
+ .|.+-+|.+.-|.-
T Consensus 224 ~~~V~SpgGtT~~gl~ 239 (267)
T PRK11880 224 RDNVTSPGGTTIAALR 239 (267)
T ss_pred HHHCCCCCHHHHHHHH
T ss_conf 9836799653999999
No 59
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=92.51 E-value=0.43 Score=27.39 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=40.9
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCC
Q ss_conf 543861799996681479999999858998449998255788551899704851554
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG 67 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~ 67 (502)
|-+.-++.|||+||=|+-++.+|-..|+- ....++-|. .+.|+-+..|+.+..
T Consensus 18 rL~~s~VLiiGaGgLGs~~~~~LA~AGVG--~i~i~D~D~--V~~SNLqRQ~Lf~e~ 70 (210)
T TIGR02356 18 RLLASHVLIIGAGGLGSPAALYLAAAGVG--TITIVDDDH--VDLSNLQRQILFAEE 70 (210)
T ss_pred HHHHCCEEEEEECHHHHHHHHHHHHCCCC--EEEEEECCE--ECHHHCHHHHHHCHH
T ss_conf 98608659997261456899999828883--789985167--701012055430324
No 60
>PRK13938 phosphoheptose isomerase; Provisional
Probab=92.35 E-value=0.94 Score=24.90 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=72.7
Q ss_pred CCEEEEEEECCCHHHHHH---HHHH---CCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 861799996681479999---9998---5899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVN---NMVS---SGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~---~~~~---~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|-||...++-- .|.. ..-.+..-+++++|...|....-+.-. -.=
T Consensus 45 g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gy----------------------e~v 102 (196)
T PRK13938 45 GARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDY----------------------DTV 102 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCH----------------------HHH
T ss_conf 9989999686889999999999863335789984745447880788887624789----------------------999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++.+.+--|+++....=|. +---.--++.||++|+.||++.- | .|. +|.+.+|-.|.+
T Consensus 103 F~rQl~al~~~gDvLi~iStSGn---S~NIi~A~~~Ak~~g~~~i~ltG--~--~gg-----------~l~~l~D~~i~v 164 (196)
T PRK13938 103 FARALEGSARPGDTLFAISTSGN---SMSVLRAAKTARELGVTVVAMTG--E--SGG-----------QLAEFADFLINV 164 (196)
T ss_pred HHHHHHHCCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEEC--C--CCC-----------HHHHCCCEEEEE
T ss_conf 99999971689998999779999---99999999999987998999988--9--963-----------177548989993
Q ss_pred HHHH
Q ss_conf 2788
Q gi|254781176|r 168 PNQN 171 (502)
Q Consensus 168 ~n~~ 171 (502)
|-+.
T Consensus 165 ps~~ 168 (196)
T PRK13938 165 PSRD 168 (196)
T ss_pred CCCC
T ss_conf 8998
No 61
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.99 E-value=1 Score=24.61 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=26.4
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH
Q ss_conf 5438617999966814799999998589984499982557
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA 50 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~ 50 (502)
+.|+-||.|+|.|..|-.+...+.+.|. +.++.+.+.
T Consensus 14 ~~l~~kvlV~GlG~SG~s~a~~L~~~G~---~v~~~D~~~ 50 (476)
T PRK00141 14 DALRGRVLVAGAGVSGLGIAKMLSELGC---DVVVADDNE 50 (476)
T ss_pred HHHCCCEEEEEECHHHHHHHHHHHHCCC---EEEEEECCC
T ss_conf 9869988999227889999999997899---799998998
No 62
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.35 E-value=0.41 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEC
Q ss_conf 17999966814799999998589984499982557885518997048515
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLG 65 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g 65 (502)
||.|||.||-||-++.+|...|+..+. .++-|.- ..|.-...++..
T Consensus 1 KVlvvGaGglG~e~lk~La~~Gvg~i~--ivD~D~I--e~SNLnRQfLf~ 46 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIH--IIDLDTI--DLSNLNRQFLFR 46 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE--EECCCCC--CCCCCCCCCCCC
T ss_conf 989988888899999999982898599--9719922--610146682768
No 63
>KOG1376 consensus
Probab=91.33 E-value=0.13 Score=31.19 Aligned_cols=149 Identities=17% Similarity=0.291 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC-CC--EEEEEECCCCCCCCCH-HHHHHHHHHHCCCEE-EEEEECCC--CCCCHHHH
Q ss_conf 888389999999729999997269-98--9999803676667407-899999998649849-99950430--00406788
Q gi|254781176|r 75 GSHPEVGRAAAEECIDEITEMLDK-TH--MCFVTAGMGGGTGTGA-APIIAKIARNKGVLT-VGVVTKPF--HFEGSRRM 147 (502)
Q Consensus 75 g~~~~~g~~~a~~~~~~i~~~~~~-~~--~~~~~ag~gggtgtg~-~p~ia~~a~~~~~~~-~~~v~~pf--~~eg~~r~ 147 (502)
-|.-.+|+.-.....+.|++.-+. +. =-.+---+|||||+|- ++...+++.+.|-.. +.+-..|- ..+--.--
T Consensus 104 rghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiypapqvSt~vveP 183 (407)
T KOG1376 104 RGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEP 183 (407)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66641231233779999999997622534258999625887678532103245545301134565555565534432577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 889999999998633354502788874136653189-9974467999999888887651665555898787876415
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA-DAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRN 223 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~-~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~ 223 (502)
-...-.-....++.|....+.|.-...+...++.+. -.|.--+.++++.|+.|+--..=+|-.|+|+.-+.|-+-.
T Consensus 184 ynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVp 260 (407)
T KOG1376 184 YNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVP 260 (407)
T ss_pred CCCCCCCEEECCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 64334530411357623532761001033304555776302300567766413434544588654048999860777
No 64
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.17 E-value=0.78 Score=25.48 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred EEEEEE-ECCCHHHHHHHHHHCCCCC----CEEEEECCC--HHHHH-----HCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 179999-6681479999999858998----449998255--78855-----18997048515542556788888389999
Q gi|254781176|r 16 RITVFG-VGGGGGNAVNNMVSSGLQG----VNFVVANTD--AQALM-----MSKAKQIIQLGSGITEGLGAGSHPEVGRA 83 (502)
Q Consensus 16 ~i~v~g-~gg~g~n~~~~~~~~~~~~----~~~~~~ntd--~~~l~-----~~~~~~~~~~g~~~~~g~g~g~~~~~g~~ 83 (502)
||.|+| -|+-|.+.+-++....+.| +++..++.- ...|. ...+ .-.+.++.=.+.|+
T Consensus 4 kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~------a~p~l~~i~~~~~~----- 72 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC------AFPLLKSVVATTDP----- 72 (325)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHC------CCCCCCCEEECCCH-----
T ss_conf 9999888718899999999758856899705999966778677655267457437------86455873522887-----
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCCC
Q ss_conf 99972999999726998999980367666740-------789999999864-----98499995043000
Q gi|254781176|r 84 AAEECIDEITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFHF 141 (502)
Q Consensus 84 ~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~~ 141 (502)
.++++|+|+||||||+=-.-|-- =+.++..+++.. .-..|-||+-|-+.
T Consensus 73 ---------~~a~~~aDvvii~ag~prkpGmtR~DLl~~Na~I~k~~~~~I~~~a~p~~~viVv~NPvn~ 133 (325)
T cd01336 73 ---------EEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANT 133 (325)
T ss_pred ---------HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf ---------8983688789994887799998279999989999999999999861458199992793588
No 65
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.14 E-value=1.1 Score=24.41 Aligned_cols=43 Identities=28% Similarity=0.510 Sum_probs=33.8
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 438617999966814799999998589984499982557885518
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
.-+|||.|+|.|+-|+=.--+|.+.|.. |.|++ ..+.+++...
T Consensus 3 ~~~~kI~IiGaGAiG~~~a~~L~~aG~~-V~li~-r~~~~ai~~~ 45 (313)
T PRK06249 3 SETPRIAIIGTGAIGGFYGAMLARAGFD-VHFLL-RSDYEAVREN 45 (313)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEE-CCHHHHHHHC
T ss_conf 9988899999149999999999966995-69996-7559999868
No 66
>PRK13936 phosphoheptose isomerase; Provisional
Probab=91.12 E-value=1.2 Score=23.98 Aligned_cols=122 Identities=14% Similarity=0.233 Sum_probs=76.2
Q ss_pred CCEEEEEEECCCHHHHHH---HHH---HCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 861799996681479999---999---85899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVN---NMV---SSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~---~~~---~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|-||....+-- .|. ...-.+..-|++++|.-.|.....+. | . ..-
T Consensus 43 g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~~lpai~L~~d~~~lTai~ND~----g------------~------~~v 100 (197)
T PRK13936 43 EGKILACGNGGSAADAQHFSSELLNRFERERPSLPAIALTTDSSTLTAIANDY----S------------Y------NEV 100 (197)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCHHHCCCCCCCEEEECCCCHHHHCCCCCC----C------------H------HHH
T ss_conf 99899996878999999999998665412788875576436740110102787----8------------9------999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++...+.-|++|....=|. +.--.--++.||++|+.||+++.. +|.+ +..|.+..|..|.+
T Consensus 101 f~rQl~a~~~~gDili~iS~SGn---S~Nii~A~~~A~~~g~~~i~ltG~----dgg~--------l~~l~~~~Di~i~v 165 (197)
T PRK13936 101 FSKQVRALGQPGDVLLAISTSGN---SANVIQAIQAAHEREMHVVALTGR----DGGK--------MASLLLPEDVEIRV 165 (197)
T ss_pred HHHHHHHHCCCCCEEEEEECCCC---CHHHHHHHHHHHHCCCEEEEEECC----CCHH--------HHHHCCCCCEEEEC
T ss_conf 99999983899998999969999---989999999999859959999816----8535--------67525668989981
Q ss_pred HHHHH
Q ss_conf 27888
Q gi|254781176|r 168 PNQNL 172 (502)
Q Consensus 168 ~n~~l 172 (502)
|.+.-
T Consensus 166 ps~~~ 170 (197)
T PRK13936 166 PHDRT 170 (197)
T ss_pred CCCCH
T ss_conf 99970
No 67
>PRK05442 malate dehydrogenase; Provisional
Probab=91.06 E-value=0.66 Score=26.02 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=55.5
Q ss_pred EEEEEE-ECCCHHHHHHHHHHCCCCC----CEEEEECC--CHHHHH-----HCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 179999-6681479999999858998----44999825--578855-----18997048515542556788888389999
Q gi|254781176|r 16 RITVFG-VGGGGGNAVNNMVSSGLQG----VNFVVANT--DAQALM-----MSKAKQIIQLGSGITEGLGAGSHPEVGRA 83 (502)
Q Consensus 16 ~i~v~g-~gg~g~n~~~~~~~~~~~~----~~~~~~nt--d~~~l~-----~~~~~~~~~~g~~~~~g~g~g~~~~~g~~ 83 (502)
|+.|+| -|+-|.+.+-++....+.| +++...+. ....|. .+.+.--++ ++.=..
T Consensus 6 kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~a~p~l------~~v~~~-------- 71 (325)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDCAFPLL------AGVVIT-------- 71 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCCCCC------CCEEEE--------
T ss_conf 999988886888999999866132089984699996577766655667734211675444------876850--------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------HHHHHHHHHHHC-----CCEEEEEEECCCCC
Q ss_conf 99972999999726998999980367666740-------789999999864-----98499995043000
Q gi|254781176|r 84 AAEECIDEITEMLDKTHMCFVTAGMGGGTGTG-------AAPIIAKIARNK-----GVLTVGVVTKPFHF 141 (502)
Q Consensus 84 ~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg-------~~p~ia~~a~~~-----~~~~~~~v~~pf~~ 141 (502)
....++++|+|+|+||||+--.-|-- =+.++..+++.. .-..|-||+-|-+.
T Consensus 72 ------~~~~~a~~~aDvviitag~prkPGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlVv~NPvd~ 135 (325)
T PRK05442 72 ------DDPKVAFKDADVALLVGARPRGPGMERKDLLKANGEIFTAQGKALNEVAARDVKVLVVGNPANT 135 (325)
T ss_pred ------CCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf ------8878983799889980786799997489999760889999999998657987189995781587
No 68
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.03 E-value=0.6 Score=26.35 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=49.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
||.|||+|=-|+..--.+.+.++. ...++++.+.+.|.......-|- +..+.+.+.
T Consensus 8 ~I~IiGlGLIGgSlA~alk~~~~~-~~I~g~d~~~~~l~~A~~~g~id-----------------------~~~~~~~e~ 63 (307)
T PRK07502 8 RVALIGLGLIGSSLARAIRRQGLA-GEIVGAARSAETRARARELGLGD-----------------------RVTTSAAEA 63 (307)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHHHCCCCC-----------------------HHCCCHHHH
T ss_conf 689992787999999999854998-57999849999999999869975-----------------------112777664
Q ss_pred HCCCCEEEEEEC
Q ss_conf 269989999803
Q gi|254781176|r 96 LDKTHMCFVTAG 107 (502)
Q Consensus 96 ~~~~~~~~~~ag 107 (502)
+.++|+|||+.-
T Consensus 64 ~~~~DlIilatP 75 (307)
T PRK07502 64 VKGADLVILCVP 75 (307)
T ss_pred HCCCCEEEEECC
T ss_conf 045897999178
No 69
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.01 E-value=0.47 Score=27.10 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=31.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEC
Q ss_conf 17999966814799999998589984499982557885518997048515
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLG 65 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g 65 (502)
||.|||.||-||-++.+|...|+..+.. ++-|.- ..+.-...++..
T Consensus 1 kvlvvG~GglG~e~~k~la~~Gvg~i~i--vD~d~i--~~sNL~rQflf~ 46 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHV--IDMDTI--DVSNLNRQFLFR 46 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCCEE--CCCCCCCCCCCC
T ss_conf 9899928888999999999848985999--739934--413565674676
No 70
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=90.67 E-value=0.84 Score=25.23 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=86.0
Q ss_pred EEEEECCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99950430004067-88889999999998633354502788874136653189--9974467999999888887651665
Q gi|254781176|r 132 VGVVTKPFHFEGSR-RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA--DAFSMADQVLYSGVSCITDLMIKEG 208 (502)
Q Consensus 132 ~~~v~~pf~~eg~~-r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~--~af~~~d~~l~~~v~~i~~~i~~~g 208 (502)
-.|+..|-.|.|++ |.+-++.=+++++...+.+ ++=+-+.+.++..++. -+-.+++.+..-.+.. .-..
T Consensus 210 C~FC~~p~~~~Gr~~R~RSpe~VvdEIe~l~~~y---~gv~~~~f~DD~Ft~~~~r~~eic~~i~~l~i~W-----~~~~ 281 (472)
T TIGR03471 210 CTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF---PEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTW-----SCNA 281 (472)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE-----EEEE
T ss_conf 9687882102688662159999999999999866---8975899947766789999999999998769827-----8763
Q ss_pred CCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC--EEEE---EEECCCCCCHHHHHHHH
Q ss_conf 555898787876415865899876148620489999887527010002245553--7899---96168888999999999
Q gi|254781176|r 209 LINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQ--GLLI---SITGGSDLTLFEVDEAA 283 (502)
Q Consensus 209 ~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~--~~l~---~i~~~~~~~l~e~~~~~ 283 (502)
.+|+|.. +-..|+.+|--.+.+|.-||..+..+.+.+-++---. ...++-++ |+.+ .|.|-+.=|..++.+..
T Consensus 282 Rv~~d~E-~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~-~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~Ti 359 (472)
T TIGR03471 282 RANVDYE-TLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIA-RRFTRDCHKLGIKVHGTFILGLPGETRETIRKTI 359 (472)
T ss_pred ECCCCHH-HHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHH-HHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf 0348999-9999998398489980375899999985389989999-9999988757987999998779999889999999
Q ss_pred HHHHHHC
Q ss_conf 9999741
Q gi|254781176|r 284 TRIREEV 290 (502)
Q Consensus 284 ~~i~~~~ 290 (502)
+++++.-
T Consensus 360 ~fa~~l~ 366 (472)
T TIGR03471 360 DFAKELN 366 (472)
T ss_pred HHHHHCC
T ss_conf 9999759
No 71
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=90.19 E-value=0.5 Score=26.89 Aligned_cols=97 Identities=24% Similarity=0.209 Sum_probs=65.6
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEE------------------EEECCCHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 43861799996681479999999858998449------------------998255788551899704851554255678
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNF------------------VVANTDAQALMMSKAKQIIQLGSGITEGLG 73 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~------------------~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g 73 (502)
.|-.|+-|||=|+||..|--...+.|.+ |-+ =+++|..|.-..+.=......-..+-.|.|
T Consensus 407 ~lP~rVIVVGsGlAGLSAAIeA~e~Gak-VVLLEKmp~lGGNS~KASSGINgAgT~~Qk~~GI~DS~ElF~~DTlKSGkG 485 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQ-VILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 8998689989757999999999977995-799957898887400331573668977789709988888999998873378
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC
Q ss_conf 888838999999972999999726-9989999803676
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLD-KTHMCFVTAGMGG 110 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~-~~~~~~~~ag~gg 110 (502)
...||++-+.-+..|.+.|.=+-+ |.++= .++-|||
T Consensus 486 ~n~DPeLVr~La~~SadAIeWL~e~GVdLs-~LsqLGG 522 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLT-VLSQLGG 522 (1167)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCHH-HHCCCCC
T ss_conf 999979999999734889999998499847-7024568
No 72
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.19 E-value=0.56 Score=26.56 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=62.5
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf 38617999966814799999998589984499982557885518997048515542556788888389999999------
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAE------ 86 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~------ 86 (502)
.+-|+.|||+||-||.+..++...|+. .+..++-|. ...|+-...++.... -+|. .+.++.++...
T Consensus 20 ~~s~VlivG~GGlGs~~~~~La~~Gvg--~i~lvD~D~--ve~sNLnRQ~l~~~~---diG~-~K~~~a~~~l~~iNp~i 91 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDV--VELSNLQRQILHTEA---DVGQ-PKAEAAAERLRAINPDV 91 (228)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCC--CCCCCCHHHHEECHH---HCCC-CHHHHHHHHHHHHCCCC
T ss_conf 649789988778899999999983997--589997874--556764221023786---6878-95999999998548875
Q ss_pred ------H--HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf ------7--299999972699899998036766674078999999986498499
Q gi|254781176|r 87 ------E--CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 87 ------~--~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
+ +.+.+.+.+++.|+|+-++. .--+--.+.++|.+.++--|
T Consensus 92 ~i~~~~~~i~~~~~~~~~~~~DlVid~~D-----n~~~R~~ln~~~~~~~iP~i 140 (228)
T cd00757 92 EIEAYNERLDAENAEELIAGYDLVLDCTD-----NFATRYLINDACVKLGKPLV 140 (228)
T ss_pred CCEEHHHCCCHHHHHHHHHCCCEEEECCC-----CHHHHHHHHHHHHHCCCCEE
T ss_conf 30313210057569988737989998779-----98899999999998399889
No 73
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=89.96 E-value=1.6 Score=23.27 Aligned_cols=192 Identities=16% Similarity=0.226 Sum_probs=104.5
Q ss_pred HHHHHHH--CCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCC--CEEEEE----------EECCCCCCCHHHHHHHHHHH
Q ss_conf 9999972--699899998036766674-07899999998649--849999----------50430004067888899999
Q gi|254781176|r 90 DEITEML--DKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKG--VLTVGV----------VTKPFHFEGSRRMRVAESGI 154 (502)
Q Consensus 90 ~~i~~~~--~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~--~~~~~~----------v~~pf~~eg~~r~~~a~~~~ 154 (502)
++|.+.| .+-|++|++ ||-|| .+|-.|++-++++| +-+||| +-.-|-|+ --...|.+.|
T Consensus 177 ~~iVd~L~~~gId~LfvI----GGDGTlrgA~~I~~e~~~Rgl~I~VVGIPKTIDNDI~~~D~TFGFd--TAVe~AteAI 250 (486)
T PTZ00286 177 KEMVDTLVRMKINILFTV----GGDGTQRGALKIYEEAKRRGENIAVFGVPKTIDNDLAFSHRTFGFQ--TAVEQAVNAV 250 (486)
T ss_pred HHHHHHHHHCCCCEEEEE----CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHCCCCHH--HHHHHHHHHH
T ss_conf 999999998599989997----8846688999999999971788506646854357641001002402--3999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 9999863335450278-88741366531899974467999999888887651665---5558987878764158658998
Q gi|254781176|r 155 EALQETVDTLIVIPNQ-NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEG---LINLDFADVRSVMRNMGRAMMG 230 (502)
Q Consensus 155 ~~l~~~~d~~i~i~n~-~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g---~in~df~d~~~v~~~~g~a~~g 230 (502)
..+.-.+-+. +|- -|.++.+...+|--+++ .|+ .+-+|+...|- -.+==+.-++.-++..|.|++-
T Consensus 251 ~~ah~EA~sa---~nGIGlVkLMGR~SGfIA~~A----~LA---s~~vd~cLIPE~pf~~~Gll~~le~Rl~~~ghaVIV 320 (486)
T PTZ00286 251 RAAYAEAVSL---NYGVGIVKLMGRESGFIAAQT----AVA---SAQANICLIPENPLPKETVMRLIERRFQQSRNCVII 320 (486)
T ss_pred HHHHHHHHCC---CCCEEEEEECCCCCCHHHHHH----HHC---CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9998875235---685189997255512899887----751---387778992487778005999999999847987999
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEEEECCCCCC
Q ss_conf 76148620489999887527010002245553789996168888999999999999974--1688639998531346575
Q gi|254781176|r 231 TGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREE--VDSEANIILGATFDEALEG 308 (502)
Q Consensus 231 ~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~--~~~~a~ii~G~~~d~~~~~ 308 (502)
..|+.|++- +....-+.|.|=.+.. |+.++=-+++.++.+.. ...++++.| +||+.
T Consensus 321 VAEGAGQd~-------------~~~~~~~DaSGN~~l~----DIG~~Lk~~I~~~f~~~~~~~~~~~lKY---IDPsY-- 378 (486)
T PTZ00286 321 VAEGFGQDW-------------ETGTGGHDASGNKKLI----DIGFILKKEVEAWLRANKEKYPQGTVKY---IDPSY-- 378 (486)
T ss_pred EECCCCCCC-------------CCCCCCCCCCCCEECH----HHHHHHHHHHHHHHHHCCCCCCCCEEEE---ECCCC--
T ss_conf 934677433-------------3556885898898515----5899999999999986475467640587---66874--
Q ss_pred EEEEEEEEECCC
Q ss_conf 479999851355
Q gi|254781176|r 309 VIRVSVVATGIE 320 (502)
Q Consensus 309 ~~~v~~iatg~d 320 (502)
+-=++-|...|
T Consensus 379 -mIRsvpANa~D 389 (486)
T PTZ00286 379 -MIRACPPSSND 389 (486)
T ss_pred -EEECCCCCCHH
T ss_conf -26527899307
No 74
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.90 E-value=0.46 Score=27.17 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=55.5
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH------
Q ss_conf 43861799996681479999999858998449998255788551899704851554255678888838999999------
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA------ 85 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a------ 85 (502)
-.+-++.|||+||-||.+.-++...|+.. +..++-|.- ..|+-+..++.-.. -+| -.+.++.++..
T Consensus 30 L~~s~VlivG~GGlG~~~~~~La~aGvg~--i~lvD~D~v--e~sNLnRQ~l~~~~---diG-~~Kv~~a~~~l~~inp~ 101 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAAAQYLAAAGVGT--LTLVDFDTV--SLSNLQRQVLHDDA---TIG-QPKVESAKAALARINPH 101 (245)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCE--EEEEECCCC--CCCCHHHHHCCCHH---HCC-CCHHHHHHHHHHHHCCC
T ss_conf 97197899877777899999999859965--999968867--88867888645987---789-88799999999975887
Q ss_pred ------HH--HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf ------97--2999999726998999980367666740789999999864984
Q gi|254781176|r 86 ------EE--CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130 (502)
Q Consensus 86 ------~~--~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~ 130 (502)
.+ +.+.+.+.+++.|+|+=++- .--+--.|.+++.+.++-
T Consensus 102 i~i~~~~~~i~~~n~~~li~~~DlViD~~D-----n~~~R~~ln~~c~~~~~P 149 (245)
T PRK05690 102 IAIETINARLDDDELAALIAAHDLVLDCTD-----NVATRNQLNAACFAAKKP 149 (245)
T ss_pred CCEEEEHHCCCHHHHHHHHHCCCEEEECCC-----CHHHHHHHHHHHHHCCCC
T ss_conf 522633314488899887507888998789-----999999999999971998
No 75
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.80 E-value=0.8 Score=25.41 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred EEEEEEECCCH-HHHHHHHHH-C-CCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 17999966814-799999998-5-89984499982557885518997048515542556788888389999999729999
Q gi|254781176|r 16 RITVFGVGGGG-GNAVNNMVS-S-GLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g-~n~~~~~~~-~-~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
||.+||=|++- ...+..++. . .+.+-++.-++.|...|..+..- .+.+.+-+|+....+ .--..
T Consensus 2 KI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~l-----a~~~~~~~g~~~~i~--------~ttdr 68 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA-----VKILFKENYPEIKFV--------YTTDP 68 (437)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHH-----HHHHHHHHCCCEEEE--------EECCH
T ss_conf 69998984687799999998282006988899977999999999999-----999998529981799--------96799
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 99726998999980367666740789999999864984
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~ 130 (502)
+++|+|+|.||.+.--||- -+--.=-+|..+.|++
T Consensus 69 ~eAL~gADfVi~~irvGg~---~~r~~De~Ip~kyGiv 103 (437)
T cd05298 69 EEAFTDADFVFAQIRVGGY---AMREQDEKIPLKHGVV 103 (437)
T ss_pred HHHHCCCCEEEEEEEECCC---HHHHHHHHHHHHCCCC
T ss_conf 9985799999996652683---2678887679875977
No 76
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=89.77 E-value=1.6 Score=23.17 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=68.5
Q ss_pred HHHHHHCCCCCCEEEE-ECCCHHHHHH--CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999985899844999-8255788551--899704851554255678888838999999972999999726998999980
Q gi|254781176|r 30 VNNMVSSGLQGVNFVV-ANTDAQALMM--SKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTA 106 (502)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~ntd~~~l~~--~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~a 106 (502)
+|+.|-..+.|...+. +.|=.+++.. ...+.-|+|..-+.+|.| .+-..+|+..--..|++||||
T Consensus 15 ih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~G------------i~lL~~ir~~~~~~DVI~iTA 82 (224)
T COG4565 15 IHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNG------------IELLPELRSQHYPVDVIVITA 82 (224)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCC------------HHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999973899538986064999999998408997999602679850------------779999984689978899953
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 367666740789999999864984999950430004067888899999999986
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET 160 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~ 160 (502)
-=- ..-+..-+-.=++...-+||.|| |+++|...-.+-++.
T Consensus 83 A~d----------~~tI~~alr~Gv~DYLiKPf~~e---Rl~~aL~~y~~~r~~ 123 (224)
T COG4565 83 ASD----------METIKEALRYGVVDYLIKPFTFE---RLQQALTRYRQKRHA 123 (224)
T ss_pred CCH----------HHHHHHHHHCCCHHHEECCEEHH---HHHHHHHHHHHHHHH
T ss_conf 443----------78999999658232205634099---999999999999999
No 77
>KOG2015 consensus
Probab=89.73 E-value=0.73 Score=25.69 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=41.0
Q ss_pred HHHC-CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHCCCCEEEEECC
Q ss_conf 4543-86179999668147999999985899844999825-578855189970485155
Q gi|254781176|r 10 ITEL-KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT-DAQALMMSKAKQIIQLGS 66 (502)
Q Consensus 10 ~~~~-~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt-d~~~l~~~~~~~~~~~g~ 66 (502)
++-+ .-||.|||-||-||-.+.++...|...++.|-++| |.-+|++.---++--+|+
T Consensus 35 l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~ 93 (422)
T KOG2015 35 LEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGE 93 (422)
T ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCEECCCCHHHHCCCCCCCCC
T ss_conf 89886181899806863279987677624551689850325314410232303311685
No 78
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.67 E-value=1.6 Score=23.12 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 8617999966814799999998589984499982
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVAN 47 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n 47 (502)
.-||.|+|+|..|..++..+.+.| .++++.+
T Consensus 14 ~kkv~i~GlG~sG~a~a~~L~~~g---~~v~~~D 44 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG---AKVTAFD 44 (458)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC---CEEEEEE
T ss_conf 996999978788999999999788---9799998
No 79
>KOG1495 consensus
Probab=89.64 E-value=1 Score=24.60 Aligned_cols=145 Identities=20% Similarity=0.258 Sum_probs=76.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCC-CCEEEEECCC--------HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 86179999668147999999985899-8449998255--------78855189970485155425567888883899999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQ-GVNFVVANTD--------AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAA 84 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~-~~~~~~~ntd--------~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~ 84 (502)
.-||.|+|+|.-|.-+--.+...++. .+-++-+|-| .||=+...-..+|..+..++
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~--------------- 84 (332)
T KOG1495 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYS--------------- 84 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEECCCCC---------------
T ss_conf 74489982464889999999975033406988627203321254000233002688367667632---------------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99729999997269989999803676667407899999998649849999504300040678888999999999863335
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
.-.++++|+||||--+- ||+.|+..-+.-.+-++.-.-.+
T Consensus 85 ----------~sa~S~lvIiTAGarq~------------------------------~gesRL~lvQrNV~ifK~iip~l 124 (332)
T KOG1495 85 ----------VSANSKLVIITAGARQS------------------------------EGESRLDLVQRNVDIFKAIIPAL 124 (332)
T ss_pred ----------CCCCCCEEEEECCCCCC------------------------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------34798689995677789------------------------------87178999998899999987888
Q ss_pred HHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHCCC
Q ss_conf 4502-788874136653189997446799999988888765166---55558987878764158
Q gi|254781176|r 165 IVIP-NQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKE---GLINLDFADVRSVMRNM 224 (502)
Q Consensus 165 i~i~-n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~---g~in~df~d~~~v~~~~ 224 (502)
.-.+ +-.|+=+.+| =++|....--++-+=.++ .=-|||-+-+|-.|.+-
T Consensus 125 v~ySpd~~llvvSNP-----------VDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~ 177 (332)
T KOG1495 125 VKYSPDCILLVVSNP-----------VDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNR 177 (332)
T ss_pred HHCCCCEEEEEECCC-----------HHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH
T ss_conf 504887089996580-----------37888888987189623355667675389999999987
No 80
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.47 E-value=0.8 Score=25.41 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=26.4
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 1799996681479999999858998449998255
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD 49 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd 49 (502)
||.|+|.||-||-++..|...|+..+.. ++-|
T Consensus 1 KVlvvGaGglGce~~k~La~~Gvg~i~i--iD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV--IDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCC
T ss_conf 9899948887999999999839986999--7599
No 81
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=88.85 E-value=0.38 Score=27.77 Aligned_cols=142 Identities=24% Similarity=0.292 Sum_probs=81.1
Q ss_pred CEEEEEEECCC--HHHHHHHHHHC-CCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 61799996681--47999999985-8998449998255788551899704851554255678888838999999972999
Q gi|254781176|r 15 PRITVFGVGGG--GGNAVNNMVSS-GLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 15 ~~i~v~g~gg~--g~n~~~~~~~~-~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
.||.+||=|.+ .-..|..+... .+.+.+++.++.|...|.....-.+. +-+..|+.-.. +.--.
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~-----~~~~~~~~~~v--------~~Ttd 67 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKK-----IVEELGAPLKI--------EATTD 67 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH-----HHHHHCCCEEE--------EEECC
T ss_conf 979999986487599999999608457899899988999999999999999-----99851998189--------99689
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 999726998999980367666740789999999864984-9999504300040678888999999999863335450-27
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL-TVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI-PN 169 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~-~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i-~n 169 (502)
.+++|+|+|.||.+.--||= -+--.=-+|+.+.|++ +||-.+=| -=+-.|...|--+.+.++.+--+ |+
T Consensus 68 ~~eAl~gADfV~~~irvGg~---~~r~~De~Iplk~Gv~~~vGET~G~------GG~~~alRtIPv~leia~~i~e~~P~ 138 (423)
T cd05297 68 RREALDGADFVINTIQVGGH---EYTETDFEIPEKYGYYQTVGDTSGP------GGIFRALRTIPVLLDIARDIEELCPD 138 (423)
T ss_pred HHHHHCCCCEEEEEEEECCC---HHHHHHHHHHHHCCCCEEECCCCCH------HHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 99984689999998774682---4889888489883966044565477------58999862289999999999987998
Q ss_pred HHHHHHCCC
Q ss_conf 888741366
Q gi|254781176|r 170 QNLFRIAND 178 (502)
Q Consensus 170 ~~l~~~~~~ 178 (502)
=-|+...+|
T Consensus 139 AwiiNytNP 147 (423)
T cd05297 139 AWLLNYANP 147 (423)
T ss_pred CEEEECCCH
T ss_conf 389976788
No 82
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.57 E-value=1.4 Score=23.72 Aligned_cols=107 Identities=13% Similarity=0.242 Sum_probs=63.6
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHH--HHHHH----
Q ss_conf 438617999966814799999998589984499982557885518997048515542556788888389--99999----
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEV--GRAAA---- 85 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~--g~~~a---- 85 (502)
-.+-|+.|||.||-||-+..++...|+. .+..++-|.- ..|+-+..++....- .|. +.|.+ +++..
T Consensus 22 L~~s~VlIVGaGGLGs~~a~~La~aGVG--~l~ivD~D~V--e~SNL~RQ~L~~~~D---ig~-~k~Ka~aA~~~L~~iN 93 (337)
T PRK12475 22 IREKHVLIIGAGALGAANAEALVRAGIG--KLTIADRDYV--EWSNLQRQQLYTEED---AKQ-YKPKAIAAAEHLRKIN 93 (337)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCEE--CCCCCCCCCCCCHHH---CCC-CCHHHHHHHHHHHHHC
T ss_conf 8639699997777789999999982898--6999849983--144674530022212---155-7488999999998449
Q ss_pred ----------HHHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEE
Q ss_conf ----------97299999972699899998036766674-078999999986498499
Q gi|254781176|r 86 ----------EECIDEITEMLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 86 ----------~~~~~~i~~~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~~ 132 (502)
.-+.+.+.+++++.|+|+= +|-. -.--.|.++|.+.++--|
T Consensus 94 p~v~I~~~~~~l~~~n~~~li~~~DlViD------~tDNf~tR~liNd~c~~~~~PlV 145 (337)
T PRK12475 94 SEVEIVPVVTDVTVEEMEELIKEVDLIID------ATDNFDTRLLINDISQKYNIPWI 145 (337)
T ss_pred CCCCEEEEHHCCCHHHHHHHHHHCCEEEE------CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 99744751311997999999861889998------88899999999999999699989
No 83
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.50 E-value=1.9 Score=22.55 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=64.3
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHH----
Q ss_conf 4386179999668147999999985899844999825578855189970485155425567888-88389999999----
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAG-SHPEVGRAAAE---- 86 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g-~~~~~g~~~a~---- 86 (502)
-.+.|+.|||+||-||-+..++...|+. .+..++-|.- ..|+-+..++.... ..|.+ -+.+.+++...
T Consensus 22 L~~a~VlVvGaGGLGs~~a~~La~aGVG--~i~ivD~D~V--e~SNL~RQ~L~~e~---Dig~~~pKa~aA~~~L~~iNp 94 (339)
T PRK07688 22 IREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYV--EWSNLQRQQLYTES---DVKNNLPKAVAAKKRLEEINS 94 (339)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCEE--CCCCCCCCCCCCHH---HHCCCCHHHHHHHHHHHHCCC
T ss_conf 8629789987777779999999984898--2999809992--46678865065621---332263779999999983499
Q ss_pred ----------HHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEE
Q ss_conf ----------7299999972699899998036766674-07899999998649849
Q gi|254781176|r 87 ----------ECIDEITEMLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLT 131 (502)
Q Consensus 87 ----------~~~~~i~~~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~ 131 (502)
-+.+.+.+++++.|+|+= +|-. -.--.|.++|.+.++--
T Consensus 95 ~v~I~~~~~~l~~~n~~~li~~~DlViD------~tDNf~tR~liNd~c~~~~~Pl 144 (339)
T PRK07688 95 EVRVEAIVQDVTAEELEELVTNVDVIID------ATDNFETRFIVNDAAQKYSIPW 144 (339)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCEEEE------CCCCHHHHHHHHHHHHHHCCCE
T ss_conf 8605876003998999999851889998------7889999999999999959998
No 84
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.20 E-value=2 Score=22.42 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
+-||.|+|+||-|+-+..++...|+..+.++ +.|.- ..+....-.++.. -++|+.-|+-+...++
T Consensus 19 ~s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~--D~~~v--~~~dl~~qf~~~~-----------~dvg~~ra~~~~~~l~ 83 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLH--DTKPC--SWSDLSSQFYLRE-----------EDIGKNRAEASQARLA 83 (286)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEE--ECCCC--CHHHCCCCCCCCH-----------HHCCCCHHHHHHHHHH
T ss_conf 5929999987639999999997399659999--59968--8677634722577-----------7857888999999999
Q ss_pred HH
Q ss_conf 97
Q gi|254781176|r 94 EM 95 (502)
Q Consensus 94 ~~ 95 (502)
++
T Consensus 84 ~l 85 (286)
T cd01491 84 EL 85 (286)
T ss_pred HH
T ss_conf 64
No 85
>PRK02947 hypothetical protein; Provisional
Probab=87.94 E-value=2.1 Score=22.31 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=77.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1799996681479999999858-998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSG-LQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~-~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
.|.+||.|-..+=+..-.++.| +-++.-|.. . .| .+-....+..--=-.|.+| +.|.+
T Consensus 43 ~i~~fGtGHS~~~a~E~f~RAGGla~~~pI~~-~---~l---------~~~~g~~~s~~~ER~~g~a--------~~il~ 101 (247)
T PRK02947 43 RIYVFGTGHSHMAAEEVFYRAGGLAPFNPILE-P---SL---------MLHEGAVASSYLERIEGYA--------KLILD 101 (247)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCC-C---CC---------CCCCCCCCCCHHHCCCCHH--------HHHHH
T ss_conf 79998885164899987411476433130034-1---10---------2547866653122255099--------99998
Q ss_pred H--HCCCCEEEEEECCCCCCCCCHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH---------
Q ss_conf 7--269989999803676667407899-9999986498499995043000406788889999999998633---------
Q gi|254781176|r 95 M--LDKTHMCFVTAGMGGGTGTGAAPI-IAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVD--------- 162 (502)
Q Consensus 95 ~--~~~~~~~~~~ag~gggtgtg~~p~-ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d--------- 162 (502)
. +..-|+++|..- .|.-++|| +|..||++|+.||+|.++.++---+.|.. .=.+|.+.+|
T Consensus 102 ~~~i~~~Dvlii~Sn----SG~N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~----SGkkL~d~aDiviDN~~p~ 173 (247)
T PRK02947 102 RYPIRPGDVLIIVSN----SGRNAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHS----SGKRLYEVADVVIDNGAPK 173 (247)
T ss_pred HCCCCCCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCC----CCCEEHHHCCEEEECCCCC
T ss_conf 679999988999967----87776899999999986996999966788167899897----6671156366786579998
Q ss_pred --HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --354502788874136653189997446799999988888
Q gi|254781176|r 163 --TLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCIT 201 (502)
Q Consensus 163 --~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~ 201 (502)
+++.+++- -.-.++--|+. +..+.+.++...++-+.
T Consensus 174 GDA~l~i~g~--~~kvgp~STi~-g~~i~n~i~~e~~~~L~ 211 (247)
T PRK02947 174 GDAVLEIEGL--EAKVGPTSTVV-GVAILNAIFAEAAEELV 211 (247)
T ss_pred CCEEEEECCC--CCCCCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 7658987897--77757577899-99999999999999999
No 86
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.85 E-value=2.1 Score=22.27 Aligned_cols=120 Identities=15% Similarity=0.283 Sum_probs=60.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC--CHHHH---HHCCCCEEEEECCC----------CCCCCCC-CCCH
Q ss_conf 6179999668147999999985899844999825--57885---51899704851554----------2556788-8883
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT--DAQAL---MMSKAKQIIQLGSG----------ITEGLGA-GSHP 78 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt--d~~~l---~~~~~~~~~~~g~~----------~~~g~g~-g~~~ 78 (502)
-||.|+|+|+.|-.++..+.+.| .++.+.+. ....+ .+.....++.+|.. +...-|- -.+|
T Consensus 6 k~v~viGlG~sG~s~a~~L~~~G---~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~~p 82 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CEEEEEEECHHHHHHHHHHHHCC---CEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCCCH
T ss_conf 98999998999999999999789---919999799995318999743699689937863650159999998995389999
Q ss_pred HHHHHHHHH------HHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE--EEEEEECCCC
Q ss_conf 899999997------29999997269-98999980367666740789999999864984--9999504300
Q gi|254781176|r 79 EVGRAAAEE------CIDEITEMLDK-THMCFVTAGMGGGTGTGAAPIIAKIARNKGVL--TVGVVTKPFH 140 (502)
Q Consensus 79 ~~g~~~a~~------~~~~i~~~~~~-~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~--~~~~v~~pf~ 140 (502)
++-+. -.. ..+-..+.+.. ..-++-++|--|.|=| +-.|+.+.+..|.- ..|=+-.|+.
T Consensus 83 ~l~~a-~~~gi~i~~~~el~~~~~~~~~~~~IaVTGTnGKTTT--tsli~~iL~~~g~~~~~~GNiG~p~~ 150 (445)
T PRK04308 83 DIEAF-KQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTV--TSLVGYLCIKCGLDTVIAGNIGTPVL 150 (445)
T ss_pred HHHHH-HHCCCCEECHHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 99999-9759957159999999984169957999489983779--99999999975996299850375211
No 87
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.76 E-value=2.2 Score=22.23 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=29.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 861799996681479999999858998449998255788551
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM 55 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~ 55 (502)
.-||.|+|.|..|-.+...+.+.| ...++.+...+.|..
T Consensus 3 ~KkvlV~GlG~SG~s~a~~L~~~g---~~v~~~D~~~~~~~~ 41 (418)
T PRK00683 3 LQRVVVLGLGVTGKSVARFLAQKG---VYVIGVDNSLEALQS 41 (418)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC---CEEEEECCCHHHHHH
T ss_conf 866999808887999999999782---989998298145454
No 88
>PRK07232 malic enzyme; Reviewed
Probab=87.69 E-value=1.8 Score=22.78 Aligned_cols=127 Identities=23% Similarity=0.370 Sum_probs=77.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
..||.+.|-|-||.-++.-+...|++.-+.+.|+..- - +++|.--+-++...+.|.......+.
T Consensus 186 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~G----------v------i~~~r~~~~~~~k~~~a~~t~~~~l~ 249 (753)
T PRK07232 186 DVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG----------V------IYKGRTEGMDEWKAAYAQDTDARTLA 249 (753)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCC----------C------CCCCCCCCCHHHHHHHCCCCCCCCHH
T ss_conf 7189997886888999999998499801079995778----------6------56888776249999863468988699
Q ss_pred HHHCCCCEEEEEECCC-CCCCCCH---------------------HHHHHHHHHHCCCE----------EEEEEECCCCC
Q ss_conf 9726998999980367-6667407---------------------89999999864984----------99995043000
Q gi|254781176|r 94 EMLDKTHMCFVTAGMG-GGTGTGA---------------------APIIAKIARNKGVL----------TVGVVTKPFHF 141 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~g-ggtgtg~---------------------~p~ia~~a~~~~~~----------~~~~v~~pf~~ 141 (502)
++++|+|+.+ |+- +|.=|.. .|-.|+.||.--|. +--+...||-|
T Consensus 250 ea~~gaDvfi---g~S~~~~~~~~mv~~Ma~~pivfalANP~PEI~p~~a~~~r~d~i~aTGRsD~pNQvNNvl~FP~if 326 (753)
T PRK07232 250 EAIEGADVFL---GLSAAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGRSDYPNQVNNVLCFPYIF 326 (753)
T ss_pred HHHCCCCEEE---ECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCHHHCCCHHH
T ss_conf 9957997899---7477997899999862878779856898977699999976043798348889854111111240877
Q ss_pred CCHH---------HHHH-HHHHHHHHHH
Q ss_conf 4067---------8888-9999999998
Q gi|254781176|r 142 EGSR---------RMRV-AESGIEALQE 159 (502)
Q Consensus 142 eg~~---------r~~~-a~~~~~~l~~ 159 (502)
-|-. .|+. |-.+|..|-+
T Consensus 327 RGaLdv~A~~In~~Mk~aa~~alA~la~ 354 (753)
T PRK07232 327 RGALDVGATTINEEMKIAAVRAIAELAR 354 (753)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6688617573889999999999999986
No 89
>PRK09932 glycerate kinase II; Provisional
Probab=87.62 E-value=2.2 Score=22.17 Aligned_cols=95 Identities=18% Similarity=0.390 Sum_probs=57.4
Q ss_pred HHHHHHCCCCEEEEEEC-CCCCCCCCHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99997269989999803-676667407899-99999864984999950430004067888899999999986-3335450
Q gi|254781176|r 91 EITEMLDKTHMCFVTAG-MGGGTGTGAAPI-IAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET-VDTLIVI 167 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag-~gggtgtg~~p~-ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~-~d~~i~i 167 (502)
.+.+.|+++|+||---| |-.-|=.|-+|+ ||++||.+|+-+++++-.= ..+++.|..+ .|++
T Consensus 277 ~l~~~i~~aDLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~~Pviai~G~~------------~~~~~~~~~~Gi~a~--- 341 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVL------------GDGVEVVHQYGIDAV--- 341 (381)
T ss_pred CHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC------------CCCHHHHHHCCCCEE---
T ss_conf 98988478999998998776668898859999999998499989996245------------888788986498499---
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27888741366531899974467999999888887651
Q gi|254781176|r 168 PNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMI 205 (502)
Q Consensus 168 ~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~ 205 (502)
|.+...-.++.+|++.+-+.|.++.+.|..+|.
T Consensus 342 -----fsi~~~~~sL~~a~~~a~~~L~~~a~~i~rli~ 374 (381)
T PRK09932 342 -----FSILPRLAPLAEVLASGETNLFNSARNIACAIK 374 (381)
T ss_pred -----EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----977999989999999799999999999999999
No 90
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.61 E-value=1.6 Score=23.17 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred HCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH-----
Q ss_conf 438617999966814799999998589984499982557885518997048515542556788888389999999-----
Q gi|254781176|r 12 ELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAE----- 86 (502)
Q Consensus 12 ~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~----- 86 (502)
-.+-|+.|||.||-||-+.-++-..|+- .+..++-| ..+.|+-+..|+.... -+|. .+.+.+++...
T Consensus 40 L~~a~VlvvG~GGLG~~~~~yLaaaGvG--~i~ivD~D--~v~~sNL~RQil~~~~---dvG~-~K~~~a~~~l~~~Np~ 111 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVG--TIGIVEFD--VVDESNLQRQIIHGQS---DVGR-SKAQSARDSIVEINPL 111 (392)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCC--CCCCCCCCCCCCCCHH---HCCC-CHHHHHHHHHHHHCCC
T ss_conf 9719789987875789999999982897--59998789--9674557720056843---3587-0799999999987898
Q ss_pred ---------HHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEE
Q ss_conf ---------7299999972699899998036766674-078999999986498499
Q gi|254781176|r 87 ---------ECIDEITEMLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 87 ---------~~~~~i~~~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~~ 132 (502)
-+.+...+++++.|+|+= +|-. -.--.|.+.|...++--|
T Consensus 112 v~v~~~~~~l~~~n~~~li~~~DvViD------~tDN~~tR~lindac~~~~~PlV 161 (392)
T PRK07878 112 VNVRLHEFRLEPSNAVDLFAQYDLILD------GTDNFATRYLVNDAAVLAGKPYV 161 (392)
T ss_pred CCCEEHHHCCCHHHHHHHHCCCCEEEE------CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 531211313788898764317768986------68998999999999999699879
No 91
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.48 E-value=2.1 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=13.4
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCE
Q ss_conf 79999668147999999985899844
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVN 42 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~ 42 (502)
+.+..-|.-..-+...|.+.|+..|-
T Consensus 62 vvyC~sG~RS~~Aa~~L~~~Gy~~V~ 87 (379)
T PRK08762 62 VLICQSGKRSAHAAADLRELGYRRVA 87 (379)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 99999987999999999976996608
No 92
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=87.37 E-value=2.3 Score=22.07 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=61.9
Q ss_pred CCEEEEEEECCCHHHHH---HHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86179999668147999---999985899844999825578855189970485155425567888883899999997299
Q gi|254781176|r 14 KPRITVFGVGGGGGNAV---NNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~---~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
.-||.++|+|..|.=+- .++...|.. +.|+ |...+
T Consensus 33 a~~I~~~G~G~Sg~va~~~a~rl~~lG~~-~~~~--------------------~d~~~--------------------- 70 (179)
T cd05005 33 AKRIFVYGAGRSGLVAKAFAMRLMHLGLN-VYVV--------------------GETTT--------------------- 70 (179)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCC-EEEE--------------------CCCCC---------------------
T ss_conf 99489998562587799999999735980-1243--------------------56555---------------------
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997269989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
..+..-|++|+..+=|. |--.--+++.||+.|+-+|++...|-+ .|.+++|-++.+|.+
T Consensus 71 ---~~i~~~Dv~I~iS~SG~---T~~~~~~~~~aK~~ga~iI~IT~~~~S---------------~la~~aD~~l~ip~~ 129 (179)
T cd05005 71 ---PAIGPGDLLIAISGSGE---TSSVVNAAEKAKKAGAKVVLITSNPDS---------------PLAKLADVVVVIPAA 129 (179)
T ss_pred ---CCCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEECCCCC---------------HHHHHCCEEEECCCC
T ss_conf ---77999999999819999---568999999999879919999798999---------------789958999981874
Q ss_pred H
Q ss_conf 8
Q gi|254781176|r 171 N 171 (502)
Q Consensus 171 ~ 171 (502)
+
T Consensus 130 ~ 130 (179)
T cd05005 130 T 130 (179)
T ss_pred C
T ss_conf 3
No 93
>TIGR03168 1-PFK 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=87.28 E-value=2.3 Score=22.04 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=83.2
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEE-ECCC-----HHHHHHCCCCEEEEECCCCCC---------C-----CCCCCC
Q ss_conf 9999668147999999985899844999-8255-----788551899704851554255---------6-----788888
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVV-ANTD-----AQALMMSKAKQIIQLGSGITE---------G-----LGAGSH 77 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~-~ntd-----~~~l~~~~~~~~~~~g~~~~~---------g-----~g~g~~ 77 (502)
.-...||+|.|+--.+.+.|.+ |.|+. +--| .+.|....++.....-...|+ | ...|.
T Consensus 30 ~~~~~GG~~aNvA~~larLG~~-v~~ig~vG~D~G~~i~~~L~~~gVd~~~v~~~~~t~~~~~~~~~~g~~~~~~~~g~- 107 (303)
T TIGR03168 30 VRKDAGGKGINVARVLARLGAE-VVATGFLGGFTGEFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNEPGP- 107 (303)
T ss_pred EEECCCCHHHHHHHHHHHCCCC-EEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCC-
T ss_conf 6777788899999999986998-79999950756999999997659988549966997278999917997799955886-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 38999999972999999726998999980367666740789999999864984999950430004067888899999999
Q gi|254781176|r 78 PEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEAL 157 (502)
Q Consensus 78 ~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l 157 (502)
.+.......-.+.+...+...+++++..-+-.+......--++++||+.|+.++- ...++. + ...|
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~v~~~g~l~~~~~~~~~~~~~~~a~~~g~~v~~------D~~~~~-~------~~~l 173 (303)
T TIGR03168 108 -EISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKVIL------DTSGEA-L------REAL 173 (303)
T ss_pred -CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE------ECCHHH-H------HHHH
T ss_conf -6899999999999997733499999957667889989999999999975998999------587788-9------9998
Q ss_pred HHHHHHHHHHHHHH-HHHHCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 98633354502788-8741366-53189997446799999988
Q gi|254781176|r 158 QETVDTLIVIPNQN-LFRIAND-KTTFADAFSMADQVLYSGVS 198 (502)
Q Consensus 158 ~~~~d~~i~i~n~~-l~~~~~~-~~~~~~af~~~d~~l~~~v~ 198 (502)
....| ++.||.. +..+.+. ..+..+....+..++..+++
T Consensus 174 ~~~~~--li~pN~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~ 214 (303)
T TIGR03168 174 AAKPF--LIKPNHEELEELFGRELKTEEEIIEAARELLDRGAE 214 (303)
T ss_pred HHCCC--EECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 63991--980589999998487689999999999998862776
No 94
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=87.21 E-value=2.3 Score=22.01 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=40.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
|..++|.|+-||++...+...|+..+.|+-- | ..+.|+-....+.-.+-. .+|.|. ..+|.+...+|...
T Consensus 1 kvLllGaGtLGc~var~L~~~GV~~it~VD~--~--~Vs~SN~~RQ~Lf~~~D~----~~g~~K--a~aAa~~Lk~I~P~ 70 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS--G--KVSYSNPVRQSLFTFEDC----KGGKPK--AEAAAERLKEIFPS 70 (307)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEEEEEC--C--EEECCCCCCCCCCCHHHH----CCCCCH--HHHHHHHHHHHCCC
T ss_conf 9799857752069999999836985899849--9--885566223567636665----189807--99999999986999
No 95
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.00 E-value=1.9 Score=22.65 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=46.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
+|.|||+|=-|+..--.+.+.++. +..+.++.+.+.|........| .+....+.+.
T Consensus 2 ~V~IiGlGLIGgSlalalk~~g~~-~~i~~~d~~~~~l~~A~~~g~i-----------------------d~~~~~~~~~ 57 (357)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPD-VFIIGYDPSGAQLARALGFGVI-----------------------DELAEDLARA 57 (357)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHHHCCCC-----------------------CEECCCHHHH
T ss_conf 799997787899999999854997-6999966999999999868997-----------------------7304887671
Q ss_pred HCCCCEEEEEECC
Q ss_conf 2699899998036
Q gi|254781176|r 96 LDKTHMCFVTAGM 108 (502)
Q Consensus 96 ~~~~~~~~~~ag~ 108 (502)
++++|+|||+.=.
T Consensus 58 ~~~~DlVvlatPv 70 (357)
T PRK06545 58 AAEADLIVLAVPV 70 (357)
T ss_pred CCCCCEEEECCCH
T ss_conf 5679999994999
No 96
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=86.99 E-value=2 Score=22.45 Aligned_cols=256 Identities=21% Similarity=0.291 Sum_probs=150.1
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEE------------------EEECCCHHHHHHCCC-CEEEEECCCCCCCCCCCCC
Q ss_conf 799996681479999999858998449------------------998255788551899-7048515542556788888
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNF------------------VVANTDAQALMMSKA-KQIIQLGSGITEGLGAGSH 77 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~------------------~~~ntd~~~l~~~~~-~~~~~~g~~~~~g~g~g~~ 77 (502)
|-|||=|+||-+|-....+.|+..|=. -+.-||.|......= ..-+++-..+--|.|- +|
T Consensus 2 vvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~-n~ 80 (487)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGI-ND 80 (487)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCC-CC
T ss_conf 68984276889999999864687637870575232268997721023568488854888996778899888632788-87
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEE------EEECC--------CC--CCCCCHHHHHHHHHHHCC------C------
Q ss_conf 38999999972999999726998999------98036--------76--667407899999998649------8------
Q gi|254781176|r 78 PEVGRAAAEECIDEITEMLDKTHMCF------VTAGM--------GG--GTGTGAAPIIAKIARNKG------V------ 129 (502)
Q Consensus 78 ~~~g~~~a~~~~~~i~~~~~~~~~~~------~~ag~--------gg--gtgtg~~p~ia~~a~~~~------~------ 129 (502)
|++=|.-|+++.+.+. +|+++.|.| .+-|+ -| ++|-+..-...+.||+.| +
T Consensus 81 ~~L~~~la~~s~~a~~-wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n~ 159 (487)
T TIGR01813 81 PELVRTLAEESADAVD-WLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLNS 159 (487)
T ss_pred HHHHHHHHHHHHHHHH-HHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCC
T ss_conf 8999999987889988-776422100011144327876464303478876784011777887743377432112210067
Q ss_pred -----------EEEEEEECC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCHHHHHHHHH
Q ss_conf -----------499995043---00040678888999999999863335450------2788874136653189997446
Q gi|254781176|r 130 -----------LTVGVVTKP---FHFEGSRRMRVAESGIEALQETVDTLIVI------PNQNLFRIANDKTTFADAFSMA 189 (502)
Q Consensus 130 -----------~~~~~v~~p---f~~eg~~r~~~a~~~~~~l~~~~d~~i~i------~n~~l~~~~~~~~~~~~af~~~ 189 (502)
-++||+..- |..+-+.. .+.- .-.++||+= .|..|.+.|+|. +.+-|...
T Consensus 160 ~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~------~~~~--~a~k~Vv~AtGGFgy~N~~~~~~y~P~--L~~~~~sT 229 (487)
T TIGR01813 160 KVEDLIQDDQGQVVGVVVKGDYDFKDEKKGK------KIYI--KAAKAVVLATGGFGYSNKELIKKYDPE--LKGKLDST 229 (487)
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCCCCCCC------CEEE--EEECCEEEEECCCCHHHHHHHHHHCHH--HCCCCCCC
T ss_conf 2799998697118999962122588777787------3267--550606897576133338999861801--16702346
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEE--------CCCCCHHHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 79999998888876516655558987878764158658998761--------486204899998875270100022455-
Q gi|254781176|r 190 DQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGE--------ASGHGRGIQAAEAAVANPLLDEASMKG- 260 (502)
Q Consensus 190 d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~--------~~g~~r~~~a~~~a~~~pll~~~~~~~- 260 (502)
|. +|- =.|.-.+|..-|-++..... .+..||--. -.-.+.+-+. --|
T Consensus 230 N~---------------~Ga----TGDg~~~a~~~GA~~vdm~~iQ~~Pt~~~d~gDrenn-W~~~~~~~~r----~~GF 285 (487)
T TIGR01813 230 NQ---------------PGA----TGDGIKMAEKIGAALVDMDFIQAHPTASPDEGDRENN-WGFLISEAVR----GYGF 285 (487)
T ss_pred CC---------------CCC----HHHHHHHHHHHCCCEEECCEEECCCEECCCCCCCHHH-HHHHHHHHHH----HCCC
T ss_conf 89---------------963----5799999998088745040474261442698751024-4656656675----2255
Q ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHHHHHCCCC-------CCEEEEEEECCCCCC
Q ss_conf 537899961688889--999999999999741688-------639998531346575
Q gi|254781176|r 261 SQGLLISITGGSDLT--LFEVDEAATRIREEVDSE-------ANIILGATFDEALEG 308 (502)
Q Consensus 261 a~~~l~~i~~~~~~~--l~e~~~~~~~i~~~~~~~-------a~ii~G~~~d~~~~~ 308 (502)
+++||||..-|.-+. |..=+.+.+.|..+.+.. |-+||.-.+-..+..
T Consensus 286 ~~aI~~n~~~G~RF~nEl~~Rd~~s~aI~a~~~k~~gkPDn~A~l~~~~~~~~~a~~ 342 (487)
T TIGR01813 286 AKAILINPKTGERFVNELATRDTVSDAILAQPGKSEGKPDNRAYLVFDEDVAKKAEE 342 (487)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 221773267885000346725689999983888788788855068808578766677
No 97
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.93 E-value=0.68 Score=25.94 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=28.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH
Q ss_conf 8617999966814799999998589984499982557
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA 50 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~ 50 (502)
+-++.|||+||-|+.++..|.+.|+. .+..++-|.
T Consensus 11 ~s~V~v~G~GGvGs~~a~~LarsGVG--~l~lvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCE
T ss_conf 49789988863689999999980997--599971999
No 98
>PRK08328 hypothetical protein; Provisional
Probab=86.03 E-value=1.1 Score=24.45 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=62.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH-------
Q ss_conf 3861799996681479999999858998449998255788551899704851554255678888838999999-------
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA------- 85 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a------- 85 (502)
.+-|+.|||+||-||.+.-++...|+. .+..++-|.- ..|+-+..++.-.+ -.|-.-..+..++..
T Consensus 26 ~~s~VlvvG~GGlGs~~~~~La~~GvG--~i~lvD~D~v--e~SNLnRQil~~~~---diG~~~K~~~a~~~l~~iNp~v 98 (230)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVG--TVLLIDEQTP--ELSNLNRQILHWEE---DVGKNPKPISAKWKLERFNSDI 98 (230)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCEE--ECCCCHHHHHCCHH---HHCCCCHHHHHHHHHHHHCCCE
T ss_conf 559789988787899999999984898--6898748787--51563255403087---7477103999999999759950
Q ss_pred -------HHHHHHHHHHHCCCCEEEEEECCCCCCCCC-HHHHHHHHHHHCCCEEE
Q ss_conf -------972999999726998999980367666740-78999999986498499
Q gi|254781176|r 86 -------EECIDEITEMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIARNKGVLTV 132 (502)
Q Consensus 86 -------~~~~~~i~~~~~~~~~~~~~ag~gggtgtg-~~p~ia~~a~~~~~~~~ 132 (502)
.-+.+.+.+.+++.|+|+- +|-.= +--.+.++|.+.++--|
T Consensus 99 ~i~~~~~~i~~~n~~~ll~~~DlViD------~tDn~~tr~~ln~~c~~~~iPlI 147 (230)
T PRK08328 99 KIETFVGRLTEENIDEVLKGVDVIVD------CLDNFETRYLLDDYAHKKGIPLV 147 (230)
T ss_pred EEEHHHHHHHHHHHHHHHCCCCEEEE------CCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 57526644237779862005989999------88998999999999998399779
No 99
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=85.76 E-value=2.1 Score=22.24 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=42.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
.||-+||+|-.|.....+|.+.|. +.++.|.+.......... |.. + .+.+.+
T Consensus 2 ~~Ig~IGlG~MG~~ma~~L~~~g~---~v~v~d~~~~~~~~~~~~-----g~~----------~----------~~s~~e 53 (163)
T pfam03446 2 AKIGFIGLGVMGSPMALNLLKAGY---TVTVYNRTPEKVEELVAE-----GAV----------A----------AASPAE 53 (163)
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHC-----CCE----------E----------CCCHHH
T ss_conf 889998367989999999997799---699997978877999983-----995----------5----------399999
Q ss_pred HHCCCCEEEEEE
Q ss_conf 726998999980
Q gi|254781176|r 95 MLDKTHMCFVTA 106 (502)
Q Consensus 95 ~~~~~~~~~~~a 106 (502)
+.+.+|+||++-
T Consensus 54 ~~~~~dvIi~~l 65 (163)
T pfam03446 54 AAASADVVITMV 65 (163)
T ss_pred HHHCCCEEEEEC
T ss_conf 986199999925
No 100
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=85.73 E-value=2.3 Score=22.04 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=45.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC---HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 861799996681479999999858998449998255---78855189970485155425567888883899999997299
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD---AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd---~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
..|+.|||-|+.|--++.++...|.. ++..+|-. ++.|...--...+.. .+.+
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~~--~i~v~nRt~~ka~~la~~~~~~~~~~----------------------~~~~ 67 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGAK--KITIANRTLEKAKELAEEFGGEEVEA----------------------LPLD 67 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECCCHHHHHHHHHHCCCCCEEE----------------------EECH
T ss_conf 89899999609999999999975998--89995475789999999849972589----------------------8513
Q ss_pred HHHHHHCCCCEEEEEE
Q ss_conf 9999726998999980
Q gi|254781176|r 91 EITEMLDKTHMCFVTA 106 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~a 106 (502)
++.+.+..+|+||.+.
T Consensus 68 ~l~~~l~~~DivI~aT 83 (134)
T pfam01488 68 ELEELLAEADIVISAT 83 (134)
T ss_pred HHHHHHHHCCEEEEEC
T ss_conf 5441363199999925
No 101
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=85.71 E-value=2.7 Score=21.47 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQN 171 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~ 171 (502)
.+..-|+||+..-= |-| .-..-+++.||+.|+-+|++...+.+ .|.+++|.++.++-+.
T Consensus 57 ~~~~~d~~i~iS~s-g~~--~~~~~~~~~ak~~g~~ii~IT~~~~s---------------~l~~~ad~~l~~~~~~ 115 (139)
T cd05013 57 NLTPGDVVIAISFS-GET--KETVEAAEIAKERGAKVIAITDSANS---------------PLAKLADIVLLVSSEE 115 (139)
T ss_pred CCCCCCEEEEECCC-CCC--HHHHHHHHHHHHCCCEEEEEECCCCC---------------HHHHHCCEEEECCCCC
T ss_conf 59999999997686-363--78999999999869979999799999---------------7799699999828865
No 102
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.69 E-value=2.7 Score=21.46 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 86179999668147999999985899844999825
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT 48 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt 48 (502)
+.||.|+|.|+.|..+...+.+.|. ..++.+.
T Consensus 7 ~k~vlV~GlG~sG~a~a~~L~~~G~---~V~~~D~ 38 (501)
T PRK02006 7 RPMVLVLGLGESGLAMARWCARHGC---RLRVADT 38 (501)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 9839998336889999999997898---4999989
No 103
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.52 E-value=1.9 Score=22.65 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=29.7
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 179999668147999999985899844999825578855
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALM 54 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~ 54 (502)
|+.|||+||=||.+.-++-..|+. .+..++-|.-.++
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg--~i~lvD~D~Ve~S 37 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVVEPS 37 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCCCCCC
T ss_conf 989987678899999999981897--3999989946664
No 104
>PRK10342 glycerate kinase I; Provisional
Probab=85.51 E-value=2.8 Score=21.40 Aligned_cols=98 Identities=15% Similarity=0.315 Sum_probs=63.7
Q ss_pred HHHHHHCCCCEEEEEEC-CCCCCCCCHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99997269989999803-676667407899-99999864984999950430004067888899999999986-3335450
Q gi|254781176|r 91 EITEMLDKTHMCFVTAG-MGGGTGTGAAPI-IAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET-VDTLIVI 167 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag-~gggtgtg~~p~-ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~-~d~~i~i 167 (502)
.+.+.|+++|+||--=| |-.=|=.|-+|+ ||++||..++-+++|+-.= ..+.+.|.++ .|++.
T Consensus 277 ~l~~~i~~aDLVITGEG~~D~Qsl~GK~p~~Va~~A~~~~~Pviai~G~v------------~~~~~~~~~~Gi~a~f-- 342 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSL------------TDDVGVVHQHGIDAVF-- 342 (381)
T ss_pred CHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCC------------CCCHHHHHHHCCCEEE--
T ss_conf 98988478999998997777667899879999999998099999996866------------8687889861981998--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 278887413665318999744679999998888876516655
Q gi|254781176|r 168 PNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGL 209 (502)
Q Consensus 168 ~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~ 209 (502)
.+...-.++.+|++.|.+.|..+.+-|..++. -|+
T Consensus 343 ------si~~~~~~L~~a~~~a~~~l~~~a~~iar~l~-~g~ 377 (381)
T PRK10342 343 ------SVLTSIGTLDEAFRGAYDNICRASRNIAATLA-IGM 377 (381)
T ss_pred ------ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf ------66999989999999899999999999999998-540
No 105
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.23 E-value=2.4 Score=21.94 Aligned_cols=107 Identities=12% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHH--HHHHHHH----
Q ss_conf 3861799996681479999999858998449998255788551899704851554255678888838--9999999----
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPE--VGRAAAE---- 86 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~--~g~~~a~---- 86 (502)
.+-|+.|||.||-||-++.++...|+. .+..++-|.-.+ |.-+..+++..+. .- =|.|. ..++...
T Consensus 18 ~~s~VlVvG~GGLG~~v~~~La~aGVg--~i~ivD~D~Ve~--sNL~RQ~l~~~~~-~d---iG~~Ka~~a~~~l~~lNp 89 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVST--EDLGSNFFLDAEV-SN---SGMNRAAASYEFLQELNP 89 (198)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCCCC--CCCCCCEEECCCC-CC---CCCCHHHHHHHHHHHHCC
T ss_conf 709899987788999999999974998--699995996353--3577575026541-11---687299999999997799
Q ss_pred ------------HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf ------------7299999972699899998036766674078999999986498499
Q gi|254781176|r 87 ------------ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 87 ------------~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
...+.+.+.+++.|+|+.+.-. --+--.|.++|++.++--|
T Consensus 90 ~v~i~~~~~~~~~~~~n~~~~~~~~DlVvd~~dn-----~~~r~~in~~c~~~~iPlI 142 (198)
T cd01485 90 NVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN-----YERTAKVNDVCRKHHIPFI 142 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC-----HHHHHHHHHHHHHHCCCEE
T ss_conf 9779998224457786899998489999999999-----9999999999999299889
No 106
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.05 E-value=1.9 Score=22.67 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=95.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEE-EE-CCCHHHHHHCCCC----------------EEEEECCCCCCCCCCC
Q ss_conf 8617999966814799999998589984499-98-2557885518997----------------0485155425567888
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFV-VA-NTDAQALMMSKAK----------------QIIQLGSGITEGLGAG 75 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~-~~-ntd~~~l~~~~~~----------------~~~~~g~~~~~g~g~g 75 (502)
|.||.+||.|.-|.-.+..+++.+....+.+ .. .++...|...... .-|+|..
T Consensus 4 ~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~d~Iilav--------- 74 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAM--------- 74 (245)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEEE---------
T ss_conf 99199987589999999999977999960599969999999999999719742277799985599999998---------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEECC------------CCCC
Q ss_conf 883899999997299999972699899998036766674078999999986498-499995043------------0004
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV-LTVGVVTKP------------FHFE 142 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~-~~~~~v~~p------------f~~e 142 (502)
.|.. ..+-..+|+..+.+.-+|-|.||.. +.++.+-++- ..|. -.|| +.+.
T Consensus 75 -KP~~----~~~vl~~i~~~~~~~~iISi~AGi~----------i~~l~~~l~~~~~v~-R~MPN~~~~v~~g~t~~~~~ 138 (245)
T PRK07634 75 -PPSA----HEELLAELSPLLSNQLVVTVAAGIG----------PSYLEERLPKGTPVA-WIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred -CCHH----HHHHHHHHHHHHCCCEEEEEECCCC----------HHHHHHHCCCCCEEE-EECCCHHHHHCCCCEEEECC
T ss_conf -9174----9999999877606988999817998----------999998748997289-94585748975881898538
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------------CHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 0678888999999999863335450278887413665-----------------3189997--44679999998888876
Q gi|254781176|r 143 GSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDK-----------------TTFADAF--SMADQVLYSGVSCITDL 203 (502)
Q Consensus 143 g~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~-----------------~~~~~af--~~~d~~l~~~v~~i~~~ 203 (502)
..-...-.+-+..|-+.+-.+..++-+. ++.+-.- ......| ..|-++..+.+.|-+.+
T Consensus 139 -~~~~~~~~~~v~~lf~~~G~~~~v~E~~-~d~~TalsGSGPAy~~~~~eal~~a~~~~Gl~~~~a~~lv~~~~~G~a~l 216 (245)
T PRK07634 139 -QFVNETHQETLQLLLRGIGTSQLCTEEE-VHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEATAKHLVIQMISGSASM 216 (245)
T ss_pred -CCCCHHHHHHHHHHHHCCCEEEEECCCC-CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -8799999999999986285499976412-46244436770999999999999999982999999999999999999999
Q ss_pred HHCCCCCCCCHHHHH-HHHCCCCEEE
Q ss_conf 516655558987878-7641586589
Q gi|254781176|r 204 MIKEGLINLDFADVR-SVMRNMGRAM 228 (502)
Q Consensus 204 i~~~g~in~df~d~~-~v~~~~g~a~ 228 (502)
+ ..+ -+|++++ .|.+-+|.+.
T Consensus 217 l-~~~---~~p~~l~~~V~SpgGtT~ 238 (245)
T PRK07634 217 L-EQT---QDPANLREQVTTPGGSTA 238 (245)
T ss_pred H-HCC---CCHHHHHHCCCCCCHHHH
T ss_conf 9-769---999999980779875699
No 107
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=84.96 E-value=2.9 Score=21.23 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCCCEEEE-ECCCHHHHHHC----CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5899844999-82557885518----997048515542556788888389999999729999997269989999803676
Q gi|254781176|r 36 SGLQGVNFVV-ANTDAQALMMS----KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGG 110 (502)
Q Consensus 36 ~~~~~~~~~~-~ntd~~~l~~~----~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gg 110 (502)
..+.|.+.+. ++|=.+++... ..+.-|++...+..+-| .+-...|++.-.++++++|||-=
T Consensus 22 ~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~G------------lell~~lR~~~~~~~VI~ITa~~-- 87 (239)
T PRK10430 22 AQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENG------------LDLLPVLHEAGCKSDVIVISSAA-- 87 (239)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCH------------HHHHHHHHHHCCCCEEEEEEECC--
T ss_conf 5189908999989999999999657999858997899999978------------99999999858998199997268--
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6674078999999986498499995043000406788889999999998633
Q gi|254781176|r 111 GTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVD 162 (502)
Q Consensus 111 gtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d 162 (502)
- .-.++-|-..|+ +.+..+||.|| |.+++.+...+.++..+
T Consensus 88 -----d-~~~v~~Al~~Ga--~DYLiKPf~~~---rl~~~L~~y~~~~~~l~ 128 (239)
T PRK10430 88 -----D-AATIKDSLHYGV--VDYLIKPFQAS---RFEEALTGWRQKKMALE 128 (239)
T ss_pred -----C-HHHHHHHHHCCC--HHHEECCCCHH---HHHHHHHHHHHHHHHHC
T ss_conf -----8-999999998395--03048999999---99999999999999854
No 108
>KOG1375 consensus
Probab=84.30 E-value=0.48 Score=27.05 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=91.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99980367666740789999999864---984999950430004067888899999999986333545027888741366
Q gi|254781176|r 102 CFVTAGMGGGTGTGAAPIIAKIARNK---GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIAND 178 (502)
Q Consensus 102 ~~~~ag~gggtgtg~~p~ia~~a~~~---~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~ 178 (502)
.+++-+||||||+|..-..-+--++. .++-...|+--+...+...-..|.-.+..|..++|-...|.|+-|+++...
T Consensus 78 fql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~ksd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~ 157 (369)
T KOG1375 78 FQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKSDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFR 157 (369)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 41211026655566423467788875331101343135765666232330011223554047774357661778888865
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-C-------CCCEEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 5318999744679999998888876516655558987878764-1-------5865899876148620489999887527
Q gi|254781176|r 179 KTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVM-R-------NMGRAMMGTGEASGHGRGIQAAEAAVAN 250 (502)
Q Consensus 179 ~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~-~-------~~g~a~~g~g~~~g~~r~~~a~~~a~~~ 250 (502)
.+-+. + ..+++--...||-.|-|..-+---| . -.|.+..- +.|.-.-......-|..
T Consensus 158 ~lkl~------~------~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~---s~~~~q~~a~tv~eltq 222 (369)
T KOG1375 158 TLKLK------T------PSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLT---SRGSQQYRALTVPELTQ 222 (369)
T ss_pred HHCCC------C------CCCCEEECCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCC---CCCCCCCCCCCCCCCCC
T ss_conf 21136------8------777301203654334366666421577732111035656322---36651234300243441
Q ss_pred CCCCCCCCCCCCEEEEEE---ECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 010002245553789996---16888899999999999997416
Q gi|254781176|r 251 PLLDEASMKGSQGLLISI---TGGSDLTLFEVDEAATRIREEVD 291 (502)
Q Consensus 251 pll~~~~~~~a~~~l~~i---~~~~~~~l~e~~~~~~~i~~~~~ 291 (502)
+++|-..+.-|-. .+.. .-| .+.|+++-+.-+|++-.
T Consensus 223 q~fdaknmm~a~d-yLt~a~~~rG---smkevDeqm~~vqnk~s 262 (369)
T KOG1375 223 QMFDAKNMMTACD-YLTVAAMFRG---SMKEVDEQMLNVQNKNS 262 (369)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHCC---CHHHHHHHHHHCCCCCC
T ss_conf 0126741220000-3446777534---04556777641024575
No 109
>PRK09224 threonine dehydratase; Reviewed
Probab=84.09 E-value=3.2 Score=20.97 Aligned_cols=174 Identities=23% Similarity=0.391 Sum_probs=84.1
Q ss_pred HHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH-----HHHHHHHHHHH
Q ss_conf 99997269-9899998036766674078999999986498499995043000406788889999-----99999863335
Q gi|254781176|r 91 EITEMLDK-THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESG-----IEALQETVDTL 164 (502)
Q Consensus 91 ~i~~~~~~-~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~-----~~~l~~~~d~~ 164 (502)
||.+-+.+ -|.||+..| |||.-+|.+-.+-.+. -.+-++|| -| ||.--|.++... |.....++|.+
T Consensus 161 EIleQ~~~~~D~V~vpVG-GGGLiaGia~~~K~~~--P~ikVIGV--Ep---e~a~~m~~Sl~aG~~v~l~~v~~fADG~ 232 (504)
T PRK09224 161 EILQQHPHPLDAIFVPVG-GGGLIAGVAAYIKQLR--PEIKVIGV--EP---EDSACLKAALEAGERVELPQVGLFADGV 232 (504)
T ss_pred HHHHHCCCCCCEEEEECC-CCHHHHHHHHHHHHHC--CCCEEEEE--EE---CCCHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf 999857688888999558-4378899999998639--98738999--95---6875799999769756547667435762
Q ss_pred HH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 45-02788874136653189997446799999988888765166555589878787641586589987614862048999
Q gi|254781176|r 165 IV-IPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQA 243 (502)
Q Consensus 165 i~-i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a 243 (502)
-| .+-+.-|++.... +.+-....++-+..+++-+ |.|-|.|+.-+|- =++.+
T Consensus 233 AV~~vG~~tF~i~k~~--VDdvv~V~~deIcaAikdi-------------~e~~r~I~EPaGA------------lalAg 285 (504)
T PRK09224 233 AVKRIGEETFRLCQEY--VDDVITVDTDEICAAIKDV-------------FEDTRSIAEPAGA------------LALAG 285 (504)
T ss_pred CCCCCCHHHHHHHHHC--CCCEEEECHHHHHHHHHHH-------------HHHCCEEECCHHH------------HHHHH
T ss_conf 0066767899887524--8962798878999999999-------------9836765346189------------99999
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 98875270100022455537899961688889999999999999741688639998531346575
Q gi|254781176|r 244 AEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEG 308 (502)
Q Consensus 244 ~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~ 308 (502)
+++-+. ...++|- -++.|.+|..|.++-+..+++ |.++++.-+.+++.++.|.-+.
T Consensus 286 lk~y~~-----~~~~~~~--~~v~i~sGaN~nF~rLr~v~e--ra~~Ge~re~~~~v~ipe~~Gs 341 (504)
T PRK09224 286 LKKYVA-----QHGIKGE--TLVAILSGANMNFDRLRYVAE--RAELGEQREALLAVTIPEEPGS 341 (504)
T ss_pred HHHHHH-----HCCCCCC--CEEEEECCCCCCHHHHHHHHH--HHHCCCCCEEEEEEECCCCCCH
T ss_conf 999997-----5576646--279972367667124478898--8640544248999965899977
No 110
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=83.99 E-value=1.8 Score=22.77 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=49.3
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHH--HHHHHHHHHHHH-----HHCCCCEEEEEECCCCCCCCCHHHHH---HH
Q ss_conf 551899704851554255678888838999--999972999999-----72699899998036766674078999---99
Q gi|254781176|r 53 LMMSKAKQIIQLGSGITEGLGAGSHPEVGR--AAAEECIDEITE-----MLDKTHMCFVTAGMGGGTGTGAAPII---AK 122 (502)
Q Consensus 53 l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~--~~a~~~~~~i~~-----~~~~~~~~~~~ag~gggtgtg~~p~i---a~ 122 (502)
|+.+.++--.-...+...|+=|||+..+-+ ..||.+.+.-.. -+..-|+|+=+ +-+|-+|.+ .+
T Consensus 75 lDa~E~~PTFg~~~~~v~~liAGG~~Al~~~~EgaED~~~~g~~dl~~~~~~~~DvvIgI------aASG~TPyv~~al~ 148 (273)
T PRK05441 75 LDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVGI------AASGRTPYVIGALE 148 (273)
T ss_pred HHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHHCCCCCCEEEEE------ECCCCCHHHHHHHH
T ss_conf 889864876689989914467688999863611024688899999998289965789999------36889718999999
Q ss_pred HHHHCCCEEEEEEECCC
Q ss_conf 99864984999950430
Q gi|254781176|r 123 IARNKGVLTVGVVTKPF 139 (502)
Q Consensus 123 ~a~~~~~~~~~~v~~pf 139 (502)
.||+.|++|+++..-|-
T Consensus 149 ~A~~~ga~ti~I~~n~~ 165 (273)
T PRK05441 149 YAREIGALTIAISCNPG 165 (273)
T ss_pred HHHHCCCCEEEEECCCC
T ss_conf 99986995799853896
No 111
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.30 E-value=1.8 Score=22.73 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEE
Q ss_conf 3861799996681479999999858998449998255788551899704851
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQL 64 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~ 64 (502)
.+-|+.|+|.||-||-++.++...|+.. +..++-|.-.++ .-...++.
T Consensus 20 ~~s~VlvvG~GGLG~~v~~~La~aGvg~--i~ivD~d~v~~s--nL~RQ~l~ 67 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGS--LTILDDRTVTEE--DLGAQFLI 67 (197)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHHCCCE--EEEEECCCCCHH--HCCCCEEC
T ss_conf 6095999887889999999999837986--999989918777--73978603
No 112
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.99 E-value=3.1 Score=21.09 Aligned_cols=192 Identities=14% Similarity=0.237 Sum_probs=101.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHCC----------------CCEEEEECCCCCCCCCCCC
Q ss_conf 8617999966814799999998589-9844999825578855189----------------9704851554255678888
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGL-QGVNFVVANTDAQALMMSK----------------AKQIIQLGSGITEGLGAGS 76 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~ntd~~~l~~~~----------------~~~~~~~g~~~~~g~g~g~ 76 (502)
..||.+||.|.-|.-.+..+++.+. ..-++++.+.+...+.... ...-|.|..
T Consensus 2 ~kkI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~Dii~LaV---------- 71 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSI---------- 71 (272)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEE----------
T ss_conf 9869998567999999999997889896769996979999999999719788668799973199999995----------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC------------CCCCC
Q ss_conf 8389999999729999997269989-9998036766674078999999986498499995043------------00040
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDKTHM-CFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP------------FHFEG 143 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~~~~-~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p------------f~~eg 143 (502)
.|.. ..+-.++++..+....+ |-|.||.- +.++.+.++--+=.|=+|| +.+ +
T Consensus 72 KP~~----~~~vl~~l~~~~~~~~lviSi~AGi~----------i~~l~~~l~~~~~vvR~MPN~~a~v~~g~t~i~~-~ 136 (272)
T PRK12491 72 KPDL----YSSVINQIKDQIKNDVIVVTIAAGKS----------IKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCF-N 136 (272)
T ss_pred CHHH----HHHHHHHHHHHCCCCCEEEEEECCCC----------HHHHHHHHCCCCCEEEECCCHHHHHCCCCEEEEC-C
T ss_conf 7789----99999998655269918999848999----------8999998189985799789769996369657834-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--------HHHHH-----------HHHHHHHHHHHHHHHHHH
Q ss_conf 67888899999999986333545027888741366531--------89997-----------446799999988888765
Q gi|254781176|r 144 SRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTT--------FADAF-----------SMADQVLYSGVSCITDLM 204 (502)
Q Consensus 144 ~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~--------~~~af-----------~~~d~~l~~~v~~i~~~i 204 (502)
..-...-.+-+.+|-+.+-.+.++ ++++++.+-.-.+ |.++| ..|-++..+.+.|-..++
T Consensus 137 ~~~~~~~~~~v~~lf~~~G~~~~~-~E~~~d~~TalsGSgPAy~~~~~eal~~a~v~~Gl~~~~A~~l~~~~~~G~~~ll 215 (272)
T PRK12491 137 EMVTEKDIKEVLNIFNIFGQTEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMV 215 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 989999999999997247649996-3531101457834759999999999999999849899999999999999999999
Q ss_pred HCCCCCCCCHHHHH-HHHCCCCEEEEEEEEC
Q ss_conf 16655558987878-7641586589987614
Q gi|254781176|r 205 IKEGLINLDFADVR-SVMRNMGRAMMGTGEA 234 (502)
Q Consensus 205 ~~~g~in~df~d~~-~v~~~~g~a~~g~g~~ 234 (502)
.+.+ .++.+++ .|.+-+|.+.-|.-.-
T Consensus 216 ~~~~---~~p~~L~~~V~SpgGtT~aGl~~L 243 (272)
T PRK12491 216 LETG---IHPGELKDMVCSPGGTTIEAVATL 243 (272)
T ss_pred HHCC---CCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8649---999999982789978799999999
No 113
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase; InterPro: IPR006269 These sequences describe 2-dehydro-3-deoxyphosphooctonate aldolase. Alternate names include 3-deoxy-d-manno-octulosonic acid 8-phosphate and KDO-8 phosphate synthetase. It catalyzes the aldol condensation of phosphoenolpyruvate with D-arabinose 5-phosphate. phosphoenolpyruvate + D-arabinose 5-phosphate + H_2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. ; GO: 0008676 3-deoxy-8-phosphooctulonate synthase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=82.74 E-value=0.36 Score=27.96 Aligned_cols=14 Identities=64% Similarity=0.907 Sum_probs=11.9
Q ss_pred CCCCCCCHHHCCCC
Q ss_conf 00025320220367
Q gi|254781176|r 488 EDKLEIPAFLRRQS 501 (502)
Q Consensus 488 EDdLEIPAFLRRQA 501 (502)
=|-|.|||||=||.
T Consensus 94 vDilQiPAFLCRQT 107 (279)
T TIGR01362 94 VDILQIPAFLCRQT 107 (279)
T ss_pred EEEECCCCHHHHHH
T ss_conf 00110661321146
No 114
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=82.63 E-value=1.5 Score=23.38 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=49.7
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCHHHHH--HHHHHHHHHH----HH-HHCCCCEEEEEECCCCCCCCCHHHHH---HHH
Q ss_conf 51899704851554255678888838999--9999729999----99-72699899998036766674078999---999
Q gi|254781176|r 54 MMSKAKQIIQLGSGITEGLGAGSHPEVGR--AAAEECIDEI----TE-MLDKTHMCFVTAGMGGGTGTGAAPII---AKI 123 (502)
Q Consensus 54 ~~~~~~~~~~~g~~~~~g~g~g~~~~~g~--~~a~~~~~~i----~~-~~~~~~~~~~~ag~gggtgtg~~p~i---a~~ 123 (502)
+.+.++--.-...+..+|+=|||+..+.+ ..||.+.+.= .+ .+...|+|+-+ +-+|-+|.+ .+.
T Consensus 67 Da~E~~PTFg~~~~~v~gliAGG~~al~~~~E~aED~~~~g~~dl~~~~~~~~DvVIgI------saSG~TPyv~~aL~~ 140 (257)
T cd05007 67 DASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGI------AASGRTPYVLGALRY 140 (257)
T ss_pred HHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCEEEEE------ECCCCCHHHHHHHHH
T ss_conf 89973987799989911024388999964531125668999999998089964589999------469998599999999
Q ss_pred HHHCCCEEEEEEECCCC
Q ss_conf 98649849999504300
Q gi|254781176|r 124 ARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 124 a~~~~~~~~~~v~~pf~ 140 (502)
||+.|++|+++..-|.+
T Consensus 141 A~~~ga~ti~I~~n~~s 157 (257)
T cd05007 141 ARARGALTIGIACNPGS 157 (257)
T ss_pred HHHCCCCEEEEECCCCC
T ss_conf 99869957876438863
No 115
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.45 E-value=2.4 Score=21.92 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=34.9
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEC
Q ss_conf 38617999966814799999998589984499982557885518997048515
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLG 65 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g 65 (502)
.+.|+.|||.||-||-+.-++-..|+- ....++-|.- +.|+-+..|+.+
T Consensus 40 ~~a~VlvvG~GGLG~p~~~yLaaaGvG--~i~ivD~D~V--e~sNL~RQil~~ 88 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTV--DVSNIHRQILFG 88 (370)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCC--CCCCHHHHHCCC
T ss_conf 619789988875789999999982897--4898738982--602105554269
No 116
>PRK07680 late competence protein ComER; Validated
Probab=82.35 E-value=3.3 Score=20.82 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=97.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHCCC-----------------CEEEEECCCCCCCCCCCCC
Q ss_conf 1799996681479999999858-998449998255788551899-----------------7048515542556788888
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSG-LQGVNFVVANTDAQALMMSKA-----------------KQIIQLGSGITEGLGAGSH 77 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~-~~~~~~~~~ntd~~~l~~~~~-----------------~~~~~~g~~~~~g~g~g~~ 77 (502)
||.+||.|.-|.-.+..+++.+ +..-++++.+-+...+..... ..-|.|+. .
T Consensus 2 kI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaV----------K 71 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICV----------K 71 (273)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEEC----------C
T ss_conf 899987699999999999977998945699988998999999987699088688899984099899964----------8
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE----EEEEECCCCCCCHHHHHHHHH
Q ss_conf 38999999972999999726-9989999803676667407899999998649849----999504300040678888999
Q gi|254781176|r 78 PEVGRAAAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLT----VGVVTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 78 ~~~g~~~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~----~~~v~~pf~~eg~~r~~~a~~ 152 (502)
|.. ..+-..+|...+. +.-+|-|.||..=.+=.-..| ++++|-|--++ -|+..+-|. ..-.....+
T Consensus 72 Pq~----~~~vl~~i~~~~~~~~~iISi~AGisi~~l~~~~~--~~vvR~MPN~~~~~~~G~t~~~~~---~~~~~~~~~ 142 (273)
T PRK07680 72 PLD----IYPLLKKLAPHFSDEKCLVSITSPISPEQLETLVP--CQVARIIPSITNRALSGASLVTFG---NNCSEEWQQ 142 (273)
T ss_pred HHH----HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC--CCCEEEECCCCHHHCCCEEEEEEC---CCCCHHHHH
T ss_conf 888----99999998863478848999558888999997479--981588678860214332799758---999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC----CCCCHH----HHHHH------------HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999863335450278887413----665318----99974------------4679999998888876516655558
Q gi|254781176|r 153 GIEALQETVDTLIVIPNQNLFRIA----NDKTTF----ADAFS------------MADQVLYSGVSCITDLMIKEGLINL 212 (502)
Q Consensus 153 ~~~~l~~~~d~~i~i~n~~l~~~~----~~~~~~----~~af~------------~~d~~l~~~v~~i~~~i~~~g~in~ 212 (502)
-+..|-+.+-.++.++ +.++..+ +-..-| .++|. .|-++..+.+.|-+.++... +.
T Consensus 143 ~v~~lf~~~G~~~~i~-E~~~d~~talsGSGPAy~~~~~eal~~a~v~~~Gl~~~~A~~l~~~t~~G~a~ll~~~---~~ 218 (273)
T PRK07680 143 KLLRLFKNISTPLVIE-EDITRVASDIVSCGPAFFSYLLQRFINAAVDKTNITKEEATTLVTEMVVGLGKLLEKG---LY 218 (273)
T ss_pred HHHHHHHHCCEEEEEC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC---CC
T ss_conf 9999997387799985-7887678886168489999999999999999859999999999999999999999827---98
Q ss_pred CHHHHH-HHHCCCCEEEEEEE
Q ss_conf 987878-76415865899876
Q gi|254781176|r 213 DFADVR-SVMRNMGRAMMGTG 232 (502)
Q Consensus 213 df~d~~-~v~~~~g~a~~g~g 232 (502)
+|.+++ .|.+-+|.+.-|.-
T Consensus 219 ~~~~L~~~V~SPgGtT~~gl~ 239 (273)
T PRK07680 219 TLPTLQEKVCVKGGVTGEGIR 239 (273)
T ss_pred CHHHHHHCCCCCCHHHHHHHH
T ss_conf 989999807899725999999
No 117
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=82.27 E-value=3.7 Score=20.47 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=66.5
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEE-EECCC-----HHHHHHCCCCEEEEECCCCCC--------------CCCCCC
Q ss_conf 7999966814799999998589984499-98255-----788551899704851554255--------------678888
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFV-VANTD-----AQALMMSKAKQIIQLGSGITE--------------GLGAGS 76 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~-~~ntd-----~~~l~~~~~~~~~~~g~~~~~--------------g~g~g~ 76 (502)
=.-...||+|.|+-..+-+.|.+ +.|+ ++-.| .+.|....++.....-..-|+ =...|.
T Consensus 30 ~~~~~~GG~~aNvA~~larLG~~-~~~ig~vG~D~G~~i~~~L~~~gVd~~~i~~~~~t~~~~~i~~~~g~~~~~~~~g~ 108 (289)
T cd01164 30 STRKDAGGKGINVARVLKDLGVE-VTALGFLGGFTGDFFEALLKEEGIPDDFVEVAGETRINVKIKEEDGTETEINEPGP 108 (289)
T ss_pred EEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 46877798899999999987998-89999913655999999998749972079954998368999917998899967898
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 838999999972999999726998999980367666740789999999864984999
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
+ +.......-.+.+.+.+...+++++..-+-.+.-..+..-+++.||+.|+.++-
T Consensus 109 ~--~~~~~~~~~~~~~~~~~~~~~~v~~sg~~~~~~~~~~~~~l~~~a~~~g~~v~~ 163 (289)
T cd01164 109 E--ISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARVIL 163 (289)
T ss_pred C--CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8--999999999999997504799999953578888769999999999978998999
No 118
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=82.11 E-value=3.8 Score=20.43 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 2999999726-9989999803676667407899999998649849999
Q gi|254781176|r 88 CIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 88 ~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
....++++++ |.|++|. +|.+-...+.++|++.--....+
T Consensus 45 ~~~~~~~~~~~g~~lIi~-------~g~~~~~~~~~~A~~~P~~~F~~ 85 (260)
T cd06304 45 YEPNLRQLAAQGYDLIFG-------VGFGFMDAVEKVAKEYPDVKFAI 85 (260)
T ss_pred HHHHHHHHHHCCCCEEEE-------CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999879999999-------36777799999999889987999
No 119
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=81.98 E-value=3.8 Score=20.39 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=20.0
Q ss_pred HHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999972-69989999803676667407899999998649
Q gi|254781176|r 89 IDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKG 128 (502)
Q Consensus 89 ~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~ 128 (502)
...++.+. ++.+++|. +|..-...+.++|++.-
T Consensus 47 ~~~~~~~~~~g~~lIi~-------~g~~~~~~~~~vA~~~P 80 (265)
T cd06354 47 EPNLEQLADAGYDLIVG-------VGFLLADALKEVAKQYP 80 (265)
T ss_pred HHHHHHHHHCCCCEEEE-------CCHHHHHHHHHHHHHCC
T ss_conf 99999999879999999-------17567899999999789
No 120
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.70 E-value=1.5 Score=23.30 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=58.3
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf 38617999966814799999998589984499982557885518997048515542556788888389999999------
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAE------ 86 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~------ 86 (502)
.+.|+.|||+||-||.+.-++-..|+- .+..++-|.-.++ +-+..+ +- ++-+|- -+.+..++...
T Consensus 26 ~~s~VlivG~GGLG~~~a~~La~aGVG--~i~lvD~D~Ve~S--NL~RQ~-~~---~~diG~-~Ka~~a~~~l~~iNp~v 96 (209)
T PRK08644 26 KKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVEPS--NLNRQQ-YF---ISQIGM-FKVEALKENLLRINPFV 96 (209)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCEECCC--CCCCCC-CC---HHHCCC-CHHHHHHHHHHHHCCCE
T ss_conf 629689988878899999999993898--1899889990154--110375-67---877597-56999999987448982
Q ss_pred --------HHHHHHHHHHCCCCEEEEEECCCCCCCCCHH-HHHHHHH-HHCCCEEEE
Q ss_conf --------7299999972699899998036766674078-9999999-864984999
Q gi|254781176|r 87 --------ECIDEITEMLDKTHMCFVTAGMGGGTGTGAA-PIIAKIA-RNKGVLTVG 133 (502)
Q Consensus 87 --------~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~-p~ia~~a-~~~~~~~~~ 133 (502)
-+.+.+.+++++.|+|+= +|-.-.+ ..|.+.+ +..++..|+
T Consensus 97 ~I~~~~~~l~~~n~~~l~~~~DiViD------ctDN~~tR~li~~~c~~~~~~plV~ 147 (209)
T PRK08644 97 KIEVHQVKIDEDNIEELFKDCDIVVE------AFDNAETKAMLVETVLEKKGKKVVS 147 (209)
T ss_pred EEEEEECCCCHHHHHHHHHCCCEEEE------CCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89997224898999999857999999------9999999999999999977996899
No 121
>KOG0370 consensus
Probab=81.47 E-value=4 Score=20.27 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHCCCEEEEEEECC-----------CHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 454386179999668-----------1479999999858998449998255788551
Q gi|254781176|r 10 ITELKPRITVFGVGG-----------GGGNAVNNMVSSGLQGVNFVVANTDAQALMM 55 (502)
Q Consensus 10 ~~~~~~~i~v~g~gg-----------~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~ 55 (502)
++...-|.+|+|-|| .|.-+|..|.+.++ ..|.+|........
T Consensus 373 ~~~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i---~TiLiNPNIAtvQt 426 (1435)
T KOG0370 373 PRVEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENI---FTILINPNIATVQT 426 (1435)
T ss_pred CCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCC---EEEEECCCCCCCCC
T ss_conf 4223517999815873321240355407889876553261---79997896010002
No 122
>PRK07411 hypothetical protein; Validated
Probab=80.96 E-value=3.6 Score=20.55 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH------
Q ss_conf 38617999966814799999998589984499982557885518997048515542556788888389999999------
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAE------ 86 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~------ 86 (502)
.+.|+.|||.||-||-++-++-..|+- .+..++-|.- ..|+-+..++.... -.|. .+.+.+++.-.
T Consensus 37 ~~a~VlvvG~GGLG~p~~~yLaaaGvG--~i~ivD~D~v--e~sNL~RQ~l~~~~---~vG~-~K~~~a~~~l~~lnp~~ 108 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFDIV--DSSNLQRQVIHGTS---WVGK-PKIESAKNRILEINPYC 108 (390)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCC--CCCCCCCCCCCCHH---CCCC-CHHHHHHHHHHHHCCCC
T ss_conf 749789988872379999999983897--5999748994--62347854366620---0797-18999999999868986
Q ss_pred --------HHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEE
Q ss_conf --------7299999972699899998036766674-078999999986498499
Q gi|254781176|r 87 --------ECIDEITEMLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 87 --------~~~~~i~~~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~~ 132 (502)
-+.+...+++++.|+|+= ||-. -.--.|.+.|...|+--|
T Consensus 109 ~i~~~~~~l~~~na~~li~~~DvvvD------~tDNf~tRylindac~~~~~PlV 157 (390)
T PRK07411 109 QVDLYETRLSSENALDILAPYDVVVD------GTDNFPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred CCEEHHHHCCHHHHHHHHCCCCEEEE------CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 42103432555248874228868996------78888999998999999699879
No 123
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=80.86 E-value=4.1 Score=20.12 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=44.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH-HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557-88551899704851554255678888838999999972999999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA-QALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~-~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
||.|||-|.-|.-.-..+.+.+- .|.+++-|.+. ..++......+.+-|..+.+.+=+ ...+.+
T Consensus 2 KI~IiGaG~wGtAla~~la~n~~-~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~--------------~~dl~~ 66 (159)
T pfam01210 2 KIAVLGAGSWGTALAKVLARNGH-EVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRA--------------TTDLEE 66 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEE--------------CCCHHH
T ss_conf 89999969999999999998799-899999043666778866978210478645553054--------------288999
Q ss_pred HHCCCCEEEEEE
Q ss_conf 726998999980
Q gi|254781176|r 95 MLDKTHMCFVTA 106 (502)
Q Consensus 95 ~~~~~~~~~~~a 106 (502)
+++++|++||+-
T Consensus 67 a~~~adiIiiav 78 (159)
T pfam01210 67 AIKGADIIVLAV 78 (159)
T ss_pred HHHCCCEEEEEC
T ss_conf 983798999917
No 124
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=80.85 E-value=3.8 Score=20.44 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=65.0
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHH-----------HHHHH
Q ss_conf 7999966814799999998589984499982557885518997048515542556788888389-----------99999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEV-----------GRAAA 85 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~-----------g~~~a 85 (502)
|.|+|.|.-|+-.--+|.+.|.+ |.|++-.--.+++.+.-...+-.-|.....-.-.-.+++. =....
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~-V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~ 79 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHD-VTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAYQT 79 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCCCH
T ss_conf 99996689999999999977992-89997563678877497699947983898074103865765886799997224588
Q ss_pred HHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 972999999726-99899998036766674078999999986498499995043000406788889
Q gi|254781176|r 86 EECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVA 150 (502)
Q Consensus 86 ~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a 150 (502)
.+..+.++..+. ++-+|++-=|||- ...++++--.. -+..|+++.....+++.+.+.+
T Consensus 80 ~~al~~l~~~l~~~t~iv~lqNG~g~------~e~l~~~~~~~-~v~~gv~~~ga~~~~pg~v~~~ 138 (150)
T pfam02558 80 AEALEDLAPLLGPNTVVLLLQNGLGH------EEELREAFPRE-RVLGGVTTHGAGREGPGHVHHT 138 (150)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCH------HHHHHHHCCCC-CEEEEEEEEEEEECCCEEEEEC
T ss_conf 99999988652888389994258773------99999875998-7999999833898488099988
No 125
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=80.69 E-value=4.2 Score=20.08 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC---CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7999966814799999998589984499982557885518---9970485155425567888883899999997299999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS---KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~---~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
|.|+|.|+.|.-++..+.+.+-. -+.++++-+...+.+. ....++.. ..++ + .+.+++.
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~-~~i~vad~~~~~~~~~~~~~~~~~~~~-~~~d---------------~-~~~~~l~ 62 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDV-DEITVADRSLEKAQALAAPKLGLRFIA-IAVD---------------A-DNYEALA 62 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHHHHCCCCCEEE-EEEC---------------C-CCHHHHH
T ss_conf 98989778799999999728998-869999898899898775236985389-9957---------------7-8999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9726998999980367666740789999999864984999
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
+++++.|+|.=+++ .= ..+.|++.|-+.|+.-|-
T Consensus 63 ~~~~~~diVv~~~p--~~----~~~~i~~~c~~~g~~yvd 96 (384)
T pfam03435 63 ALLKEGDLVINLAP--PF----LSLTVLKACIETGVHYVD 96 (384)
T ss_pred HHHHCCCEEEECCC--HH----HCHHHHHHHHHCCCCEEE
T ss_conf 98712899999984--34----169999999973997575
No 126
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=80.39 E-value=3.2 Score=20.94 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=48.1
Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCHHHHHH--HHHHHH----HHHHH-HHCCCCEEEEEECCCCCCCCCHHHHHH---H
Q ss_conf 5518997048515542556788888389999--999729----99999-726998999980367666740789999---9
Q gi|254781176|r 53 LMMSKAKQIIQLGSGITEGLGAGSHPEVGRA--AAEECI----DEITE-MLDKTHMCFVTAGMGGGTGTGAAPIIA---K 122 (502)
Q Consensus 53 l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~--~a~~~~----~~i~~-~~~~~~~~~~~ag~gggtgtg~~p~ia---~ 122 (502)
|+.+.++--.-...+...|+=|||+..+-+. .|+.+. ..++. .+..-|+|+ |=+.+|-+|.+. +
T Consensus 75 lDa~E~~PTfg~~~~~v~~liAGG~~Al~~~vEgaED~~~~g~~dl~~~~~~~~DvVI------giaASG~TPyv~~al~ 148 (296)
T PRK12570 75 LDASECPPTFSVSPEMVIGLIAGGPDAMLTAIEGAEDDPELGAQDLKAIGLTSDDVVV------GIAASGRTPYVIGALE 148 (296)
T ss_pred HHHHHCCCCCCCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEE------EEECCCCCHHHHHHHH
T ss_conf 9998727865899899676763889998640302666699999999980899544799------9846888514999999
Q ss_pred HHHHCCCEEEEEEECC
Q ss_conf 9986498499995043
Q gi|254781176|r 123 IARNKGVLTVGVVTKP 138 (502)
Q Consensus 123 ~a~~~~~~~~~~v~~p 138 (502)
.||+.|++|+++..-|
T Consensus 149 ~A~~~Ga~ti~i~~n~ 164 (296)
T PRK12570 149 YAKQIGATTVALSCNP 164 (296)
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 9998599679862488
No 127
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.37 E-value=4.3 Score=20.01 Aligned_cols=81 Identities=12% Similarity=0.191 Sum_probs=50.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
-||.|||+|=-|+..--.+.+.| .+.++++.+.+.+..-....-| ... ..+ + +
T Consensus 2 mkI~IiGlGLIGgSla~al~~~~---~~V~g~d~~~~~~~~A~~~g~i--d~~-------~~~--------------~-~ 54 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIERGLV--DEA-------STD--------------L-S 54 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCC--CEE-------CCC--------------H-H
T ss_conf 78999931857999999999689---9799997999999999986997--520-------278--------------7-4
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 726998999980367666740789999999864
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK 127 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~ 127 (502)
.+.++|+|||+.-+. -..+++.++++..
T Consensus 55 ~~~~aDliila~Pv~-----~~~~~~~~~~~~l 82 (280)
T PRK07417 55 LLKDCDLVILALPIG-----LLLPPSEELIPAL 82 (280)
T ss_pred HHCCCCEEEECCCHH-----HHHHHHHHHHHHC
T ss_conf 605799899879747-----7899999998647
No 128
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.35 E-value=0.78 Score=25.51 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
||.|||-|-.|+...-.+...|+ +.+..+.+...|.+......-.+..-..+|+-.+.+|+-. .+-......+.++
T Consensus 4 ~VaViGaG~mG~giA~~~a~~G~---~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~-~~ri~~~~~l~~a 79 (308)
T PRK06129 4 SIAIVGAGLIGRAWAIVFARAGH---RVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAV-LARIRATDSLADA 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHCEEECCCHHHH
T ss_conf 79997778999999999985899---3899989889999999999999999997699987659999-8350722888998
Q ss_pred HCCCCEEE
Q ss_conf 26998999
Q gi|254781176|r 96 LDKTHMCF 103 (502)
Q Consensus 96 ~~~~~~~~ 103 (502)
+.++|+|+
T Consensus 80 l~~adlVi 87 (308)
T PRK06129 80 VADADYVQ 87 (308)
T ss_pred HCCCCEEE
T ss_conf 47499999
No 129
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=80.18 E-value=3.4 Score=20.75 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=57.3
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH---HHHHHHHHHHH-----CCCCEEE-EEECCCCCCCCCHHHHHH
Q ss_conf 88551899704851554255678888838999999---97299999972-----6998999-980367666740789999
Q gi|254781176|r 51 QALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA---EECIDEITEML-----DKTHMCF-VTAGMGGGTGTGAAPIIA 121 (502)
Q Consensus 51 ~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a---~~~~~~i~~~~-----~~~~~~~-~~ag~gggtgtg~~p~ia 121 (502)
-.|+.+.||=-.-.-.++-+|+=|||.--+ ++++ |.+.+.-.+-| -.-|+|. |+ -+|-+|.++
T Consensus 72 GvLDAvECPPTy~v~~~lV~Gi~AGG~~A~-~~a~EG~ED~~~~G~~dL~~i~lt~~DvvvgIa-------ASGrTPYv~ 143 (291)
T TIGR00274 72 GVLDAVECPPTYGVSPELVVGIIAGGEEAI-LHAVEGAEDSEEAGANDLKNIRLTKNDVVVGIA-------ASGRTPYVI 143 (291)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEHHHHHHHH-HCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE-------CCCCCHHHH
T ss_conf 223564684898988210142030016886-113367442358889998732256347688881-------789757899
Q ss_pred ---HHHHHCCCEEEEEEECCCC
Q ss_conf ---9998649849999504300
Q gi|254781176|r 122 ---KIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 122 ---~~a~~~~~~~~~~v~~pf~ 140 (502)
++||.+|+.||++..-|=+
T Consensus 144 gaL~yAr~~Ga~Ti~iacnp~S 165 (291)
T TIGR00274 144 GALEYARKLGAKTIAIACNPES 165 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999707825777417742
No 130
>PRK07334 threonine dehydratase; Provisional
Probab=80.04 E-value=1 Score=24.56 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=31.4
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 9999726998999980367666740789999999864--9849999504300040678888999
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~r~~~a~~ 152 (502)
||.+.+.+.|.||+-.| |||.-+|.+-.+ |.+ .+-++||- | |+.--|..+..
T Consensus 161 Eileq~p~~D~vvvpvG-GGGLisGia~a~----K~~~P~ikViGVE--p---e~a~~m~~sl~ 214 (399)
T PRK07334 161 EMLEDAPDLDTLVVPIG-GGGLISGIATAA----KALKPDIEIIGVQ--T---ELYPSMYAALK 214 (399)
T ss_pred HHHHHCCCCCEEEEECC-CCHHHHHHHHHH----HCCCCCCEEEEEC--C---CCCHHHHHHHC
T ss_conf 99985789998999278-604799999999----6049997899976--5---87769999846
No 131
>KOG2018 consensus
Probab=79.99 E-value=2.3 Score=22.05 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=28.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 1799996681479999999858998449998255788551
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM 55 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~ 55 (502)
-+.|||.||.|+-++|.++++|++.+ ..++-|.-.|+.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi--~iVDfdqVSlsS 113 (430)
T KOG2018 76 YVVVVGAGGVGSWVANMLLRSGVQKI--RIVDFDQVSLSS 113 (430)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEE--EEECHHHCCHHH
T ss_conf 79999168522999999998268638--995310145756
No 132
>PRK03673 competence damage-inducible protein A; Provisional
Probab=79.76 E-value=4.5 Score=19.87 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=42.1
Q ss_pred EECCCHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
Q ss_conf 982557885518------99704851554255678888838999999972999999726998999980367666740789
Q gi|254781176|r 45 VANTDAQALMMS------KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAP 118 (502)
Q Consensus 45 ~~ntd~~~l~~~------~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p 118 (502)
.+||.++.|.+. .+..+..+| -+++ .=...++.+++.+|+||+|-|||-..--=-.-
T Consensus 18 i~dTNa~~la~~L~~~G~~v~~~~tVg----------D~~~-------~i~~~l~~a~~r~DlVI~tGGLGPT~DDlT~e 80 (396)
T PRK03673 18 IVDTNAAWLADFFFHQGLPLSRRNTVG----------DNLD-------ALVAILRERSQHADVLIVNGGLGPTSDDLSAL 80 (396)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEEC----------CCHH-------HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
T ss_conf 334419999999997798188999928----------9899-------99999999961499999938848998335799
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781176|r 119 IIAKIAR 125 (502)
Q Consensus 119 ~ia~~a~ 125 (502)
++|+..-
T Consensus 81 avA~~~g 87 (396)
T PRK03673 81 AAATAKG 87 (396)
T ss_pred HHHHHHC
T ss_conf 9999856
No 133
>CHL00194 ycf39 Ycf39; Provisional
Probab=79.23 E-value=4.6 Score=19.76 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred EEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1799996-681479999999858998449998255788551899704851554255678888838999999972999999
Q gi|254781176|r 16 RITVFGV-GGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 16 ~i~v~g~-gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
+|.|+|- |--|.-+|.++...|.+ |..++=|......-.. .|.++.. || ..+.+.+..
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~~-Vr~lvRnp~ka~~l~~-------~Gve~v~-----gD--------l~dpesl~~ 60 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGYQ-VKCLVRNLRKAAFLKE-------WGAELVY-----GD--------LSLPETIPP 60 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH-------CCCEEEE-----EC--------CCCHHHHHH
T ss_conf 7999899858999999999968890-8999578676323421-------5967999-----42--------788778999
Q ss_pred HHCCCCEEEEEECCCCCCCCCH-------HHHHHHHHHHCCCEEEEEEE
Q ss_conf 7269989999803676667407-------89999999864984999950
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGA-------APIIAKIARNKGVLTVGVVT 136 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~-------~p~ia~~a~~~~~~~~~~v~ 136 (502)
+|+|.|.||.+++...+..... .--+.+.||+.|+--+.+++
T Consensus 61 Al~GvdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS 109 (319)
T CHL00194 61 ALEGITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFS 109 (319)
T ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9659967999456677886208898898899999999984998899961
No 134
>PRK12862 malic enzyme; Reviewed
Probab=79.14 E-value=4.7 Score=19.74 Aligned_cols=126 Identities=20% Similarity=0.302 Sum_probs=78.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
..||.|.|-|-||.-++.-+...|++.-+.+.|+..- - +++|.--.-++...+.|.......+.
T Consensus 192 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~G----------v------i~~~r~~~~~~~k~~~a~~t~~~~l~ 255 (761)
T PRK12862 192 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG----------V------VYEGRTELMDPWKARYAQKTDARTLA 255 (761)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC----------C------CCCCCCCCCHHHHHHHHHCCCCCCHH
T ss_conf 7189997887889999999998399810179994678----------7------77887743079999996507966599
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHH--------------------HHHC-CCEEEE------------EEECCCC
Q ss_conf 972699899998036766674078999999--------------------9864-984999------------9504300
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKI--------------------ARNK-GVLTVG------------VVTKPFH 140 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~~--------------------a~~~-~~~~~~------------~v~~pf~ 140 (502)
++++|+|+.+=+. ++|.=|. -.|..+ ||+. +...|+ +...||-
T Consensus 256 ea~~gADvfig~S--~~~~~~~--e~v~~Ma~~pivfalANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNvl~FP~i 331 (761)
T PRK12862 256 EVIEGADVFLGLS--AAGVLKP--EMVKKMAPRPLILALANPTPEILPEEARAVRPDAIIATGRSDYPNQVNNVLCFPYI 331 (761)
T ss_pred HHHCCCCEEEECC--CCCCCCH--HHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCHHHCCCHH
T ss_conf 9966898899806--8999999--99985273777862589898759999987446279834888985401111124087
Q ss_pred CCCHH---------HHH-HHHHHHHHHHH
Q ss_conf 04067---------888-89999999998
Q gi|254781176|r 141 FEGSR---------RMR-VAESGIEALQE 159 (502)
Q Consensus 141 ~eg~~---------r~~-~a~~~~~~l~~ 159 (502)
|-|-. .|+ -|-.+|..|-+
T Consensus 332 FRGaLDvrA~~In~~Mk~Aa~~alA~la~ 360 (761)
T PRK12862 332 FRGALDVGATTINEEMKIAAVRAIAELAR 360 (761)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 76688607230889999999999998740
No 135
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.14 E-value=4.7 Score=19.74 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 6179999668147999999985899
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQ 39 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~ 39 (502)
-||.|+|.|..|-.+...+.+.|..
T Consensus 15 k~v~V~GlG~sG~s~a~~L~~~G~~ 39 (481)
T PRK01438 15 LRVVVAGLGVSGFPAADALHELGAS 39 (481)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCE
T ss_conf 9899995758899999999967998
No 136
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=78.96 E-value=4.7 Score=19.70 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=75.6
Q ss_pred EECCCHHHHHHHHHHCCCCCCEEEE-ECCCH------HHHHHCCCCEEEEECCCCCCCC-----CCCCCH----HHHHHH
Q ss_conf 9668147999999985899844999-82557------8855189970485155425567-----888883----899999
Q gi|254781176|r 21 GVGGGGGNAVNNMVSSGLQGVNFVV-ANTDA------QALMMSKAKQIIQLGSGITEGL-----GAGSHP----EVGRAA 84 (502)
Q Consensus 21 g~gg~g~n~~~~~~~~~~~~~~~~~-~ntd~------~~l~~~~~~~~~~~g~~~~~g~-----g~g~~~----~~g~~~ 84 (502)
--||++.|+.-.+-+.|.+ +.|+. +-.|. +.|....++...++-....-|. -.+++. ..|...
T Consensus 53 ~~GG~~~N~a~~la~LG~~-~~~ig~vG~D~~G~~~~~~l~~~GV~~~~~~~~~~~Tg~~~v~v~~~gert~~~~~ga~~ 131 (312)
T cd01168 53 IAGGSAANTIRGAAALGGS-AAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAAN 131 (312)
T ss_pred CCCCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCHH
T ss_conf 6698899999999985997-789998668706999999998748843579827999816999982788601231015011
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99729999997269989999803676667407899999998649849999504300040678888999999999863335
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
.....+-....++.++.+++..-+- -...-+.-.+++.||+.|+.+.-=..-||..+ + ..+.+.++.+++|-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~a~~~g~~v~~dl~~~~~~~---~---~~~~~~~ll~~~di- 203 (312)
T cd01168 132 ELSPDDLDWSLLAKAKYLYLEGYLL-TVPPEAILLAAEHAKENGVKIALNLSAPFIVQ---R---FKEALLELLPYVDI- 203 (312)
T ss_pred HCCHHHHHHHHHCCCCEEEECCHHH-CCCHHHHHHHHHHHHHCCCCEEECCCCHHHHH---H---HHHHHHHHHHCCCE-
T ss_conf 2481131288860043113322020-58999999999999976991774475234446---7---77789999712998-
Q ss_pred HHHHHHH
Q ss_conf 4502788
Q gi|254781176|r 165 IVIPNQN 171 (502)
Q Consensus 165 i~i~n~~ 171 (502)
+++|+.
T Consensus 204 -l~~Ne~ 209 (312)
T cd01168 204 -LFGNEE 209 (312)
T ss_pred -EECCHH
T ss_conf -813999
No 137
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.94 E-value=4.3 Score=20.02 Aligned_cols=60 Identities=27% Similarity=0.357 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCCCCCHHHHHHHHHHH---CCCEEEEEEECCC
Q ss_conf 8389999999729999997269-----------9899998036766674078999999986---4984999950430
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDK-----------THMCFVTAGMGGGTGTGAAPIIAKIARN---KGVLTVGVVTKPF 139 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~-----------~~~~~~~ag~gggtgtg~~p~ia~~a~~---~~~~~~~~v~~pf 139 (502)
+++.-+.+-.+..-+|..-+.. --.|++.. |--|+|=+..|||+|+- .|--++-...=-|
T Consensus 105 ~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~v---GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF 178 (340)
T COG0552 105 DEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFV---GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF 178 (340)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEE---ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 88999999999999984655444436552358986799999---348886371799999999978986999823347
No 138
>pfam02595 Gly_kinase Glycerate kinase family. This is family of Glycerate kinases.
Probab=78.75 E-value=4.8 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3189997446799999988888765
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLM 204 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i 204 (502)
.++.+|.+.+-+.|.++.+.|..+|
T Consensus 349 ~~l~~a~~~a~~~L~~~a~~i~r~l 373 (378)
T pfam02595 349 GPLEDALAHAATNLMRTARNVAARL 373 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999989999999999999999
No 139
>cd01357 Aspartatase Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=78.26 E-value=3.6 Score=20.59 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=66.4
Q ss_pred CCCCCCCC--CHHHHHHHHHHHC-CC----EE----EEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36766674--0789999999864-98----49----999504300----0406788889999999998633354502788
Q gi|254781176|r 107 GMGGGTGT--GAAPIIAKIARNK-GV----LT----VGVVTKPFH----FEGSRRMRVAESGIEALQETVDTLIVIPNQN 171 (502)
Q Consensus 107 g~gggtgt--g~~p~ia~~a~~~-~~----~~----~~~v~~pf~----~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~ 171 (502)
--|+||.| -+--|||..|-+. |- .. ---|-+-=+ |---.|+. +...+++|...++.++---..|
T Consensus 91 QtGsGTstNMN~NEVIan~A~~~~g~~~g~~~~vhPnDhVN~~QSsND~~PTA~~ia-~~~~~~~L~pal~~l~~~L~~K 169 (450)
T cd01357 91 QGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLA-LILLLRKLLDALAALQEAFQAK 169 (450)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 079865354408999999999995777788887695322356567764787899999-9999999999999999999999
Q ss_pred HHH-------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 874-------------1366531899974467999999888887651665555898787876415865899876148620
Q gi|254781176|r 172 LFR-------------IANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHG 238 (502)
Q Consensus 172 l~~-------------~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~ 238 (502)
--+ -+-| +||-.-|..-=.-|.+...-+.+..-+ + .++.-+|.|+ |+|-....+
T Consensus 170 a~e~~~vik~GRTHLQdA~P-iTlGq~f~~~~~~l~r~~~Rl~~~~~r----------l-~~l~lGGtAv-GTG~na~~~ 236 (450)
T cd01357 170 AREFADVLKMGRTQLQDAVP-MTLGQEFGAYATALKRDRARIYKARER----------L-REVNLGGTAI-GTGINAPPG 236 (450)
T ss_pred HHHHCCCEEECHHHCCCCEE-EEHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHCCCCCCC-CCCCCCCCH
T ss_conf 99842463105433467754-007999999999999999999999999----------8-8735776100-278789931
Q ss_pred HHHHHH---HHHHHCCCCC-CCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 489999---8875270100-0224--5553789996168888999999999999974
Q gi|254781176|r 239 RGIQAA---EAAVANPLLD-EASM--KGSQGLLISITGGSDLTLFEVDEAATRIREE 289 (502)
Q Consensus 239 r~~~a~---~~a~~~pll~-~~~~--~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~ 289 (502)
-...++ .+...-|+-. .+.+ ..++..++.+.+.-......+..+++-||-.
T Consensus 237 ~~~~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~~e~~~~L~~la~~L~KIa~Dirll 293 (450)
T cd01357 237 YIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLL 293 (450)
T ss_pred HHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999997499975688889999577299999999999999999999999997
No 140
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.87 E-value=4.1 Score=20.16 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=34.3
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEE
Q ss_conf 3861799996681479999999858998449998255788551899704851
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQL 64 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~ 64 (502)
.+-|+.|||.||-||-+.-++-..|+- .+..++-|.- +.|+-+..++.
T Consensus 27 ~~s~VlvvG~GGLG~~~~~yLa~aGvG--~i~i~D~D~v--e~sNL~RQ~l~ 74 (355)
T PRK05597 27 FDAKVSVIGAGGLGSPALLYLAGAGVG--HITIIDDDVV--DLSNLHRQVIH 74 (355)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEECCCC--CCCHHHHHHCC
T ss_conf 629689987776689999999984997--5999729992--61213377565
No 141
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=77.80 E-value=0.55 Score=26.61 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred EEEEEEECCCH-HHHHHHHHH--CCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 17999966814-799999998--589984499982557885518997048515542556788888389999999729999
Q gi|254781176|r 16 RITVFGVGGGG-GNAVNNMVS--SGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g-~n~~~~~~~--~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
||.+||=|++= ...+..++. ..+.+-+++-++.|...|..+..-.+-.+ +-.|+.-. .+.-...
T Consensus 2 KI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~-----~~~~~~~~--------v~~ttd~ 68 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYV-----EEVGADIK--------FEKTMDL 68 (425)
T ss_pred EEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHH-----HHHCCCEE--------EEEECCH
T ss_conf 7999898368789999999838433788989998899999999999999999-----96199838--------9997899
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 997269989999803676667407899999998649849999504300040678888999999999863335450-2788
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI-PNQN 171 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i-~n~~ 171 (502)
+++|+|+|.||.+.--||-- +--.=-+|+.+.|++ +- ..=|.-=+-.|...|.-+.+.+..+--+ ||=-
T Consensus 69 ~eAl~gADfVi~~irvGg~~---~r~~De~IplkyGv~--gq-----eT~G~GG~~~alRtIPv~l~ia~~i~e~cP~Aw 138 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLT---YREKDEQIPLKYGVI--GQ-----ETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAW 138 (425)
T ss_pred HHHHCCCCEEEEEEEECCHH---HHHHHHHHHHHCCCE--EE-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99856899999988756705---789998689875914--44-----377788999998429999999999998699808
Q ss_pred HHHHCCC
Q ss_conf 8741366
Q gi|254781176|r 172 LFRIAND 178 (502)
Q Consensus 172 l~~~~~~ 178 (502)
|+...+|
T Consensus 139 liNytNP 145 (425)
T cd05197 139 YLNFTNP 145 (425)
T ss_pred EEECCCH
T ss_conf 9973787
No 142
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=77.49 E-value=5.2 Score=19.40 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=111.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHCC-CCCCEEEEECCCHHHHH----HCCC------------CEEEEECCCCCCCCCCCCC
Q ss_conf 61799996681479999999858-99844999825578855----1899------------7048515542556788888
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSG-LQGVNFVVANTDAQALM----MSKA------------KQIIQLGSGITEGLGAGSH 77 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~-~~~~~~~~~ntd~~~l~----~~~~------------~~~~~~g~~~~~g~g~g~~ 77 (502)
-||.+||.|..|.-.+..+++.+ +..-+.+++|-+...+. ...+ ...|.|..+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK---------- 71 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK---------- 71 (266)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEEEC----------
T ss_conf 6589984688999999999966899802389837999999999998498556867988740898999848----------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC-CEE----------EEEEECCCCCCCHHH
Q ss_conf 389999999729999997269989999803676667407899999998649-849----------999504300040678
Q gi|254781176|r 78 PEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKG-VLT----------VGVVTKPFHFEGSRR 146 (502)
Q Consensus 78 ~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~-~~~----------~~~v~~pf~~eg~~r 146 (502)
| +.+.+-..+++...++.-+|=|.||.. ++.+-+-.+ .-+ |+--++++.+- ..=
T Consensus 72 P----q~~~~vl~~l~~~~~~~lvISiaAGv~----------~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~-~~~ 136 (266)
T COG0345 72 P----QDLEEVLSKLKPLTKDKLVISIAAGVS----------IETLERLLGGLRVVRVMPNTPALVGAGVTAISAN-ANV 136 (266)
T ss_pred H----HHHHHHHHHHHCCCCCCEEEEEECCCC----------HHHHHHHCCCCCEEEECCCHHHHHCCCCEEEECC-CCC
T ss_conf 2----768999997323568887999707997----------9999987489966996788588971752265137-658
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHHH-----------HHHHHHHHHHHHHHHHHHCC
Q ss_conf 8889999999998633354502788874136653--------1899974-----------46799999988888765166
Q gi|254781176|r 147 MRVAESGIEALQETVDTLIVIPNQNLFRIANDKT--------TFADAFS-----------MADQVLYSGVSCITDLMIKE 207 (502)
Q Consensus 147 ~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~--------~~~~af~-----------~~d~~l~~~v~~i~~~i~~~ 207 (502)
.....+-+..|-+.+-.+..|+ +++++.+-.-. -|.+||. .|-+...+.+.|-..++...
T Consensus 137 ~~~~~~~v~~l~~~~G~v~~v~-E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~ 215 (266)
T COG0345 137 SEEDKAFVEALLSAVGKVVEVE-ESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLES 215 (266)
T ss_pred CHHHHHHHHHHHHHCCCEEEEC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9889999999998259869964-677149999844868999999999999999859999999999999999999999866
Q ss_pred CCCCCCHHHHH-HHHCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 55558987878-7641586589987614862048999988752
Q gi|254781176|r 208 GLINLDFADVR-SVMRNMGRAMMGTGEASGHGRGIQAAEAAVA 249 (502)
Q Consensus 208 g~in~df~d~~-~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~ 249 (502)
+. ..+-+| .|.+-+|.++=|.-.-+ +++...++.+|+.
T Consensus 216 ~~---~p~~Lr~~VtSPGGtTiagl~~le-~~g~~~~v~~av~ 254 (266)
T COG0345 216 GE---HPAELRDQVTSPGGTTIAGLRVLE-EDGFRGAVIEAVE 254 (266)
T ss_pred CC---CHHHHHHHCCCCCCHHHHHHHHHH-HHCHHHHHHHHHH
T ss_conf 99---979999857599840899999998-8073999999999
No 143
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=77.36 E-value=5.2 Score=19.38 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=10.8
Q ss_pred EEEEEECCCHHHHHHHHHHCCC
Q ss_conf 7999966814799999998589
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGL 38 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~ 38 (502)
|-++=.|+-+-+--|.+...|+
T Consensus 2 Va~l~~G~~~D~sfn~~~~~g~ 23 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGR 23 (258)
T ss_pred EEEEEECCCCCCCHHHHHHHHH
T ss_conf 8999934999766889999999
No 144
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=77.27 E-value=5.3 Score=19.36 Aligned_cols=161 Identities=23% Similarity=0.291 Sum_probs=77.2
Q ss_pred CCHHHC----CCE--EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 884543----861--79999668147999999985899844999825578855189970485155425567888883899
Q gi|254781176|r 8 MDITEL----KPR--ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVG 81 (502)
Q Consensus 8 ~~~~~~----~~~--i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g 81 (502)
++|+++ +|| ..++|+|--|--+-=++++..--|++-|.+= |-|.. ..+.-|+ +-+||----...
T Consensus 6 ~~ieElE~kk~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~-Dgqrv---e~dDiih------rr~Ga~~GEyKv 75 (217)
T COG4015 6 MNIEELERKKKPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVF-DGQRV---EEDDIIH------RRLGAKVGEYKV 75 (217)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCC---CCHHHHH------HHHCCCCCHHHH
T ss_conf 7499985034888648998215132899999999844897279985-38554---7204589------983787342588
Q ss_pred HH--------------HHHHHHHH-HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC-CCHH
Q ss_conf 99--------------99972999-99972699899998036766674078999999986498499995043000-4067
Q gi|254781176|r 82 RA--------------AAEECIDE-ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHF-EGSR 145 (502)
Q Consensus 82 ~~--------------~a~~~~~~-i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~-eg~~ 145 (502)
.. |.-|...+ =...|.| |+|.|+- -||--+-.+-.|++.||+.|+-||+--- -|-+ |-+.
T Consensus 76 ~Fi~rl~~~~f~r~V~a~pE~it~dNlhll~g-DVvvi~I--AGGdT~PvTaaii~ya~~rG~~TisT~G-VFGigeEev 151 (217)
T COG4015 76 DFIKRLGRVHFGRRVEAFPENITKDNLHLLKG-DVVVICI--AGGDTIPVTAAIINYAKERGIKTISTNG-VFGIGEEEV 151 (217)
T ss_pred HHHHHHCCCCCCCEEECCCCCCCCCCHHHHCC-CEEEEEE--CCCCCCHHHHHHHHHHHHCCCEEEECCC-EEECCHHHE
T ss_conf 99998475787741203633256010556438-8899995--4898541079999999970964762384-553252426
Q ss_pred HHHHHHHHH---HH-HH-HHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 888899999---99-99-863335450278887413665318
Q gi|254781176|r 146 RMRVAESGI---EA-LQ-ETVDTLIVIPNQNLFRIANDKTTF 182 (502)
Q Consensus 146 r~~~a~~~~---~~-l~-~~~d~~i~i~n~~l~~~~~~~~~~ 182 (502)
|.-+++++- .. |. .-+-.-|++-..|+..-..+-+|+
T Consensus 152 ~v~~~eeA~gP~~~~lldeg~~dHilVgTgk~IRD~ePitPy 193 (217)
T COG4015 152 KVCDAEEAKGPAKFLLLDEGGPDHILVGTGKFIRDFEPITPY 193 (217)
T ss_pred EEEEHHHCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHH
T ss_conf 776302137618888774389853897157430488888815
No 145
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.84 E-value=1.1 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=28.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 17999966814799999998589984499982557885518
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
||.|||-|-.|+...-.+...| .+.+..+.+.++|.+.
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G---~~V~l~D~~~~~l~~a 42 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAFKG---FDVTIYDISEEALDAA 42 (288)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHH
T ss_conf 8999897889999999999579---9289998988999999
No 146
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=76.73 E-value=3.6 Score=20.59 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 179999668147999999985899
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQ 39 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~ 39 (502)
||.+||.|.-|.-.+..+.+.|.+
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~g~~ 24 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAAGHE 24 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 989997009999999999977996
No 147
>PRK07048 serine/threonine dehydratase; Validated
Probab=76.56 E-value=5.5 Score=19.22 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC--CEEEEE
Q ss_conf 999997269989999803676667407899999998649--849999
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKG--VLTVGV 134 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~--~~~~~~ 134 (502)
.||.+.+...|.||+..| |||+-+|. +...|+++ +-+++|
T Consensus 164 ~EI~eq~~~~D~vvvpvG-gGGl~~Gi----~~~~k~~~p~~~vigV 205 (321)
T PRK07048 164 KELFEEVGELDALFVCLG-GGGLLSGC----ALAARALSPGCKVYGV 205 (321)
T ss_pred HHHHHHCCCCCEEEECCC-CCHHHHHH----HHHHHHHCCCCEEEEE
T ss_conf 999986499988985268-61078999----9999972898779997
No 148
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.39 E-value=5.5 Score=19.19 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=106.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCC-CCCEEEEECCC-HHHHHHC----------------CCCEEEEECCCCCCCCCCC
Q ss_conf 8617999966814799999998589-98449998255-7885518----------------9970485155425567888
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGL-QGVNFVVANTD-AQALMMS----------------KAKQIIQLGSGITEGLGAG 75 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~ntd-~~~l~~~----------------~~~~~~~~g~~~~~g~g~g 75 (502)
.-||.+||.|.-|.-.+..+++.+. ...++++.+.. ...|... .....|.|+.+
T Consensus 3 mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~~~l~~~~~v~~~~~~~~~~~~~diI~LaVK-------- 74 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-------- 74 (279)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEECCHHHHHHHCCEEEEECC--------
T ss_conf 788999876899999999999787999757999789849999999997196663777999844999999527--------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHCCCE------------EEEEEECCCCCC
Q ss_conf 8838999999972999999726998-999980367666740789999999864984------------999950430004
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTH-MCFVTAGMGGGTGTGAAPIIAKIARNKGVL------------TVGVVTKPFHFE 142 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~-~~~~~ag~gggtgtg~~p~ia~~a~~~~~~------------~~~~v~~pf~~e 142 (502)
|.. ..+-..+|...+.... +|=++||.. +.++.+-++-- .++-=.+.+.+.
T Consensus 75 --P~~----~~~v~~~i~~~~~~~~~iISi~AGi~----------~~~l~~~l~~~~~ivR~MPN~~~~vg~g~t~i~~~ 138 (279)
T PRK07679 75 --PKD----VAEALTPFKEYIHNNVLIISLLAGVS----------THSIRNLLQKDVPIIRAMPNTSAAILKSATAISPS 138 (279)
T ss_pred --HHH----HHHHHHHHHHHCCCCCEEEEECCCCC----------HHHHHHHCCCCCCEEEECCCHHHHHHCCCEEECCC
T ss_conf --899----99999998754589929999747888----------99999752999857983597678850577355279
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--------HHHHH-----------HHHHHHHHHHHHHHHHH
Q ss_conf 067888899999999986333545027888741366531--------89997-----------44679999998888876
Q gi|254781176|r 143 GSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTT--------FADAF-----------SMADQVLYSGVSCITDL 203 (502)
Q Consensus 143 g~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~--------~~~af-----------~~~d~~l~~~v~~i~~~ 203 (502)
+.-...-.+-+..|-..+-++.+++.+.+ +.+-.-.+ |.++| ..|.++..+.+.|-+.+
T Consensus 139 -~~~~~~~~~~v~~lf~~~G~~~~v~E~~~-d~~TalsGSgPAf~~~~~eal~~a~~~~Gl~~~~A~~l~~~t~~G~a~l 216 (279)
T PRK07679 139 -KHATAEHIQTAKALFETIGLVSVVEEEDM-HAVTALSGSGPAYIYYVVEAMEEAAKKIGLKEDVAKSLILQTMIGAAEM 216 (279)
T ss_pred -CCCCHHHHHHHHHHHHHCCEEEEECHHHC-CCHHHEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -99999999999999961785999543330-3210001664899999999999999983999999999999999999999
Q ss_pred HHCCCCCCCCHHHHH-HHHCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 516655558987878-764158658998761486204899998875
Q gi|254781176|r 204 MIKEGLINLDFADVR-SVMRNMGRAMMGTGEASGHGRGIQAAEAAV 248 (502)
Q Consensus 204 i~~~g~in~df~d~~-~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~ 248 (502)
+...+ .++.+++ .|.+-+|.+.-|.-.-+ +++...++.+|+
T Consensus 217 l~~~~---~~p~~L~~~V~SpgGtT~~gl~~Le-~~~~~~~i~~Av 258 (279)
T PRK07679 217 LKASE---KHPSILRKEITSPGGTTEAGIEVLQ-EHKFQQALISCI 258 (279)
T ss_pred HHHCC---CCHHHHHHHCCCCCHHHHHHHHHHH-HCCHHHHHHHHH
T ss_conf 98469---9999999846899465999999999-888199999999
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.14 E-value=5.6 Score=19.15 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999986333545027888741
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPNQNLFRI 175 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n~~l~~~ 175 (502)
.-|-.-|-++---.|++|+=..|-|-++
T Consensus 90 ~~Av~HLfrVasGLdS~VlGE~qIlgQv 117 (311)
T cd05213 90 QDAVRHLFRVASGLDSMVVGETQILGQV 117 (311)
T ss_pred HHHHHHHHHHHHCCCHHHCCCHHHHHHH
T ss_conf 8999999998723400104847899999
No 150
>PRK08507 prephenate dehydrogenase; Validated
Probab=75.97 E-value=5.7 Score=19.12 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=34.8
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC
Q ss_conf 179999668147999999985899844999825578855189
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSK 57 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~ 57 (502)
||.|||+|=-|+..--.+.+.+.. ++.++++.|.+.+..-.
T Consensus 2 ~I~IiGlGLiGgSla~alk~~~~~-~~V~g~d~~~~~~~~A~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKENKLI-SCVYGYDHNEEHEKDAL 42 (275)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCC-CEEEEEECCHHHHHHHH
T ss_conf 899990087899999999950998-67999959999999999
No 151
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=75.87 E-value=5.7 Score=19.10 Aligned_cols=92 Identities=28% Similarity=0.419 Sum_probs=60.3
Q ss_pred CEEEEEEECCCHHHHH---HHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6179999668147999---9999858998449998255788551899704851554255678888838999999972999
Q gi|254781176|r 15 PRITVFGVGGGGGNAV---NNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~---~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
.||.++|+|..|.-+- .+|...|.. +.|+ |...+ |
T Consensus 31 ~~I~v~G~G~Sg~ia~~~a~rL~~~G~~-~~~~--------------------~d~~~--------~------------- 68 (179)
T TIGR03127 31 KRIFVAGAGRSGLVGKAFAMRLMHLGFN-VYVV--------------------GETTT--------P------------- 68 (179)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCE-EEEE--------------------CCCCC--------C-------------
T ss_conf 9099999554399999999999851975-7997--------------------64444--------6-------------
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999726998999980367666740789999999864984999950430004067888899999999986333545027
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPN 169 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n 169 (502)
.+..-|++|+..+-|. |.-.--+++.||+.|+-+|+|...|-+ .|.+++|.++.||-
T Consensus 69 ---~i~~~Dv~I~iS~SGe---T~e~~~~~~~aK~~ga~ii~IT~~~~S---------------~Lak~aD~~l~ip~ 125 (179)
T TIGR03127 69 ---SIKKGDLLIAISGSGE---TESLVTVAKKAKEIGATVAAITTNPES---------------TLGKLADVVVEIPA 125 (179)
T ss_pred ---CCCCCCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEECCCCC---------------HHHHHCCEEEEECC
T ss_conf ---6999999999819999---689999999999879929999798989---------------77994999999068
No 152
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=75.72 E-value=5.8 Score=19.07 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred CCCCCCE-EEEECCCHHHHH--HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 5899844-999825578855--1899704851554255678888838999999972999999726998999980367666
Q gi|254781176|r 36 SGLQGVN-FVVANTDAQALM--MSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGT 112 (502)
Q Consensus 36 ~~~~~~~-~~~~ntd~~~l~--~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggt 112 (502)
..+.|.. ...+.+=.+++. ....+.-|++...+..|-| .+-..+|++.-..++++||||-=
T Consensus 25 ~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~G------------lell~~lr~~~~~~~VI~iTA~~---- 88 (225)
T PRK10046 25 RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG------------INLLHELVQAHYPGDVVFTTAAS---- 88 (225)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCH------------HHHHHHHHHHCCCCCEEEEECCC----
T ss_conf 72899549999899999999997359999998289899979------------99999999648799889996899----
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 740789999999864984999950430004067888899999999986333
Q gi|254781176|r 113 GTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDT 163 (502)
Q Consensus 113 gtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~ 163 (502)
- .-.+.-|-..|+ +.++.+||.|| |.+.|.+-....+...++
T Consensus 89 ---d-~~~~~~Al~~Ga--~DYLvKPf~~e---rl~~~L~~y~~~~~~l~~ 130 (225)
T PRK10046 89 ---D-METVSEAVRCGV--FDYLIKPIAYE---RLGQTLTRFRQRKHMLES 130 (225)
T ss_pred ---C-HHHHHHHHHCCC--CCCEECCCCHH---HHHHHHHHHHHHHHHHCC
T ss_conf ---9-999999997499--83102899999---999999999999998635
No 153
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=74.74 E-value=0.54 Score=26.66 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=76.6
Q ss_pred EEEEEEECCCH--HHHHHHHHH-CCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 17999966814--799999998-589984499982557885518997048515542556788888389999999729999
Q gi|254781176|r 16 RITVFGVGGGG--GNAVNNMVS-SGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g--~n~~~~~~~-~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
||.+||=|+.. .+.+..+.. ..+.+.++..++.|...|..+..-.+..+ +-+|+.. ..+.--..
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~-----~~~~~~~--------~v~~ttd~ 67 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLV-----DEAGPDI--------KFEKTTDR 67 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH-----HHCCCCE--------EEEEECCH
T ss_conf 9899998544439999999960856898999997799999999999999999-----9619983--------99997899
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE-EEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997269989999803676667407899999998649849-999504300-040678888999999999863335450278
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLT-VGVVTKPFH-FEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~-~~~v~~pf~-~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
+++|+|+|.||.+.--||- -+--.=-++..+.|++- ++=-+=|=- |-+-|-.....+=.+.++++| ||=
T Consensus 68 ~eAl~gADfVi~~irvG~~---~~r~~De~Iplk~Gv~~~~~eT~G~GG~~~alRtip~~l~ia~~i~e~~------P~A 138 (183)
T pfam02056 68 KEALTDADFVINAIRVGLL---PARELDEKIPLRHGVVGTIQETVGPGGIFRGLRTIPVFFDIAKDIEELC------PDA 138 (183)
T ss_pred HHHHCCCCEEEEEEEECCC---HHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHC------CCC
T ss_conf 9996689999998640771---4888777679983965323324572288877601899999999999979------983
Q ss_pred HHHHHCCC
Q ss_conf 88741366
Q gi|254781176|r 171 NLFRIAND 178 (502)
Q Consensus 171 ~l~~~~~~ 178 (502)
-|+...||
T Consensus 139 wliNytNP 146 (183)
T pfam02056 139 WVLNYTNP 146 (183)
T ss_pred EEEECCCH
T ss_conf 89982788
No 154
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=74.65 E-value=6.1 Score=18.88 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 86179999668147999999985899844999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVV 45 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~ 45 (502)
.-||.|+|.|+-|+=.--+|.+.|.+ |.|++
T Consensus 2 mmkI~IiGaGAvG~~~a~~L~~aG~~-V~lv~ 32 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGAD-VTLIG 32 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 47799989679999999999858998-79995
No 155
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=74.45 E-value=6.2 Score=18.85 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=66.0
Q ss_pred CCEEEEEEECCCH--HHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8617999966814--79999999858998449998255788551899704851554255678888838999999972999
Q gi|254781176|r 14 KPRITVFGVGGGG--GNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 14 ~~~i~v~g~gg~g--~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
-++|-..|+||.| ++.++.|....--.+..+ ++-|- .|..-.-.+..+|-..... -.+|-...
T Consensus 27 ~~~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvf-vv~DY-~~p~~v~~~~~lIAvSYSG-------------NT~ETl~~ 91 (338)
T TIGR02128 27 YDEIVISGMGGSGIAGRILSELLLEKSFEVPVF-VVKDY-RLPAFVDGKTLLIAVSYSG-------------NTEETLSA 91 (338)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEE-EECCC-CCCCCCCCCEEEEEEECCC-------------CHHHHHHH
T ss_conf 562278725657899999999865324788888-87077-8969889851799986178-------------66899999
Q ss_pred HHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 99972-69989999803676667407899999998649849999
Q gi|254781176|r 92 ITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 92 i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
...++ ++...+.||.| =-+.++||+.|..|+-|
T Consensus 92 ~e~A~~~~~~~~aITSG----------G~L~e~A~e~g~~~i~i 125 (338)
T TIGR02128 92 VEEAKKKGAKVIAITSG----------GKLEEMAKEEGLDVIKI 125 (338)
T ss_pred HHHHHHCCCCEEEEECC----------CHHHHHCCCCCCCEEEE
T ss_conf 99998657955999448----------53886301148756882
No 156
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=74.15 E-value=6.3 Score=18.79 Aligned_cols=193 Identities=20% Similarity=0.257 Sum_probs=87.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHH-----HHCCCCEEEEECCCCC-CC---------CC-CCCC
Q ss_conf 8617999966814799999998589984499982557885-----5189970485155425-56---------78-8888
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQAL-----MMSKAKQIIQLGSGIT-EG---------LG-AGSH 77 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l-----~~~~~~~~~~~g~~~~-~g---------~g-~g~~ 77 (502)
..||.|+|.|..|.-++..+.+.| +.+++.+++.... ...........|.... .. -| ....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~ 83 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTH 83 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCCCC
T ss_conf 997999926651099999999779---86999838987653234444203722313764110013477899899999988
Q ss_pred HHHHHHHH--HHHHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC--EEEEEEECCCCCCCHH--H--
Q ss_conf 38999999--972999999726---99899998036766674078999999986498--4999950430004067--8--
Q gi|254781176|r 78 PEVGRAAA--EECIDEITEMLD---KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV--LTVGVVTKPFHFEGSR--R-- 146 (502)
Q Consensus 78 ~~~g~~~a--~~~~~~i~~~~~---~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~--~~~~~v~~pf~~eg~~--r-- 146 (502)
|.+-++.+ .+=..+|.-+.+ ...+|-| .|--|.|-| +-.|+.+.+..|. ..-|=+.+|+.-==.. +
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaI-TGTNGKTTT--Tsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d 160 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAI-TGTNGKTTT--TSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPAD 160 (448)
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEE-ECCCCHHHH--HHHHHHHHHHCCCCCEECCCCCCCHHHHHCCCCCCC
T ss_conf 89999998699377488889874489998999-799962889--999999998559983213516713787620157898
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf ------88899999999986333545027888741366531899974467999999888887651665555898787876
Q gi|254781176|r 147 ------MRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSV 220 (502)
Q Consensus 147 ------~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v 220 (502)
...-.+....++-....++-|..|-|-+. + ++. .|..+ -.-|..-.+..-.+|.|.+.++++
T Consensus 161 ~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H-~---s~e-~Y~~a-------K~~i~~~~~~~~Vin~dd~~~~~~ 228 (448)
T COG0771 161 VYVLELSSFQLETTSSLRPEIAVILNISEDHLDRH-G---SME-NYAAA-------KLRILEGQTEVAVINADDAYLKTL 228 (448)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHC-C---CHH-HHHHH-------HHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 79999245551657667855799944887786560-6---999-99999-------999983896279983772777654
Q ss_pred HCCC
Q ss_conf 4158
Q gi|254781176|r 221 MRNM 224 (502)
Q Consensus 221 ~~~~ 224 (502)
....
T Consensus 229 ~~~~ 232 (448)
T COG0771 229 ADEA 232 (448)
T ss_pred HHHC
T ss_conf 4303
No 157
>PRK01215 competence damage-inducible protein A; Provisional
Probab=73.80 E-value=6.4 Score=18.74 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=40.7
Q ss_pred EECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98255788551899704851554255678888838999999972999999726998999980367666740789999999
Q gi|254781176|r 45 VANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIA 124 (502)
Q Consensus 45 ~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a 124 (502)
.+||.++.|.+.-... |-.+.+-.=.|-|++ .=.+.++.+++.+|+||+|.|||--.--=-..+||+..
T Consensus 20 i~dtNs~~la~~L~~~----G~~v~~~~~V~D~~~-------~I~~~l~~a~~r~d~Vi~tGGLGPT~DDlT~eavA~a~ 88 (264)
T PRK01215 20 TVNTNASWIARRLTYL----GYSVRRIVVVPDDEE-------EIVEAFREAIGRADVVVSTGGLGPTYDDMTNEGFAKAL 88 (264)
T ss_pred EECHHHHHHHHHHHHC----CCCEEEEEEECCCHH-------HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 0516799999999977----993889999289899-------99999999974389999948957998567999999984
No 158
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=73.74 E-value=6.4 Score=18.73 Aligned_cols=147 Identities=23% Similarity=0.302 Sum_probs=82.6
Q ss_pred EEEEEEECCCHHHHHHHHHHC-CC--CCCE----------------EEEEC-CCHHHHHH--CCCCEEEEECC-CCCCCC
Q ss_conf 179999668147999999985-89--9844----------------99982-55788551--89970485155-425567
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSS-GL--QGVN----------------FVVAN-TDAQALMM--SKAKQIIQLGS-GITEGL 72 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~-~~--~~~~----------------~~~~n-td~~~l~~--~~~~~~~~~g~-~~~~g~ 72 (502)
+|.-|||||+|...+-.+... |. +|.+ -|.++ =++++|.. ..+...| +.. ..-+
T Consensus 1 ~iHFvGIGG~GMSglA~~L~~~G~~VsGSD~~~~~y~t~~L~~~Gi~I~~g~h~~~n~~~~p~g~~~vV-v~S~~Ai~-- 77 (491)
T TIGR01082 1 KIHFVGIGGIGMSGLAEILLNRGYKVSGSDIAENAYTTKRLEALGIKIYIGEHSAENLDDLPTGAADVV-VVSAAAIK-- 77 (491)
T ss_pred CEEEEECCHHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEECCCCCCHHHHCCCCCCCCCEE-EEEEECCC--
T ss_conf 957896062034489999985789087720335631589998678766279967798203678974379-98640337--
Q ss_pred CCCCCHHHHHHHHH----HHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHCCC---EEEEEEECCCC---C
Q ss_conf 88888389999999----72999999726998-99998036766674078999999986498---49999504300---0
Q gi|254781176|r 73 GAGSHPEVGRAAAE----ECIDEITEMLDKTH-MCFVTAGMGGGTGTGAAPIIAKIARNKGV---LTVGVVTKPFH---F 141 (502)
Q Consensus 73 g~g~~~~~g~~~a~----~~~~~i~~~~~~~~-~~~~~ag~gggtgtg~~p~ia~~a~~~~~---~~~~~v~~pf~---~ 141 (502)
-.+||+-++-.. ..+.+....|--.. --|=+||-=|.|=|-| -||.+.+++|- ..||=-..-|. .
T Consensus 78 --~~NpEi~~A~~~~IPv~~R~~~Lael~~~~k~~iaVaGtHGKTTTTa--mia~~~~~aGLdPt~~~GG~~~~~~~Na~ 153 (491)
T TIGR01082 78 --EDNPEIVEAKERGIPVIRRAEMLAELMRKRKESIAVAGTHGKTTTTA--MIAVILKEAGLDPTVIVGGEVKEAGTNAR 153 (491)
T ss_pred --CCCHHHHHHHHCCCCEECHHHHHHHHHHHHCCEEEEECCCCCHHHHH--HHHHHHHHCCCCCCEEECCCCCCCCCCEE
T ss_conf --88888999996488813378999999862087079983687256899--99999984499976898664366577435
Q ss_pred CCH-HHHHHH--HHHH--HHHHHHHHHHHHHHH
Q ss_conf 406-788889--9999--999986333545027
Q gi|254781176|r 142 EGS-RRMRVA--ESGI--EALQETVDTLIVIPN 169 (502)
Q Consensus 142 eg~-~r~~~a--~~~~--~~l~~~~d~~i~i~n 169 (502)
+|. -+.-.| .|.= .-+.++-=.+.||.|
T Consensus 154 ~g~~~~~lvaEaDESd~~~sFl~~~P~~ai~TN 186 (491)
T TIGR01082 154 LGSSGEYLVAEADESDRSASFLHLQPEVAIVTN 186 (491)
T ss_pred ECCCCCEEEEEEEECCCCCCHHCCCCCEEEECC
T ss_conf 714686799998723776401206985799747
No 159
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=73.17 E-value=6.6 Score=18.63 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=58.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
+.||.|-|+|+ |-..+..+.+.++ +...|++|.|..+.....|+...++- ..+ + ....+.|.
T Consensus 1 m~nILvt~~G~-~~~ii~~lk~~~~-~~~Vi~~D~~~~a~~~~~aD~~y~~P-~~~-------d--------~~y~~~ll 62 (325)
T PRK12767 1 MMNILVTSAGR-RVQLVKALKKSLL-GGKVIGADISPLAPALYFADKFYVVP-KVT-------D--------PNYIDALL 62 (325)
T ss_pred CCEEEEECCCC-HHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHCCEEEECC-CCC-------C--------HHHHHHHH
T ss_conf 94899986786-8999999997699-85999968998995344548899878-889-------8--------78999999
Q ss_pred HHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9726--9989999803676667407899999998649
Q gi|254781176|r 94 EMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKG 128 (502)
Q Consensus 94 ~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~ 128 (502)
+.++ +.|+||-+ -..-.+++|+.+.++.
T Consensus 63 ~i~~~~~id~iiP~-------~d~El~~la~~~~~l~ 92 (325)
T PRK12767 63 DICKKENIDALIPL-------IDPELPLLAQHRDEFK 92 (325)
T ss_pred HHHHHHCCCEEEEC-------CCHHHHHHHHHHHHHH
T ss_conf 99998799999977-------8502668999999999
No 160
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=72.77 E-value=6.7 Score=18.57 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=53.8
Q ss_pred ECCCHHHHHHHHHHCCCCCCEEEEECCC-HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6681479999999858998449998255-788551899704851554255678888838999999972999999726998
Q gi|254781176|r 22 VGGGGGNAVNNMVSSGLQGVNFVVANTD-AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTH 100 (502)
Q Consensus 22 ~gg~g~n~~~~~~~~~~~~~~~~~~ntd-~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~ 100 (502)
+-|||.-.+-+++..-+.. +.|.+|.= --..-....+..-.=..-+.--+|.++-.-.|-++|. +.+ +-|
T Consensus 19 C~GCG~~~~lr~~~~a~g~-~~vi~~~tGCssv~~~~~p~~~~~~~~ihs~f~~aaa~a~Gi~~a~-------k~~-~~~ 89 (298)
T PRK11865 19 CAGCGAAIALRLALKALGK-NTVVAVATGCLEVITTPYPETAWNVPWIHVAFENAAAVASGIERAV-------KAL-GKK 89 (298)
T ss_pred CCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHH-------HHH-CCC
T ss_conf 9898639999999997087-8799979884775487677776568621003203367899999999-------984-578
Q ss_pred -EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHH
Q ss_conf -999980367666740789999999864984999950430004067
Q gi|254781176|r 101 -MCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSR 145 (502)
Q Consensus 101 -~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~ 145 (502)
-|++.+|=|++-.=|..-.+.-++|..+++.|.+=+-=+.--|-.
T Consensus 90 ~~Vv~~~GDG~~~dIG~~~l~ha~~Rn~~i~~iv~DNe~Y~nTGgQ 135 (298)
T PRK11865 90 VNVVAFGGDGGTADIGFQALSGAMERGHNIVYIMYDNEAYMNTGIQ 135 (298)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCC
T ss_conf 0799995685265421788999998299859999847121036886
No 161
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=72.61 E-value=6.8 Score=18.54 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=95.0
Q ss_pred EEECCCHHHHHHHHHHCCCCCCEEEEECCCHH----HHHHC--CCCEEEEECCCCCCCCCCC------------CCH--H
Q ss_conf 99668147999999985899844999825578----85518--9970485155425567888------------883--8
Q gi|254781176|r 20 FGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQ----ALMMS--KAKQIIQLGSGITEGLGAG------------SHP--E 79 (502)
Q Consensus 20 ~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~----~l~~~--~~~~~~~~g~~~~~g~g~g------------~~~--~ 79 (502)
+|.--+=|.+|-..++.|+-..--+-+|...- .|.+. ..+.=++| .+|.|.-.. |.. .
T Consensus 11 fGl~~~vn~gI~~~~~~GivtstS~Mvn~p~~~~A~~l~k~~p~l~vGlHl--tLt~g~P~~~~~~ipsLvd~~G~f~~~ 88 (283)
T TIGR03473 11 FGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPGLGVGLHL--VLVDGRPVLPPDQIPDLVDGQGRFGDD 88 (283)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE--EECCCCCCCCHHHCCCCCCCCCCCCHH
T ss_conf 788877899999999879846766536891499999999748999879878--705898899944487677989970552
Q ss_pred HH-------------HHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC------
Q ss_conf 99-------------9999972999999726-998999980367666740789999999864984999950430------
Q gi|254781176|r 80 VG-------------RAAAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF------ 139 (502)
Q Consensus 80 ~g-------------~~~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf------ 139 (502)
.. .+...|-+-+|...++ |-..-+|-.-+.-..--+..+++.++|++.|+-.+-+..-|.
T Consensus 89 ~~~~~~~~~~~~~~~~ei~~E~~AQie~f~~~G~~ptHiD~H~hvh~~P~v~~~~~~la~ey~ip~~r~p~e~~~~~~~~ 168 (283)
T TIGR03473 89 MVRDGVRYFFLPAVRAQLAREIRAQFEAFAATGLPLDHVNAHKHFHLHPTVLSLILEIGREYGLRAVRLPREPRALLTLE 168 (283)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHCCC
T ss_conf 89988887503235999999999999999980999753043320124826999999999982998364356653100136
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf --00406788889999999998633354502788874136653189997446799999988888765166555589
Q gi|254781176|r 140 --HFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLD 213 (502)
Q Consensus 140 --~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~d 213 (502)
..-+..-......-...++...+..=+..||.++-++.....-.+.| -.+|.+.-.|++++|..||+.+-+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~d~~~g~~~~~~~~~~~l---~~~l~~l~~g~~eim~HPg~~d~~ 241 (283)
T TIGR03473 169 PVRRLGTLWDAFLFPWLGRMRARLDRAGIAHNDYVFGLADTGHMDEARL---LAALERLPEGVSEIYFHPATAQDA 241 (283)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHH---HHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 4112304666667777888899999749985710124134354699999---999973799877999789999716
No 162
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=72.41 E-value=3.8 Score=20.44 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC---CEEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHH-----HHHHHHH-
Q ss_conf 3676667407899999998649---84999950430004067888899999--99998633354502-----7888741-
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKG---VLTVGVVTKPFHFEGSRRMRVAESGI--EALQETVDTLIVIP-----NQNLFRI- 175 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~---~~~~~~v~~pf~~eg~~r~~~a~~~~--~~l~~~~d~~i~i~-----n~~l~~~- 175 (502)
=.||||| -+++.+-.|..+ .-.-||||.==+==..-|.|.....+ =.||.+.-+|.--| -.+||+.
T Consensus 3 aiGGGTG---Ls~~L~gLk~~~~ri~~iTAIVTVADdGGSsGrLR~~~~~~pPGD~RNcl~ALs~~ePhG~~~~~LfqYR 79 (331)
T TIGR01826 3 AIGGGTG---LSVLLRGLKKLDSRISNITAIVTVADDGGSSGRLRKELDVPPPGDIRNCLAALSDSEPHGSLLSKLFQYR 79 (331)
T ss_pred EEECCCC---HHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 8824734---4789988753289414776899994278871788874879898548999998327988616899998741
Q ss_pred CCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHH---CCCCE
Q ss_conf 3665318---------9997446799999988888765166555---58987878764---15865
Q gi|254781176|r 176 ANDKTTF---------ADAFSMADQVLYSGVSCITDLMIKEGLI---NLDFADVRSVM---RNMGR 226 (502)
Q Consensus 176 ~~~~~~~---------~~af~~~d~~l~~~v~~i~~~i~~~g~i---n~df~d~~~v~---~~~g~ 226 (502)
.+....| .-|...-..=...||+-|..++...|-| --+-.++.+.| .+ |.
T Consensus 80 F~~~~~L~GH~lGNL~LaAL~~~~~~~~~Ai~~l~~~L~v~G~vlP~~~~~v~L~A~~Gle~D-G~ 144 (331)
T TIGR01826 80 FGGGGELSGHSLGNLILAALSEITGSFLEAINLLSKILKVKGRVLPMTEHPVQLVAEFGLEED-GR 144 (331)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCC-CC
T ss_conf 477885457526899998742216788999999998735655254068875431143050449-94
No 163
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=72.13 E-value=7 Score=18.46 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCEEEEEEECCCHHHHH---HHHH---HCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86179999668147999---9999---85899844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAV---NNMV---SSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~---~~~~---~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|=||....+- ..|. +..-.+..-|+++||.-.|....-+..- ..=
T Consensus 41 g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~lpai~L~~d~s~lTai~ND~~~----------------------~~v 98 (196)
T PRK10886 41 GNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLH----------------------DEV 98 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHCCCCH----------------------HHH
T ss_conf 9979998684748899999999964655689884056632670565431166779----------------------999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++.+-+.-|++|....-|.-. -----++.||++|+.||++... .|. -+..|...+|-.|.+
T Consensus 99 F~rQl~alg~~gDiLi~iStSGnS~---Nii~Ai~~A~~~g~~~i~ltG~----~gg--------~l~~l~~~~Di~I~v 163 (196)
T PRK10886 99 YAKQVRALGHAGDVLLAISTRGNSR---DIVKAVEAAVTRDMTIVALTGY----DGG--------ELAGLLGPQDVEIRI 163 (196)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCH---HHHHHHHHHHHCCCEEEEEECC----CCH--------HHHHHCCCCCEEEEC
T ss_conf 9999998567999899994899998---9999999999889989999768----862--------366515767989986
Q ss_pred HHHHH
Q ss_conf 27888
Q gi|254781176|r 168 PNQNL 172 (502)
Q Consensus 168 ~n~~l 172 (502)
|-++-
T Consensus 164 ps~~t 168 (196)
T PRK10886 164 PSHRS 168 (196)
T ss_pred CCCCC
T ss_conf 99981
No 164
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=72.06 E-value=7 Score=18.45 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=56.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEE-ECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6179999668147999999985899844999-825578855189970485155425567888883899999997299999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVV-ANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~-~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
.||-|||.|..|..-+..+.. ...++++++ ++.|...+....... |... ...+.
T Consensus 1 iki~iiG~G~~g~~~~~~~~~-~~~~~~i~ai~d~~~~~~~~~~~~~----~~~~--------------------~~~~~ 55 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNE-SQDGAELVGVLDPDPARAEAVAESF----GVPA--------------------YSDLE 55 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHH----CCCE--------------------ECCHH
T ss_conf 989999077999999999985-5999789999829999999999983----9967--------------------88699
Q ss_pred HHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 9726--99899998036766674078999999986498499995043000
Q gi|254781176|r 94 EMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHF 141 (502)
Q Consensus 94 ~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~ 141 (502)
++++ +.|+|+|+ |-+..-.-++..+-+.|.-+ ++-+|+..
T Consensus 56 ~~l~~~~iD~v~I~------tp~~~H~~~~~~~l~~g~~v--~~EKP~~~ 97 (120)
T pfam01408 56 ELLADPDVDAVSVA------TPPGLHFELALAALEAGKHV--LVEKPLAT 97 (120)
T ss_pred HHHHCCCCCEEEEC------CCHHHHHHHHHHHHHHCCEE--EEECCCCC
T ss_conf 99737788989990------87461899999999819989--99689819
No 165
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.04 E-value=7 Score=18.45 Aligned_cols=64 Identities=19% Similarity=0.347 Sum_probs=33.5
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCHHHHHHHHHHH
Q ss_conf 48515542556788888389999999729999997269989999803676667---4078999999986
Q gi|254781176|r 61 IIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTG---TGAAPIIAKIARN 126 (502)
Q Consensus 61 ~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtg---tg~~p~ia~~a~~ 126 (502)
-+.+|.++|.|.|+.-+..-+.-+... ..+.....+.++-|+=+|.+|-|= +-.....+++-++
T Consensus 2 iv~~GDSiT~G~g~~~~~~~~~~~~la--~~L~~~~~~~~~~viN~GIsGnt~~~~~~g~~~l~R~~~D 68 (204)
T cd01830 2 VVALGDSITDGRGSTPDANNRWPDLLA--ARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRD 68 (204)
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHH--HHHHHCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 899936222688989898885199999--9998306789841675465586130467763688988899
No 166
>KOG2337 consensus
Probab=71.35 E-value=7.2 Score=18.34 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=16.4
Q ss_pred CCEEEEEEE-CCCCCCHHHHHHHH---HHHHHHCCCCCCEEEEE
Q ss_conf 537899961-68888999999999---99997416886399985
Q gi|254781176|r 261 SQGLLISIT-GGSDLTLFEVDEAA---TRIREEVDSEANIILGA 300 (502)
Q Consensus 261 a~~~l~~i~-~~~~~~l~e~~~~~---~~i~~~~~~~a~ii~G~ 300 (502)
|.|+-+.|- -|.-+.-.++.+.. ..+.+.+ .+-++||=.
T Consensus 415 atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI-~~HDviFLL 457 (669)
T KOG2337 415 ATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLI-KDHDVIFLL 457 (669)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCEEEEE
T ss_conf 3203796347998264333788988999999987-645669997
No 167
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.04 E-value=2.3 Score=22.07 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=45.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
||.|||-|-.|+...-.+...| .+.+..+++.++|.+......-.+.+-+.+|.=...+++-... -......+ +.
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G---~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~dl-~~ 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALA-RITGTTDL-DD 79 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HCCCCCCH-HH
T ss_conf 8999897889999999999579---9389997998999999999999999999708864266999995-26366888-89
Q ss_pred HCCCCEEE
Q ss_conf 26998999
Q gi|254781176|r 96 LDKTHMCF 103 (502)
Q Consensus 96 ~~~~~~~~ 103 (502)
+.++|+|+
T Consensus 80 ~~~aDlVi 87 (282)
T PRK05808 80 LKDADLVI 87 (282)
T ss_pred HCCCCEEE
T ss_conf 67599999
No 168
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=71.01 E-value=7.3 Score=18.29 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=67.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-----------HHHHHHHHCCCCEEEEEEC-CCCCCCCCHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 5678888838999999972-----------9999997269989999803-676667407899-99999864984999950
Q gi|254781176|r 70 EGLGAGSHPEVGRAAAEEC-----------IDEITEMLDKTHMCFVTAG-MGGGTGTGAAPI-IAKIARNKGVLTVGVVT 136 (502)
Q Consensus 70 ~g~g~g~~~~~g~~~a~~~-----------~~~i~~~~~~~~~~~~~ag-~gggtgtg~~p~-ia~~a~~~~~~~~~~v~ 136 (502)
.|-||+|----|-.+..+. .-.+.+.++++|+||-=-| |-.-|=.|-+|+ ||++||..++-+++++-
T Consensus 245 pGaGAAGGmga~L~~~~~a~l~~Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaG 324 (378)
T COG1929 245 PGAGAAGGMGAGLLAFLQAELKSGIEIVLEATNLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAG 324 (378)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 88742014799999986375456379999874799761669889967876521013786116999751661898899923
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43-00040678888999999999863335450278887413665318999744679999998888876516
Q gi|254781176|r 137 KP-FHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIK 206 (502)
Q Consensus 137 ~p-f~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~ 206 (502)
.= -.++ .....|+ +..|.+...-.++.++|+.+..-|....+-|.-++..
T Consensus 325 s~~~~~~-----~v~~~GI---------------~AvFsi~~~~~~Le~alk~~~~nl~~~a~nia~~~~~ 375 (378)
T COG1929 325 SLGEDYE-----VVHQEGI---------------DAVFSILERIGSLEEALKNAAENLERTARNIAALLKL 375 (378)
T ss_pred CCCCCCC-----HHHHCCC---------------HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3346853-----6666481---------------4566414677789999973798999999999999860
No 169
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.80 E-value=7.4 Score=18.26 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCE-----EEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970-----4851554255678888838999999972
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQ-----IIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~-----~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
+.||.|+|.||-|.-+.-.+...+. -+...++.....+.+..... -+++. -..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD--------------------~~d 58 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAELIGGKVEALQVD--------------------AAD 58 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHCCCCCEEEEEC--------------------CCC
T ss_conf 9728998986667999999985789--629998488889999875334663169942--------------------567
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 999999726998999980367666740789999999864984
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~ 130 (502)
.+.+.++|++.|+|+-++.-= -..-|.+.|-+.|+-
T Consensus 59 ~~al~~li~~~d~VIn~~p~~------~~~~i~ka~i~~gv~ 94 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPF------VDLTILKACIKTGVD 94 (389)
T ss_pred HHHHHHHHHCCCEEEEECCCH------HHHHHHHHHHHHCCC
T ss_conf 588999872577899928705------429999999985998
No 170
>pfam06908 DUF1273 Protein of unknown function (DUF1273). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=70.48 E-value=7.5 Score=18.21 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=57.5
Q ss_pred HHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999726-99899998036766674078999999986498499995043000406788889999999998633354502
Q gi|254781176|r 90 DEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIP 168 (502)
Q Consensus 90 ~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~ 168 (502)
.+|..+|+ |.+ .+..|+-=|.-.=|+-|+.++-++..-|.+++++ ||.--|.+=...-++-+..+.+.||-+..+.
T Consensus 33 ~~l~~lleeG~e--w~i~gg~lGve~WaaEvvl~LK~~Yp~ikl~~i~-PF~~q~~~Wne~nq~~y~~i~~~aDfv~~vs 109 (177)
T pfam06908 33 KRLIELLEEGLE--WFITGGQLGFEQWAAEVVLELKKEYPELKLAVIT-PFEEQGENWNEANQEKYATILAQADFVKSVS 109 (177)
T ss_pred HHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 999999977987--9997684469999999999998668882799996-5501013899889999999998599688515
Q ss_pred HH
Q ss_conf 78
Q gi|254781176|r 169 NQ 170 (502)
Q Consensus 169 n~ 170 (502)
.+
T Consensus 110 ~~ 111 (177)
T pfam06908 110 KR 111 (177)
T ss_pred CC
T ss_conf 68
No 171
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=70.44 E-value=7.5 Score=18.20 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=32.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCC---CCEEEEECCCH---HHHHHCCCCEEEEECC
Q ss_conf 179999668147999999985899---84499982557---8855189970485155
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQ---GVNFVVANTDA---QALMMSKAKQIIQLGS 66 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~---~~~~~~~ntd~---~~l~~~~~~~~~~~g~ 66 (502)
||.|||.||-||-.+-.+...|+. +-....++-|. -+|+|.---.+=.+|+
T Consensus 1 kvlvVGAGgIGCEllKnlal~G~~~~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk 57 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGK 57 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHCCC
T ss_conf 989993776418999999983878689880899708847335753442756444897
No 172
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=70.23 E-value=5.8 Score=19.04 Aligned_cols=47 Identities=21% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCCH-HHC-CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 57884-543-86179999668147999999985899844999825578855
Q gi|254781176|r 6 ANMDI-TEL-KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALM 54 (502)
Q Consensus 6 ~~~~~-~~~-~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~ 54 (502)
.+++= |.| .-|+.++|.||-||-+--++-..|+- +++.++-|.-.|+
T Consensus 14 ~DfdGQE~LK~s~vLivG~GGLGCAa~QYLa~AGvG--~l~L~DfD~V~lS 62 (240)
T TIGR02355 14 VDFDGQEKLKASKVLIVGLGGLGCAASQYLAAAGVG--RLTLVDFDTVSLS 62 (240)
T ss_pred CCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCC--EEEEEECCEEHHH
T ss_conf 470146565005677783670345678888643663--2788633710011
No 173
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.19 E-value=7.6 Score=18.17 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=104.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCC-----------------EEEEECCCCCCCCCCCCCH
Q ss_conf 17999966814799999998589984499982557885518997-----------------0485155425567888883
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK-----------------QIIQLGSGITEGLGAGSHP 78 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~-----------------~~~~~g~~~~~g~g~g~~~ 78 (502)
||-+||.|.-|.-.+..|...+...-+.+..+-+...+...... .-|.|.. .|
T Consensus 2 kIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaV----------KP 71 (255)
T PRK06476 2 RIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRIAKDNQAVVDRSDVVFLAV----------RP 71 (255)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEEE----------CH
T ss_conf 89998646999999999997889925088989898999999987695598578899985188788861----------78
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC--C--CCHHHHHHHHHHH
Q ss_conf 89999999729999997269989999803676667407899999998649849999504300--0--4067888899999
Q gi|254781176|r 79 EVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFH--F--EGSRRMRVAESGI 154 (502)
Q Consensus 79 ~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~--~--eg~~r~~~a~~~~ 154 (502)
.. +++-..+++ .-.+.-+|=|.||.. +.++.+-++.-+-.|-+||-. - +|-.-.-...+-+
T Consensus 72 ~~----~~~vl~~l~-~~~~~~vISi~AGi~----------i~~l~~~l~~~~~vvR~MPN~~~~~g~g~t~i~~~~~~v 136 (255)
T PRK06476 72 QI----AEEVLRALR-FRPGQTVISVIAATT----------RAALLKWIGADVKLVRAIPLPFVAERKGVTAIYPPDPFV 136 (255)
T ss_pred HH----HHHHHHHHH-CCCCCEEEEECCCCC----------HHHHHHHHCCCCCEEEECCCCHHHHCCCCEEECCCHHHH
T ss_conf 88----998877620-578978999737877----------999997618998648855870888468862214867999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCHH----HHHH-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99998633354502788874136---65318----9997-----------446799999988888765166555589878
Q gi|254781176|r 155 EALQETVDTLIVIPNQNLFRIAN---DKTTF----ADAF-----------SMADQVLYSGVSCITDLMIKEGLINLDFAD 216 (502)
Q Consensus 155 ~~l~~~~d~~i~i~n~~l~~~~~---~~~~~----~~af-----------~~~d~~l~~~v~~i~~~i~~~g~in~df~d 216 (502)
..|-+.+-.++.++++.++..+. --.++ .+|+ ..|-+++.+.+.|.+.++.+.+ +.+|++
T Consensus 137 ~~lf~~~G~~~~v~~E~~~d~~ta~~g~~~~~f~~ieal~~a~v~~Gl~~~~A~~l~~~~~~G~a~~~~~~~--~~~~~~ 214 (255)
T PRK06476 137 RALFDALGTAVECESEEEFDLLAAASALMATYFGILETATQWLVEQGLERQKARAYLAPLFASLAQDAVRST--KEDFSA 214 (255)
T ss_pred HHHHHHCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCCHHH
T ss_conf 999983899899895788889999734518999999999999998499999999999999999999998758--989999
Q ss_pred HH-HHHCCCCEEEEEEEEC--CC-CCHHHHHHHHHH
Q ss_conf 78-7641586589987614--86-204899998875
Q gi|254781176|r 217 VR-SVMRNMGRAMMGTGEA--SG-HGRGIQAAEAAV 248 (502)
Q Consensus 217 ~~-~v~~~~g~a~~g~g~~--~g-~~r~~~a~~~a~ 248 (502)
++ .|.+-+|.+.-|.-.= .| .+-..+|++.|.
T Consensus 215 L~~~V~SPGGtT~~gl~~Le~~g~~~~l~~av~aa~ 250 (255)
T PRK06476 215 LSREFSTKGGLNEQVLNDFSRQGGYAALTDALDRVL 250 (255)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 998478996779999999998894999999999999
No 174
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=69.89 E-value=7.7 Score=18.12 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=40.5
Q ss_pred EECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 98255788551899704851554255678888838999999972999999726998999980367666740789999999
Q gi|254781176|r 45 VANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIA 124 (502)
Q Consensus 45 ~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a 124 (502)
.+||.++.|..--.. +|-.+-+..=.|-+|+ +=.+.++.+++.+|+||+|.|+|=----=-+-.+|+..
T Consensus 18 ivdtNa~~la~~L~~----~G~~v~~~~~VgD~~~-------~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~ 86 (255)
T COG1058 18 IVDTNAAFLADELTE----LGVDLARITTVGDNPD-------RIVEALREASERADVVITTGGLGPTHDDLTAEAVAKAL 86 (255)
T ss_pred EECCHHHHHHHHHHH----CCCEEEEEEECCCCHH-------HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 034229999999996----4961899996399999-------99999999971899899879858996276899999982
No 175
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=69.81 E-value=7.8 Score=18.11 Aligned_cols=97 Identities=21% Similarity=0.419 Sum_probs=59.1
Q ss_pred HCCC--EEEEEEECCCH--HHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4386--17999966814--7999999985899844999825578855189970485155425567888883899999997
Q gi|254781176|r 12 ELKP--RITVFGVGGGG--GNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 12 ~~~~--~i~v~g~gg~g--~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.++| +|.|.|.||.| +.++..+...... +.+++...- .|-.---++-+.|...... -.+|
T Consensus 30 ~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~-iPv~v~~~y--~lP~~v~~~tLVIavSySG-------------nTeE 93 (328)
T PRK08674 30 EIEPYDNIVISGMGGSGIGGDLLRSLLLDEWK-KPVFVVRDY--FLPAFVDRKTLVIAVSYSG-------------NTEE 93 (328)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEECCC--CCCCCCCCCCEEEEECCCC-------------CCHH
T ss_conf 14765729999575648999999999844799-867985588--7998658885799982899-------------9779
Q ss_pred HHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 299999972-69989999803676667407899999998649849999
Q gi|254781176|r 88 CIDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 88 ~~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
-....++++ +|+.++.||. || .++++|++.+...+.+
T Consensus 94 TL~a~~~A~~rga~vi~Its---GG-------~L~~~a~~~~~~~i~v 131 (328)
T PRK08674 94 TLSAVEQAKKRGAKIIAITS---GG-------KLAEMAKEKGVPVIKI 131 (328)
T ss_pred HHHHHHHHHHCCCCEEEEEC---CC-------CHHHHHHHCCCCEEEE
T ss_conf 99999999975995899948---97-------0678998779988942
No 176
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=69.72 E-value=7.8 Score=18.10 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=30.8
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCC
Q ss_conf 1799996681479999999858998449998255788551899
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKA 58 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~ 58 (502)
||.|||.|--|...--.+.+.|. +.+.++.|..-+...+.
T Consensus 2 kI~ViGlGyVGl~~a~~la~~G~---~V~g~D~d~~~v~~ln~ 41 (185)
T pfam03721 2 RIAVIGLGYVGLPTAVCLAEIGH---DVVGVDINQSKIDKLNN 41 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHC
T ss_conf 79998978748999999994899---39999799899999862
No 177
>PRK12861 malic enzyme; Reviewed
Probab=69.56 E-value=7.9 Score=18.07 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=79.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
..||.+.|-|-||.-++.-+...|++--+.+.|+.. --| ++|.--+-+|...+.|..-....+.
T Consensus 187 ~~kiv~~GaGaa~ia~~~l~~~~G~~~~ni~~~D~~----------G~i------~~~r~~~~~~~k~~~a~~t~~~~l~ 250 (762)
T PRK12861 187 EVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIE----------GVV------YRGRTTLMDPAKERFAQETDARTLA 250 (762)
T ss_pred HEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC----------CCC------CCCCCCCCHHHHHHHHHCCCCCCHH
T ss_conf 616999687788999999999839995558999477----------851------1898653579999998568977799
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHH--------------------HHHHC-CCEE------------EEEEECCCC
Q ss_conf 97269989999803676667407899999--------------------99864-9849------------999504300
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAK--------------------IARNK-GVLT------------VGVVTKPFH 140 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~--------------------~a~~~-~~~~------------~~~v~~pf~ 140 (502)
++++|+|+.+=+.. ||.=| .-.|.. .||+. +... --|...||-
T Consensus 251 ea~~gaDvfiG~S~--~~~~~--~~mv~~Ma~~pivfalANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNvL~FP~i 326 (762)
T PRK12861 251 EVIGGADVFLGLSA--GGVLK--AEMLKAMAARPLILALANPTPEIFPELAHATRDDVVIATGRSDYPNQVNNVLCFPYI 326 (762)
T ss_pred HHHCCCCEEEECCC--CCCCC--HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEECHHH
T ss_conf 98378988997678--99899--999985377876997269998889899854168689834887885312453204187
Q ss_pred CCCHHH---------HHH-HHHHHHHHHH
Q ss_conf 040678---------888-9999999998
Q gi|254781176|r 141 FEGSRR---------MRV-AESGIEALQE 159 (502)
Q Consensus 141 ~eg~~r---------~~~-a~~~~~~l~~ 159 (502)
|-|-.- |+. |-.+|..|-+
T Consensus 327 FRGaLdv~A~~In~~Mk~Aa~~ala~la~ 355 (762)
T PRK12861 327 FRGALDVGATTITREMEIAAVHAIAGLAE 355 (762)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 76687606021889999999999988743
No 178
>PRK08526 threonine dehydratase; Provisional
Probab=69.49 E-value=3.9 Score=20.34 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=30.0
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 9999726998999980367666740789999999864--984999950430004067888899
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSRRMRVAE 151 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~r~~~a~ 151 (502)
||.+.+.+.|.||+-.| |||.-+|.+-.+ |.+ .+-++|| -| ||.--|.++.
T Consensus 161 Eileq~~d~D~vvvpvG-GGGLisGia~a~----K~~~P~ikViGV--Ep---e~a~~m~~Sl 213 (403)
T PRK08526 161 EMLDEISDLDMIVVPVG-GGGLISGIASAA----KQINPNIKIIGV--GA---KGAPAMKESF 213 (403)
T ss_pred HHHHHCCCCCEEEECCC-CCCHHHHHHHHH----HHHCCCCCEEEE--CC---CCCHHHHHHH
T ss_conf 99975568998998588-861689999999----862998838996--64---7876899998
No 179
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=69.37 E-value=1.3 Score=23.94 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCEEEEEEECCCHHHHH-------HHHHHCCCCCCEEEEECCCHHHHHHCCCC
Q ss_conf 86179999668147999-------99998589984499982557885518997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAV-------NNMVSSGLQGVNFVVANTDAQALMMSKAK 59 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~-------~~~~~~~~~~~~~~~~ntd~~~l~~~~~~ 59 (502)
.=||..+|=||.-||+- +| |+.+=+|..=||+|||.-+|....-+
T Consensus 39 GgK~L~CGNGgSaadAqHFAaEl~GR-f~~eR~glPAIAL~tD~S~Ltai~ND 90 (186)
T TIGR00441 39 GGKILICGNGGSAADAQHFAAELVGR-FKLERPGLPAIALNTDISILTAIAND 90 (186)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 89089856850433588899987164-00026776467776223532320011
No 180
>pfam02608 Bmp Basic membrane protein. This is a family of basic membrane lipoproteins form Borrelia and various putative lipoproteins form other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family. One protein, Bacillus subtilis med, is a transcriptional activator.
Probab=68.92 E-value=8.1 Score=17.98 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
|.++.|+=.|+-+-..-|.+.-.|++.+. ....+..+..-.. .++ ...-...++
T Consensus 1 k~vv~v~~~G~~~D~sfn~~a~~G~~~~~-----------~e~g~~~~~~e~~---------~~~------~~~~~~~~~ 54 (302)
T pfam02608 1 KVVVAVFDPGTIDDKSFNQSAYEGIRRFK-----------KEFNIELIYKESS---------ELQ------DEDYEALLK 54 (302)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHH-----------HHHCCEEEEEECC---------CCC------HHHHHHHHH
T ss_conf 97999994799998767799999999999-----------9879959999568---------899------899999999
Q ss_pred HHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 972-6998999980367666740789999999864984999
Q gi|254781176|r 94 EML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 94 ~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
.+. +|.|++| ++|..-...+.++|++.--....
T Consensus 55 ~~a~~g~dlIi-------~~g~~~~~~~~~vA~~yPd~~F~ 88 (302)
T pfam02608 55 LLKDQGYDLIV-------LTGFRLQDALNEVSSDYPDTKFA 88 (302)
T ss_pred HHHHCCCCEEE-------ECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99977999999-------86566789999999988999799
No 181
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=68.67 E-value=8.2 Score=17.95 Aligned_cols=91 Identities=24% Similarity=0.313 Sum_probs=50.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------HHHCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 78855189970485155425567888883899999997299999-------97269989999803676667407899999
Q gi|254781176|r 50 AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT-------EMLDKTHMCFVTAGMGGGTGTGAAPIIAK 122 (502)
Q Consensus 50 ~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~-------~~~~~~~~~~~~ag~gggtgtg~~p~ia~ 122 (502)
.+.|.....-.+|| |-|-||||-+|..-|+....+-. ..+.+-++|.-+++|
T Consensus 7 ~~di~~la~Ga~iL-------GtGGGGdpyig~lm~~~~~~~~~~i~vl~~d~i~e~~~v~~v~mm-------------- 65 (357)
T COG3535 7 EEDIENLAIGAAIL-------GTGGGGDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMM-------------- 65 (357)
T ss_pred HHHHHHHHHHHEEE-------CCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHCCCCCEEEEECCC--------------
T ss_conf 76778776202046-------038899802779999999984597378413326766648984146--------------
Q ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99864984999950430004067888899999999986333545027
Q gi|254781176|r 123 IARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPN 169 (502)
Q Consensus 123 ~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n 169 (502)
|+-+|.+=-+|-..|+.+-++.-+ ..+++.+|+++.+.+
T Consensus 66 -----GAP~v~iEk~p~g~e~~ra~e~~~---~~~~k~v~ai~s~Ei 104 (357)
T COG3535 66 -----GAPIVGIEKLPNGDEAIRAFEVLE---DYLGKPVDAIISIEI 104 (357)
T ss_pred -----CCCHHHEEECCCCHHHHHHHHHHH---HHHCCCEEEEEEEEC
T ss_conf -----886010010788089999999999---985896017987600
No 182
>KOG0685 consensus
Probab=68.46 E-value=8.3 Score=17.92 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=43.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH--HHHHH-CCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 8617999966814799999998589984499982557--88551-899704851554255678888838
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA--QALMM-SKAKQIIQLGSGITEGLGAGSHPE 79 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~--~~l~~-~~~~~~~~~g~~~~~g~g~g~~~~ 79 (502)
.+||.|||-|=||--+-++++++|..+|..+-. .|. -.... --++.+|++|..-..| ..++|=
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa-~dRIGGRI~ti~~~d~~ielGAqwihG--~~gNpV 86 (498)
T KOG0685 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEA-SDRIGGRIHTIPFADGVIELGAQWIHG--EEGNPV 86 (498)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCEEEEEECCCCEEEECCEEECC--CCCCHH
T ss_conf 964999898567799999999828964899970-466675576687278737624666337--788739
No 183
>KOG2931 consensus
Probab=68.35 E-value=5.2 Score=19.39 Aligned_cols=49 Identities=35% Similarity=0.464 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 99729999997269989999803676667407899999998649849999504
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTK 137 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~ 137 (502)
+++-.+.|...|+...+=-+ -|||-|.| |-|+++.|-.--=.+.|.|-.
T Consensus 105 md~LAd~l~~VL~~f~lk~v-Ig~GvGAG---AyIL~rFAl~hp~rV~GLvLI 153 (326)
T KOG2931 105 MDDLADMLPEVLDHFGLKSV-IGMGVGAG---AYILARFALNHPERVLGLVLI 153 (326)
T ss_pred HHHHHHHHHHHHHHCCCCEE-EEECCCCC---HHHHHHHHHCCHHHEEEEEEE
T ss_conf 89999889999876174437-99513400---999999885294255679998
No 184
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=67.80 E-value=8.5 Score=17.82 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH----H
Q ss_conf 861799996681479999999858998449998255788551899704851554255678888838999999972----9
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEEC----I 89 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~----~ 89 (502)
.-||.++|-|.||.-+.+.|...|+..-+++.+|.+ -| +|+++.-.-++..-+.+.... .
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~g~~~~~i~lvD~~--GL--------------l~~~r~d~~~~~k~~~a~~~~~~~~~ 88 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK--GV--------------IYEGREDDLNPDKNEIAKETNPEKTG 88 (226)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECC--CC--------------CCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 307999876899999999999827760267999367--85--------------24788641449999999872335666
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 9999972699899998036766674078999999986498499995043000406788889999999998--63335450
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQE--TVDTLIVI 167 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~--~~d~~i~i 167 (502)
..+.+.++++++++ |+.| .|.=--.||..+++. -.|=-.+-|-. |=. +++..+. .+ ++..--..
T Consensus 89 ~~l~e~v~~~~vLI---G~S~-~g~Ft~evv~~M~~~---PiIFaLSNPt~-E~t-----pe~a~~~-G~ai~AtG~s~~ 154 (226)
T cd05311 89 GTLKEALKGADVFI---GVSR-PGVVKKEMIKKMAKD---PIVFALANPVP-EIW-----PEEAKEA-GADIVATGRSDF 154 (226)
T ss_pred CCHHHHHCCCCEEE---ECCC-CCCCCHHHHHHHCCC---CEEEECCCCCC-CCC-----HHHHHHH-CCCEEECCCCCC
T ss_conf 87999837775799---7268-997799999974779---88987889976-489-----9999872-770895499799
Q ss_pred HHHH--HHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2788--8741--3665318999744679999998888876516
Q gi|254781176|r 168 PNQN--LFRI--ANDKTTFADAFSMADQVLYSGVSCITDLMIK 206 (502)
Q Consensus 168 ~n~~--l~~~--~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~ 206 (502)
|||- .+=. .+--+-...|-.+.|+.+..+.+.++++.+.
T Consensus 155 P~Q~NN~~iFPGiglG~~~~~a~~itd~m~~aAA~aLA~~v~~ 197 (226)
T cd05311 155 PNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEE 197 (226)
T ss_pred CCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8777625776416577998167668999999999999852881
No 185
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.77 E-value=6 Score=18.96 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=62.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEE------EEECCCCCCCCCCCCCHHH-----HHH
Q ss_conf 61799996681479999999858998449998255788551899704------8515542556788888389-----999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQI------IQLGSGITEGLGAGSHPEV-----GRA 83 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~------~~~g~~~~~g~g~g~~~~~-----g~~ 83 (502)
.||.|+|-|.-||=.--+|.+.| ..|-|++-.--.++|....-... .......+..-..+ ..++ =.-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~-~~Dlviv~vKa~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALG-PADLVIVTVKAY 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCC-CCCEEEEEECCC
T ss_conf 95999878789999999998589-9579981089999998789799816885224432356733367-888899980422
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH
Q ss_conf 99972999999726-99899998036766674078999999986498499995043000406788
Q gi|254781176|r 84 AAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRM 147 (502)
Q Consensus 84 ~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~ 147 (502)
...+-...|...+. .+-++|+-=|||. .-.+.++-... -+..|+++.....+|+-+.
T Consensus 79 q~~~al~~l~~~~~~~t~vl~lqNG~g~------~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v 136 (307)
T COG1893 79 QLEEALPSLAPLLGPNTVVLFLQNGLGH------EEELRKILPKE-TVLGGVTTHGAVREGPGHV 136 (307)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCCH------HHHHHHHCCCC-EEEEEEEECCEEECCCCEE
T ss_conf 3899999987307998489997089726------99998738834-2898998424387178459
No 186
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=67.64 E-value=8.6 Score=17.80 Aligned_cols=227 Identities=26% Similarity=0.374 Sum_probs=112.2
Q ss_pred CCHHHHHHCCCCEEEEECCCCCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCH
Q ss_conf 557885518997048515542556788888--------389999999729999997269989---999803676667407
Q gi|254781176|r 48 TDAQALMMSKAKQIIQLGSGITEGLGAGSH--------PEVGRAAAEECIDEITEMLDKTHM---CFVTAGMGGGTGTGA 116 (502)
Q Consensus 48 td~~~l~~~~~~~~~~~g~~~~~g~g~g~~--------~~~g~~~a~~~~~~i~~~~~~~~~---~~~~ag~gggtgtg~ 116 (502)
.|.+.+.+..++.+| +|||.-.| -=+|..-|.|...-|.++++.-.| .++. -|..|||-
T Consensus 9 ~~~~~~~~i~aHSHI-------~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi---~GppgTGK 78 (450)
T COG1224 9 EDVGERERIAAHSHI-------KGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILI---VGPPGTGK 78 (450)
T ss_pred CCCCHHCCCCHHCCC-------CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE---ECCCCCCH
T ss_conf 220011022100101-------14563888987476886112498887625999999717666617999---78999768
Q ss_pred HHHHHHHHHHCCCEE--EEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHHH-----HH--------------HHHH---
Q ss_conf 899999998649849--9995043-000406788889999999998633354-----50--------------2788---
Q gi|254781176|r 117 APIIAKIARNKGVLT--VGVVTKP-FHFEGSRRMRVAESGIEALQETVDTLI-----VI--------------PNQN--- 171 (502)
Q Consensus 117 ~p~ia~~a~~~~~~~--~~~v~~p-f~~eg~~r~~~a~~~~~~l~~~~d~~i-----~i--------------~n~~--- 171 (502)
+-.---|||++|.-| +++...- |+.|- ++-+.=++.|++..---| |+ |-..
T Consensus 79 TAlA~gIa~eLG~dvPF~~isgsEiYS~E~----kKTE~L~qa~RraIGvrikE~reV~EGeV~~l~i~~~~~p~~~y~~ 154 (450)
T COG1224 79 TALAMGIARELGEDVPFVAISGSEIYSLEV----KKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGK 154 (450)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCEEEEECC----CHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCC
T ss_conf 899999999858999821501332233100----0889999999986454864666888778999987623579987665
Q ss_pred -------HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCE-EEEEEEECCCCCHHHHH
Q ss_conf -------8741366531899974467999999888887651665555898787876415865-89987614862048999
Q gi|254781176|r 172 -------LFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGR-AMMGTGEASGHGRGIQA 243 (502)
Q Consensus 172 -------l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~-a~~g~g~~~g~~r~~~a 243 (502)
-++..+...+|.-.=.+++++...+|. .| ||-.+=.+.|. ..+|.+.+.......-+
T Consensus 155 ~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~~~V~--------~G-------DVI~Id~etG~V~klGrs~~~~~~~~dl~ 219 (450)
T COG1224 155 VPSGAIITLKTKDEEKTLRLGPEIAEQLVKEGVE--------EG-------DVIYIDAETGRVKKLGRSKARAREDFDLE 219 (450)
T ss_pred CCCCEEEEEEECCCCEEEECCHHHHHHHHHHCCC--------CC-------CEEEEECCCCEEEEEECCCCCCCCCCCCC
T ss_conf 5453289999636645762598999999983744--------58-------78999825667999422423354223344
Q ss_pred HHHHHHCCC--------------CCCCCCCCC--CEEEEEEECCC-CCCHHHHHHHHHH-HHHHCC-CCCCEEEEEE-EC
Q ss_conf 988752701--------------000224555--37899961688-8899999999999-997416-8863999853-13
Q gi|254781176|r 244 AEAAVANPL--------------LDEASMKGS--QGLLISITGGS-DLTLFEVDEAATR-IREEVD-SEANIILGAT-FD 303 (502)
Q Consensus 244 ~~~a~~~pl--------------l~~~~~~~a--~~~l~~i~~~~-~~~l~e~~~~~~~-i~~~~~-~~a~ii~G~~-~d 303 (502)
.+....+|= |+|.++..| .|+|..+.++. .++ .|+.+-+|. +..-++ ..|.|+-|+- +|
T Consensus 220 ~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~~eI~-~evR~~vn~~V~~~ieeGkAElVpGVLFID 298 (450)
T COG1224 220 DTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGTGEIT-DEVREEVNEKVKKWIEEGKAELVPGVLFID 298 (450)
T ss_pred CEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 2179877988525667789998700313432041113756527766578-899999999999998549578613428973
Q ss_pred C
Q ss_conf 4
Q gi|254781176|r 304 E 304 (502)
Q Consensus 304 ~ 304 (502)
+
T Consensus 299 E 299 (450)
T COG1224 299 E 299 (450)
T ss_pred C
T ss_conf 2
No 187
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=67.39 E-value=6.6 Score=18.65 Aligned_cols=41 Identities=32% Similarity=0.474 Sum_probs=28.3
Q ss_pred CCCCCCH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6667407-89999999864984999950430004067888899999999986
Q gi|254781176|r 110 GGTGTGA-APIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET 160 (502)
Q Consensus 110 ggtgtg~-~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~ 160 (502)
-|||||+ +-++|++-...|-+ |.|| .|...|+.+.+.|+++
T Consensus 101 AGtGSG~lt~~La~~vg~~G~v--------~tyE--~r~d~~k~A~~Nl~~~ 142 (256)
T COG2519 101 AGTGSGALTAYLARAVGPEGHV--------TTYE--IREDFAKTARENLSEF 142 (256)
T ss_pred CCCCCHHHHHHHHHHHCCCCEE--------EEEE--ECHHHHHHHHHHHHHH
T ss_conf 1568059999999964888459--------9999--5278999999999984
No 188
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.22 E-value=8.7 Score=17.74 Aligned_cols=116 Identities=20% Similarity=0.270 Sum_probs=58.1
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC-H-------HHHHHCCCCEEEEECCCCCC---------------CCC
Q ss_conf 799996681479999999858998449998255-7-------88551899704851554255---------------678
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD-A-------QALMMSKAKQIIQLGSGITE---------------GLG 73 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd-~-------~~l~~~~~~~~~~~g~~~~~---------------g~g 73 (502)
-.|+|+|+.|-.+...+.+.|. ++++.+.. . +.|.... ..+.+|....- --|
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~L~~~g--i~~~~g~~~~~~~~~~~~~~~d~vV~SPG 77 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGW---EVVVSERNDSPELLERQQELEQEG--ITVELGKPLELESFQPWLDQPDLVVVSPG 77 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCCC---EEEEEECCCCCCHHHHHHHHHHCC--CEEEECCCCCCCCHHHHCCCCCEEEECCC
T ss_conf 9999548999999999997899---599998989923478999998759--86981676664301331167888998996
Q ss_pred C-CCCHHHHHHHHHH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC--EEEEEEECCCC
Q ss_conf 8-8883899999997-----299999972699899998036766674078999999986498--49999504300
Q gi|254781176|r 74 A-GSHPEVGRAAAEE-----CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV--LTVGVVTKPFH 140 (502)
Q Consensus 74 ~-g~~~~~g~~~a~~-----~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~--~~~~~v~~pf~ 140 (502)
- -.+|.+-+..... ..+-..+.+.+..++-| +|--|.|=| +-.++.+.+..|. .+.|-+-.|+.
T Consensus 78 I~~~~p~~~~a~~~gi~i~~eiel~~~~~~~~~~IaV-TGTnGKTTT--t~ll~~iL~~~g~~~~~~GNIG~p~~ 149 (459)
T PRK02705 78 IPWDHPTLVELREKGIEVIGEMELAWRALKHIPWVGI-TGTNGKTTV--THLLAHILQAAGLNAPMCGNIGYAAC 149 (459)
T ss_pred CCCCCHHHHHHHHCCCCEECHHHHHHHHHCCCCEEEE-ECCCCCHHH--HHHHHHHHHHCCCCCEEECCCCCCHH
T ss_conf 4998999999998799721499999998504975777-178972789--99999999983998536401376204
No 189
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=66.67 E-value=8.9 Score=17.67 Aligned_cols=98 Identities=11% Similarity=0.272 Sum_probs=45.4
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 03676667407899999998649849999504300040678888999999999863335450278887413665318999
Q gi|254781176|r 106 AGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADA 185 (502)
Q Consensus 106 ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~a 185 (502)
.-+..-+|+..+ .|-|.||.+| |+|-.-++.+.. +.|..... .+ +.. ..++-+ .
T Consensus 38 ~eLA~~~~vS~a-TV~Rf~kkLG------------f~Gf~efK~~l~--~~l~~~~~-~~---~~~----~~~~d~---~ 91 (284)
T PRK11302 38 ATLAKMANVSEP-TVNRFCRSLD------------TKGFPDFKLHLA--QSLANGTP-YV---NRN----VEEDDS---P 91 (284)
T ss_pred HHHHHHHCCCHH-HHHHHHHHHC------------CCCHHHHHHHHH--HHHHCCCC-CC---CCC----CCCCCC---H
T ss_conf 999989699888-9999999957------------897899999999--99753673-21---234----788899---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH---HHCCCCE-EEEEEEEC
Q ss_conf 7446799999988888765166555589878787---6415865-89987614
Q gi|254781176|r 186 FSMADQVLYSGVSCITDLMIKEGLINLDFADVRS---VMRNMGR-AMMGTGEA 234 (502)
Q Consensus 186 f~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~---v~~~~g~-a~~g~g~~ 234 (502)
-.....++...+..+.+... .+|...+.. .|.+... -++|.|.+
T Consensus 92 ~~~~~ki~~~~~~~l~~t~~-----~ld~~~l~~av~li~~A~~I~i~G~G~S 139 (284)
T PRK11302 92 EAYTGKIFESAMASLDHARQ-----SLDPSAINRAVDLLTQAKKISFFGLGAS 139 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999999999999998-----5599999999999971895899964850
No 190
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=66.55 E-value=9 Score=17.65 Aligned_cols=135 Identities=24% Similarity=0.396 Sum_probs=82.2
Q ss_pred HHHHHHHHHC--CCCEEEEEECCCCCCCC-CHHHHHHHHHHHC--CCEEEEE----------EECCCCCCCHHHHHHHHH
Q ss_conf 2999999726--99899998036766674-0789999999864--9849999----------504300040678888999
Q gi|254781176|r 88 CIDEITEMLD--KTHMCFVTAGMGGGTGT-GAAPIIAKIARNK--GVLTVGV----------VTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 88 ~~~~i~~~~~--~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~--~~~~~~~----------v~~pf~~eg~~r~~~a~~ 152 (502)
+.++|.+.|+ +-|++|++ ||-|| .+|--|++..+++ ++-+||| +-.-|-|+ .-...|.+
T Consensus 159 d~~~ivd~l~~~gid~L~~I----GGDGTl~gA~~i~~e~~~rgl~I~VvGIPKTIDNDi~~~d~sfGF~--TAv~~a~~ 232 (442)
T PRK06830 159 DPVEIVDTLERMNINILFVI----GGDGTLKGALKIAEEIARRNLKISVVGIPKTIDNDINFIQKSFGFE--TAVEKATE 232 (442)
T ss_pred CHHHHHHHHHHCCCCEEEEE----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEECHH--HHHHHHHH
T ss_conf 98999999998399989994----8802789999999999963899407745643347754303131246--19999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCC-----HHHHHHHHCCCC
Q ss_conf 999999863335450278-88741366531899974467999999888887651665-55589-----878787641586
Q gi|254781176|r 153 GIEALQETVDTLIVIPNQ-NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEG-LINLD-----FADVRSVMRNMG 225 (502)
Q Consensus 153 ~~~~l~~~~d~~i~i~n~-~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g-~in~d-----f~d~~~v~~~~g 225 (502)
.|.++.-.+-+. +|- -|.++.+...+|.-+++- | ..+-+|++..|= -..+| +.-++.-++..+
T Consensus 233 ai~~~~~eA~s~---~~gvg~v~lMGR~sG~IA~~a~----l---A~~~ad~~LIPE~pf~l~g~~~~l~~l~~R~~~k~ 302 (442)
T PRK06830 233 AIACAHVEAKGA---PNGIGLVKLMGRHSGFIAAYAA----L---ASKDVNFVLIPEVPFDLEGENGLLAHLERRLLERG 302 (442)
T ss_pred HHHHHHHHHHCC---CCCEEEEEECCCCHHHHHHHHH----H---CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 999998776515---7855999983664308999877----5---13778789912886455561229999999985599
Q ss_pred EEEEEEEECCCCC
Q ss_conf 5899876148620
Q gi|254781176|r 226 RAMMGTGEASGHG 238 (502)
Q Consensus 226 ~a~~g~g~~~g~~ 238 (502)
.|++-..|+.|++
T Consensus 303 ~avIvVAEGAGq~ 315 (442)
T PRK06830 303 HAVIVVAEGAGQK 315 (442)
T ss_pred CEEEEEECCCCCC
T ss_conf 5699995576643
No 191
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=66.53 E-value=9 Score=17.65 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=61.5
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 799996681479999999858998449998255788551899-704851554255678888838999999972999999-
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKA-KQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE- 94 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~-~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~- 94 (502)
|-|+|.|--|-.....|.+.+ ++++++.|.+....... ...+..| -+.+|++ +++
T Consensus 1 viI~G~g~~G~~la~~L~~~~----~v~vId~d~~~~~~~~~~~~~vi~G--------D~~~~~~-----------L~~a 57 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG----PVVVIDKDPERVEELREEGVPVVVG--------DATDEEV-----------LEEA 57 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHCCCEEEEE--------ECCCHHH-----------HHHH
T ss_conf 999878889999999998089----9999999879987788669869999--------5688667-----------8761
Q ss_pred HHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHC-CC-EEEEEEECCC
Q ss_conf 72699899998036766674-0789999999864-98-4999950430
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNK-GV-LTVGVVTKPF 139 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~-~~-~~~~~v~~pf 139 (502)
-++.+++|+++. +. -..-.++..+|++ +. -+++.+.-|-
T Consensus 58 ~i~~a~~vi~~~------~~d~~n~~~~~~~r~~~~~~~iiar~~~~~ 99 (115)
T pfam02254 58 GIEDADAVVAAT------GDDEANILIVLLARELNPAKKIIARANDPE 99 (115)
T ss_pred CCCCCCEEEEEC------CCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 920287999962------984999999999999789980999987899
No 192
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.30 E-value=4.7 Score=19.73 Aligned_cols=67 Identities=27% Similarity=0.358 Sum_probs=38.1
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCC--EEEEECCCCCCCCCCCCCHH
Q ss_conf 5438617999966814799999998589984499982557885518997--04851554255678888838
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK--QIIQLGSGITEGLGAGSHPE 79 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~--~~~~~g~~~~~g~g~g~~~~ 79 (502)
=.++|.=.|+-|+++|||+++++.. +...|.-|=+|--.-+|...+.. ..+- =...-+=+|.|..|.
T Consensus 31 L~~~~~d~vl~I~s~G~n~l~yl~~-~p~~i~aVDlN~~q~~Ll~LK~aa~~~l~-~~~f~~~fG~g~~~~ 99 (376)
T pfam11899 31 LNLGPDDTVLAITSAGCNALSYLTA-GPARVHAVDLNPAQNALLELKLAAIRALP-YEDFWRLFGEGKHPN 99 (376)
T ss_pred HCCCCCCEEEEEECCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHHHHHHCCCCCCC
T ss_conf 4899999799983774359997626-97768998489999999999999998199-999999976687710
No 193
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=66.10 E-value=9.1 Score=17.59 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=52.7
Q ss_pred CHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 84543861799996681479999999858998449998255788551899704851-55425567888883899999997
Q gi|254781176|r 9 DITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQL-GSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 9 ~~~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~-g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.|..-|-|+.|||=|-.+.-=+..+.+.|-. |..|+-.-...-.... ...+|.+ -++...
T Consensus 19 ~l~s~klkvLVVGGG~VA~RKi~~Ll~agA~-VtVVSP~~~~el~~L~-~~~~I~~i~r~y~~----------------- 79 (222)
T PRK05562 19 SLLSNKIKVLVIGGGKAAFIKGKTFLKKGCY-VEILSKEFSKEFLDLK-KYGNLKLIKGNYDK----------------- 79 (222)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHH-HCCCEEEEECCCCH-----------------
T ss_conf 4312676699999879999999999878998-9998786688999999-75986999686797-----------------
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEEE
Q ss_conf 299999972699899998036766674-0789999999864984999
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~~~ 133 (502)
..|++++|||+. |.- ..-..|++.|++.|+|+..
T Consensus 80 ------~dL~~~~LVIaA------Tdd~~lN~~I~~~a~~~~ilvNv 114 (222)
T PRK05562 80 ------EFIKDKHLIIIA------TDDEELNNKIRKHCDRLYKLYID 114 (222)
T ss_pred ------HHCCCCCEEEEE------CCCHHHHHHHHHHHHHHCCEEEE
T ss_conf ------780887399994------79889999999999980998898
No 194
>PRK07064 hypothetical protein; Provisional
Probab=65.77 E-value=6.9 Score=18.49 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=15.3
Q ss_pred EEEEECCCHHHHHHH-HHHCCCCCCEEEEECCCHH
Q ss_conf 999966814799999-9985899844999825578
Q gi|254781176|r 18 TVFGVGGGGGNAVNN-MVSSGLQGVNFVVANTDAQ 51 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~-~~~~~~~~~~~~~~ntd~~ 51 (502)
+|||+-|..+.-+-. +.+. .+++||.+--..-
T Consensus 20 ~vFgvpG~~~~~l~dal~~~--~~i~~v~~~hE~~ 52 (544)
T PRK07064 20 TAFGVISIHNMPILDAIGRR--GKIRFVPARGEAG 52 (544)
T ss_pred EEEECCCCCHHHHHHHHHHC--CCCEEEEECCHHH
T ss_conf 99978883569999998756--9973980397899
No 195
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=65.69 E-value=9.3 Score=17.54 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 366531899974467999999-8888876516655558987878764158
Q gi|254781176|r 176 ANDKTTFADAFSMADQVLYSG-VSCITDLMIKEGLINLDFADVRSVMRNM 224 (502)
Q Consensus 176 ~~~~~~~~~af~~~d~~l~~~-v~~i~~~i~~~g~in~df~d~~~v~~~~ 224 (502)
.++ .+--.+.+++++.|.-+ +.++++.++-----.||...+..+++.+
T Consensus 161 ~G~-~G~g~~~Kl~nN~l~~~~~~a~aEal~la~k~Gld~~~~~~vl~~~ 209 (295)
T PRK11559 161 TGE-IGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGG 209 (295)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 289-4589999999999999999999999999998599999999999737
No 196
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=65.54 E-value=9.3 Score=17.52 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=12.0
Q ss_pred EEEEEECCCHHHHHHHHHHCCC
Q ss_conf 7999966814799999998589
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGL 38 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~ 38 (502)
+.|||+||-|-++|......|-
T Consensus 189 vaV~GlGgVGlaaI~gA~~agA 210 (366)
T COG1062 189 VAVFGLGGVGLAAIQGAKAAGA 210 (366)
T ss_pred EEEEECCHHHHHHHHHHHHCCC
T ss_conf 8999042766999998987488
No 197
>PRK03009 consensus
Probab=65.50 E-value=4.5 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=17.4
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 641586589987614862048999988
Q gi|254781176|r 220 VMRNMGRAMMGTGEASGHGRGIQAAEA 246 (502)
Q Consensus 220 v~~~~g~a~~g~g~~~g~~r~~~a~~~ 246 (502)
-|+.+|.+++|+-+.. ..|.+|.++
T Consensus 240 ~MSGSGSt~Fglf~~~--~~A~~a~~~ 264 (287)
T PRK03009 240 RMTGSGACVFAAFKSK--AEAEAAQAK 264 (287)
T ss_pred EEECCCCEEEEEECCH--HHHHHHHHH
T ss_conf 8777150288998999--999999986
No 198
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=65.26 E-value=9.5 Score=17.48 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=107.1
Q ss_pred EEEEEEECCCHHHHHHHHHHC-C--CCCCE---------------EEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 179999668147999999985-8--99844---------------99982557885518997048515542556788888
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSS-G--LQGVN---------------FVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSH 77 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~-~--~~~~~---------------~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~ 77 (502)
||..|||||.|...+-.+... | ++|.+ -|.+.-|+.++.-- ..+..+.-+.+ ++
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~---~~VV~s~Ai~~-----~N 80 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDA---DVVVVSNAIKE-----DN 80 (459)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCEEECCCCHHHCCCC---CEEEEECCCCC-----CC
T ss_conf 17999655056799999999679911771665267789999789968679797885899---65999656579-----99
Q ss_pred HHHHHHHHH----HHHHH-HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHH--
Q ss_conf 389999999----72999-999726998999980367666740789999999864984-9999504300040678888--
Q gi|254781176|r 78 PEVGRAAAE----ECIDE-ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL-TVGVVTKPFHFEGSRRMRV-- 149 (502)
Q Consensus 78 ~~~g~~~a~----~~~~~-i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~-~~~~v~~pf~~eg~~r~~~-- 149 (502)
||+-++-.. -++.+ +.++++. .-+|-+||--|.|-|-+ .+|.+..+.|.- |+.+=-.+=.|...-|...
T Consensus 81 pEi~~A~e~~ipi~~r~e~L~elm~~-~~~iaVaGTHGKTTTTs--mla~vl~~~gldPtf~iGG~~~~~g~na~~g~~~ 157 (459)
T COG0773 81 PEIVAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTS--MLAWVLEAAGLDPTFLIGGILKNFGTNARLGSGD 157 (459)
T ss_pred HHHHHHHHCCCCEECHHHHHHHHHHC-CEEEEEECCCCCHHHHH--HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 89999998599816289999999707-71699947887540899--9999998679998799777445577655458886
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHH
Q ss_conf -----9999999998633354502788--874136653189997446799999988888765166--5555898787876
Q gi|254781176|r 150 -----AESGIEALQETVDTLIVIPNQN--LFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKE--GLINLDFADVRSV 220 (502)
Q Consensus 150 -----a~~~~~~l~~~~d~~i~i~n~~--l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~--g~in~df~d~~~v 220 (502)
|.+.=..+..+.-.+.||.|=- =++.|+.-..+.++| .....-+..- .+++.|=--|+.+
T Consensus 158 ~fV~EADEsD~sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F-----------~~f~~~vp~~G~~v~~~dd~~l~~l 226 (459)
T COG0773 158 YFVAEADESDSSFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAF-----------HHFVRNVPFYGRAVVCGDDPNLREL 226 (459)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHH-----------HHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 49999515416502488978998078834001218999999999-----------9999838866559997888889998
Q ss_pred HCCCCEE-EEEEEECC
Q ss_conf 4158658-99876148
Q gi|254781176|r 221 MRNMGRA-MMGTGEAS 235 (502)
Q Consensus 221 ~~~~g~a-~~g~g~~~ 235 (502)
+...... ++-+|...
T Consensus 227 ~~~~~~~~v~tyG~~~ 242 (459)
T COG0773 227 LSRGCWSPVVTYGFDD 242 (459)
T ss_pred HHCCCCCCEEEECCCC
T ss_conf 7222587379424787
No 199
>PRK07261 topology modulation protein; Provisional
Probab=65.13 E-value=6.1 Score=18.87 Aligned_cols=89 Identities=11% Similarity=0.226 Sum_probs=48.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
||.|||.+|+|-.++.+.+...+. +.++-++. +.-++.-+ +..-+|-...+.++
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~-ip~~~LD~-------------l~w~p~w~------------~~~~~e~~~~~~~~ 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYN-CPVLHLDQ-------------LHFSSNWQ------------ERDDDDMIADISNF 55 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCEEEECC-------------EEECCCCE------------ECCHHHHHHHHHHH
T ss_conf 899988999868999999999879-79797022-------------78889998------------88899999999999
Q ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 269989999803676667407899999998649849999504300
Q gi|254781176|r 96 LDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 96 ~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~ 140 (502)
+.... .|+-|-.+.|= ..+ ++ .-+-||-+.-+|+.
T Consensus 56 ~~~~~--WIiDGny~~~~--~~~---rl---~~aD~iI~Ld~p~~ 90 (171)
T PRK07261 56 LLKQD--WIIEGNYSNCL--YEE---RM---AEADQIIFLNFSRF 90 (171)
T ss_pred HHCCC--EEEECCCCCHH--HHH---HH---HHCCEEEEECCCHH
T ss_conf 84898--79947851247--776---79---77999999858499
No 200
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=64.99 E-value=9.4 Score=17.49 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 8617999966814799999998589984
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGV 41 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~ 41 (502)
+.++.|.|+||=|+++-=.|-+.|+.-.
T Consensus 21 ~a~VAicGlGGLGS~~AinLAR~GigkL 48 (200)
T TIGR02354 21 KASVAICGLGGLGSNVAINLARAGIGKL 48 (200)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCE
T ss_conf 5827897016116899999987302202
No 201
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=64.94 E-value=9.6 Score=17.44 Aligned_cols=164 Identities=21% Similarity=0.242 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-----------------HHCCCC----------------EEEEEECCCCCCCCCHHHH
Q ss_conf 8888838999999972999999-----------------726998----------------9999803676667407899
Q gi|254781176|r 73 GAGSHPEVGRAAAEECIDEITE-----------------MLDKTH----------------MCFVTAGMGGGTGTGAAPI 119 (502)
Q Consensus 73 g~g~~~~~g~~~a~~~~~~i~~-----------------~~~~~~----------------~~~~~ag~gggtgtg~~p~ 119 (502)
-||-+|++++.-|.+-.+++++ +++.-+ +.=++-=+||-+|.|-+.+
T Consensus 26 a~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStI 105 (299)
T COG2074 26 AAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTI 105 (299)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 61468258999999999999757972761999999999998732879999999999986157875999617887772579
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHH--------H
Q ss_conf 999998649849999504300040678888999999999863-3354502788874136653189997446--------7
Q gi|254781176|r 120 IAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETV-DTLIVIPNQNLFRIANDKTTFADAFSMA--------D 190 (502)
Q Consensus 120 ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~-d~~i~i~n~~l~~~~~~~~~~~~af~~~--------d 190 (502)
-.++|+.+||-.|- .+-+--|= .|.-...+=+..|...+ |+. +.|..-. ..-|+...|.-- |
T Consensus 106 A~ElA~rLgI~~vi--sTD~IREv-lR~ii~~~l~PtLh~Ssy~Aw-----kalr~~~-~~~piiaGF~dqa~~V~~GI~ 176 (299)
T COG2074 106 AGELARRLGIRSVI--STDSIREV-LRKIISPELLPTLHTSSYDAW-----KALRDPT-DENPIIAGFEDQASAVMVGIE 176 (299)
T ss_pred HHHHHHHCCCCEEE--CCHHHHHH-HHHHCCHHHCCHHHHHHHHHH-----HHHCCCC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999972986100--42479999-997379774553567577999-----9836899-996131317877679998899
Q ss_pred HHHHHHHHHHHHHH-----HCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCC---HHH-HHHHHHHHCCC
Q ss_conf 99999988888765-----1665555898787876415865899876148620---489-99988752701
Q gi|254781176|r 191 QVLYSGVSCITDLM-----IKEGLINLDFADVRSVMRNMGRAMMGTGEASGHG---RGI-QAAEAAVANPL 252 (502)
Q Consensus 191 ~~l~~~v~~i~~~i-----~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~---r~~-~a~~~a~~~pl 252 (502)
.|+..++.-=.++| ..||+|+-. .. +.-..||-...++-+. |-. .+-..+.++|+
T Consensus 177 ~VI~RAi~eG~~lIIEGvHlVPg~i~~~-----~~--~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~ 240 (299)
T COG2074 177 AVIERAIEEGEDLIIEGVHLVPGLIKEE-----AL--GNNVFMFMLYIADEELHRERFYDRIRYTHASRPG 240 (299)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCHH-----HH--CCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999998537535887421150021676-----61--3551789998388789999999988887605965
No 202
>PRK00549 competence damage-inducible protein A; Provisional
Probab=64.56 E-value=9.7 Score=17.39 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=40.4
Q ss_pred EECCCHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
Q ss_conf 982557885518------99704851554255678888838999999972999999726998999980367666740789
Q gi|254781176|r 45 VANTDAQALMMS------KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAP 118 (502)
Q Consensus 45 ~~ntd~~~l~~~------~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p 118 (502)
.+||.++.|.+. .+..++.+|. +++ .=.+.++.+++.+|+||+|-|||--.--=-..
T Consensus 17 i~dtN~~~la~~L~~~G~~v~~~~tv~D----------~~~-------~i~~~l~~a~~r~d~vi~tGGLGPT~DDlT~e 79 (413)
T PRK00549 17 IVNTNAQFLSEKLAELGIDVYHQTVVGD----------NPE-------RLLSALEIAEERSDLIITTGGLGPTKDDLTKE 79 (413)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECC----------CHH-------HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
T ss_conf 2325699999999977981889999389----------899-------99999999974599999908848998445899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781176|r 119 IIAKIA 124 (502)
Q Consensus 119 ~ia~~a 124 (502)
.+|+..
T Consensus 80 ava~~~ 85 (413)
T PRK00549 80 TVAKFL 85 (413)
T ss_pred HHHHHH
T ss_conf 999995
No 203
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=64.32 E-value=9.8 Score=17.36 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCC-EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 386-1799996681479999999858998449998255788551899--7048515542556788888389999999729
Q gi|254781176|r 13 LKP-RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKA--KQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 13 ~~~-~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~--~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
.+| ++.|+|.|-+|-+++......| .+..+++.+...|..... ...+... ..-..
T Consensus 18 v~pa~vvViG~Gv~G~~A~~~A~~lG---a~V~v~D~~~~~l~~~~~~~~~~v~~~-------------------~~~~~ 75 (150)
T pfam01262 18 VPPAKVVVIGGGVVGLGAAATAKGLG---APVTILDVRPERLEQLDSLFAEFVETD-------------------IFSNC 75 (150)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHCCCCCCCH-------------------HHCCH
T ss_conf 76777999898789999999998679---989997299999999998647620016-------------------65379
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHH--HHHHHHHC
Q ss_conf 999997269989999803676667407899--99999864
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPI--IAKIARNK 127 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~--ia~~a~~~ 127 (502)
..|.+.+..+|+|+-++=.-|. -+|. -.+..+.|
T Consensus 76 ~~l~~~i~~aDvvIgavl~pg~----~aP~lIt~~mv~~M 111 (150)
T pfam01262 76 EYLAEAIAEADLVIGTVLIPGA----RAPKLVTREMVKTM 111 (150)
T ss_pred HHHHHHHHHCCEEEEEEECCCC----CCCCEECHHHHHHH
T ss_conf 9999997438799972031788----69922079999844
No 204
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=64.28 E-value=9.8 Score=17.35 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH---HHHHHCCCCC-C
Q ss_conf 31899974467999999888887651665555898787876415865899876148620489999---8875270100-0
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAA---EAAVANPLLD-E 255 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~---~~a~~~pll~-~ 255 (502)
+++.+-|.---.-|.+....|..... .+ ..+.-+|.|+ |+|-..-++=+..++ .+...-|+-. +
T Consensus 197 itlGQef~aya~~l~~~~~rl~~~~~----------~l-~~l~lGGTAV-GTGlna~~~f~~~v~~~L~~~tgl~f~~a~ 264 (471)
T PRK12273 197 MTLGQEFGAFAVALAEDIKRLEEAAE----------LL-REVNLGATAI-GTGINAPPGYAELVVKKLAEITGLPLVPAE 264 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCEECC
T ss_conf 12077899999999999999999999----------98-7536875100-467788820899999999999789964578
Q ss_pred CCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 224--555378999616888899999999999997
Q gi|254781176|r 256 ASM--KGSQGLLISITGGSDLTLFEVDEAATRIRE 288 (502)
Q Consensus 256 ~~~--~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~ 288 (502)
+.+ ...+..++.+.|.-...-..+..+++-||=
T Consensus 265 n~f~a~~~~D~~v~~sg~Lk~lA~~L~KIAnDlRl 299 (471)
T PRK12273 265 DLIEATQDCGAFVEVSGALKRLAVKLSKICNDLRL 299 (471)
T ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999728819999999999999999999988888
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=64.20 E-value=9.9 Score=17.34 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 883899999997299999972-69989999803676667407899999998649--849999504300040678888999
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKG--VLTVGVVTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~--~~~~~~v~~pf~~eg~~r~~~a~~ 152 (502)
+.|. ++++|.+....+.+.+ ++..++|. |+.|||=+...+-||.+.- -..|-|+|.| |.-.+++.|..
T Consensus 83 ~~~~-~~~~~l~~~~~~~~~~~~~~nl~l~-----G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~---el~~~Lk~~~~ 153 (254)
T COG1484 83 FQPG-IDKKALEDLASLVEFFERGENLVLL-----GPPGVGKTHLAIAIGNELLKAGISVLFITAP---DLLSKLKAAFD 153 (254)
T ss_pred CCCH-HHHHHHHHHHHHHHHHCCCCCEEEE-----CCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH---HHHHHHHHHHH
T ss_conf 8855-6699999999999873258828998-----9999879999999999999839849998859---99999999874
Q ss_pred H------HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 9------99999863335450278887413665318999744679999998888876516655558987878764158
Q gi|254781176|r 153 G------IEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNM 224 (502)
Q Consensus 153 ~------~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~ 224 (502)
. |.++-+.+|-||+ ++ ++.....+.....|.+.|.....--..-=+-|.+|.....++...
T Consensus 154 ~~~~~~~l~~~l~~~dlLIi----------DD-lG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~~~~~~~~~~~ 220 (254)
T COG1484 154 EGRLEEKLLRELKKVDLLII----------DD-IGYEPFSQEEADLLFQLISRRYESRSLIITSNLSFGEWDELFGDD 220 (254)
T ss_pred CCCHHHHHHHHHHHCCEEEE----------EC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCC
T ss_conf 55268999988752898998----------23-677668815587999999999973054202058827888660675
No 206
>PRK06153 hypothetical protein; Provisional
Probab=64.02 E-value=4.1 Score=20.14 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=24.9
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCCCEEEEEEEEEC
Q ss_conf 45553789996168888999999999999974168863999853-13465754799998513
Q gi|254781176|r 258 MKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGAT-FDEALEGVIRVSVVATG 318 (502)
Q Consensus 258 ~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~-~d~~~~~~~~v~~iatg 318 (502)
+.|-.-|.|-+--|+.=. .|++++.+.-=|=.++=+|.. .+..|.|.+|||..-.+
T Consensus 264 L~g~~FvFvcvD~G~~r~-----~I~~~L~~~gIpFiDvGmGl~~~~~~L~G~~RvT~~t~~ 320 (393)
T PRK06153 264 LDGVTFVFVCVDKGSSRK-----VIFDYLEALGIPFIDVGMGLELVNGKLGGILRVTLSTPD 320 (393)
T ss_pred HCCCCEEEEEECCCCHHH-----HHHHHHHHCCCCEEECCCCEEEECCEEEEEEEEEECCCC
T ss_conf 439718999944880478-----999999983998687266626536855028999961675
No 207
>TIGR02791 VirB5 P-type DNA transfer protein VirB5; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation . VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE ..
Probab=63.97 E-value=1.8 Score=22.76 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=55.9
Q ss_pred EEEEEECCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 99995043000406------78888999999999863335450278887413665318999744679999998888876-
Q gi|254781176|r 131 TVGVVTKPFHFEGS------RRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDL- 203 (502)
Q Consensus 131 ~~~~v~~pf~~eg~------~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~- 203 (502)
.+++.-+|-.--+. .-..++.+.+..|++-.|.+--==.| ....|+ ..+++++.-++
T Consensus 23 ~~A~ag~PV~D~asilalka~~la~~~~~m~~~k~q~eql~~qi~Q-~k~~y~---------------~~tG~~~mG~~a 86 (233)
T TIGR02791 23 SAAVAGIPVTDQASILALKAKALAQAIEQMAKLKKQYEQLSEQIEQ-AKQQYG---------------SLTGLRGMGDLA 86 (233)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------------HHCCCCCCHHHH
T ss_conf 3037997642699999999999999999999999999999999999-999999---------------843663301289
Q ss_pred --HHCCC---CCCCCHHHH-HHHHCCCCEEEEEE
Q ss_conf --51665---555898787-87641586589987
Q gi|254781176|r 204 --MIKEG---LINLDFADV-RSVMRNMGRAMMGT 231 (502)
Q Consensus 204 --i~~~g---~in~df~d~-~~v~~~~g~a~~g~ 231 (502)
++.|- +.--||.|| .+||+.+|.++||-
T Consensus 87 evlNdPalR~~LP~dw~~~Y~~~~sggy~g~~G~ 120 (233)
T TIGR02791 87 EVLNDPALRKYLPADWAAIYEGVLSGGYTGVVGD 120 (233)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCH
T ss_conf 8725867888716639999999871784001030
No 208
>PRK06382 threonine dehydratase; Provisional
Probab=63.97 E-value=5.3 Score=19.36 Aligned_cols=52 Identities=33% Similarity=0.433 Sum_probs=29.4
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 999972699899998036766674078999999986498499995043000406788889
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVA 150 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a 150 (502)
||.+-+.+.|.||+-.| |||.-+|.+-.+..+. -.+-++|| -| ||.--|..+
T Consensus 160 EIleq~pd~D~vvvpvG-GGGLisGia~a~K~~~--P~ikViGV--Ep---e~a~~~~~s 211 (400)
T PRK06382 160 EIMEDLPDLDQIIVPVG-GGGLISGIALAAKHIN--PNVKIIGI--ES---ELSDSMKAS 211 (400)
T ss_pred HHHHHCCCCCEEEEECC-CCHHHHHHHHHHHHHC--CCCEEEEE--CC---CCCHHHHHH
T ss_conf 99986689998999368-7158899999999859--99759997--96---898789999
No 209
>PRK12338 hypothetical protein; Provisional
Probab=63.91 E-value=6.1 Score=18.90 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=20.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 6766674078999999986498499
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
+||.+|+|-+.+-+.+|..+||-+|
T Consensus 9 iGGtSGvGKSTlAseLAsRLgI~tv 33 (320)
T PRK12338 9 IGSASGIGKSTIASEVARRLNIKHL 33 (320)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 7068887688899999985198711
No 210
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=63.87 E-value=10 Score=17.30 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=35.4
Q ss_pred HHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEEC
Q ss_conf 5438617999966814799999998589984499982557885518997048515
Q gi|254781176|r 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLG 65 (502)
Q Consensus 11 ~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g 65 (502)
+..+-|+.|+|.||-|+-+..++...|+.. +..++-|.-.+. .....++..
T Consensus 27 ~l~~s~vlvvG~GglG~~~~~~la~aGvg~--l~i~D~d~v~~s--nL~rq~~~~ 77 (254)
T COG0476 27 KLKDSRVLVVGAGGLGSPAAKYLALAGVGK--LTIVDFDTVELS--NLQRQFLFT 77 (254)
T ss_pred HHHHCEEEEECCCCCCCHHHHHHHHCCCCE--EEEEECCEEEEC--CCCCEEECC
T ss_conf 776482899777633519999999826985--999858857700--156503033
No 211
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=63.61 E-value=10 Score=17.27 Aligned_cols=98 Identities=24% Similarity=0.403 Sum_probs=69.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518--9970485155425567888883899999997299999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS--KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~--~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
||.|+|.|--|......|... +.+.+.++.|.+.|.+. ..+.+... |-|.+|++=++|
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e---~~dV~vID~d~~~~~~~~~~lDv~~i~--------Gd~~~~~~L~~A--------- 61 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGE---NNDVTVIDTDEERLRRLQDRLDVRTVV--------GNGSHPDVLREA--------- 61 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHCCEEEEE--------ECCCCHHHHHHC---------
T ss_conf 799999888999999999868---997999989999999988625868999--------668999999965---------
Q ss_pred HHHCCCCEEEEEECCCCCCCCC-HHHHHHHHHHHC-CC-EEEEEEECCCC
Q ss_conf 9726998999980367666740-789999999864-98-49999504300
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTG-AAPIIAKIARNK-GV-LTVGVVTKPFH 140 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg-~~p~ia~~a~~~-~~-~~~~~v~~pf~ 140 (502)
-++.+|+++-+ |+.- .--+++.+||++ |+ -||+-|.-|-.
T Consensus 62 -gi~~ad~~IAv------T~~De~Nli~~~lAk~l~g~~~tIaRv~n~ey 104 (455)
T PRK09496 62 -GAEDADMLIAV------TDSDETNMVACQIAKSLFGTPTKIARIRNPEY 104 (455)
T ss_pred -CCCCCCEEEEE------CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf -99869999995------79718999999999986699824999747776
No 212
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=63.54 E-value=7.2 Score=18.37 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHC------------------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7666740789999999864------------------98499995043000406788889999999998633354
Q gi|254781176|r 109 GGGTGTGAAPIIAKIARNK------------------GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLI 165 (502)
Q Consensus 109 gggtgtg~~p~ia~~a~~~------------------~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i 165 (502)
+||||||.+-.+.-+.... ..-+|...|.|-+.||........-=-..|+..-|-+|
T Consensus 179 sGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIi 253 (355)
T COG4962 179 SGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRII 253 (355)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHCCCCCEE
T ss_conf 678788799999999715797650899812366446998557886348877776558899999987532865368
No 213
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=63.52 E-value=10 Score=17.26 Aligned_cols=117 Identities=26% Similarity=0.346 Sum_probs=65.3
Q ss_pred CEEEEEEECCCHHHH-HHHHHH-CCCC--CCEEEEEC-CCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 617999966814799-999998-5899--84499982-55788551899704851554255678888838999999----
Q gi|254781176|r 15 PRITVFGVGGGGGNA-VNNMVS-SGLQ--GVNFVVAN-TDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA---- 85 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~-~~~~~~-~~~~--~~~~~~~n-td~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a---- 85 (502)
.=+.|-|||..|.=+ |-+.++ ..-+ +|..+||= .++-.|+.--|-..|.-|++--.|.|||==|++=-..-
T Consensus 168 ~D~FVaG~GTGGTITGvG~~LK~~~pkG~~~~~~AVEP~~SPVLSggLAG~~ikpGpHKIQGiGAGFIP~~Ln~~v~D~v 247 (312)
T TIGR01139 168 LDAFVAGVGTGGTITGVGEVLKEKKPKGKDIKIVAVEPAESPVLSGGLAGEEIKPGPHKIQGIGAGFIPKVLNRSVIDEV 247 (312)
T ss_pred EEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 11799732368515478998740078995589998727743134433300102669496412797872633684136214
Q ss_pred -----HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf -----9729999997269989999803676667407899999998649849999
Q gi|254781176|r 86 -----EECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 86 -----~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
+|.++-=|++-+-= =|.+|+-.|---=||--|||-..-.|.++|++
T Consensus 248 i~V~~EeAi~~ARrLA~eE---GiL~GISSGA~vaAAl~~Ak~~~n~dK~iV~i 298 (312)
T TIGR01139 248 ITVSDEEAIETARRLAKEE---GILVGISSGAAVAAALKLAKRLENPDKLIVVI 298 (312)
T ss_pred EECCCHHHHHHHHHHHHHC---CEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7407556899999999867---80101557899999999987324889889998
No 214
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.16 E-value=10 Score=17.21 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=56.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH--HHHHHCCCCEEEEECCCCCC----------CCCC-CCCHHHH
Q ss_conf 617999966814799999998589984499982557--88551899704851554255----------6788-8883899
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA--QALMMSKAKQIIQLGSGITE----------GLGA-GSHPEVG 81 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~--~~l~~~~~~~~~~~g~~~~~----------g~g~-g~~~~~g 81 (502)
-||.|+|.|..|-.++..+.+.+.. +.+...++.. ...........+..|..-.. --|- -.+|.+-
T Consensus 8 KkvlV~GlG~sG~s~a~~L~~~~~~-~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKTQPQ-LTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 7499990678589999999966998-469996398893688762069769727889678368999998997699898999
Q ss_pred HHHHH----HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC--EEEEEEECCC
Q ss_conf 99999----7299999972699899998036766674078999999986498--4999950430
Q gi|254781176|r 82 RAAAE----ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV--LTVGVVTKPF 139 (502)
Q Consensus 82 ~~~a~----~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~--~~~~~v~~pf 139 (502)
+.... -+.-++-....... ++-++|--|.|-|- -.|+.+.+..|. .+.|=+-.|+
T Consensus 87 ~a~~~~i~i~~eiel~~~~~~~~-iIaVTGTnGKTTTt--sli~~iL~~~g~~~~~gGNiG~p~ 147 (438)
T PRK04663 87 PVLAKGIPVVGDIELFAWAVDKP-VIAITGSNGKSTVT--DLTGVMAKAAGVKVAVGGNIGVPA 147 (438)
T ss_pred HHHHCCCCEECHHHHHHHHCCCC-EEEEECCCCHHHHH--HHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 99986993703889997645897-89994899828999--999999982899706872157168
No 215
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=62.25 E-value=11 Score=17.10 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCEEEEEECCCCCCCC-CHHHHHHHHHHHC--CCEEEEEEE----------CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899998036766674-0789999999864--984999950----------4300040678888999999999863335
Q gi|254781176|r 98 KTHMCFVTAGMGGGTGT-GAAPIIAKIARNK--GVLTVGVVT----------KPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 98 ~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~--~~~~~~~v~----------~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
+-|.+|++ ||-|| ..|.-+++.+++. ++-+|+|-- .-|-|. --...|.+.|.+|...+-+.
T Consensus 112 gId~L~~I----GGDgS~~~A~~La~~~~~~~~~i~VVGIPKTIDNDl~~tD~TfGF~--TAv~~a~~aid~l~~tA~S~ 185 (403)
T PRK06555 112 GVDILHTI----GGDDTNTTAADLAAYLAANGYDLTVVGLPKTIDNDVVPIRQSLGAW--TAAEQGARFFDNVVNEQSAA 185 (403)
T ss_pred CCCEEEEE----CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998----8805999999999999973999528961455217887768886858--89999999999999887516
Q ss_pred HHHHHHHHH-HHCCCCCHHHHHHH-HH-H----------HHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHCCCCEE
Q ss_conf 450278887-41366531899974-46-7----------999999888887651665555898----7878764158658
Q gi|254781176|r 165 IVIPNQNLF-RIANDKTTFADAFS-MA-D----------QVLYSGVSCITDLMIKEGLINLDF----ADVRSVMRNMGRA 227 (502)
Q Consensus 165 i~i~n~~l~-~~~~~~~~~~~af~-~~-d----------~~l~~~v~~i~~~i~~~g~in~df----~d~~~v~~~~g~a 227 (502)
++--.+ ++.+...+|.-+.+ +| - +++...-.+=++.+..|= +..|+ .-++.+|...|.+
T Consensus 186 ---~r~~~vvEvMGR~aGwIA~~aa~A~~~~~~~~~~~~~~~~~~~~~~v~~iliPE-~~f~l~~~~~~l~~~~~~~~~~ 261 (403)
T PRK06555 186 ---PRMLVIHEVMGRNCGWLTAATARAYRQRLSRNEYVPGLMMDAELKDIDAVYLPE-MAFDLEAEAARLKAVMDRTGCV 261 (403)
T ss_pred ---CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCE
T ss_conf ---776999995177855899999987553301200131000110037888898007-8536054799999999747985
Q ss_pred EEEEEECCCCCH
Q ss_conf 998761486204
Q gi|254781176|r 228 MMGTGEASGHGR 239 (502)
Q Consensus 228 ~~g~g~~~g~~r 239 (502)
++-+.|+.|.+-
T Consensus 262 vIvvaEGAg~~~ 273 (403)
T PRK06555 262 TIFVSEGAGLDA 273 (403)
T ss_pred EEEEECCCCCHH
T ss_conf 899833667304
No 216
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=62.25 E-value=11 Score=17.10 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 2999999726998999980367666740789999999
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIA 124 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a 124 (502)
=.+.++.+++.+|+||+|.|+|-.---=-..+||+..
T Consensus 48 I~~al~~~~~~~d~vi~tGGlGPT~DDiT~eavA~a~ 84 (170)
T cd00885 48 IAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999999974199999947877899853899999994
No 217
>PTZ00301 uridine kinase; Provisional
Probab=61.74 E-value=8.3 Score=17.88 Aligned_cols=39 Identities=23% Similarity=0.624 Sum_probs=28.3
Q ss_pred EECCCCCCCCCHHHHHHHHHHHC----CCEEEEEEECCCCCCC
Q ss_conf 80367666740789999999864----9849999504300040
Q gi|254781176|r 105 TAGMGGGTGTGAAPIIAKIARNK----GVLTVGVVTKPFHFEG 143 (502)
Q Consensus 105 ~ag~gggtgtg~~p~ia~~a~~~----~~~~~~~v~~pf~~eg 143 (502)
+-|..||+|+|=+-+-.++++++ |...|+++.+=+.|..
T Consensus 5 iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d 47 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 9999688767899999999999876149980799836766778
No 218
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=61.45 E-value=11 Score=17.00 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=94.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCC-CCCEEEEECCC-HHHHHHC----------------CCCEEEEECCCCCCCCCCCC
Q ss_conf 617999966814799999998589-98449998255-7885518----------------99704851554255678888
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGL-QGVNFVVANTD-AQALMMS----------------KAKQIIQLGSGITEGLGAGS 76 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~ntd-~~~l~~~----------------~~~~~~~~g~~~~~g~g~g~ 76 (502)
-||.+||.|..|.-.+..+++.+. ..-+.++.+.+ ...+... .....|.|..+
T Consensus 2 ~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIilaVK--------- 72 (275)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVITPEEIILYSRSENEHFKQLYDKYPTVALASNEELFTKCDHSFICVP--------- 72 (275)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEEC---------
T ss_conf 88999867899999999999789999636999789938999999987495363777999854998999978---------
Q ss_pred CHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE--EE--EEEECCCCCCCHHHHHHHH
Q ss_conf 838999999972999999726-998999980367666740789999999864984--99--9950430004067888899
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL--TV--GVVTKPFHFEGSRRMRVAE 151 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~--~~--~~v~~pf~~eg~~r~~~a~ 151 (502)
|. ...+-.++|...+. +.-+|=|+||.-=.+=.-..| .++.|-|-=+ .| |+..+-|. ..-...-.
T Consensus 73 -P~----~~~~vl~~i~~~~~~~~~iISi~AGi~i~~l~~~~~--~~vvRvMPNtpa~vg~Gvt~~~~~---~~~~~~~~ 142 (275)
T PRK06928 73 -PL----AVLPLMKDCAPVLTPDRHVVSIAAGVSLDDLLEITP--GQVSRLIPSLTSAVGVGTSLVAHA---ETVAEENK 142 (275)
T ss_pred -HH----HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEECCCCHHHCCCEEEEECC---CCCCHHHH
T ss_conf -58----799999997653279968999569998999997579--983797137327767842899628---98999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--------HHHHHH------------HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999986333545027888741366531--------899974------------467999999888887651665555
Q gi|254781176|r 152 SGIEALQETVDTLIVIPNQNLFRIANDKTT--------FADAFS------------MADQVLYSGVSCITDLMIKEGLIN 211 (502)
Q Consensus 152 ~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~--------~~~af~------------~~d~~l~~~v~~i~~~i~~~g~in 211 (502)
+-+.+|-..+-.++.++-+ .++.+-.-.+ |.++|. .|-++..+.+.|-+.++...+
T Consensus 143 ~~v~~lf~~~G~v~~v~E~-~~d~~TalsGSGPAyv~~~~eal~~a~v~~~gl~~~~A~~l~~~t~~Gaa~ll~~~~--- 218 (275)
T PRK06928 143 SRLEELLSAFSHVMTIREE-NMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEKD--- 218 (275)
T ss_pred HHHHHHHHHCCCEEEECHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_conf 9999999857971330589-988999883639999999999999999996799999999999999999999998639---
Q ss_pred CCHHHHH-HHHCCCCEEEEEE
Q ss_conf 8987878-7641586589987
Q gi|254781176|r 212 LDFADVR-SVMRNMGRAMMGT 231 (502)
Q Consensus 212 ~df~d~~-~v~~~~g~a~~g~ 231 (502)
.++++++ .|.+-+|.+.-|+
T Consensus 219 ~~~~~L~~~V~SPgGTT~aGl 239 (275)
T PRK06928 219 YTFAGTIDRVATKGGITAEGA 239 (275)
T ss_pred CCHHHHHHHCCCCCCHHHHHH
T ss_conf 799999981879880699999
No 219
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.36 E-value=4.9 Score=19.56 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=42.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
+|.|||-|--|.-..-.....| .+..+.+.+..++.+...-.+-.+..-...|+-.+..++ + ......+.++
T Consensus 9 ~VaVIGaG~MG~giAa~~a~~G---~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~--~---l~~~~~l~~a 80 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPA--R---LRFVATIEAC 80 (321)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--H---HHCCCCHHHH
T ss_conf 7999888788899999999479---859999698889999999999999999866899631696--5---0146888998
Q ss_pred HCCCCEEE
Q ss_conf 26998999
Q gi|254781176|r 96 LDKTHMCF 103 (502)
Q Consensus 96 ~~~~~~~~ 103 (502)
+.++|+|+
T Consensus 81 v~~aD~Vi 88 (321)
T PRK07066 81 VADADFIQ 88 (321)
T ss_pred HCCCCEEE
T ss_conf 63599899
No 220
>TIGR00045 TIGR00045 glycerate kinase; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP.; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation.
Probab=60.51 E-value=11 Score=16.89 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=78.2
Q ss_pred EEEECCCCCCCCCCCCCHHHHH--HHH-----------HHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCHHHH-HHHHHH
Q ss_conf 4851554255678888838999--999-----------9729999997269989999803-676667407899-999998
Q gi|254781176|r 61 IIQLGSGITEGLGAGSHPEVGR--AAA-----------EECIDEITEMLDKTHMCFVTAG-MGGGTGTGAAPI-IAKIAR 125 (502)
Q Consensus 61 ~~~~g~~~~~g~g~g~~~~~g~--~~a-----------~~~~~~i~~~~~~~~~~~~~ag-~gggtgtg~~p~-ia~~a~ 125 (502)
+-.+|..+...-|+|+---+|. .++ .-..-.+.+.+.++|+|+.--| |---|=-|-+|+ ||+.||
T Consensus 237 ~~~~g~~~~~~pG~GaaGG~g~~l~afl~a~l~pG~~~~~~~~~~~~~~~~adlv~tGeG~~D~q~~~Gk~P~gva~~a~ 316 (380)
T TIGR00045 237 KRALGKDVNTIPGAGAAGGLGAGLLAFLGARLKPGIELVLELLNLEEKLKDADLVITGEGRLDSQSLFGKAPVGVAKVAK 316 (380)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 78616410026787642016899999845734431878875741787750156778627752321335762278998877
Q ss_pred HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 6498499995043000406788889999999998633354502788874136653189997-446799999988888765
Q gi|254781176|r 126 NKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAF-SMADQVLYSGVSCITDLM 204 (502)
Q Consensus 126 ~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af-~~~d~~l~~~v~~i~~~i 204 (502)
..++-+++++-.-- ++...+.++ --+..|.+...-.++.++| +.+..-|.+..+.|..++
T Consensus 317 ~~~~Pv~~~aG~l~------------~~~~~~~~~-------g~~a~f~~~~~~~~L~~~~p~~~~~~l~~~~~~~~~~~ 377 (380)
T TIGR00045 317 KYGVPVIAIAGSLG------------DGVDVLPQH-------GIDAAFSILPSPMPLEEALPANAEDNLERTAENIARLL 377 (380)
T ss_pred HHCCCEEEEECCCC------------CCHHHHHHC-------CCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 61897799822200------------220235560-------63012203677777677511570678999999999885
Q ss_pred H
Q ss_conf 1
Q gi|254781176|r 205 I 205 (502)
Q Consensus 205 ~ 205 (502)
.
T Consensus 378 ~ 378 (380)
T TIGR00045 378 L 378 (380)
T ss_pred C
T ss_conf 0
No 221
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=60.19 E-value=12 Score=16.85 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=74.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEE-EEECC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704-85155-42556788888389999999729999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQI-IQLGS-GITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~-~~~g~-~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
-+|.|||.|-.-.=+..-.++.|= .++.| |+.++ -+..|--|++.-|.=+-.+.--.+
T Consensus 39 g~i~~FG~GHShm~aeEv~yRAGG------------------La~~~pIL~~plMLhega~ass~lErieg~~~~~l~-- 98 (243)
T COG4821 39 GRIYVFGSGHSHMLAEEVFYRAGG------------------LAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLH-- 98 (243)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------------------CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 879996486288999999864378------------------001132147716521352100045765317777899--
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 997269989999803676667407899-99999864984999950430004067888899999999986333545027--
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPI-IAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPN-- 169 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~-ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n-- 169 (502)
+.-++.-|++|++.--|-.+ .|| +|+++|+.|+.++++-.+-.+---..|.+-. +.|-.++|- |++|
T Consensus 99 ~~~i~~~DVliviSnSGrNp----vpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SG----K~Ly~~aDv--VlDN~a 168 (243)
T COG4821 99 RLQIRPNDVLIVISNSGRNP----VPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSG----KLLYEFADV--VLDNGA 168 (243)
T ss_pred HHCCCCCCEEEEEECCCCCC----CCHHHHHHHHHCCCEEEEEEHHHHHHHCHHCCCCH----HHHHHHCCE--EEECCC
T ss_conf 96688788899980799898----44389999986597699985454323111015415----677652105--651798
Q ss_pred ---HHHHHHCCC
Q ss_conf ---888741366
Q gi|254781176|r 170 ---QNLFRIAND 178 (502)
Q Consensus 170 ---~~l~~~~~~ 178 (502)
|-.|++++-
T Consensus 169 v~GDAvl~~a~~ 180 (243)
T COG4821 169 VKGDAVLEIAGS 180 (243)
T ss_pred CCCCHHEEECCC
T ss_conf 666210135474
No 222
>PRK08617 acetolactate synthase; Reviewed
Probab=60.12 E-value=12 Score=16.84 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=15.7
Q ss_pred HHHHCCCCEEEEEEEECCCCCHHH---HHHHHHHHCCCCC
Q ss_conf 876415865899876148620489---9998875270100
Q gi|254781176|r 218 RSVMRNMGRAMMGTGEASGHGRGI---QAAEAAVANPLLD 254 (502)
Q Consensus 218 ~~v~~~~g~a~~g~g~~~g~~r~~---~a~~~a~~~pll~ 254 (502)
-..|+.+-+-++=.|.+-...++. ...-..+.-|++.
T Consensus 195 ~~~L~~AkrPvii~G~g~~~~~~~~~l~~lae~~~iPv~t 234 (552)
T PRK08617 195 AELIKNAKLPVLLLGMRASDPEVTAAIRRLLERTNLPVVE 234 (552)
T ss_pred HHHHHHCCCCEEEECHHHCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999846587488322233364999999988874984884
No 223
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=59.84 E-value=12 Score=16.81 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=29.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 1799996681479999999858998449998255788551
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM 55 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~ 55 (502)
||.|+|.|.-|+=.--+|.+.|. .|.|++=..-.+++.+
T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~-~V~lv~r~~~~~~i~~ 40 (306)
T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGR-DVTFLGRSARAEALRE 40 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHH
T ss_conf 89999924999999999983699-8899970009999997
No 224
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=59.60 E-value=8.6 Score=17.77 Aligned_cols=85 Identities=25% Similarity=0.272 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE-CCCCCC-CH------HHH
Q ss_conf 8838999999972999999726998999980367666740789999999864984999950-430004-06------788
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVT-KPFHFE-GS------RRM 147 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~-~pf~~e-g~------~r~ 147 (502)
-.++-=++.|.+--.+|.+. | .+.++ |-|+|+=-.+++-|++.|.++||+.. +|+.-| -. ...
T Consensus 27 ~~~~~~~~~A~~lg~~la~~--g--~~V~t-----GG~~GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~ 97 (205)
T COG1611 27 IEPEEYYELARELGRELAKR--G--LLVIT-----GGGPGVMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITG 97 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHC--C--CEEEE-----CCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCEEEEC
T ss_conf 89889999999999999767--9--88996-----986525057889998769838996578602105686555145532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999986333545027
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPN 169 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n 169 (502)
..=.+=...+-+++|++|++|-
T Consensus 98 ~~~~~Rk~~~~~~ada~I~~pG 119 (205)
T COG1611 98 MDFAERKRAMVRSADAFIVLPG 119 (205)
T ss_pred CCHHHHHHHHHHHCCEEEEECC
T ss_conf 8899999999986798999188
No 225
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=59.54 E-value=12 Score=16.77 Aligned_cols=95 Identities=24% Similarity=0.329 Sum_probs=69.7
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 38617999966814799999998589-98449998255788551899704851554255678888838999999972999
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGL-QGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
-|.|+.|||-|.-|...+-++.+... +-+-|+.+|-++.-|.+-.. +|...|. +..+-
T Consensus 3 ~k~~vAIiGsGnIGtDLm~Ki~Rs~~le~~~~vG~dp~S~GL~rA~~-----lGv~ts~----------------~GId~ 61 (298)
T PRK08300 3 SKIKVAIIGSGNIGTDLMIKILRSPHLEPVAMVGIDPESDGLARARR-----LGVATTA----------------EGIDG 61 (298)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH-----CCCCCCC----------------CCHHH
T ss_conf 75349998888338999999865776106999805989849999998-----4996637----------------67999
Q ss_pred HHHHH--CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 99972--69989999803676667407899999998649849999
Q gi|254781176|r 92 ITEML--DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 92 i~~~~--~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
+...- .+.|+||= -|.-++-..-++..++.|++.|-.
T Consensus 62 ll~~~~~~~idiVFD------ATSA~aH~~h~~~l~~~g~~~IDL 100 (298)
T PRK08300 62 LLAHPEFDDIDIVFD------ATSAGAHVENAAKLRELGVRVIDL 100 (298)
T ss_pred HHHCCCCCCCCEEEE------CCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 961833568788997------898066899999999739879967
No 226
>PRK09947 hypothetical protein; Provisional
Probab=59.44 E-value=12 Score=16.76 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=59.3
Q ss_pred ECCCCCCCC--CH--HHHHHHHHHHC---CCEEE--EEEECCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_conf 036766674--07--89999999864---98499--995043000406788889999999998---63335450278887
Q gi|254781176|r 106 AGMGGGTGT--GA--APIIAKIARNK---GVLTV--GVVTKPFHFEGSRRMRVAESGIEALQE---TVDTLIVIPNQNLF 173 (502)
Q Consensus 106 ag~gggtgt--g~--~p~ia~~a~~~---~~~~~--~~v~~pf~~eg~~r~~~a~~~~~~l~~---~~d~~i~i~n~~l~ 173 (502)
-||++++++ -+ +-++|+.-|.. |-|+. -+.--||+.+-. .. -.-+.+|++ +.|-.-+--+.-++
T Consensus 26 ~~~~~~~~~~~~~~~~~ila~~IRq~S~~gql~a~~~~l~~pysl~ee-~l---~~ll~~l~~~e~~~DI~~~~gs~~~Y 101 (214)
T PRK09947 26 QGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEE-EL---SVLLESLKQNGDYADIACMTGSQDDY 101 (214)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHH-HH---HHHHHHHHHCCCCCCEEEECCCCCCE
T ss_conf 970585445689986899999998624100035876613898657999-99---99999997156345424431687623
Q ss_pred HHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHH-------HCCC------------------------CCCCCHHHHHHH
Q ss_conf 413665318999744--6799999988888765-------1665------------------------555898787876
Q gi|254781176|r 174 RIANDKTTFADAFSM--ADQVLYSGVSCITDLM-------IKEG------------------------LINLDFADVRSV 220 (502)
Q Consensus 174 ~~~~~~~~~~~af~~--~d~~l~~~v~~i~~~i-------~~~g------------------------~in~df~d~~~v 220 (502)
- |.. .++.+-|+. +--+-...-+.|++.. -+|. ..+=||+|+++|
T Consensus 102 ~-YS~-~~mtdNYA~m~~~v~~~DiC~aiAe~VRfecrtYPRP~~v~mf~~~Pf~~~~~~Ie~aL~aM~~hPef~DI~~v 179 (214)
T PRK09947 102 Y-YST-QAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAALAAMDVAPEYADIRQV 179 (214)
T ss_pred E-ECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 6-325-31406899999999987799999999987233589964558870698889988999999999839872117887
Q ss_pred HCCCCEE------EEEEEECCC
Q ss_conf 4158658------998761486
Q gi|254781176|r 221 MRNMGRA------MMGTGEASG 236 (502)
Q Consensus 221 ~~~~g~a------~~g~g~~~g 236 (502)
..+.|.. .|-+|.|.|
T Consensus 180 ~ssn~~~YLfS~~~MsygkA~g 201 (214)
T PRK09947 180 ESSNAVLYLFSERFMTYGKAYG 201 (214)
T ss_pred HCCCCCEEEEHHHHHHCCHHHH
T ss_conf 4158945632487763020310
No 227
>PRK08233 hypothetical protein; Provisional
Probab=59.27 E-value=8.7 Score=17.73 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=17.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8036766674078999999986498
Q gi|254781176|r 105 TAGMGGGTGTGAAPIIAKIARNKGV 129 (502)
Q Consensus 105 ~ag~gggtgtg~~p~ia~~a~~~~~ 129 (502)
+-|..||||+|=+-+.-++.++++-
T Consensus 5 IIgIaGgSgSGKTtla~~l~~~l~~ 29 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999688867899999999997467
No 228
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=59.19 E-value=7.5 Score=18.20 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHH-HHHCCCEEEEEEECCCC--CCCH--HHHHHHHHHHH
Q ss_conf 66674078999999-98649849999504300--0406--78888999999
Q gi|254781176|r 110 GGTGTGAAPIIAKI-ARNKGVLTVGVVTKPFH--FEGS--RRMRVAESGIE 155 (502)
Q Consensus 110 ggtgtg~~p~ia~~-a~~~~~~~~~~v~~pf~--~eg~--~r~~~a~~~~~ 155 (502)
-|+-||++|-||+. -|.|||--|--+.+||- .=|. +|..-+..|+-
T Consensus 52 DGkv~G~~PdvA~aifK~lGi~dVn~~~te~G~lIPGL~AgRfDaiaAg~~ 102 (285)
T TIGR02995 52 DGKVAGAAPDVARAIFKRLGIKDVNASVTEYGALIPGLKAGRFDAIAAGLF 102 (285)
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 853136855789999985481100000356403145410102568861157
No 229
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.78 E-value=3.7 Score=20.48 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=44.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH---HHHHH
Q ss_conf 179999668147999999985899844999825578855189970485155425567888883899999997---29999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE---CIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~---~~~~i 92 (502)
||.|+|-|-.|+-..-.....|+ +.+.++.+.+.|.+......-.+...+.+|.=... .+.++.. ....+
T Consensus 4 kV~ViGaG~MG~~IA~~~a~~G~---~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~dl 76 (289)
T PRK09260 4 KIVVVGAGVMGRGIAYVFASSGF---QTTLVDISQEQLASAQQEIESILEDGVALGKVTEA----AAQAALARLSYSLDL 76 (289)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHCCCCCCCH
T ss_conf 69997968878999999996899---88999799899999999999999999871799989----999999558766888
Q ss_pred HHHHCCCCEEEE
Q ss_conf 997269989999
Q gi|254781176|r 93 TEMLDKTHMCFV 104 (502)
Q Consensus 93 ~~~~~~~~~~~~ 104 (502)
.+++.++|+|+=
T Consensus 77 ~~a~~~aDlViE 88 (289)
T PRK09260 77 KEAVAGADLLIE 88 (289)
T ss_pred HHHHCCCCEEEE
T ss_conf 998476999998
No 230
>PRK06110 hypothetical protein; Provisional
Probab=58.71 E-value=12 Score=16.67 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=6.6
Q ss_pred HHHHHHHCCCEEEEE
Q ss_conf 999998649849999
Q gi|254781176|r 120 IAKIARNKGVLTVGV 134 (502)
Q Consensus 120 ia~~a~~~~~~~~~~ 134 (502)
+|..|+.+|+-.+-|
T Consensus 85 vA~aA~~~G~~~~I~ 99 (321)
T PRK06110 85 LAFAARRHGLAATIV 99 (321)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999939817997
No 231
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=58.51 E-value=12 Score=16.65 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=63.0
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCH-----------------H
Q ss_conf 79999668147999999985899844999825578855189970485155425567888883-----------------8
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHP-----------------E 79 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~-----------------~ 79 (502)
..|||=|=||.-+--+.-+.|.+ |-.++- -.-+|.-|.-..-+ ||.- ..|-. =.+| .
T Consensus 5 vlVIGgGLAGl~aAl~~a~~G~~-v~lvs~--GqgaL~fsSGsiDl-Lg~~-P~g~~-v~~P~~a~~~L~~~~p~HPY~~ 78 (425)
T PRK05329 5 VVVIGGGLAGLTCALALAEAGKR-CAIVAK--GQSALHFSSGSLDL-LGYL-PDGQP-VSDPFEALESLAQQAPEHPYSK 78 (425)
T ss_pred EEEECCCHHHHHHHHHHHHCCCE-EEEEEC--CCCEEEEECCCHHH-CCCC-CCCCC-CCCHHHHHHHHHHHCCCCCCHH
T ss_conf 89999529999999999977993-899927--84320021444222-1338-89986-7798999998774076899033
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---------EEEEEECCCCCCCCCHHHHHHH----HHHHCCCEEEEEEECCCCCCCHHH
Q ss_conf 999999972999999726998---------9999803676667407899999----998649849999504300040678
Q gi|254781176|r 80 VGRAAAEECIDEITEMLDKTH---------MCFVTAGMGGGTGTGAAPIIAK----IARNKGVLTVGVVTKPFHFEGSRR 146 (502)
Q Consensus 80 ~g~~~a~~~~~~i~~~~~~~~---------~~~~~ag~gggtgtg~~p~ia~----~a~~~~~~~~~~v~~pf~~eg~~r 146 (502)
+|...-.+..+..+.+++... =.++..-||.=--|--.|.-.. ......+++|+| ||- |
T Consensus 79 vG~~~v~~~~~~~~~ll~~~gl~l~g~~~~N~~~~TplGtlkpT~L~p~s~~~~~~~~~~~~i~vvgi-------~G~-~ 150 (425)
T PRK05329 79 LGPDAVLELLQQFQALLEAAGLPLVGSVEQNHLRVTPLGTLRPTWLSPPSVPVGPELLPAKRILVVGI-------EGL-R 150 (425)
T ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEEEC-------CCC-C
T ss_conf 07899999999999999971986437876664523565555412137632115555566675799966-------635-6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8889999999998
Q gi|254781176|r 147 MRVAESGIEALQE 159 (502)
Q Consensus 147 ~~~a~~~~~~l~~ 159 (502)
--++.--...|++
T Consensus 151 DF~p~l~a~~L~~ 163 (425)
T PRK05329 151 DFQPHLAAANLKR 163 (425)
T ss_pred CCCHHHHHHHHHH
T ss_conf 7899999999974
No 232
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=58.43 E-value=9.8 Score=17.36 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8617999966814799999998589984499982557885518--99704851554255678888838999999972999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS--KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~--~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
..++.|+|-||++--++-.+...|...+.. +|-+.+..... ....+. .... ...
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i--~nR~~~r~~~l~~~~~~~~-~~~~---------------------~~~ 74 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVI--VNRTLEKAKALAERFGELG-IAIA---------------------YLD 74 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHCC-CCEE---------------------ECC
T ss_conf 999999867589999999999719982288--6089999999999850136-6401---------------------045
Q ss_pred HHHHHCCCCEEEEEECCC--CCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 999726998999980367--6667407899999998649849999504300
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMG--GGTGTGAAPIIAKIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~g--ggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~ 140 (502)
+.+.+...|+|+=|.=+| +.. ..|+- ...-..+.+.+=++-.|..
T Consensus 75 ~~~~~~~~dliIN~tp~G~~~~~---~~p~~-~~~~~~~~~~~D~iY~P~~ 121 (155)
T cd01065 75 LEELLAEADLIINTTPVGMKPGD---ELPLP-PSLLKPGGVVYDVVYNPLE 121 (155)
T ss_pred HHHHHCCCCEEEECCCCCCCCCC---CCCCC-HHHCCCCCEEEECCCCCCC
T ss_conf 34431568879876778777877---67678-8775998689865317878
No 233
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=58.31 E-value=3.9 Score=20.32 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=54.9
Q ss_pred EEEEEEECCCH-HHHHHHHHH--CCCCCCEEEEECCC-HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 17999966814-799999998--58998449998255-788551899704851554255678888838999999972999
Q gi|254781176|r 16 RITVFGVGGGG-GNAVNNMVS--SGLQGVNFVVANTD-AQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE 91 (502)
Q Consensus 16 ~i~v~g~gg~g-~n~~~~~~~--~~~~~~~~~~~ntd-~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~ 91 (502)
||.+||=|++= ...+..++. ..+.+-+++-++.| ...|..+..-.+-.. +-+|+ + .-.+.-..
T Consensus 2 KI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~-----~~~~~--~------~~v~~ttd 68 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMV-----KKAGL--P------IKVHLTTD 68 (419)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH-----HHHCC--C------EEEEEECC
T ss_conf 79998974665589999998454348988899989985999999999999999-----96099--8------08999679
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99972699899998036766674078999999986498
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~ 129 (502)
.+++|+|+|.||.+---|| .-+--.=-+|..+.|+
T Consensus 69 ~~eAl~gADfVi~~irvGg---~~~r~~De~Ip~kyGv 103 (419)
T cd05296 69 RREALEGADFVFTQIRVGG---LEARALDERIPLKHGV 103 (419)
T ss_pred HHHHHCCCCEEEEEEEECC---CCHHHHHHHHHHHCCC
T ss_conf 9998369999999873379---3076776543876497
No 234
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=57.98 E-value=5.5 Score=19.22 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 1799996681479999999858998449998255788551
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM 55 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~ 55 (502)
||.|||-|-.|+...-.+...|++ | ...+.+...|.+
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~~-V--~l~D~~~~~l~~ 37 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGLE-V--VLVDISEEALEK 37 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCE-E--EEEECCHHHHHH
T ss_conf 989999788999999999967993-9--999799899999
No 235
>KOG1252 consensus
Probab=57.94 E-value=7.5 Score=18.24 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=14.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 367666740789999999864984999950430004067888
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMR 148 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~ 148 (502)
.-.|.||.|-|- +|+-+|.-++ +|||=+.+..||..
T Consensus 110 pTSGNtGigLA~----~~a~~Gyk~i--~tmP~~ms~Ek~~~ 145 (362)
T KOG1252 110 PTSGNTGIGLAY----MAALRGYKCI--ITMPEKMSKEKRIL 145 (362)
T ss_pred CCCCCHHHHHHH----HHHHCCCEEE--EEECHHHHHHHHHH
T ss_conf 699853899999----9997396399--99042451789999
No 236
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=57.91 E-value=12 Score=16.70 Aligned_cols=90 Identities=16% Similarity=0.270 Sum_probs=47.8
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH-HHHHHCC--------CCEEEEECCCCCCCCCCCCCHH-----HH
Q ss_conf 17999966814799999998589984499982557-8855189--------9704851554255678888838-----99
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA-QALMMSK--------AKQIIQLGSGITEGLGAGSHPE-----VG 81 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~-~~l~~~~--------~~~~~~~g~~~~~g~g~g~~~~-----~g 81 (502)
||.|+|.|+-|+=.--+|.+.|.+ |.|++-+... +.+.... ......+-.. +.. +.+..+ +-
T Consensus 4 kI~IiGaGAiG~~~a~~L~~ag~d-V~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~-~~~--~~~~~D~vivavK 79 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLP-VRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAE-TAD--APEPIHRLLVACK 79 (305)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCC-CCC--CCCCCCEEEEEEC
T ss_conf 899988239999999999848997-399994789999999789989986895578740465-766--5788778999804
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEECCC
Q ss_conf 9999972999999726-998999980367
Q gi|254781176|r 82 RAAAEECIDEITEMLD-KTHMCFVTAGMG 109 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~-~~~~~~~~ag~g 109 (502)
.....+....|+..+. ++-+|++-=|+|
T Consensus 80 ~~~~~~a~~~l~~~l~~~t~Iv~lQNGlg 108 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 25689999998864499958999437764
No 237
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.79 E-value=13 Score=16.57 Aligned_cols=119 Identities=23% Similarity=0.293 Sum_probs=57.8
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC--CCEEEEECCCC-----------CCCCCCCCCHHHHH
Q ss_conf 179999668147999999985899844999825578855189--97048515542-----------55678888838999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSK--AKQIIQLGSGI-----------TEGLGAGSHPEVGR 82 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~--~~~~~~~g~~~-----------~~g~g~g~~~~~g~ 82 (502)
||.|+|.|..|-.+...+.+.| ++....+.+...+.... .-..+..+... +-|.- -.+|++-+
T Consensus 14 ~V~V~GlG~sG~a~a~~L~~~G---~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~-~~~p~l~~ 89 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFG---ARPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFP-PTAPVLAA 89 (487)
T ss_pred EEEEEEECHHHHHHHHHHHHCC---CEEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCC-CCCHHHHH
T ss_conf 8999915683899999999786---9799998982577999865994863762265646778899899579-98999999
Q ss_pred HHHH----HHHHHHHHHHCC------CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE--EEEECCCC
Q ss_conf 9999----729999997269------9899998036766674078999999986498499--99504300
Q gi|254781176|r 83 AAAE----ECIDEITEMLDK------THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV--GVVTKPFH 140 (502)
Q Consensus 83 ~~a~----~~~~~i~~~~~~------~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~--~~v~~pf~ 140 (502)
+.+. -+.-++--.+.. ..-++-++|--|.|-|- -.|+.+.+..|.-++ |=+-.|+.
T Consensus 90 a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTtt--sli~~iL~~~g~~~~~~GNiG~p~~ 157 (487)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTT--SMLHAMLRAAGRRSVLCGNIGSPVL 157 (487)
T ss_pred HHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH--HHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 9988990765999999987444336766559997988727899--9999999858998599813665766
No 238
>KOG1494 consensus
Probab=57.71 E-value=13 Score=16.56 Aligned_cols=229 Identities=19% Similarity=0.252 Sum_probs=109.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCE---EE-EECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 86179999668147999999985899844---99-982557885518997048515542556788888389999999729
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVN---FV-VANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~---~~-~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
..|+.|.|-+|.=+--+.-+++.+.. |. ++ ..||---+-+.|..+.+... + |=.+ .
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~-Vs~LaLYDi~~~~GVaaDlSHI~T~s~V-----~----g~~g----------~ 87 (345)
T KOG1494 28 GLKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIANTPGVAADLSHINTNSSV-----V----GFTG----------A 87 (345)
T ss_pred CCEEEEEECCCCCCCCHHHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCE-----E----CCCC----------H
T ss_conf 62499973487667568999742855-2301333203698620220016788713-----1----2678----------3
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC----------CHH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999972699899998036766674----------078-99999998649849999504300040678888999999999
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGT----------GAA-PIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQ 158 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgt----------g~~-p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~ 158 (502)
+++.++|+|+|+|.|-||+-..-|- |.. -+.+-+|+-+----+.|+|-|-+.--+ +|.+-|++-.
T Consensus 88 ~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVP----IaaevlKk~G 163 (345)
T KOG1494 88 DGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVP----IAAEVLKKAG 163 (345)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH----HHHHHHHHCC
T ss_conf 678987538978996389989999857776641447999999999865961216766076334205----8999999738
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHCCCCEEEEEEE-EC
Q ss_conf 863335450278887413665318999744679999998888876516655558987---87876415865899876-14
Q gi|254781176|r 159 ETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFA---DVRSVMRNMGRAMMGTG-EA 234 (502)
Q Consensus 159 ~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~---d~~~v~~~~g~a~~g~g-~~ 234 (502)
+....|||-+. ++ | +.++-.-++++. |+|-+ ||--|=.++|.+++-.= +.
T Consensus 164 -------~ydpkklfGVT----tL-------D--vVRA~tFv~~~~------~~~p~~~v~VPVIGGHaG~TIlPLlSQ~ 217 (345)
T KOG1494 164 -------VYDPKKLFGVT----TL-------D--VVRANTFVAEVL------NLDPAEDVDVPVIGGHAGITIIPLLSQC 217 (345)
T ss_pred -------CCCCCCEECEE----HH-------H--HHHHHHHHHHHH------CCCCHHCCCCCEECCCCCCEEEEECCCC
T ss_conf -------78865230300----21-------2--354888999871------7990013776434376785685400147
Q ss_pred ----CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHC---CCCCCEEEEEEE
Q ss_conf ----8620489999887527010002245553789996168-8889999999999999741---688639998531
Q gi|254781176|r 235 ----SGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGG-SDLTLFEVDEAATRIREEV---DSEANIILGATF 302 (502)
Q Consensus 235 ----~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~-~~~~l~e~~~~~~~i~~~~---~~~a~ii~G~~~ 302 (502)
.+++.-.++... .|+.+--=.++-..| -.-||+-....+.+..+.+ ..+.+++-.+.+
T Consensus 218 ~p~~~~~~~~~~~Lt~----------RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV 283 (345)
T KOG1494 218 KPPFRFTDDEIEALTH----------RIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFV 283 (345)
T ss_pred CCCCCCCHHHHHHHHH----------HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8765589999999999----------88717736777036878413567878899999999972799872787678
No 239
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.36 E-value=13 Score=16.52 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 386179999668147999999985899844999825578855
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALM 54 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~ 54 (502)
..++|.|+|+|.-|+.....+...|.. |..+-.+-+..++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~ 42 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLK 42 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHH
T ss_conf 864899987746779999999976984-79972477467787
No 240
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=57.20 E-value=10 Score=17.29 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=19.7
Q ss_pred HHHHHHHHHCCCCCCCCHHHH--HHHHCCCCEEEE---EEEECCCCCHHHHHHHH
Q ss_conf 888887651665555898787--876415865899---87614862048999988
Q gi|254781176|r 197 VSCITDLMIKEGLINLDFADV--RSVMRNMGRAMM---GTGEASGHGRGIQAAEA 246 (502)
Q Consensus 197 v~~i~~~i~~~g~in~df~d~--~~v~~~~g~a~~---g~g~~~g~~r~~~a~~~ 246 (502)
+.-++|-+.--|-+.+|+.+. --+...+.++++ |+|-.-...|+.+.++.
T Consensus 155 ~~~~vDavss~g~~~id~~~~giD~~~~ssqK~l~~ppGl~~~~vs~~a~~~~~~ 209 (356)
T cd06451 155 ALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKK 209 (356)
T ss_pred EEEEEECCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 2799725311055650256666059997688644589966899988999999860
No 241
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=56.97 E-value=13 Score=16.47 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=76.3
Q ss_pred EECCCHHHHHHHHHHCCCCCCEEEE-ECCCH------HHHHHCCCCEEE-EECCCCCCC----CC-------CCCCHHHH
Q ss_conf 9668147999999985899844999-82557------885518997048-515542556----78-------88883899
Q gi|254781176|r 21 GVGGGGGNAVNNMVSSGLQGVNFVV-ANTDA------QALMMSKAKQII-QLGSGITEG----LG-------AGSHPEVG 81 (502)
Q Consensus 21 g~gg~g~n~~~~~~~~~~~~~~~~~-~ntd~------~~l~~~~~~~~~-~~g~~~~~g----~g-------~g~~~~~g 81 (502)
-.||++.|+.-.+-+.|.+ +.|+. +-.|. +.|....++... ..-...|.- +. ..+++..-
T Consensus 33 ~~GG~~~Nva~~la~lG~~-~~~ig~vG~D~~G~~i~~~L~~~gV~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~ 111 (288)
T cd01941 33 SPGGVGRNIAENLARLGVS-VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIY 111 (288)
T ss_pred CCCCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 1797899999999986997-699997468569999999999849914579978999727999992899689984374400
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999729999997269989999803676667407899999998649849999504300040678888999999999863
Q gi|254781176|r 82 RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETV 161 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~ 161 (502)
...-.+..+...+.+..++++++..- ....+.-.+++.||+.|+.+.. -|+..+ +. .-+.++..++
T Consensus 112 ~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---d~~~~~---~~----~~~~~~~~~~ 177 (288)
T cd01941 112 ELLTPDFLRKIREALKEAKPIVVDAN----LPEEALEYLLALAAKHGVPVAF---EPTSAP---KL----KKLFYLLHAI 177 (288)
T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECC----CCHHHHHHHHHHHHHCCCEEEE---CCCHHH---HH----HHHHHHHCCC
T ss_conf 03698899999988854898999268----9989999999999875973996---451002---34----4379886069
Q ss_pred HHHHHHHHHH
Q ss_conf 3354502788
Q gi|254781176|r 162 DTLIVIPNQN 171 (502)
Q Consensus 162 d~~i~i~n~~ 171 (502)
| ++++|+.
T Consensus 178 d--~~~~n~~ 185 (288)
T cd01941 178 D--LLTPNRA 185 (288)
T ss_pred C--EEEECHH
T ss_conf 8--9986899
No 242
>PRK09117 consensus
Probab=56.90 E-value=4.5 Score=19.88 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=28.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 17999966814799999998589984499982557885518
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
||.|+|-|-.|+...-.+...|.+ .+..+.+.++|.+.
T Consensus 4 ~VaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~~~l~~~ 41 (282)
T PRK09117 4 TVGIIGAGTMGNGIAQACAVAGLD---VVMVDISDAAVQRG 41 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---EEEEECCHHHHHHH
T ss_conf 799989779999999999967996---89998988999999
No 243
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=56.61 E-value=5.2 Score=19.42 Aligned_cols=194 Identities=17% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCEEEEEEECCCHHH-----HHHHHHHCCCCCCEEEEECCCHHHHHHCCCC-----EEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 861799996681479-----9999998589984499982557885518997-----048515542556788888389999
Q gi|254781176|r 14 KPRITVFGVGGGGGN-----AVNNMVSSGLQGVNFVVANTDAQALMMSKAK-----QIIQLGSGITEGLGAGSHPEVGRA 83 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n-----~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~-----~~~~~g~~~~~g~g~g~~~~~g~~ 83 (502)
+++.-++=.||.|+= +...+.+.+.. |+++.+=| ..-+++.-++ ....|-..--+|.|-.-.-...--
T Consensus 4 ~~~~~~~~gGGTGG~fPAlA~a~~l~~~~~~-~~v~~lG~-~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~~~~~~~~~ 81 (368)
T TIGR01133 4 KMKKVALAGGGTGGIFPALAVAEELIKRGPE-VEVVWLGT-KRGLEERLVPSKEGIEFLTIPVGGLRRKGSKKLLKLPLL 81 (368)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEEECC-CCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8228999727830268999999999974893-69998506-775000034321574177774010036551014678899
Q ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCH-HHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99972999999726--9989999803676667407-899999998649-8499995043000406788889999999998
Q gi|254781176|r 84 AAEECIDEITEMLD--KTHMCFVTAGMGGGTGTGA-APIIAKIARNKG-VLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159 (502)
Q Consensus 84 ~a~~~~~~i~~~~~--~~~~~~~~ag~gggtgtg~-~p~ia~~a~~~~-~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~ 159 (502)
......-+.++.|+ ..|+|+ |||.=+ .|.+ =.|+.+| |-. -.|--.+--.+..=|. +
T Consensus 82 ~~~~~~~~a~~~l~~~~p~~v~-------G~GGY~s~P~~-~AA~l~g~iP~--------~~EQN~~pG~~Nk~ls---~ 142 (368)
T TIGR01133 82 KLLKAVLQARRILKKFKPDVVV-------GFGGYVSGPAG-LAAKLLGRIPL--------ILEQNAVPGLTNKLLS---R 142 (368)
T ss_pred HHHHHHHHHHHHHHHCCCCEEE-------ECCCHHHHHHH-HHHHHCCCCCE--------EEEECCHHHHHHHHHH---H
T ss_conf 9999999999998600874798-------74736789999-99876679948--------9861541257888878---8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCHHHHH--HHHCCCCEEEEEEEEC
Q ss_conf 63335450278887413665318999744---679999998888876516655558987878--7641586589987614
Q gi|254781176|r 160 TVDTLIVIPNQNLFRIANDKTTFADAFSM---ADQVLYSGVSCITDLMIKEGLINLDFADVR--SVMRNMGRAMMGTGEA 234 (502)
Q Consensus 160 ~~d~~i~i~n~~l~~~~~~~~~~~~af~~---~d~~l~~~v~~i~~~i~~~g~in~df~d~~--~v~~~~g~a~~g~g~~ 234 (502)
+++.+. .+|.++|.. +..+...+- ..+.-+.++|-.+.+ ......-..++=.|=+
T Consensus 143 ~A~~V~--------------~~f~~~~~~~~~~~~~~~~g~------pvr~~~~~~~~~~~~~~~~~~~~~~~ilv~GGS 202 (368)
T TIGR01133 143 FAKRVL--------------VSFPGAKKFFPAAEKVVVVGN------PVREEIRSLPAARARKRFKLRPGKLRILVLGGS 202 (368)
T ss_pred HHCEEE--------------EECHHHHCCCCCCCCEEEECC------HHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCC
T ss_conf 744311--------------105133226766675687014------134543037825688862168998279996273
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 86204899998875
Q gi|254781176|r 235 SGHGRGIQAAEAAV 248 (502)
Q Consensus 235 ~g~~r~~~a~~~a~ 248 (502)
.|=.-.-+.|-.++
T Consensus 203 QGA~~lN~~vp~~~ 216 (368)
T TIGR01133 203 QGAKILNELVPKAL 216 (368)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 76899999999999
No 244
>PRK06186 hypothetical protein; Validated
Probab=55.71 E-value=14 Score=16.33 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 72699899998036766674078999999986498499995
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
.|++.|=++|.-|. |..|.-..-..++.||+-++-.+|++
T Consensus 50 ~L~~~dgilv~pGf-G~RG~eGki~Ai~yARen~iP~LGIC 89 (229)
T PRK06186 50 DLAGFDGIWCVPGS-PYRNEDGALTAIRFARENGIPFLGTC 89 (229)
T ss_pred HHCCCCEEEECCCC-CCCCHHHHHHHHHHHHHCCCCEEEEH
T ss_conf 22259989989987-77656389999999987699878642
No 245
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.66 E-value=14 Score=16.32 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=71.7
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 85155425567888883899999997299999972699899998036766674078999999986498499995043000
Q gi|254781176|r 62 IQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHF 141 (502)
Q Consensus 62 ~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~ 141 (502)
+..|.++|.|.||. +|....-+- +.+.| | .=+|-.|++|. | -.-|.+|++.++..+-.+.+--.|=.+
T Consensus 3 v~yG~SITqG~~As-rP~~a~~~~------l~r~l-g--~~viNlG~sG~-g-~le~~~a~~i~~~~a~~~vi~~g~N~~ 70 (177)
T cd01844 3 VFYGTSISQGACAS-RPGMAWTAI------LARRL-G--LEVINLGFSGN-A-RLEPEVAELLRDVPADLYIIDCGPNIV 70 (177)
T ss_pred EEEECHHHCCCCCC-CCCCCHHHH------HHHHC-C--CCEEECCCCCC-C-CCCHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99828376488889-864416999------99854-9--97771466754-3-102889999861899889996346788
Q ss_pred CCH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 406-788889999999998-633354502788874136653189997446799999988888765166555589878787
Q gi|254781176|r 142 EGS-RRMRVAESGIEALQE-TVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRS 219 (502)
Q Consensus 142 eg~-~r~~~a~~~~~~l~~-~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~ 219 (502)
-.. ...+.....+..+++ +-++-|++--.-...-............ -..+.++.+.+.+...|.-||.|-|-..
T Consensus 71 ~~~~~~~~~~~~~V~~ir~~~p~tPIvlv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~l~~ldg~~ 146 (177)
T cd01844 71 GAEAMVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTPGRGKLTL----AVRRALREAFEKLRADGVPNLYYLDGEE 146 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 747899999999999999878899789983367764446875278899----9999999999999976999879946512
Q ss_pred HHCCC
Q ss_conf 64158
Q gi|254781176|r 220 VMRNM 224 (502)
Q Consensus 220 v~~~~ 224 (502)
++...
T Consensus 147 l~g~~ 151 (177)
T cd01844 147 LLGPD 151 (177)
T ss_pred CCCCC
T ss_conf 06887
No 246
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=55.65 E-value=14 Score=16.32 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=93.5
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCH-----------------H
Q ss_conf 79999668147999999985899844999825578855189970485155425567888883-----------------8
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHP-----------------E 79 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~-----------------~ 79 (502)
.-|||=|=||.-+--++-+.|.+ |-.|+. -.-+|.-|.-..-+ ||. +..|- .=.+| .
T Consensus 3 viVIGgGLAGl~aai~~a~~G~~-~~lvs~--GqsaL~fsSGsiDl-Lg~-~P~g~-~v~~P~~ai~~L~~~~p~HPY~~ 76 (419)
T TIGR03378 3 VIIIGGGLAGLSCALRLAEAGKK-CAIIAA--GQSALHFSSGSLDL-LSR-LPDGQ-AVEQPMDALEALAQQAPEHPYSK 76 (419)
T ss_pred EEEECCCHHHHHHHHHHHHCCCE-EEEEEC--CCCCCCCCCCCHHH-HCC-CCCCC-CCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 89999619999999999977995-899937--83302123535765-035-99989-77798999999885376989003
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---------EEEEEECCCCCCCCCHHHH--HHHHHH----HCCCEEEEEEECCCCCCCH
Q ss_conf 999999972999999726998---------9999803676667407899--999998----6498499995043000406
Q gi|254781176|r 80 VGRAAAEECIDEITEMLDKTH---------MCFVTAGMGGGTGTGAAPI--IAKIAR----NKGVLTVGVVTKPFHFEGS 144 (502)
Q Consensus 80 ~g~~~a~~~~~~i~~~~~~~~---------~~~~~ag~gggtgtg~~p~--ia~~a~----~~~~~~~~~v~~pf~~eg~ 144 (502)
+|...-.+..+..+.+++... =.++..-||.=--|--+|- ...-.. ...+++|+| ||-
T Consensus 77 iG~~~V~~~~~~~~~ll~~~gl~l~g~~~~Nh~~~TplGtlkpTwLsp~~~~~~~~~~~~~~k~i~vvgi-------eG~ 149 (419)
T TIGR03378 77 LGKTKVLALLQWFERLLKAQGLPLVGQSELNHWRLTPLGTLRATWLSPPFVPTVPLNDAFPHDRILLVGI-------EGF 149 (419)
T ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEC-------CCC
T ss_conf 1789999999999999997498644787785364457767653204886440345666666673699965-------645
Q ss_pred H--HHHHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 7--888899999999986333-----545027-88874136653189997446799999988888765166555589878
Q gi|254781176|r 145 R--RMRVAESGIEALQETVDT-----LIVIPN-QNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFAD 216 (502)
Q Consensus 145 ~--r~~~a~~~~~~l~~~~d~-----~i~i~n-~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d 216 (502)
+ --+.+...|++.....+. .|.+|- +.|.+-..+-.++.=|-.+-+.- ....+++-
T Consensus 150 ~DF~p~l~A~~L~~~~~~~~~~~~~~~~~lP~l~~lr~n~~e~r~~~iAr~Ld~~~---~~~~La~~------------- 213 (419)
T TIGR03378 150 RDFQPQLAADNLKQHPQFAHCEITTAELELPQLDELRRNPCEFRSVDIARLLDKEE---NRNALADE------------- 213 (419)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHCCCCCCCCHHHHHHHHCCHH---HHHHHHHH-------------
T ss_conf 78898999999985656468605899985685254313952021888999867806---79999999-------------
Q ss_pred HHHHHCCCCE----EEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 7876415865----8998761486204899998875270100
Q gi|254781176|r 217 VRSVMRNMGR----AMMGTGEASGHGRGIQAAEAAVANPLLD 254 (502)
Q Consensus 217 ~~~v~~~~g~----a~~g~g~~~g~~r~~~a~~~a~~~pll~ 254 (502)
++....+... |++|.+.. .+..+..++++..|+.+
T Consensus 214 l~~~~~~~d~V~lPAvlGl~~~---~~~~~~L~~~lg~~v~E 252 (419)
T TIGR03378 214 LSRLANGADLVVLPACFGLGDG---LELLRELEQATGLTLCE 252 (419)
T ss_pred HHHHCCCCCEEEECCEECCCCH---HHHHHHHHHHHCCCEEE
T ss_conf 9975689889998964178973---89999999988988898
No 247
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.61 E-value=14 Score=16.32 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=58.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC--CH---HHHHHCCCCEEEEECCCCCC----------CCCC-CCCHH
Q ss_conf 179999668147999999985899844999825--57---88551899704851554255----------6788-88838
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT--DA---QALMMSKAKQIIQLGSGITE----------GLGA-GSHPE 79 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt--d~---~~l~~~~~~~~~~~g~~~~~----------g~g~-g~~~~ 79 (502)
+..|+|+|+.|-.+...+.+.|. ...+.+. .. ..|..-....++.+|..-.. --|- -.+|.
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~---~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~SPgI~~~~p~ 85 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGY---QFAVTDTRENPPELATLRRDYPQVEVRCGELDAEFLCQAEEIIVSPGLALATPA 85 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCCCCCHH
T ss_conf 58999989999999999997889---599991899916799999747997799788897780789999989972999999
Q ss_pred HHHHHHH----HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE--EEEEEECCCC
Q ss_conf 9999999----72999999726998999980367666740789999999864984--9999504300
Q gi|254781176|r 80 VGRAAAE----ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL--TVGVVTKPFH 140 (502)
Q Consensus 80 ~g~~~a~----~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~--~~~~v~~pf~ 140 (502)
+-+.... -+.-++-..+....+ +-++|--|.|-| +-.++.+.+..|.- +.|-+-.|+.
T Consensus 86 ~~~a~~~~i~i~~e~el~~~~~~~~~-IaVTGTnGKTTT--tsli~~iL~~~g~~~~~gGNiG~p~~ 149 (448)
T PRK03803 86 LQAAAAAGIKISGDIELFARAAKAPI-VAITGSNAKSTV--TTLVGEMAKAAGKRVAVGGNLGTPAL 149 (448)
T ss_pred HHHHHHCCCCEECHHHHHHHHCCCCE-EEECCCCCHHHH--HHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 99999859968319999862178988-998589983889--99999999865983799403276136
No 248
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=55.54 E-value=8.6 Score=17.77 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.6
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 9989999803676667407899999998
Q gi|254781176|r 98 KTHMCFVTAGMGGGTGTGAAPIIAKIAR 125 (502)
Q Consensus 98 ~~~~~~~~ag~gggtgtg~~p~ia~~a~ 125 (502)
.+.|++| |||||.||..+=+-+
T Consensus 135 ~~piIMI------g~GTGIAPfRsfl~~ 156 (286)
T cd06208 135 NATLIMI------ATGTGIAPFRSFLRR 156 (286)
T ss_pred CCCEEEE------ECCCCCHHHHHHHHH
T ss_conf 9987999------478684658999999
No 249
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=55.54 E-value=14 Score=16.31 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=57.4
Q ss_pred EEECCCHHHHHHHHHHCCCCCCEEE-EECCCH------HHHHHCCCCEEEEEC-CCCCC----CC---------CCCCCH
Q ss_conf 9966814799999998589984499-982557------885518997048515-54255----67---------888883
Q gi|254781176|r 20 FGVGGGGGNAVNNMVSSGLQGVNFV-VANTDA------QALMMSKAKQIIQLG-SGITE----GL---------GAGSHP 78 (502)
Q Consensus 20 ~g~gg~g~n~~~~~~~~~~~~~~~~-~~ntd~------~~l~~~~~~~~~~~g-~~~~~----g~---------g~g~~~ 78 (502)
...||+ +|+-..+.+.|.. +.|+ .+-+|. +.|....++.....- ...|- -. -....+
T Consensus 37 ~~~GGa-~NvA~~la~LG~~-~~~i~~vG~D~~G~~i~~~L~~~gV~~~~v~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 114 (304)
T cd01172 37 IRLGGA-ANVANNLASLGAK-VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVDREDDS 114 (304)
T ss_pred EECCHH-HHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 728779-9999999986996-79998506986899999999970997543111799855899996487168999626566
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHCCCEEE
Q ss_conf 8999999972999999726998999980367666-74078999999986498499
Q gi|254781176|r 79 EVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGT-GTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 79 ~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggt-gtg~~p~ia~~a~~~~~~~~ 132 (502)
.+....-....+.+...+...+++++.- .+-|. -.-....+.+.||+.++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~vi~sd-~~~g~~~~~~~~~l~~~ak~~~~~v~ 168 (304)
T cd01172 115 PLSAEEEQRLIERIAERLPEADVVILSD-YGKGVLTPRVIEALIAAARELGIPVL 168 (304)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 4322356777776775455589999914-44553356778899999997598589
No 250
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.50 E-value=14 Score=16.30 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 567888883899999997299999972-699899998036766674078999999986498499
Q gi|254781176|r 70 EGLGAGSHPEVGRAAAEECIDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 70 ~g~g~g~~~~~g~~~a~~~~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
+|||--.|-|+||.--.+-.+--++.+ .++|-+||. .|.--.+++|.++-++.|.-+|
T Consensus 150 ~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CTnlRt~eii~~lE~~~G~PVv 208 (238)
T COG3473 150 KGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CTNLRTFEIIEKLERDTGVPVV 208 (238)
T ss_pred ECCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCEEEEE-----EECCCCHHHHHHHHHHHCCCEE
T ss_conf 4157766500114683899999998567777769997-----0045317889999997499636
No 251
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=55.46 E-value=14 Score=16.30 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=27.4
Q ss_pred EEEEEEECCCHHHHHHHHHHCCC--CCCEEEEECCCHH
Q ss_conf 17999966814799999998589--9844999825578
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGL--QGVNFVVANTDAQ 51 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~--~~~~~~~~ntd~~ 51 (502)
||.|.|=||.|-.++.-++-..+ ++-..+++++|..
T Consensus 1 kia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~ 38 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD 38 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 97898899774999999999999978996999989897
No 252
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=55.29 E-value=14 Score=16.28 Aligned_cols=204 Identities=13% Similarity=0.100 Sum_probs=120.6
Q ss_pred EEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH-CCCCEEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9996681479999999858998449998255788551-899704851---554255678888838999999972999999
Q gi|254781176|r 19 VFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM-SKAKQIIQL---GSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 19 v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~-~~~~~~~~~---g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
..-+=|||...+-+++..-+....-++..|+--.+-. +-+..++.. -..+.--+|-.+-.-.|-+.|....
T Consensus 15 ~~~CpGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgi~~s~~~~~y~~~~~~hs~~gra~a~atGik~A~~~l----- 89 (294)
T COG1013 15 TRWCPGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPVYVNPPWVHSLHGRAAAVATGIKLANPAL----- 89 (294)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCC-----
T ss_conf 763889983499999998504003333688985898377777643423558723200256234577799751077-----
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788874
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFR 174 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~ 174 (502)
.|++.+|=|++-+=|....+.-+.|..++.++.+=+..+.--|-.|..---.
T Consensus 90 ------~Viv~gGDG~~~dIG~~~l~ha~~Rn~dit~iv~DNevYgnTggQ~S~tTp~---------------------- 141 (294)
T COG1013 90 ------SVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK---------------------- 141 (294)
T ss_pred ------EEEEEECCCHHHHCCHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCCC----------------------
T ss_conf ------4999905607754101677899970798599997770045678735889868----------------------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 13665318999744679999998888876516655558-98787876415865899876148620489999887527010
Q gi|254781176|r 175 IANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINL-DFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLL 253 (502)
Q Consensus 175 ~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~-df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll 253 (502)
+..+ ..+-.|- -. +--|+-.++-..|.+-+..+...-..+..+++++|+...
T Consensus 142 --G~~t----------------------~t~p~Gk-~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~~A~~~~-- 194 (294)
T COG1013 142 --GAKT----------------------KTTPYGK-RSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHK-- 194 (294)
T ss_pred --CCEE----------------------EECCCCC-CCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC--
T ss_conf --8760----------------------3368987-767877999999876997699970359899999999998567--
Q ss_pred CCCCCCCCCEEEEEEEC---CCCCCHHHHHHHHHHHHH
Q ss_conf 00224555378999616---888899999999999997
Q gi|254781176|r 254 DEASMKGSQGLLISITG---GSDLTLFEVDEAATRIRE 288 (502)
Q Consensus 254 ~~~~~~~a~~~l~~i~~---~~~~~l~e~~~~~~~i~~ 288 (502)
|..=|.+.--| +..-+...+.+...++..
T Consensus 195 ------Gps~I~v~sPC~t~~~~~~~~~~~~~~~ave~ 226 (294)
T COG1013 195 ------GPSFIDVLSPCPTGNGRNTMKTIEEAKLAVET 226 (294)
T ss_pred ------CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf ------97699996688677875501799999999863
No 253
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=55.25 E-value=14 Score=16.28 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=16.6
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 764158658998761486204899998
Q gi|254781176|r 219 SVMRNMGRAMMGTGEASGHGRGIQAAE 245 (502)
Q Consensus 219 ~v~~~~g~a~~g~g~~~g~~r~~~a~~ 245 (502)
.-|+.+|.+++|+-... ..|.+|++
T Consensus 229 ~~MSGSGSt~Fglf~~~--~~A~~a~~ 253 (279)
T PRK00343 229 ARMTGTGACVFAEFDTE--AEAEAVLA 253 (279)
T ss_pred CEEECCCCEEEEEECCH--HHHHHHHH
T ss_conf 74654222588997999--99999998
No 254
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=55.06 E-value=11 Score=16.94 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 8617999966814799999998589984499
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFV 44 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~ 44 (502)
+-|+.|+|.||.|.=+.-+++..|+..+.++
T Consensus 20 ~s~VLiiG~~glG~EiaKNLvLaGV~svti~ 50 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGIGSFTIV 50 (425)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6939999997119999987213289769999
No 255
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=55.02 E-value=14 Score=16.25 Aligned_cols=99 Identities=20% Similarity=0.363 Sum_probs=67.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC-CC--HHHHH-HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8617999966814799999998589984499982-55--78855-18997048515542556788888389999999729
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVAN-TD--AQALM-MSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n-td--~~~l~-~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
-.|+.|||-|-.|+=++++|...|+. ..+.+| |- +|.|. +...|.++.+- --..
T Consensus 185 ~~~~LliGAGeMg~Lva~~L~~~~v~--~~~i~NRt~~rA~~LA~e~~~P~~~~f~--------------------~La~ 242 (436)
T TIGR01035 185 GKKVLLIGAGEMGELVAKHLREKGVG--KVLIANRTYERAEKLAKELGGPEAVKFE--------------------ALAL 242 (436)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCC--EEEEECCCHHHHHHHHHHCCCCCCCCCC--------------------HHHH
T ss_conf 64189982745799999999648952--8988556778999999870786645444--------------------5548
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCH-HHHHHHH-------HHH----CCCEEEEEEECCCCCC
Q ss_conf 999997269989999803676667407-8999999-------986----4984999950430004
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGA-APIIAKI-------ARN----KGVLTVGVVTKPFHFE 142 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~-~p~ia~~-------a~~----~~~~~~~~v~~pf~~e 142 (502)
+++.++|..+|+|| +-||| -|||.+- .|. .+-|-+.=..+|=+.+
T Consensus 243 ~~L~~~L~~~Divi--------ssTgA~~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvPRdvd 299 (436)
T TIGR01035 243 EKLEEALAEADIVI--------SSTGAPEPIVSKEDVERALKERRRDEAARPLFIVDIAVPRDVD 299 (436)
T ss_pred HHHHHHHHHCCEEE--------EECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 99999974288999--------8557653100203489999972220015886999758899863
No 256
>pfam07082 DUF1350 Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=54.98 E-value=13 Score=16.38 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHHHH------HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67666740789999------9998649849999504300040678888999999999863335
Q gi|254781176|r 108 MGGGTGTGAAPIIA------KIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 108 ~gggtgtg~~p~ia------~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
+=||.--|++|-|+ .+| +.| ++||.+||.+ |-.-..+|.+...+++.+.+.+
T Consensus 22 FiGGaf~ga~P~vtYr~lLe~L~-~~g---~~ViAtpy~~-~fDH~~iA~~v~~~F~~~~~~L 79 (250)
T pfam07082 22 FLGGAFVATAPQLTYRWLLEHLG-EAG---YVVIATPFVN-TFDHGAIALSVLNKFEYALERL 79 (250)
T ss_pred EECCHHHCCCCHHHHHHHHHHHH-HCC---CEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 70766542682889999999998-789---6899923678-9877999999999999999999
No 257
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.96 E-value=13 Score=16.37 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=26.6
Q ss_pred CHHHCC-CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 845438-61799996681479999999858998449998255
Q gi|254781176|r 9 DITELK-PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD 49 (502)
Q Consensus 9 ~~~~~~-~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd 49 (502)
.+..|+ -||.|+|+|+.|-.+...+...|. +.++.+..
T Consensus 3 ~~~~~~gk~v~v~GlG~sG~s~a~~L~~~G~---~V~~~D~~ 41 (457)
T PRK01390 3 PVTSFKGKTVALFGLGGSGLATARALKAGGA---EVIAWDDN 41 (457)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 7320289989999436999999999997899---79999399
No 258
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=54.67 E-value=12 Score=16.83 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=19.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 6766674078999999986498499
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
+||-+|+|-+-+-+.+|+.+|+-+|
T Consensus 8 igG~sGvGKStla~~lA~rlgi~~v 32 (197)
T PRK12339 8 IGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 8579988789999999997499755
No 259
>PRK01184 hypothetical protein; Provisional
Probab=54.57 E-value=13 Score=16.42 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=8.6
Q ss_pred EEEEEECCCHHHHHHHHHH
Q ss_conf 7999966814799999998
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVS 35 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~ 35 (502)
|-+.|--|+|=.+|..+++
T Consensus 4 IGlTG~iGSGKstva~i~~ 22 (183)
T PRK01184 4 IIVTGMPGSGKGEFSKIAR 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9996899887899999999
No 260
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=54.49 E-value=9.3 Score=17.54 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=14.2
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 998999980367666740789999999864984999
Q gi|254781176|r 98 KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 98 ~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
..|.||.+.- ..---.++++.|+.||-|++
T Consensus 180 k~D~V~aIGP------~~MMK~vs~~Tk~ygIpT~V 209 (993)
T PRK12775 180 KPDKVVAIGP------MPMMHACVETTRPFGVKTMV 209 (993)
T ss_pred CCCEEEEECC------HHHHHHHHHHHCCCCCCEEE
T ss_conf 9888999898------89999999872525997589
No 261
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=54.45 E-value=11 Score=17.08 Aligned_cols=216 Identities=20% Similarity=0.309 Sum_probs=124.6
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE--EECCCCCCCHHHHHHHHHHH-----HHHHH
Q ss_conf 729999997269989999803676667407899999998649849999--50430004067888899999-----99998
Q gi|254781176|r 87 ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV--VTKPFHFEGSRRMRVAESGI-----EALQE 159 (502)
Q Consensus 87 ~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~--v~~pf~~eg~~r~~~a~~~~-----~~l~~ 159 (502)
.-+++|.+++....+|+| -|-||||=+-=+=|||=|+|-=.=|+ +|-| || .|-.++ ++|+.
T Consensus 72 ~kRedI~~AI~~nQVvii----AGETGSGKTTQLPKICLELGrG~~GlIGHTQP------RR--lAAR~VA~R~AeELgt 139 (1320)
T TIGR01967 72 AKREDIAKAIAENQVVII----AGETGSGKTTQLPKICLELGRGSRGLIGHTQP------RR--LAARSVAERVAEELGT 139 (1320)
T ss_pred HHHHHHHHHHHHCCEEEE----ECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCH------HH--HHHHHHHHHHHHHHCC
T ss_conf 118999999984898999----72448762023216777542787654124714------68--8999999999998388
Q ss_pred ------------------------HHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHH--HHHHHHHHHHHH------HHH
Q ss_conf ------------------------6333545--027888741366531899974467--999999888887------651
Q gi|254781176|r 160 ------------------------TVDTLIV--IPNQNLFRIANDKTTFADAFSMAD--QVLYSGVSCITD------LMI 205 (502)
Q Consensus 160 ------------------------~~d~~i~--i~n~~l~~~~~~~~~~~~af~~~d--~~l~~~v~~i~~------~i~ 205 (502)
..|.++. +--||+|+-|+- .=+.||-.-+= +.|---.|.|.- ||-
T Consensus 140 plGe~VGYkVRF~D~v~~~t~VKLmTDGiLLAE~Q~DRfL~~YDT-IIIDEAHERSLNIDFLLGYLK~lL~rRPDLKiII 218 (1320)
T TIGR01967 140 PLGELVGYKVRFEDQVSSNTLVKLMTDGILLAETQQDRFLERYDT-IIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIII 218 (1320)
T ss_pred CCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 988613203663142688543630322358998520022210673-3651123112338899988876326688652574
Q ss_pred CCCCCCCC-----HHHH----HHHHCCCCEE---------EEEEEECC-----CCCHHHHHHHHHHHCCCCCCC-CCCCC
Q ss_conf 66555589-----8787----8764158658---------99876148-----620489999887527010002-24555
Q gi|254781176|r 206 KEGLINLD-----FADV----RSVMRNMGRA---------MMGTGEAS-----GHGRGIQAAEAAVANPLLDEA-SMKGS 261 (502)
Q Consensus 206 ~~g~in~d-----f~d~----~~v~~~~g~a---------~~g~g~~~-----g~~r~~~a~~~a~~~pll~~~-~~~~a 261 (502)
.--+|-+| |++. -=|++=||.+ +----+.+ -+.--.+|+=.|++-=.=+.- .-+|-
T Consensus 219 TSATID~ERFs~HFn~AeGkPaPIIEVSGRTyPVe~RYRPL~~~~~~~Gnqi~~d~d~~~ai~~AvdEL~~e~~~eGkGP 298 (1320)
T TIGR01967 219 TSATIDPERFSRHFNNAEGKPAPIIEVSGRTYPVEVRYRPLVEEQEDDGNQIVIDLDQLEAILAAVDELVAEGPDEGKGP 298 (1320)
T ss_pred ECCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 00235744687862278889887555278546651111687644488777041011278899999999974275557899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-EEECCCCC------CEEEEEEEEECCC
Q ss_conf 37899961688889999999999999741688639998-53134657------5479999851355
Q gi|254781176|r 262 QGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILG-ATFDEALE------GVIRVSVVATGIE 320 (502)
Q Consensus 262 ~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G-~~~d~~~~------~~~~v~~iatg~d 320 (502)
-.|||.+-|-.+ |-++++.++..-=-+++|.-= ++....-. +.-|=.|.||-+=
T Consensus 299 GDiLIFlpGERE-----IRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~RvF~pHsGRRIVLaTNVA 359 (1320)
T TIGR01967 299 GDILIFLPGERE-----IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVA 359 (1320)
T ss_pred CCEEEECCCCCC-----HHHHHHHHHCCCCCCEEEECCHHHCCHHHCCCCCCCCCCCEEEEECCHH
T ss_conf 726763788863-----6899999844687870440552215864474400685962345330101
No 262
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=54.30 E-value=14 Score=16.17 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=24.0
Q ss_pred HHCCCE-EEEEEECCCHH-----HHHHHHHHCCCCCCEEEEECCCH
Q ss_conf 543861-79999668147-----99999998589984499982557
Q gi|254781176|r 11 TELKPR-ITVFGVGGGGG-----NAVNNMVSSGLQGVNFVVANTDA 50 (502)
Q Consensus 11 ~~~~~~-i~v~g~gg~g~-----n~~~~~~~~~~~~~~~~~~ntd~ 50 (502)
++-+|. |.+|||=|+|= -.-+.+..+|.. |=+-|.+|=+
T Consensus 78 ~~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~-V~laAgDTFR 122 (284)
T TIGR00064 78 EEKKPNVILFVGVNGVGKTTTIAKLANKLKKQGKS-VLLAAGDTFR 122 (284)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCE-EEEECCCHHH
T ss_conf 47897799998440886010288999999874990-8998275247
No 263
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=54.28 E-value=7.6 Score=18.17 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCCCCH---HHHHHHHHHHCCCEEEEE
Q ss_conf 989999803676667407---899999998649849999
Q gi|254781176|r 99 THMCFVTAGMGGGTGTGA---APIIAKIARNKGVLTVGV 134 (502)
Q Consensus 99 ~~~~~~~ag~gggtgtg~---~p~ia~~a~~~~~~~~~~ 134 (502)
-||+| =|--|||= |-+|||+-+|||+|+=|-
T Consensus 43 LHMiF-----KGNPGTGKTTVAR~~gklf~emnvL~KGH 76 (261)
T TIGR02881 43 LHMIF-----KGNPGTGKTTVARLLGKLFKEMNVLSKGH 76 (261)
T ss_pred EEEEE-----ECCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 78774-----27866843899999999985337567886
No 264
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.18 E-value=14 Score=16.16 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCC--------CCCCCCCHHHHHHHH
Q ss_conf 861799996681479999999858998449998255788551899704851554255--------678888838999999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITE--------GLGAGSHPEVGRAAA 85 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~--------g~g~g~~~~~g~~~a 85 (502)
.-++.|||=|..+.-=+..+.+.|-. |..|+-.-+..-........-..+-+..+. =..|-.|+++-++.+
T Consensus 10 gk~vLVVGGG~vA~rK~~~Ll~~gA~-VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT~d~~~N~~i~ 88 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAH-ITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAATNDPRVNEAVA 88 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 98699988989999999999868996-99986999989999997699447616788667516704455279899999999
Q ss_pred HHHHHHHHHHHCCCC---EE-EEEE------CCCCCCCC-CHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 972999999726998---99-9980------36766674-0789999999864984999950430004067888899999
Q gi|254781176|r 86 EECIDEITEMLDKTH---MC-FVTA------GMGGGTGT-GAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGI 154 (502)
Q Consensus 86 ~~~~~~i~~~~~~~~---~~-~~~a------g~gggtgt-g~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~ 154 (502)
..... ..++..+| .+ |++- +|-=+-.| |++|++|+..|+.= -. .+|-.|+ .-.+-+
T Consensus 89 ~~~~~--~~lvNvvD~p~~~dFi~Paiv~rg~l~IaIST~G~SP~lAr~iR~~l-E~----~lp~~~~------~~~~~~ 155 (202)
T PRK06718 89 EALPE--NALFNVIGDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDEL-EA----LYDESYE------SYIDFL 155 (202)
T ss_pred HHHHH--CCCEEECCCCCCCEEEEEEEEEECCEEEEEECCCCCHHHHHHHHHHH-HH----HCCHHHH------HHHHHH
T ss_conf 98654--48757557865482787427852998999988997839999999999-98----7368799------999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999986333545
Q gi|254781176|r 155 EALQETVDTLIV 166 (502)
Q Consensus 155 ~~l~~~~d~~i~ 166 (502)
.++|+.+-..+.
T Consensus 156 ~~~R~~vk~~~~ 167 (202)
T PRK06718 156 YECRQKIKELQI 167 (202)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998679
No 265
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=53.93 E-value=10 Score=17.30 Aligned_cols=61 Identities=26% Similarity=0.187 Sum_probs=25.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEEEEEEEC-CCCC-CEEEEEEEEECCC
Q ss_conf 553789996168888999999999999974-16886399985313-4657-5479999851355
Q gi|254781176|r 260 GSQGLLISITGGSDLTLFEVDEAATRIREE-VDSEANIILGATFD-EALE-GVIRVSVVATGIE 320 (502)
Q Consensus 260 ~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~-~~~~a~ii~G~~~d-~~~~-~~~~v~~iatg~d 320 (502)
-+-|+|..-.-...+.-.-++.=.+.|++. +.=..|..+|-.+. ++|. ...--.+||||..
T Consensus 473 ~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkdit~~eL~~egyDAVfla~Ga~ 536 (760)
T PRK12778 473 EIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKTISVEELEEEGFKGIFVASGAG 536 (760)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCCHHHHHHCCCCEEEEECCCC
T ss_conf 8897576548611087899999999998649799899577886899999758899999940678
No 266
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=53.80 E-value=14 Score=16.11 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 81479999999858998449998255788551899704851554255678888838999999972999999726998999
Q gi|254781176|r 24 GGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCF 103 (502)
Q Consensus 24 g~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~ 103 (502)
|=--.+.-+|.+.+ +++|+..+.=+..--...+..|. ++-..|-.|..= +..+.....+.. .=+=
T Consensus 9 GDr~~a~~~l~~~g--~~Dylv~D~LAE~Tmai~~~~k~-------~~p~~GY~~~f~-----~~l~~~L~~~~~-kgik 73 (362)
T pfam07287 9 GDRIEAALELAEGG--GLDYLVFDYLAERTMAILQRARL-------KDPELGYAPTFL-----ERLEPVLPLCAE-KGIR 73 (362)
T ss_pred CCCHHHHHHHHHCC--CCCEEEEEHHHHHHHHHHHHHHH-------HCCCCCCHHHHH-----HHHHHHHHHHHH-CCCE
T ss_conf 78668999998569--99889874078999999999972-------398768506799-----999999999997-2938
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf 98036766674078999999986498-4999950
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGV-LTVGVVT 136 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~-~~~~~v~ 136 (502)
|+..+||-.-.|++-.|.++|+++|. |.||+|+
T Consensus 74 ii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~ 107 (362)
T pfam07287 74 IVTNAGALNPRGAAEAVRELARELGLDLKVAVVE 107 (362)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9952887897999999999999779995399997
No 267
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=53.52 E-value=15 Score=16.08 Aligned_cols=79 Identities=23% Similarity=0.401 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 8997048515542556788888389999999729999997-26-998999980367666740789999999864984999
Q gi|254781176|r 56 SKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM-LD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 56 ~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~-~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
--+++||-||++ ++|.++++|-...+++.+- +. +.++ ||+.- .+.||+-. |.
T Consensus 28 eG~~~~iIIGSR---------~~EkA~EaA~ka~e~l~~~G~d~~i~~------------~G~~N--~~AA~~aD---VV 81 (233)
T TIGR01915 28 EGVDNEIIIGSR---------DKEKAEEAAAKALEELGDQGVDRDIKV------------EGAEN--EEAAKRAD---VV 81 (233)
T ss_pred CCCCCCEEEECC---------CHHHHHHHHHHHHHHHHCCCCCCCCEE------------ECCCC--HHHHHHCC---EE
T ss_conf 877755577048---------845699999999999970895136257------------54887--78872389---78
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 950430004067888899999999986333-54502
Q gi|254781176|r 134 VVTKPFHFEGSRRMRVAESGIEALQETVDT-LIVIP 168 (502)
Q Consensus 134 ~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~-~i~i~ 168 (502)
|||.||.+-. .-|+.|+..++. -|||+
T Consensus 82 il~vP~~~~~--------~~l~~~~~~L~~dK~Vis 109 (233)
T TIGR01915 82 ILAVPFDHVL--------KTLESIKDELEADKIVIS 109 (233)
T ss_pred EEEECCHHHH--------HHHHHHHHHHCCCCEEEE
T ss_conf 9984222247--------899999998518928996
No 268
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=52.98 E-value=15 Score=16.02 Aligned_cols=176 Identities=20% Similarity=0.345 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 99999726998999980367666740789999999864--98499995043000406788889999-----999998633
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSRRMRVAESG-----IEALQETVD 162 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~r~~~a~~~-----~~~l~~~~d 162 (502)
+-+++.=++-|-||+--| |||==-|. |-+-|.+ .|=+||| =| +-.--|++|.+. |...-=++|
T Consensus 160 Eil~Q~~~~~davFVpvG-GGGLiAGV----A~~~K~l~P~IkvIGV--Ep---~DS~am~~sL~AG~~V~L~~VGlFaD 229 (508)
T TIGR01124 160 EILRQVAEDLDAVFVPVG-GGGLIAGV----AALVKQLMPEIKVIGV--EP---TDSDAMKQSLEAGERVDLDQVGLFAD 229 (508)
T ss_pred HHHHCCCCCCCEEEEECC-CCHHHHHH----HHHHHHCCCCEEEEEE--CC---CHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 765057684768887117-73689999----9999722896189974--78---65999999985688113771103426
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHH
Q ss_conf 35450278887413665318999744679999998888876516655558987878764158658998761486204899
Q gi|254781176|r 163 TLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQ 242 (502)
Q Consensus 163 ~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~ 242 (502)
.+=| +..+. .||.=|=.+.|+++.=-.-.|+--|. ==|.|+|+|+.-+|- =|..
T Consensus 230 GVAV-------k~vG~-~TF~LC~~YvDd~v~VdtD~vCaAiK------D~F~dtRav~EPaGA------------LalA 283 (508)
T TIGR01124 230 GVAV-------KEVGD-ETFRLCQQYVDDIVRVDTDEVCAAIK------DLFEDTRAVLEPAGA------------LALA 283 (508)
T ss_pred CEEE-------HHHHH-HHHHHHHHHCCCEEEECCHHHHHHHH------HHHHCHHHHCCHHHH------------HHHH
T ss_conf 7354-------00434-45899997445548626445544555------332221221050267------------8999
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEE
Q ss_conf 99887527010002245553789996168888999999999999974168863999853134657547
Q gi|254781176|r 243 AAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVI 310 (502)
Q Consensus 243 a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~ 310 (502)
=.++=+..-=+. ..=|+.|++|-.|-++-+--.++ |.++++.=+=||-+++=|+-|.-.
T Consensus 284 GLK~Yva~~g~~-------~~~Lvai~sGAN~NF~rLRyVsE--R~E~GEqREAllAVTIPE~~Gsfl 342 (508)
T TIGR01124 284 GLKKYVAKHGIE-------GQTLVAITSGANMNFHRLRYVSE--RTELGEQREALLAVTIPEQPGSFL 342 (508)
T ss_pred HHHHHHHHCCCC-------CCEEEEEECCCCCCCCCCCCHHH--CCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 999999954899-------86468871367545363430101--002455850223671689887489
No 269
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=52.87 E-value=15 Score=16.01 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred EECCCHHHHHHHHHHCCCC-CCEEEEECCCHHHHHHC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9668147999999985899-84499982557885518-997048515542556788888389999999729999997269
Q gi|254781176|r 21 GVGGGGGNAVNNMVSSGLQ-GVNFVVANTDAQALMMS-KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDK 98 (502)
Q Consensus 21 g~gg~g~n~~~~~~~~~~~-~~~~~~~ntd~~~l~~~-~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~ 98 (502)
|-|--|.+.+.+|.+.|-. .|..+..+.....+... +......+-..+ .+.+.+.+++++
T Consensus 5 g~GFIGs~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~gDl------------------~d~~~l~~~~~~ 66 (280)
T pfam01073 5 GGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITYIEGDV------------------TDKQDLRRALQG 66 (280)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEECCC------------------CCHHHHHHHHHC
T ss_conf 67599999999999779975799987889867888732258875999128------------------999999999847
Q ss_pred CCEEEEEECCCCCCCCC-----------HHHHHHHHHHHCCCEEEEE
Q ss_conf 98999980367666740-----------7899999998649849999
Q gi|254781176|r 99 THMCFVTAGMGGGTGTG-----------AAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 99 ~~~~~~~ag~gggtgtg-----------~~p~ia~~a~~~~~~~~~~ 134 (502)
.|.||-+|+..+-.+.. ++--+.+.|++.|+-.+-+
T Consensus 67 ~D~V~H~Aa~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~gvkr~V~ 113 (280)
T pfam01073 67 SDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVY 113 (280)
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99899721223555667999999999999999999999647770799
No 270
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=52.85 E-value=15 Score=16.01 Aligned_cols=48 Identities=38% Similarity=0.433 Sum_probs=32.2
Q ss_pred HHHHHHHHCC----CCEEEEEECCC-CCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9999997269----98999980367-666740789999999864984999950430
Q gi|254781176|r 89 IDEITEMLDK----THMCFVTAGMG-GGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 89 ~~~i~~~~~~----~~~~~~~ag~g-ggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
-+||.+-++| -.+-.++||.| |||=||++--+ |-.+.-.+-+||+ =||
T Consensus 164 g~Ei~~q~EGlnlfdk~~~~VAg~GTGGTItGi~ryL-K~~~~~~~~ivGa--DP~ 216 (527)
T TIGR01137 164 GPEILEQCEGLNLFDKLDMFVAGVGTGGTITGIARYL-KDESNPKVRIVGA--DPE 216 (527)
T ss_pred HHHHHHHHCCCCHHCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCEEEEEE--CCC
T ss_conf 5899986057301212117885057883155455654-3213893389987--698
No 271
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=52.70 E-value=15 Score=15.99 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97299999972699899998036766674078999999986498499995043000406788889999999998633354
Q gi|254781176|r 86 EECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLI 165 (502)
Q Consensus 86 ~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i 165 (502)
..-...+...+.+.|.|+|. -.|.|+=+- ...+.++||+.|+.++ +=..|-. +.+|....+
T Consensus 131 ~~l~~~~~~~l~~~d~VIlS-DY~KG~L~~-~~~iI~~Ar~~gipVi-VDPK~~d----------------~~~y~ga~l 191 (473)
T PRK11316 131 QPLLERIEQALPSIGALVLS-DYAKGALAS-VQAMIQLARKAGVPVL-IDPKGTD----------------FERYRGATL 191 (473)
T ss_pred HHHHHHHHHHHHHCCEEEEE-CCCCCHHHH-HHHHHHHHHHCCCCEE-EECCCCC----------------HHHCCCCCC
T ss_conf 99999999876218889995-556315677-9999999997399799-9499867----------------444179841
Q ss_pred HHHHHHHHHHC
Q ss_conf 50278887413
Q gi|254781176|r 166 VIPNQNLFRIA 176 (502)
Q Consensus 166 ~i~n~~l~~~~ 176 (502)
+.||.+=++.+
T Consensus 192 itPN~~E~~a~ 202 (473)
T PRK11316 192 LTPNLSEFEAV 202 (473)
T ss_pred CCCCHHHHHHH
T ss_conf 26788999986
No 272
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.57 E-value=15 Score=15.98 Aligned_cols=50 Identities=34% Similarity=0.532 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH--HCCCEEEEEEECCCCCC
Q ss_conf 99999729999997269989999803676667407899999998--64984999950430004
Q gi|254781176|r 82 RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIAR--NKGVLTVGVVTKPFHFE 142 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~--~~~~~~~~~v~~pf~~e 142 (502)
+.||....+.++. +||. |=||||-+...|-.+++ +.+ +.+..|++-|..+
T Consensus 8 ~~aa~~A~~~v~~-----gmvi-----GlGTGST~~~fI~~Lg~~~~~e-~~i~~V~TS~~t~ 59 (227)
T COG0120 8 KAAAKAALEYVKD-----GMVI-----GLGTGSTAAYFIEALGRRVKGE-LDIGGVPTSFQTE 59 (227)
T ss_pred HHHHHHHHHHHCC-----CCEE-----EECCCHHHHHHHHHHHHHHCCC-CCEEEEECCHHHH
T ss_conf 9999999998249-----9789-----9767578999999997774067-6379996979999
No 273
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=52.03 E-value=15 Score=15.92 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=35.8
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999726998999980367666740789999999864984999950430004067888899999999986333
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDT 163 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~ 163 (502)
+.++| |.+.=+|.|+|+|-++ ...++..++.=|.=+++-..+|. ....+-|.++++..|.
T Consensus 4 lt~~l-gi~~PIiqapM~~vs~---~~La~AVs~aGglG~l~~~~~~~--------e~l~~~i~~~~~~td~ 63 (307)
T TIGR03151 4 LCDLL-GIEYPIFQGGMAWVAT---GSLAAAVSNAGGLGIIGAGNAPP--------DVVRKEIRKVKELTDK 63 (307)
T ss_pred HHHHH-CCCCCEECCCCCCCCC---HHHHHHHHHCCCEEEECCCCCCH--------HHHHHHHHHHHHHCCC
T ss_conf 76976-8994978788777787---89999998089841667888999--------9999999999985279
No 274
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; InterPro: IPR013345 This entry represents a group of adenosylcobalamin (AdoCbl or coenzymeB12)-dependent ribonucleotide reductases (RNR) related to the characterised species from Lactococcus leichmannii . RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies NrdJ enzymes only in cyanobacteria, Lactococcus and certain bacteriophages. A separate model (IPR013344 from INTERPRO) identifies a larger group of divergent B12-dependent RNR's.; GO: 0000166 nucleotide binding, 0008998 ribonucleoside-triphosphate reductase activity, 0016960 class II ribonucleotide reductase activity, 0031419 cobalamin binding.
Probab=51.74 E-value=4.4 Score=19.93 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred EEEEEECCCCCCCCCH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999803676667407-899999998649849999504300040678888999999999863335450278887413665
Q gi|254781176|r 101 MCFVTAGMGGGTGTGA-APIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDK 179 (502)
Q Consensus 101 ~~~~~ag~gggtgtg~-~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~ 179 (502)
++|-.+=+|||+|--. ...|+.+-+-...|-|-.|+--=.---..+.++..-+...+...+|++ .+.+-+-+
T Consensus 142 ~~~~~lm~GcGvG~~~~~~~l~~~P~v~~~i~v~~v~d~~~~~~~~~~e~~~~~~~~~~~~v~si-------~y~~~Dsr 214 (827)
T TIGR02505 142 FLFDLLMKGCGVGASVERSLLDQLPRVKQEIKVVLVVDEEKEAYDDRVEAGDLSKEEDSVKVDSI-------AYVVEDSR 214 (827)
T ss_pred HHHHHHHHCCCCCEEECHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCHHHHEEEEEEE-------EEECCCHH
T ss_conf 99999971784201124032410788666414889740772557765442144203220243167-------88517118
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEE-ECCCCCHHHHHHH
Q ss_conf 31899974467999999888887651665555898787876415865899876-1486204899998
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTG-EASGHGRGIQAAE 245 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g-~~~g~~r~~~a~~ 245 (502)
.++..|+ ..|... +.=.+.=.+.--+=+||+|||.+ |..+=|+| .|+|+-...++..
T Consensus 215 ~GWv~A~----~~L~~~-~f~~~~a~r~~~l~lDlS~vRp~----G~~LkGFGG~AsGp~~L~~~~~ 272 (827)
T TIGR02505 215 EGWVKAV----ALLIDL-HFDEQVADRKRKLVLDLSDVRPA----GEKLKGFGGTASGPVPLAKMLT 272 (827)
T ss_pred HHHHHHH----HHHHHH-CCHHHCCCCEEEEEEEEECCCCC----CCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8999999----999862-15311688705688865142412----6610126644567388999999
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.71 E-value=16 Score=15.88 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCCCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6766674078999999986----49849999504300040678888999999999863335
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARN----KGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~----~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
|=|-||.|=+-.|||+|-. .|..-||++|+=.. | --+.+.|+-|++-+
T Consensus 215 lVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~Dty-----R----igA~eQLk~Ya~il 266 (412)
T PRK05703 215 LVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTY-----R----IGAVEQLKTYAKIM 266 (412)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC-----C----HHHHHHHHHHHHHC
T ss_conf 9888887567699999999999729981799983767-----7----77999999999971
No 276
>KOG0238 consensus
Probab=51.52 E-value=12 Score=16.65 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCC
Q ss_conf 68147999999985899844999825578855189970485155425
Q gi|254781176|r 23 GGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGIT 69 (502)
Q Consensus 23 gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~ 69 (502)
|--.|-++....+.|++-|-. --+.|...|....|+.-+.||...+
T Consensus 7 GEIAcRVirTakkmGI~tVAV-~Sd~D~~SlHVk~ADeav~ig~a~~ 52 (670)
T KOG0238 7 GEIACRVIRTAKKMGIRTVAV-YSDADRNSLHVKMADEAVCIGPAPA 52 (670)
T ss_pred CCEEEHHHHHHHHHCCEEEEE-ECCCCCCCCEEECCCCEEECCCCCH
T ss_conf 606511566799729758999-7157634320000451034288734
No 277
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=51.50 E-value=16 Score=15.86 Aligned_cols=214 Identities=12% Similarity=0.071 Sum_probs=94.8
Q ss_pred HHHHHHHCCCCCCEEEEE-------CCCH---HHHHHC--CCCEEE-EECCCCCCCC---CCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999858998449998-------2557---885518--997048-5155425567---88888389999999729999
Q gi|254781176|r 29 AVNNMVSSGLQGVNFVVA-------NTDA---QALMMS--KAKQII-QLGSGITEGL---GAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-------ntd~---~~l~~~--~~~~~~-~~g~~~~~g~---g~g~~~~~g~~~a~~~~~~i 92 (502)
++..+.+.|+.|||+.+. +..+ ..+... .-.-+| -+.. .|.|. =+-+|+...+++-..-+..|
T Consensus 18 a~~~aa~lGydgVEi~~~~ph~~~~~~~~~~~~~ik~l~~~~gl~v~~~~p-~~~~~~~~l~~~d~~~R~~~i~~~k~~i 96 (276)
T PRK09856 18 AFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP-ETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (276)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999849998997378765467654655799999999980986899553-2137765336798789899999999999
Q ss_pred HHHHC-CCCEEEEEECCCCCCCC-CHH--------HHHHHHHHHCCCEEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99726-99899998036766674-078--------99999998649849999504-300040678888999999999863
Q gi|254781176|r 93 TEMLD-KTHMCFVTAGMGGGTGT-GAA--------PIIAKIARNKGVLTVGVVTK-PFHFEGSRRMRVAESGIEALQETV 161 (502)
Q Consensus 93 ~~~~~-~~~~~~~~ag~gggtgt-g~~--------p~ia~~a~~~~~~~~~~v~~-pf~~eg~~r~~~a~~~~~~l~~~~ 161 (502)
.-+-+ |++.++|++|-+|-.-. ..+ -.+++.|++.|+ ++++=.+ || |.. -...+++.+.-+. .+
T Consensus 97 d~A~~Lga~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv-~l~lE~l~~~--e~~-li~~~~~~~~~~~-~v 171 (276)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPLTPY--ESN-VVCNANDVLHALA-LV 171 (276)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCCC--CCC-HHCCHHHHHHHHH-HC
T ss_conf 99998499849993687778889799999999999999999997399-8999517611--142-0068999999998-57
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCHHHHHHHHCCCCEE---EEEEEEC
Q ss_conf 33545027888741366531899974467999999----8888876516655558987878764158658---9987614
Q gi|254781176|r 162 DTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSG----VSCITDLMIKEGLINLDFADVRSVMRNMGRA---MMGTGEA 234 (502)
Q Consensus 162 d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~----v~~i~~~i~~~g~in~df~d~~~v~~~~g~a---~~g~g~~ 234 (502)
++--+-.+=-+...+-...++.++|...-+-|..- ..|-.+-=..||.=++||..+-..|+..|.. .+=+..
T Consensus 172 ~~~~~~~~lD~~h~~~~~~~~~~~~~~~g~~l~HvHi~D~~g~~d~hl~pG~G~~d~~~il~~L~~~gY~G~vsvEl~~- 250 (276)
T PRK09856 172 PSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIDRGYEGYCTVELVT- 250 (276)
T ss_pred CCCCEEEEEECHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC-
T ss_conf 9986489985413755389999999985887469987679998667737999877889999999985998159999725-
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 862048999988752
Q gi|254781176|r 235 SGHGRGIQAAEAAVA 249 (502)
Q Consensus 235 ~g~~r~~~a~~~a~~ 249 (502)
.=.+-...+++++|.
T Consensus 251 ~y~~~P~~~a~~sl~ 265 (276)
T PRK09856 251 MYMNEPRLYARQALE 265 (276)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 765799999999999
No 278
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=51.38 E-value=16 Score=15.85 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 67888-88389999999729999997269989999803676667407899999998649849999504300040678888
Q gi|254781176|r 71 GLGAG-SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRV 149 (502)
Q Consensus 71 g~g~g-~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~ 149 (502)
|.|.| ||||+=---|. +.|+.+|+||+- +.+|+-+ =|--++.++++ -+. ....+-.|..++.+...++
T Consensus 6 gVGvGPGDPeLlTlkAi-------~~L~~adVi~~P-~~~g~~s-lAr~Iv~~y~~-~~~-~~~~l~fPm~~~~~e~~~~ 74 (234)
T COG2243 6 GVGLGPGDPELLTLKAI-------RALKKADVVYVP-SKKGKGS-LAREIVEDYLT-PGS-RIVELHFPMTTDMREELED 74 (234)
T ss_pred EEECCCCCHHHHHHHHH-------HHHHHCCEEEEE-CCCCCCC-HHHHHHHHHCC-CCC-EEEEEEECCCCCHHHHHHH
T ss_conf 99558998346239999-------988549989983-6887643-69999998669-886-1567870567862889999
Q ss_pred HH
Q ss_conf 99
Q gi|254781176|r 150 AE 151 (502)
Q Consensus 150 a~ 151 (502)
+.
T Consensus 75 ~~ 76 (234)
T COG2243 75 AW 76 (234)
T ss_pred HH
T ss_conf 99
No 279
>PTZ00175 diphthine synthase; Provisional
Probab=51.07 E-value=16 Score=15.82 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999729999997269989999803676667407899999998649849999
Q gi|254781176|r 82 RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
|...++..++|.+.-+..+++|+++|===+.+|...-++ -|+++||-+-.|
T Consensus 59 R~~vE~~~~~il~~A~~~~ValLvvGDP~~ATTH~dL~l--rA~e~gI~~~VI 109 (272)
T PTZ00175 59 REMVEEGCDKILEEAKDKNVALLVVGDPFCATTHTDLVL--RAKEQGIDVEVI 109 (272)
T ss_pred HHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH--HHHHCCCCEEEE
T ss_conf 888735899999863229889997588666353799999--999879988997
No 280
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=51.04 E-value=16 Score=15.81 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 7269989999803676667407899999998649849999
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
.+++.|+||.+ |+.|++.-+++...+.|+.+|-.
T Consensus 63 ~~~~~Dvvf~a------lp~~~s~~~~~~~~~~g~~VIDl 96 (121)
T pfam01118 63 DLKDVDIVFFA------LPAGVSKELAPKLLEAGAVVIDL 96 (121)
T ss_pred HHCCCCEEEEC------CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 85389899983------87689999999987159899878
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=50.96 E-value=13 Score=16.36 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=22.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 61799996681479999999858998449998
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVA 46 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ 46 (502)
-||.|||..|+|-.++.+-+...+ |+.++-+
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~-~ip~~~L 32 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHL 32 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEEEC
T ss_conf 679998899987999999999988-9697964
No 282
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=50.92 E-value=11 Score=16.91 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=12.6
Q ss_pred HHHHHHHCCCCE--EEEEECCCCCCC
Q ss_conf 999997269989--999803676667
Q gi|254781176|r 90 DEITEMLDKTHM--CFVTAGMGGGTG 113 (502)
Q Consensus 90 ~~i~~~~~~~~~--~~~~ag~gggtg 113 (502)
+.|+++|..+.= |||.-|.||||.
T Consensus 102 ~~i~~~~~~~~d~dvviaP~~gGGTn 127 (210)
T COG1920 102 EHIERALSAAKDADVVIAPGRGGGTN 127 (210)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCEE
T ss_conf 99999997347776898207999667
No 283
>TIGR01078 arcA arginine deiminase; InterPro: IPR003876 This is a family of arginine deiminases, 3.5.3.6 from EC. The aligned region corresponds to the C-terminal of the protein. These enzymes catalyse the conversion of arginine + H2O to citrulline + NH3. Also found in this family is the Streptococcus anti tumor glycoprotein .; GO: 0016990 arginine deiminase activity, 0006527 arginine catabolic process.
Probab=50.85 E-value=14 Score=16.11 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=13.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 998761486204899998875270100022455537899
Q gi|254781176|r 228 MMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLI 266 (502)
Q Consensus 228 ~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~ 266 (502)
++|+||=+. ..+| ..|.--|+.+ .-.+|++||.
T Consensus 235 ~iG~SERT~----~q~v-e~LA~~LF~~-k~~~f~~vlA 267 (421)
T TIGR01078 235 AIGISERTS----AQSV-EKLAKSLFAN-KEGGFKKVLA 267 (421)
T ss_pred EEEECCCCC----HHHH-HHHHHHHHHC-CCCCCCEEEE
T ss_conf 996124488----8899-9999999840-3376555899
No 284
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.66 E-value=16 Score=15.77 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=43.5
Q ss_pred EEEEEECCCHHHHHHHHHHC-CCCCCEEEEE-CCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79999668147999999985-8998449998-255788551899704851554255678888838999999972999999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-GLQGVNFVVA-NTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-~~~~~~~~~~-ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
|.++|+|+.|.-+-.--.+. .+.|.+-++. ++..|+.. ...
T Consensus 1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~-------------------------------------~~~ 43 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHAS-------------------------------------LLS 43 (87)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH-------------------------------------HHC
T ss_conf 9999717569999999999875149417998952877764-------------------------------------651
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 72699899998036766674078999999986498499995
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
.++.-|+|+...-=|- |--.-..+++||+.|+-+|++.
T Consensus 44 ~~~~~D~vi~iS~SG~---t~e~~~~~~~ak~~g~~vi~IT 81 (87)
T cd04795 44 LLRKGDVVIALSYSGR---TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCCEEEEEECCCC---CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3789998999979979---8899999999998799899983
No 285
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=50.64 E-value=16 Score=15.77 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=15.7
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 6766674078999999986498499
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
+||.+|+|-+-+-+.+|..+||-+|
T Consensus 267 IGGaSGvGKSTlAseLA~RLGI~~V 291 (492)
T PRK12337 267 LGGVSGTGKSVLAAELAYRLGITRV 291 (492)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 6078886688899999996098810
No 286
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=50.40 E-value=16 Score=15.74 Aligned_cols=188 Identities=20% Similarity=0.317 Sum_probs=101.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCC-----------CCEEE----------EECCCHHHHHHCCCC--EEEEECCCCCC
Q ss_conf 86179999668147999999985899-----------84499----------982557885518997--04851554255
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQ-----------GVNFV----------VANTDAQALMMSKAK--QIIQLGSGITE 70 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~-----------~~~~~----------~~ntd~~~l~~~~~~--~~~~~g~~~~~ 70 (502)
+-|+.|||-|=||-.+-..+-+.|.. ||=++ .+.+....|++.-+. .--++|+++|
T Consensus 142 ~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvGkt~T- 220 (462)
T TIGR01316 142 KKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVGKTVT- 220 (462)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECCCHH-
T ss_conf 8779998468214688999974798699997148998567536888548757889888876326637994437505112-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 678888838999999972999999726--998999980367666740789999999864984999950430004067888
Q gi|254781176|r 71 GLGAGSHPEVGRAAAEECIDEITEMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMR 148 (502)
Q Consensus 71 g~g~g~~~~~g~~~a~~~~~~i~~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~ 148 (502)
+.++++ |.|=|||-.|=| ++ | =.+.+|.
T Consensus 221 ---------------------L~eL~~~YGfDAVFIgtGAG--~p-----------k------------l~NipG~---- 250 (462)
T TIGR01316 221 ---------------------LEELLEKYGFDAVFIGTGAG--LP-----------K------------LLNIPGE---- 250 (462)
T ss_pred ---------------------HHHHHHHCCCCEEEEEECCC--CC-----------E------------ECCCCCH----
T ss_conf ---------------------88888751970799950689--87-----------0------------0167843----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 89999999998633354502788874136653189997446799999988888765166555589878787641586589
Q gi|254781176|r 149 VAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAM 228 (502)
Q Consensus 149 ~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~ 228 (502)
.|-.+|.. ++.|.+.- | |---||+.--|=..- |+.+
T Consensus 251 ----------------------~L~gvysA-----------~dfLtR~n-----L-----mKAyefp~~dtPv~~-gK~v 286 (462)
T TIGR01316 251 ----------------------ELKGVYSA-----------NDFLTRVN-----L-----MKAYEFPKKDTPVEV-GKKV 286 (462)
T ss_pred ----------------------HHCCHHHH-----------HHHHHHHH-----H-----HHHHCCCCCCCCEEE-CCEE
T ss_conf ----------------------43400223-----------46887777-----7-----654236678875654-4768
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC---
Q ss_conf 9876148620489999887527010002245553789996-168888999999999999974168863999853134---
Q gi|254781176|r 229 MGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISI-TGGSDLTLFEVDEAATRIREEVDSEANIILGATFDE--- 304 (502)
Q Consensus 229 ~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i-~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~--- 304 (502)
+=+|-+ +-|++++..|+. | ||-.+-+.- .+-.|||=.+ +.|...-++-..+=|=...-+
T Consensus 287 vviGgG---ntAvD~artAlR---L------GaEqvh~~YRrtRedmtAr~-----EEi~ha~eEGVkfhfl~Qpve~iG 349 (462)
T TIGR01316 287 VVIGGG---NTAVDAARTALR---L------GAEQVHVVYRRTREDMTARE-----EEIKHAEEEGVKFHFLLQPVEVIG 349 (462)
T ss_pred EEECCC---HHHHHHHHHHHH---C------CCCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 998785---367877766645---2------84236998854777513669-----999988538928998742168986
Q ss_pred CCCCEEEEE
Q ss_conf 657547999
Q gi|254781176|r 305 ALEGVIRVS 313 (502)
Q Consensus 305 ~~~~~~~v~ 313 (502)
+-.|+|+-.
T Consensus 350 dE~G~V~av 358 (462)
T TIGR01316 350 DEEGEVKAV 358 (462)
T ss_pred CCCCEEEEE
T ss_conf 576518999
No 287
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=50.23 E-value=8.8 Score=17.71 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=16.3
Q ss_pred EEECCCCCCCCCHHHH---------------HHHHHHHCCC
Q ss_conf 9803676667407899---------------9999986498
Q gi|254781176|r 104 VTAGMGGGTGTGAAPI---------------IAKIARNKGV 129 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~---------------ia~~a~~~~~ 129 (502)
+-||||||....||-. ..++|++.|+
T Consensus 97 v~aGLGGGSsdAAa~L~~Ln~l~~~~ls~~~L~~ia~~lGs 137 (308)
T PRK02534 97 IGAGLAGGSSDAAAVLVGLNLLWGLGLTQPELESLAAELGS 137 (308)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 66788840689999999999984799998999998751168
No 288
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.22 E-value=16 Score=15.72 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCCCCCCHHHHHHHHHHHC------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67666740789999999864------9849999504300040678888999999999863335
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNK------GVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~------~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
|=|=||.|=+-.|||+|..+ .-+.||++|+=- -| -.+.+.|+.|++-+
T Consensus 179 lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~Dt-----yR----igAveQLktya~il 232 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-----YR----IGAKKQIQTYGDIM 232 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-----CC----HHHHHHHHHHHHHH
T ss_conf 98998875787999999999986267677379998078-----75----88999999999997
No 289
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=50.15 E-value=14 Score=16.11 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=56.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC
Q ss_conf 99998036766674078999999986498499995043000406788889999999998633-35450278887413665
Q gi|254781176|r 101 MCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVD-TLIVIPNQNLFRIANDK 179 (502)
Q Consensus 101 ~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d-~~i~i~n~~l~~~~~~~ 179 (502)
++++ +||.+|+|-+-+-+.+|..+|+-+|- .+-.-.|=- |.-...+-...|-..+= +.-.++. -....
T Consensus 93 liIL---igGtsGvGKSTlA~~LA~rLgI~~vi--sTD~IREVm-R~~~~~el~P~Lh~SSy~Awk~l~~-----~~~~~ 161 (306)
T PRK04220 93 IIIL---IGGASGVGTSTIAFELASRLGIRSVI--GTDSIREVM-RKIISKELLPTLHESSYTAWKSLRR-----PPWEE 161 (306)
T ss_pred EEEE---EECCCCCCHHHHHHHHHHHHCCCEEE--CCHHHHHHH-HHCCCCCCCCHHHCCCHHHHHCCCC-----CCCCC
T ss_conf 7999---85899887899999999970988342--221699999-8524830175132275131002367-----87786
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHCCCCEEEE
Q ss_conf 318999744679999998888876516655------55898787876415865899
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLMIKEGL------INLDFADVRSVMRNMGRAMM 229 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i~~~g~------in~df~d~~~v~~~~g~a~~ 229 (502)
-.+...|..-=+.+..++.+|.+=-.+.|. ++|...-++.-+...+.+++
T Consensus 162 ~~~I~Gf~~Q~~~V~~gI~aiI~Ra~~eg~slIIEGVHlvP~~i~~~~~~~~~vi~ 217 (306)
T PRK04220 162 PDHILGFERHVEPVLVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLNMPNVFM 217 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 57999999999999999999999999729968998430377887777643883899
No 290
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=50.05 E-value=16 Score=15.71 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=29.2
Q ss_pred EEEECCCCCCCCCH----HHHHHHHHHHCCC--EEEEEEECCCC
Q ss_conf 99803676667407----8999999986498--49999504300
Q gi|254781176|r 103 FVTAGMGGGTGTGA----APIIAKIARNKGV--LTVGVVTKPFH 140 (502)
Q Consensus 103 ~~~ag~gggtgtg~----~p~ia~~a~~~~~--~~~~~v~~pf~ 140 (502)
-|+-|-|||-|||= +-|.++|....+- .-+++++.=-.
T Consensus 10 c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~Y 53 (220)
T TIGR00235 10 CIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNY 53 (220)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 17997017661015678999999999983140014577503244
No 291
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=50.02 E-value=16 Score=15.70 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.4
Q ss_pred CEEEEEEEEC
Q ss_conf 6589987614
Q gi|254781176|r 225 GRAMMGTGEA 234 (502)
Q Consensus 225 g~a~~g~g~~ 234 (502)
...++|.|-+
T Consensus 128 ~vlIlGaGGa 137 (289)
T PRK12548 128 KLTIIGAGGA 137 (289)
T ss_pred EEEEEECCHH
T ss_conf 4799952167
No 292
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=49.93 E-value=16 Score=15.69 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=10.9
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 999972699899998036766674
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGT 114 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgt 114 (502)
.|+++++.+|+|++|.|+|-|.--
T Consensus 49 ~l~~~~~~~DliittGG~g~g~~D 72 (140)
T pfam00994 49 ALAAAADEADVVITTGGTGPGPDD 72 (140)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 999973269999987887789898
No 293
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.61 E-value=17 Score=15.66 Aligned_cols=48 Identities=31% Similarity=0.357 Sum_probs=33.9
Q ss_pred CCCCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6766674078999999986----49849999504300040678888999999999863335
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARN----KGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~----~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
|=|-||.|=+-.|||+|-. .|.--||++|+=-. | --+.+.|+-|.+-+
T Consensus 181 lVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTY-----R----IgAvEQLktYa~Il 232 (404)
T PRK06995 181 LVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY-----R----IGGHEQLRIYGKIL 232 (404)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-----C----HHHHHHHHHHHHHC
T ss_conf 8668887637589999999999838983799976875-----4----78999999999875
No 294
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=49.49 E-value=16 Score=15.80 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=90.0
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999803676667407899999998649849999504300040678888999999999863335450278887413665
Q gi|254781176|r 100 HMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDK 179 (502)
Q Consensus 100 ~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~ 179 (502)
|+++|=+||| |||||---+..++..|. -|-+|-+-- . -|+----+||..+--|.|+.=.-.-+|=.+=|-.=
T Consensus 1 D~LivGgG~g---gcGaAfEA~yWg~~~GL-Ki~lveKA~-~---eRSGAVAQGLsAINtY~g~~Grs~~eN~~eDyVRy 72 (651)
T TIGR02061 1 DVLIVGGGLG---GCGAAFEAAYWGKKKGL-KIVLVEKAA-V---ERSGAVAQGLSAINTYLGLRGRSERENDAEDYVRY 72 (651)
T ss_pred CEEEECCCCC---CHHHHHHHHHHHCCCCC-EEEEEECCC-C---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 9478717855---20278999987406883-799961146-5---42215676678988651677665668882110321
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEE-CCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf 3189997446799999988888--76516655558987878764158658998761-486-2048999988752701000
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCIT--DLMIKEGLINLDFADVRSVMRNMGRAMMGTGE-ASG-HGRGIQAAEAAVANPLLDE 255 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~--~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~-~~g-~~r~~~a~~~a~~~pll~~ 255 (502)
..+. .-|++ |||. .-==+|| |--....+=|.=+|-.++ +.= +..|.+.+-+.|.. -|
T Consensus 73 vr~D-------------lMGlvREDL~f-D~aRHVD--~~VHlFE~WGLP~w~~p~dG~y~eGaaakvaGkslrk---Gd 133 (651)
T TIGR02061 73 VRLD-------------LMGLVREDLVF-DVARHVD--DAVHLFEEWGLPLWKKPKDGKYLEGAAAKVAGKSLRK---GD 133 (651)
T ss_pred EHCC-------------HHHHHHHHHHH-HHHCCCC--CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CC
T ss_conf 1000-------------12346788874-1201417--5100122168963318688874231144442012103---78
Q ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCE-----EEEEEECCCCCCEE------------------EE
Q ss_conf 22455537899961688889999999999999741688639-----99853134657547------------------99
Q gi|254781176|r 256 ASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANI-----ILGATFDEALEGVI------------------RV 312 (502)
Q Consensus 256 ~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~i-----i~G~~~d~~~~~~~------------------~v 312 (502)
..++.-+. -|=|. |.+.+- -+++.-+..++.|-|| |+-+-.|++--..| +-
T Consensus 134 aPvReGrW-QIMIh-GESYKp----IvAEAAK~a~g~~~ni~eRifi~~LL~Dkn~PNriAGAVGFnvR~~~~hvFKakt 207 (651)
T TIGR02061 134 APVREGRW-QIMIH-GESYKP----IVAEAAKKAVGKDRNIFERIFIVKLLLDKNKPNRIAGAVGFNVREGEYHVFKAKT 207 (651)
T ss_pred CCCCCCCE-EEEEC-CCCCCH----HHHHHHHHHCCCCCCCEEHEEEEEEECCCCCCCCEECCCEEEECCCCEEEEECCE
T ss_conf 87237741-58754-766604----8999987522754441101021100026888871220110010178656987124
Q ss_pred EEEEEC
Q ss_conf 998513
Q gi|254781176|r 313 SVVATG 318 (502)
Q Consensus 313 ~~iatg 318 (502)
.|||||
T Consensus 208 vivAaG 213 (651)
T TIGR02061 208 VIVAAG 213 (651)
T ss_pred EEEECC
T ss_conf 566306
No 295
>PRK04344 consensus
Probab=49.25 E-value=12 Score=16.61 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 876415865899876148620489999
Q gi|254781176|r 218 RSVMRNMGRAMMGTGEASGHGRGIQAA 244 (502)
Q Consensus 218 ~~v~~~~g~a~~g~g~~~g~~r~~~a~ 244 (502)
...|+.+|.+++|+-+.. +.|.+|.
T Consensus 242 ~~~mSGSGstvF~lf~~~--~~A~~~~ 266 (284)
T PRK04344 242 AALMSGSGPTVFGLCRKE--SRAQRIY 266 (284)
T ss_pred EEEEECCCCCEEEEECCH--HHHHHHH
T ss_conf 689977251248998999--9999999
No 296
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=49.12 E-value=6.1 Score=18.90 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=34.3
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHC-CCEE-E-EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999980367666740789999999864-9849-9-99504300040678888999999999863335450278887413
Q gi|254781176|r 101 MCFVTAGMGGGTGTGAAPIIAKIARNK-GVLT-V-GVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIA 176 (502)
Q Consensus 101 ~~~~~ag~gggtgtg~~p~ia~~a~~~-~~~~-~-~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~ 176 (502)
=++++|||||.| |++|-.+- ..+. + -+|--|-+-....|.-..+.|.. -+|-.+|..+.+++++.
T Consensus 68 d~ivIAGMGG~l-------I~~IL~~~~~~~~~~~~lILQP~~~~~~lR~~L~~~g~~----I~~E~lv~e~~~~YeIi 135 (204)
T pfam04816 68 DVIVIAGMGGTL-------IADILEQGKNKLAGVKRLILQPNINEEELREWLSQNSWQ----IKAETILEERGKIYEIL 135 (204)
T ss_pred CEEEEECCCHHH-------HHHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHHCCCE----EEEEEEEEECCEEEEEE
T ss_conf 779994868999-------999998184553575779995797859999999988997----88878997899889999
No 297
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=48.93 E-value=17 Score=15.58 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=13.9
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98036766674078999999986498499995
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
|+=.-.|-||-| +|-+|+.+|--.+.|+
T Consensus 65 IVE~TSGNTGIa----LA~vaa~~Gy~~~ivm 92 (300)
T COG0031 65 IVEATSGNTGIA----LAMVAAAKGYRLIIVM 92 (300)
T ss_pred EEEECCCHHHHH----HHHHHHHCCCCEEEEE
T ss_conf 997089727999----9999998199289995
No 298
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=48.58 E-value=11 Score=16.89 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=11.2
Q ss_pred HHCCCCEEEEEEEEC
Q ss_conf 641586589987614
Q gi|254781176|r 220 VMRNMGRAMMGTGEA 234 (502)
Q Consensus 220 v~~~~g~a~~g~g~~ 234 (502)
.|+.+|.+++|+-.|
T Consensus 240 ~mSGSGst~Fal~r~ 254 (254)
T PRK04181 240 FFSGSGSSFFRVKRA 254 (254)
T ss_pred EEECCCHHHEEEEEC
T ss_conf 997307214589739
No 299
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=48.53 E-value=17 Score=15.54 Aligned_cols=166 Identities=21% Similarity=0.348 Sum_probs=98.5
Q ss_pred HHCCCEEEEEEE-CCCHHH-HHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCC--CCCCCCCCCCHHHHHHHHH
Q ss_conf 543861799996-681479-999999858998449998255788551899704851554--2556788888389999999
Q gi|254781176|r 11 TELKPRITVFGV-GGGGGN-AVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSG--ITEGLGAGSHPEVGRAAAE 86 (502)
Q Consensus 11 ~~~~~~i~v~g~-gg~g~n-~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~--~~~g~g~g~~~~~g~~~a~ 86 (502)
..+....++.|. ||-=+. .+..+.+.++. .+|+-+.++ .+.-.||.=+.. .|+=.+.| |.+-.+.-+
T Consensus 47 ~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~-~~fv~v~g~------TRinvki~~~~~~~~Tein~~G--p~is~~~~~ 117 (310)
T COG1105 47 KDLGIPVTALGFLGGFTGEFFVALLKDEGIP-DAFVEVKGD------TRINVKILDEEDGEETEINFPG--PEISEAELE 117 (310)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHCCCC-CEEEECCCC------CEEEEEEEECCCCCEEEECCCC--CCCCHHHHH
T ss_conf 9729971699966886578999998763898-307990588------7356999717888468704889--988999999
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72999999726998999980367666740789999999864984999950430004067888899999999986333545
Q gi|254781176|r 87 ECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIV 166 (502)
Q Consensus 87 ~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~ 166 (502)
+..+.++..++..|+|.|.-.+=.|-+-..---+.+++|+.|+-++- ...|.. .. ++|+ .. -.++
T Consensus 118 ~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vil------D~Sg~~-L~---~~L~---~~--P~lI 182 (310)
T COG1105 118 QFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVIL------DTSGEA-LL---AALE---AK--PWLI 182 (310)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE------ECCHHH-HH---HHHC---CC--CCEE
T ss_conf 99999997566488999908899999979999999999865983999------798599-99---9870---79--9389
Q ss_pred HHHHHHHHH-CCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027888741-3665-318999744679999998888
Q gi|254781176|r 167 IPNQNLFRI-ANDK-TTFADAFSMADQVLYSGVSCI 200 (502)
Q Consensus 167 i~n~~l~~~-~~~~-~~~~~af~~~d~~l~~~v~~i 200 (502)
-||..=++. ++.. .+..+.-..|-+++.++++.+
T Consensus 183 KPN~~EL~~~~g~~~~~~~d~~~~a~~l~~~g~~~V 218 (310)
T COG1105 183 KPNREELEALFGRELTTLEDVIKAARELLAEGIENV 218 (310)
T ss_pred ECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 458899999968988974889999999987799889
No 300
>PRK10717 cysteine synthase A; Provisional
Probab=48.40 E-value=17 Score=15.53 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=17.7
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 980367666740789999999864984999950430
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
|++-=.|-||-+ +|-+|+.+|+-.+.| +|=
T Consensus 67 vveaSSGN~g~a----lA~~a~~~G~~~~iv--~p~ 96 (334)
T PRK10717 67 IVEGTAGNTGIG----LALVAAARGYKTVIV--MPE 96 (334)
T ss_pred EEEECCCCHHHH----HHHHHHHCCCCEEEE--ECC
T ss_conf 998279738999----999999809965999--568
No 301
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.28 E-value=17 Score=15.52 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=39.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH-HHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 617999966814799999998589984499982557-885518997048515542556788888
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA-QALMMSKAKQIIQLGSGITEGLGAGSH 77 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~-~~l~~~~~~~~~~~g~~~~~g~g~g~~ 77 (502)
-||.|+|-|.-|.-.-..+.+.+- .|.++.-|.+. +.++..+...|.+-|.++.+.+=+-.|
T Consensus 2 mkI~ViGaGawGtAlA~~la~n~~-~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~d 64 (325)
T PRK00094 2 MKIAVLGAGSWGTALAILLARNGH-DVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSD 64 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 889998989999999999997899-789998389999999964988656897858998389789
No 302
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.14 E-value=7.3 Score=18.31 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=28.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 17999966814799999998589984499982557885518
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
||.|||-|-.|....-.+...| .+.+..+++..+|.+.
T Consensus 4 kV~ViGaG~mG~~IA~~~a~~G---~~V~l~D~~~~~~~~~ 41 (284)
T PRK07819 4 RVGVVGAGQMGSGIAEVCARAG---VDVLVFETTEEAATAG 41 (284)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHH
T ss_conf 7999897789999999999579---9089997988999999
No 303
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=48.12 E-value=18 Score=15.50 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=19.1
Q ss_pred CCCEEEEEE------ECCC--CCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 553789996------1688--889999999999999741688639998531
Q gi|254781176|r 260 GSQGLLISI------TGGS--DLTLFEVDEAATRIREEVDSEANIILGATF 302 (502)
Q Consensus 260 ~a~~~l~~i------~~~~--~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~ 302 (502)
||+-+-+.+ .||. .|+-.....-...+.++ -.+++|++|+..
T Consensus 208 Ga~fv~v~~~e~~~~~gGYAk~~s~e~~~~q~~~~~e~-~~~aDiVItTal 257 (510)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ-AKEVDIIITTAL 257 (510)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCEEEEEEE
T ss_conf 67425521010244578503545678999999999999-742477998654
No 304
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=47.98 E-value=18 Score=15.48 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=76.2
Q ss_pred EEEEECCCCCCCC----CHHHHHHHHHHHC-CC----EE-E---EEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998036766674----0789999999864-98----49-9---99504300----040678888999999999863335
Q gi|254781176|r 102 CFVTAGMGGGTGT----GAAPIIAKIARNK-GV----LT-V---GVVTKPFH----FEGSRRMRVAESGIEALQETVDTL 164 (502)
Q Consensus 102 ~~~~ag~gggtgt----g~~p~ia~~a~~~-~~----~~-~---~~v~~pf~----~eg~~r~~~a~~~~~~l~~~~d~~ 164 (502)
-|.+-=+-||.|| -+--|||..|-++ |- .. | --|-+-=+ |---.|+. +...+++|....+.+
T Consensus 89 ~Fpvdv~Q~GsGTstNMN~NEVian~a~e~lg~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia-~~~~~~~L~~~l~~L 167 (473)
T PRK13353 89 QFIVDPIQGGAGTSMNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIA-TLNLLEGLLQAMGAL 167 (473)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 5887541179865353409999999999994787788887497643334345763676799999-999999999999999
Q ss_pred HHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEE
Q ss_conf 45027888741-------------36653189997446799999988888765166555589878787641586589987
Q gi|254781176|r 165 IVIPNQNLFRI-------------ANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGT 231 (502)
Q Consensus 165 i~i~n~~l~~~-------------~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~ 231 (502)
+-.-..|=.+. +-| +||-.-|..-=.-|.+.++-+..... --.++.-+|.| +|+
T Consensus 168 ~~~L~~KA~e~~~ivkiGRTHlQdAvP-iTlGqef~~~a~~l~r~~~Rl~~~~~-----------~l~~l~lGGTA-VGT 234 (473)
T PRK13353 168 HDVFELKAEEFDHVIKMGRTHLQDAVP-IRLGQEFKAYSRVLERDMKRIQQSRE-----------HLYEVNLGATA-VGT 234 (473)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEE-EEHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHCCCCCC-CCC
T ss_conf 999999999874112125223645534-12799999999999999999999999-----------98874478701-267
Q ss_pred EECCCCCHHHHHHH---HHHHCCCCC-CCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCC
Q ss_conf 61486204899998---875270100-0224--55537899961688889999999999999741-6886
Q gi|254781176|r 232 GEASGHGRGIQAAE---AAVANPLLD-EASM--KGSQGLLISITGGSDLTLFEVDEAATRIREEV-DSEA 294 (502)
Q Consensus 232 g~~~g~~r~~~a~~---~a~~~pll~-~~~~--~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~-~~~a 294 (502)
|-...++-...+++ ....-|+.. ++.+ ...+..++.+.|.-...-..+..+++-||-.. +|.+
T Consensus 235 G~n~~~~~~~~v~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDiRlL~SGPr~ 304 (473)
T PRK13353 235 GLNADPEYIEAVVKHLAAITGLPLVGAEDLVDATQNTDAYVEVSAALKVCAMNLSKIANDLRLLASGPRT 304 (473)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999826999999989987199962478889999675899999999999999999999999997578655
No 305
>PRK03288 consensus
Probab=47.61 E-value=14 Score=16.20 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6415865899876148620489999887
Q gi|254781176|r 220 VMRNMGRAMMGTGEASGHGRGIQAAEAA 247 (502)
Q Consensus 220 v~~~~g~a~~g~g~~~g~~r~~~a~~~a 247 (502)
-|+.+|.|++|+-... .-|.++++++
T Consensus 236 ~MSGSGSt~Fglf~~~--~~A~ki~~~~ 261 (283)
T PRK03288 236 RLTGTGACVFAEFDTE--SEARQVLEQA 261 (283)
T ss_pred CEECHHHEEEEEECCH--HHHHHHHHHC
T ss_conf 1226404179998999--9999999968
No 306
>pfam03568 Peptidase_C50 Peptidase family C50.
Probab=47.37 E-value=12 Score=16.62 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=8.0
Q ss_pred CCCCCCHHHHHHHHC
Q ss_conf 555589878787641
Q gi|254781176|r 208 GLINLDFADVRSVMR 222 (502)
Q Consensus 208 g~in~df~d~~~v~~ 222 (502)
.-.++|-.-++-++.
T Consensus 131 ~~~~~d~~lLel~l~ 145 (339)
T pfam03568 131 KWLTVDRVLLELFLG 145 (339)
T ss_pred CCCCCCHHHHHHHHC
T ss_conf 334358999999964
No 307
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=47.11 E-value=18 Score=15.39 Aligned_cols=128 Identities=21% Similarity=0.245 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 88389999999729999997269989999803676667407899999998649849999504300040678888999999
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIE 155 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~ 155 (502)
.-|.+|+....-.+. |.. -..|+|+.+.++|- .+|+ ..-|..| |-|||+|- .. - .+|+.
T Consensus 80 klP~VGy~r~LaaEG-ILs--lkPdlvi~~~~aGP------~~vl-~qLraag---V~vv~v~~--~~--~----~~~i~ 138 (300)
T COG4558 80 KLPDVGYMRQLAAEG-ILS--LKPDLVIGSEGAGP------ATVL-DQLRAAG---VPVVTVPE--QP--T----LDGIG 138 (300)
T ss_pred CCCCCCHHHHCCCCC-CEE--CCCCEEEEECCCCC------HHHH-HHHHHCC---CCEEECCC--CC--C----HHHHH
T ss_conf 488311332147542-020--37877985145586------7899-9999749---81797489--88--8----78999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
Q ss_conf -9998633354502788874136653189997446799999988888765166555589878787641586589987614
Q gi|254781176|r 156 -ALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEA 234 (502)
Q Consensus 156 -~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~ 234 (502)
++++... ++-+|+. |=+++- +-.+.+..+-.+.--.- +-.-|-=+|+..|.+.|-.|..
T Consensus 139 ~~Ir~vg~-~lgv~ek--------------ae~La~----~~~~~l~a~~~~~~~~~-~~~~Vlfvls~~Gg~~~vaG~~ 198 (300)
T COG4558 139 TKIRQVGQ-ALGVPEK--------------AEKLAE----QYEQRLEAVQANVAAKK-EPKKVLFVLSHGGGAPLVAGKG 198 (300)
T ss_pred HHHHHHHH-HHCCCHH--------------HHHHHH----HHHHHHHHHHCCCCCCC-CCCEEEEEEECCCCCEEEECCC
T ss_conf 99999999-8598079--------------999999----99999999851430026-6641899994588734760577
Q ss_pred CCCCHHHHHH
Q ss_conf 8620489999
Q gi|254781176|r 235 SGHGRGIQAA 244 (502)
Q Consensus 235 ~g~~r~~~a~ 244 (502)
.+-|-..+.+
T Consensus 199 t~ad~iI~lA 208 (300)
T COG4558 199 TAADAIIELA 208 (300)
T ss_pred CCHHHHHHHC
T ss_conf 4078999862
No 308
>PRK06721 threonine synthase; Reviewed
Probab=46.92 E-value=18 Score=15.37 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 88883899999997299999972699899998036766674078999999986498499995043
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
+|+-=+.|...+.....+ +|.+ .++++ -.|.||-+.| -+|+.+|+-++-| ||
T Consensus 55 tGSfKdRga~~~i~~a~~-----~g~~-~vv~a-SsGN~g~alA----~~aa~~G~~~~Iv--mP 106 (352)
T PRK06721 55 TGSFKDRGMVMAVAKAKE-----EGSE-AIICA-STGNTSASAA----AYAARLGMKCIIV--IP 106 (352)
T ss_pred CCCCHHHHHHHHHHHHHH-----CCCC-EEEEE-CCCHHHHHHH----HHHHHHCCCEEEE--EC
T ss_conf 648699999999999998-----1899-69997-8567999999----9999848966999--24
No 309
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=46.82 E-value=18 Score=15.36 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=17.2
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 9999997269989999803676667407899999998649849
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLT 131 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~ 131 (502)
.+++.+.|..+.-..|++| ||.--.++...+.++|..+|+-+
T Consensus 188 i~~~~~~L~~AkrPvii~G-~g~~~~~a~~~l~~lae~lg~Pv 229 (553)
T PRK08199 188 LARLAELLAAAERPLVILG-GSGWTPAAVADLRAFAERWGLPV 229 (553)
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 9999999984789889937-87355479999999999859888
No 310
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=46.73 E-value=13 Score=16.53 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=61.9
Q ss_pred CCCHHHCCCEEEEEEECCC---HHHHHHHHHHCCCCCCEEEEECCCHHHHHHC---CCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 7884543861799996681---4799999998589984499982557885518---997048515542556788888389
Q gi|254781176|r 7 NMDITELKPRITVFGVGGG---GGNAVNNMVSSGLQGVNFVVANTDAQALMMS---KAKQIIQLGSGITEGLGAGSHPEV 80 (502)
Q Consensus 7 ~~~~~~~~~~i~v~g~gg~---g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~---~~~~~~~~g~~~~~g~g~g~~~~~ 80 (502)
..+=+..||.=.=|.+=|. |...+..-+.. |.-.|.+..+.. ... .++.-+. |+.
T Consensus 8 ~~~S~~V~~G~~F~A~~G~~~DG~~fi~~A~~~---GA~aVv~e~~~~--~~~~~~~V~~i~~--------------~d~ 68 (494)
T TIGR01085 8 TLDSREVKPGDLFVAIKGTKVDGHDFIEEAIEN---GAVAVVVEREVD--YVAGRAGVPVIIV--------------PDL 68 (494)
T ss_pred CCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHC---CCEEEEECCCCC--CCCCCCCCEEEEE--------------CCH
T ss_conf 013001279967897125655848889999872---988999806011--2764346107996--------------231
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 999999729999997269989999803676667407899999998649849999504300040
Q gi|254781176|r 81 GRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEG 143 (502)
Q Consensus 81 g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg 143 (502)
.|.+.-.....+...=...--||=++|-=|.|=| +..|+++.+.+|-=|==+=|+=|.+=|
T Consensus 69 ~r~~~~~~A~~fY~~Ps~~l~viGvTGTNGKTtt--~~li~~~l~~~G~~tgliGT~g~~~~g 129 (494)
T TIGR01085 69 KRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTT--TSLIAQLLELLGKKTGLIGTIGYRLGG 129 (494)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHH--HHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_conf 3588899999973485525168999712874489--999999998679708998654530477
No 311
>PRK07660 consensus
Probab=46.66 E-value=6.3 Score=18.79 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=28.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 17999966814799999998589984499982557885518
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
||.|||-|-.|....-.+...|.+ .+..+.+.+.|.+.
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~---V~l~D~~~~~l~~~ 42 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAGYD---VKVQDLKQEQLDRG 42 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---EEEEECCHHHHHHH
T ss_conf 899989698999999999966981---89997988999999
No 312
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=46.29 E-value=19 Score=15.30 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH
Q ss_conf 999966814799999998589984499982557
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA 50 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~ 50 (502)
.|||+=|....-+-..+.. .+++||.+--..
T Consensus 19 ~vFGvpG~~~~~~~d~~~~--~~i~~v~~rhE~ 49 (579)
T TIGR03457 19 HAFGIMGSAFMDAMDLFPP--AGIRFIPVVHEQ 49 (579)
T ss_pred EEEECCCCCHHHHHHHHHH--CCCEEEEECCHH
T ss_conf 9998587247999987775--598098319789
No 313
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=46.28 E-value=19 Score=15.30 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 45438617999966814799999998589984499982557885518
Q gi|254781176|r 10 ITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 10 ~~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
.-.+-++-.|+-+|.+|||++-++...- ..|+.+-+|.-.-+|++.
T Consensus 58 am~~g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~l 103 (414)
T COG5379 58 AMQLGIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRL 103 (414)
T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHCCC-CEEEEEECCHHHHHHHHH
T ss_conf 8850778379994588613878761497-603788378899899899
No 314
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=46.11 E-value=19 Score=15.28 Aligned_cols=49 Identities=31% Similarity=0.417 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCC
Q ss_conf 9999972999999726998999980367666740789999999864--9849999504300
Q gi|254781176|r 82 RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFH 140 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~ 140 (502)
+.||.+..+.++. +|++ |=|||+-+...|-.+++.. +.+.+.+|++-+.
T Consensus 3 ~~aA~~A~~~v~~-----g~vi-----GLGtGsTv~~~i~~L~~~~~~~~~~i~~V~tS~~ 53 (213)
T cd01398 3 RAAARAAVDYVED-----GMVI-----GLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQ 53 (213)
T ss_pred HHHHHHHHHHCCC-----CCEE-----EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 9999999986689-----9999-----8685599999999999877615886799809699
No 315
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=45.90 E-value=19 Score=15.26 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=16.5
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHH
Q ss_conf 79999668147999999985899844999825578
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQ 51 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~ 51 (502)
|.|.|..|+|=-++...+...+.+-....+.+|.=
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~y 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89889998859999999999809998589978888
No 316
>PRK08813 threonine dehydratase; Provisional
Probab=45.85 E-value=8.7 Score=17.76 Aligned_cols=46 Identities=33% Similarity=0.494 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 69989999803676667407899999998649849999504300040678888999
Q gi|254781176|r 97 DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 97 ~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~ 152 (502)
+..|+||+..| |||-..|.+-. .|..++-++|+- | ||---+.++..
T Consensus 178 q~PD~vvvpvG-GGGL~sGia~a----~k~~~~~ViGve--p---e~a~~~~~Sl~ 223 (349)
T PRK08813 178 HAPDVVIVPIG-GGGLASGVALA----LKSQGVRVVGAQ--V---EGVDSMARAVR 223 (349)
T ss_pred CCCCEEEECCC-CCHHHHHHHHH----HHCCCCEEEEEC--C---CCHHHHHHHHC
T ss_conf 69998987788-60699999999----828997577743--1---47288999963
No 317
>pfam05194 UreE_C UreE urease accessory protein, C-terminal domain. UreE is a urease accessory protein. Urease pfam00449 hydrolyses urea into ammonia and carbamic acid. The C-terminal region of members of this family contains a His rich Nickel binding site.
Probab=45.84 E-value=19 Score=15.25 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf 78999999986498499995043000406
Q gi|254781176|r 116 AAPIIAKIARNKGVLTVGVVTKPFHFEGS 144 (502)
Q Consensus 116 ~~p~ia~~a~~~~~~~~~~v~~pf~~eg~ 144 (502)
.-+|++++.+.+| +++..++.||.-|+.
T Consensus 40 ~D~Vl~~ml~~lG-~~~~~~~~pF~Pe~g 67 (72)
T pfam05194 40 RDHVLEDMLRGLG-LTVTEVTAPFEPEGG 67 (72)
T ss_pred CCHHHHHHHHHCC-CEEEEEEECCCCCCC
T ss_conf 8879999999779-968995646688875
No 318
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=45.79 E-value=19 Score=15.25 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986333545027888741
Q gi|254781176|r 150 AESGIEALQETVDTLIVIPNQNLFRI 175 (502)
Q Consensus 150 a~~~~~~l~~~~d~~i~i~n~~l~~~ 175 (502)
|-.-|-++---.|++|+=..|-|-++
T Consensus 96 Av~HLfrVasGLDSmVvGE~QIlgQV 121 (429)
T PRK00045 96 AVRHLFRVASGLDSMVLGEPQILGQV 121 (429)
T ss_pred HHHHHHHHHHCCHHHCCCCHHHHHHH
T ss_conf 99999999733222105857899999
No 319
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.75 E-value=19 Score=15.25 Aligned_cols=97 Identities=21% Similarity=0.346 Sum_probs=57.3
Q ss_pred EEEEEEECCCHHHH---HHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 17999966814799---999998589984499982557885518997048515542556788888389999999729999
Q gi|254781176|r 16 RITVFGVGGGGGNA---VNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g~n~---~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
||.++|+|+.|.-+ ..++.+.|+.-. ++ -.++.+|... |
T Consensus 2 RI~~~GvG~S~~va~~~~~kl~r~G~~s~-~~-~~~~~~~~~~---------~--------------------------- 43 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAF-FL-HPTEALHGDL---------G--------------------------- 43 (128)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCEE-EC-CCHHHHHCCC---------C---------------------------
T ss_conf 49999426799999999999995799457-54-7315554113---------4---------------------------
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997269989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
.+.--|+++.+..=|- |--.--++++||++|+-++++...|= ..|.+.+|-.|.+|..
T Consensus 44 --~i~~~Dv~i~iS~SG~---T~e~~~~~~~ak~~g~~vI~iT~~~~---------------S~La~~ad~~l~~~~~ 101 (128)
T cd05014 44 --MVTPGDVVIAISNSGE---TDELLNLLPHLKRRGAPIIAITGNPN---------------STLAKLSDVVLDLPVE 101 (128)
T ss_pred --CCCCCCEEEEEECCCC---CHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHCCEEEECCCC
T ss_conf --7789999999979999---86799999999863785899987999---------------9679968989977998
No 320
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=45.71 E-value=8.5 Score=17.81 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHHHH--CCCCEEEEEE
Q ss_conf 83899999997299999972--6998999980
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEML--DKTHMCFVTA 106 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~--~~~~~~~~~a 106 (502)
+|++||+-.++++..+.+.- ++.|++|+++
T Consensus 88 RPDLGR~L~~~s~~~L~~~~~~~~~Dv~iVva 119 (260)
T PRK05465 88 RPDLGRRLSDESRAALKAQCVANGPDVQIVVA 119 (260)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 98767888989999999854789986899975
No 321
>cd01596 Aspartatase_like Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=45.45 E-value=19 Score=15.21 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=17.0
Q ss_pred EEEEECCCCCCCC----CHHHHHHHHHHHC
Q ss_conf 9998036766674----0789999999864
Q gi|254781176|r 102 CFVTAGMGGGTGT----GAAPIIAKIARNK 127 (502)
Q Consensus 102 ~~~~ag~gggtgt----g~~p~ia~~a~~~ 127 (502)
-|++-=+-||-|| -+--|||..|-+.
T Consensus 84 ~F~vdv~Q~GsGTstNMN~NEVIAn~A~e~ 113 (450)
T cd01596 84 QFPLDVWQTGSGTSTNMNVNEVIANRALEL 113 (450)
T ss_pred HCEEHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 041103207897645441899999999998
No 322
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=45.32 E-value=19 Score=15.20 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=55.5
Q ss_pred CEEEEEEECCCHHHHH-------HHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6179999668147999-------999985899844999825578855189970485155425567888883899999997
Q gi|254781176|r 15 PRITVFGVGGGGGNAV-------NNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~-------~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
-|+.++|-||.-||+. +|.. ..-.+..-|++.||.-+|....-+.- -++
T Consensus 42 ~Kvl~cGNGgSaadAqHfaaEl~gRf~-~eR~~lpaIaLt~dsS~lTai~NDy~-----------------------yd~ 97 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFE-KERPSLPAIALSTDSSVLTAIANDYG-----------------------YDE 97 (176)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCHHHHHHHCCCC-----------------------HHH
T ss_conf 979997698524518999999860787-52789873686426377765650455-----------------------889
Q ss_pred HHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 299999972-6998999980367666740789999999864984999950430004067888899999999986333545
Q gi|254781176|r 88 CIDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIV 166 (502)
Q Consensus 88 ~~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~ 166 (502)
-..+-.+++ +--|+++=..-.| .+.----..+-||++|+.||+.--.- -| +|+..+|-.|.
T Consensus 98 vFsRqveA~g~~GDvLigISTSG---NS~nVi~Ai~~Ak~~gm~vI~ltG~~---GG------------~~~~~~D~~i~ 159 (176)
T COG0279 98 VFSRQVEALGQPGDVLIGISTSG---NSKNVLKAIEAAKEKGMTVIALTGKD---GG------------KLAGLLDVEIR 159 (176)
T ss_pred HHHHHHHHCCCCCCEEEEEECCC---CCHHHHHHHHHHHHCCCEEEEEECCC---CC------------CCCCCCCEEEE
T ss_conf 99999995278887899981799---97789999999987698799995588---75------------00011315786
Q ss_pred HHHH
Q ss_conf 0278
Q gi|254781176|r 167 IPNQ 170 (502)
Q Consensus 167 i~n~ 170 (502)
||-.
T Consensus 160 VPs~ 163 (176)
T COG0279 160 VPST 163 (176)
T ss_pred CCCC
T ss_conf 5888
No 323
>PRK01726 consensus
Probab=45.27 E-value=19 Score=15.19 Aligned_cols=26 Identities=4% Similarity=0.050 Sum_probs=16.1
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6415865899876148620489999887
Q gi|254781176|r 220 VMRNMGRAMMGTGEASGHGRGIQAAEAA 247 (502)
Q Consensus 220 v~~~~g~a~~g~g~~~g~~r~~~a~~~a 247 (502)
-|+.+|.+++|+=... ..|.++.++.
T Consensus 249 rMSGSGST~FglF~sk--~eA~ki~~~~ 274 (312)
T PRK01726 249 RLTGTGACVFAEFDHE--ASAQAVFRQK 274 (312)
T ss_pred EEECCCCEEEEEECCH--HHHHHHHHHC
T ss_conf 3675380499997999--9999999868
No 324
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=45.24 E-value=19 Score=15.19 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=18.0
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 03676667407899999998649
Q gi|254781176|r 106 AGMGGGTGTGAAPIIAKIARNKG 128 (502)
Q Consensus 106 ag~gggtgtg~~p~ia~~a~~~~ 128 (502)
-|.+||||+|=+-+...+.+..+
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89968888759999999999879
No 325
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=45.17 E-value=19 Score=15.18 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.7
Q ss_pred EEEEEEECCCHHHHHHHHHHC
Q ss_conf 179999668147999999985
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSS 36 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~ 36 (502)
.+.++|--|||-.++=+++.-
T Consensus 30 i~gLIGPNGAGKSTLLk~I~G 50 (409)
T PRK09536 30 LVGVVGPNGAGKTTLLRAMNG 50 (409)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999987279999999966
No 326
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=45.16 E-value=19 Score=15.18 Aligned_cols=142 Identities=16% Similarity=0.246 Sum_probs=93.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCC-CCCEEEEEC---CCHHHHHHCCCCEEEEECC---CCCCCCCCCC--------CHHH
Q ss_conf 17999966814799999998589-984499982---5578855189970485155---4255678888--------8389
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGL-QGVNFVVAN---TDAQALMMSKAKQIIQLGS---GITEGLGAGS--------HPEV 80 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~n---td~~~l~~~~~~~~~~~g~---~~~~g~g~g~--------~~~~ 80 (502)
||.|+|.|+-||=.--++.+.|- ..|.||+=. ....+|+..-....-.-|. ..-.=.-+-. ++++
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 80 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKADL 80 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCCE
T ss_conf 96899517889999999873189951899988721688999985883897625677503304412204753357877548
Q ss_pred H---HH--HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCHH-HHHHHHH
Q ss_conf 9---99--99972999999726-99899998036766674078999999986-4984999950430004067-8888999
Q gi|254781176|r 81 G---RA--AAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARN-KGVLTVGVVTKPFHFEGSR-RMRVAES 152 (502)
Q Consensus 81 g---~~--~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~-~~~~~~~~v~~pf~~eg~~-r~~~a~~ 152 (502)
- -| -.++....++..+. ++-++|+-=||| ..-.++++-.+ +.-+..|+++..+.-+++- +...+-.
T Consensus 81 ~~~~~K~~~~~~~~~~~~~~~~~~~~vl~lqNG~g------~~e~l~~~~~~n~~~~l~G~~~~ga~~~~~g~~~~~~g~ 154 (332)
T TIGR00745 81 VIITVKAYQTEEALALLLPLIGPNTVVLLLQNGLG------HEEKLAELLPENRRRVLGGVTTHGAAREEPGLVVHHAGE 154 (332)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCH------HHHHHHHHCCCCCCCEEEEEEEEEEEEECCCEEEEEECC
T ss_conf 99970350048999999864188827999738802------799999850699770899999887677088408997236
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999986333
Q gi|254781176|r 153 GIEALQETVDT 163 (502)
Q Consensus 153 ~~~~l~~~~d~ 163 (502)
|.-.+..+.+.
T Consensus 155 G~~~~G~~~~~ 165 (332)
T TIGR00745 155 GATKIGDYVGE 165 (332)
T ss_pred CEEEECCCCCH
T ss_conf 33884577764
No 327
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.83 E-value=20 Score=15.15 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=28.9
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC
Q ss_conf 179999668147999999985899844999825578855189
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSK 57 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~ 57 (502)
||.|||-|-.|+...-.+...|+ +.+..+.+.+.|.+..
T Consensus 7 ~VaViGAG~MG~gIA~~~a~~G~---~V~l~D~~~~~l~~~~ 45 (310)
T PRK06130 7 NLAIIGAGAMGSGIAALFASKGL---DVVLIDPMPGALERAA 45 (310)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHH
T ss_conf 89897877999999999985899---8899979999999999
No 328
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=44.66 E-value=20 Score=15.13 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=21.4
Q ss_pred CCCCCCH-HHHHHHHHHHCCCEEEEEEECCCCCCC-HHHHHHHHHHH
Q ss_conf 6667407-899999998649849999504300040-67888899999
Q gi|254781176|r 110 GGTGTGA-APIIAKIARNKGVLTVGVVTKPFHFEG-SRRMRVAESGI 154 (502)
Q Consensus 110 ggtgtg~-~p~ia~~a~~~~~~~~~~v~~pf~~eg-~~r~~~a~~~~ 154 (502)
-|||+|+ +..+|+.....|-+ |+||= +.|.+.|.+-+
T Consensus 109 aGtGSGsLT~~Laravgp~G~v--------~t~E~~e~r~~~A~~n~ 147 (309)
T pfam08704 109 SGTGSGSLSHAIARTVAPTGHL--------YTFEFHEQRADKAREEF 147 (309)
T ss_pred ECCCCCHHHHHHHHHHCCCCEE--------EEEECCHHHHHHHHHHH
T ss_conf 3678429999999974888659--------99844789999999999
No 329
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=44.60 E-value=20 Score=15.12 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=25.7
Q ss_pred HHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 899999-9972999999726998999980367666740789999999864984999950
Q gi|254781176|r 79 EVGRAA-AEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVT 136 (502)
Q Consensus 79 ~~g~~~-a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~ 136 (502)
-+|... ++|-.+++.+.=-..|.|++.+| .|||-.|..-=.+ ......-++||..
T Consensus 169 ~lGy~~~~~El~~Q~~~~~~~~D~iv~~~G-sGgT~AGL~~G~~--~~~~~~~viGi~v 224 (337)
T PRK12390 169 GLGFVGFAEEVRAQEAELGFKFDYIVVCSV-TGSTQAGMVVGFA--ADGRADRVIGIDA 224 (337)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCHHHHHHHHHHH--HHCCCCEEEEEEE
T ss_conf 258998999999999972999895999538-8750899977788--6099961799861
No 330
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.56 E-value=20 Score=15.12 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=24.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 86179999668147999999985899844999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVV 45 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~ 45 (502)
..+-.-+..||.|.|+--.+-+.|.+ |.|+.
T Consensus 27 ~~~~~~~~~GG~aaN~Av~larlG~~-v~~ig 57 (196)
T cd00287 27 RPGDTEERAGGGAANVAVALARLGVS-VTLVG 57 (196)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCC-EEEEE
T ss_conf 61346886686799999999987998-77520
No 331
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=44.40 E-value=20 Score=15.10 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 6814799999998
Q gi|254781176|r 23 GGGGGNAVNNMVS 35 (502)
Q Consensus 23 gg~g~n~~~~~~~ 35 (502)
|-.|.|....|..
T Consensus 30 GDTGTNM~~T~~s 42 (530)
T TIGR03599 30 GDTGTNMLLTMTS 42 (530)
T ss_pred CCCHHHHHHHHHH
T ss_conf 9846759999999
No 332
>PRK05480 uridine kinase; Provisional
Probab=44.31 E-value=20 Score=15.09 Aligned_cols=29 Identities=28% Similarity=0.648 Sum_probs=12.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 36766674078999999986498499995
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
|..||.|+|=+-+--++++.++-..+.++
T Consensus 10 gIaG~SgSGKTT~a~~L~~~l~~~~v~vi 38 (209)
T PRK05480 10 GIAGGSGSGKTTVASTIYEELGDESIAVI 38 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99899977899999999998086875999
No 333
>PRK07402 precorrin-6B methylase; Provisional
Probab=44.27 E-value=20 Score=15.09 Aligned_cols=111 Identities=18% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCCEEEEEEEC-CCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH-------CCCCEE-EEECCCCCCCCCCCCCHHHHHH
Q ss_conf 38617999966-81479999999858998449998255788551-------899704-8515542556788888389999
Q gi|254781176|r 13 LKPRITVFGVG-GGGGNAVNNMVSSGLQGVNFVVANTDAQALMM-------SKAKQI-IQLGSGITEGLGAGSHPEVGRA 83 (502)
Q Consensus 13 ~~~~i~v~g~g-g~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~-------~~~~~~-~~~g~~~~~g~g~g~~~~~g~~ 83 (502)
++|.-.|.-|| |+|+=+|.--. .. .+-..+|+.-|..++.. ..+.+. +.-|.
T Consensus 38 l~~~~~vwDIGaGtGsVsiEaa~-~~-~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~----------------- 98 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAAL-LC-PKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGS----------------- 98 (196)
T ss_pred CCCCCEEEEECCCCCHHHHHHHH-HC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECC-----------------
T ss_conf 99999999947887799999998-78-998899997688899999998997299987999726-----------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH---HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99972999999726998999980367666740789999999---86498499995043000406788889999999998
Q gi|254781176|r 84 AAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIA---RNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159 (502)
Q Consensus 84 ~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a---~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~ 159 (502)
|-+ .+..+....|.||| |||. +-.-++-.+. +..|.+++..||+= ....|.+.++++.-
T Consensus 99 -ape---~L~~l~p~pD~vFI----GGg~--~l~~il~~~~~~L~pgGriVinaitLe-------tl~~~~~~l~~~~~ 160 (196)
T PRK07402 99 -APE---CLAQLAPAPDRICI----EGGR--PIKEILQAVWQYLKPGGRLVATASSLE-------GLYAISEGLAQLQA 160 (196)
T ss_pred -CHH---HHHHCCCCCCEEEE----CCCC--CHHHHHHHHHHHCCCCCEEEEEEEEHH-------HHHHHHHHHHHCCC
T ss_conf -366---68408999999998----4896--889999999986799989999857098-------89999999997388
No 334
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=44.21 E-value=20 Score=15.08 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=29.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC-HHHHHH
Q ss_conf 1799996681479999999858998449998255-788551
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD-AQALMM 55 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd-~~~l~~ 55 (502)
||.|+|.|.-|+=.--+|.+.|.+ |.|++-.-. ..++..
T Consensus 2 kI~IiGaGaiG~~~a~~L~~ag~~-V~li~r~~~~~~~i~~ 41 (307)
T PRK06522 2 KIAILGAGAIGGLFGARLAQAGHD-VTLVARGATLAEALNE 41 (307)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH
T ss_conf 899999149999999999848998-8999788889999996
No 335
>pfam11144 DUF2920 Protein of unknown function (DUF2920). This bacterial family of proteins has no known function.
Probab=43.83 E-value=20 Score=15.04 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCEEEEEECCCCCCCCCHHHHH-HHHHHHCCCEEEEEEECCC
Q ss_conf 9899998036766674078999-9999864984999950430
Q gi|254781176|r 99 THMCFVTAGMGGGTGTGAAPII-AKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 99 ~~~~~~~ag~gggtgtg~~p~i-a~~a~~~~~~~~~~v~~pf 139 (502)
.-+|||+.|+||-.++----.+ -.+||+.++.+|.|---=|
T Consensus 35 kaiVfiI~G~G~d~n~~~~~~~~~~iA~~f~va~i~V~YHci 76 (403)
T pfam11144 35 KAIVFIIPGFGADANISYLDFFREYVAKNFDVAAVSVNYHCI 76 (403)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECEEEE
T ss_conf 489999677676755589999999999875979998362112
No 336
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=43.47 E-value=20 Score=15.00 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEE------ECCCHH------HHHHC---CCC-EEEEECCCCCCCCCCCCCH
Q ss_conf 6179999668147999999985899844999------825578------85518---997-0485155425567888883
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVV------ANTDAQ------ALMMS---KAK-QIIQLGSGITEGLGAGSHP 78 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~------~ntd~~------~l~~~---~~~-~~~~~g~~~~~g~g~g~~~ 78 (502)
--+.|||=|+||+.+--...+.|.. |-.+. .||-.. +|... .-+ ...++ ....||-.-++|+
T Consensus 6 tDVLVIG~G~AGL~AAl~a~e~G~~-V~vl~K~~~~~snS~~AqGGi~aalg~~~~~~~Ds~e~h~-~DTlkgg~~~~d~ 83 (657)
T PRK08626 6 TDSLVIGAGLAGLRVAIAAKERGLD-TIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHF-ADTVKGSDWGCDQ 83 (657)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHCCCCCH
T ss_conf 1689999659999999999975995-7999688899986477533776630346789997989999-9999861688889
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999972999999726
Q gi|254781176|r 79 EVGRAAAEECIDEITEMLD 97 (502)
Q Consensus 79 ~~g~~~a~~~~~~i~~~~~ 97 (502)
++.+.-++++-+.|+++..
T Consensus 84 ~~v~~l~~~ap~~i~~L~~ 102 (657)
T PRK08626 84 EVARMFAHTAPKAVRELAN 102 (657)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999989999999997
No 337
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=43.45 E-value=20 Score=15.00 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=20.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 676667407899999998649849999504300040
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEG 143 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg 143 (502)
+|||||. +.+.+-.|+...=..+||| +|.-=|
T Consensus 4 igGGTGl---~~ll~gLk~~~~~itaIVt-v~DdGG 35 (309)
T cd07044 4 FGGGTGL---PVLLRGLKEFPVEITAIVT-VADDGG 35 (309)
T ss_pred ECCCCCH---HHHHHHHHHCCCCEEEEEE-CCCCCC
T ss_conf 8365348---8999998746787169998-366996
No 338
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.43 E-value=20 Score=15.00 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=34.1
Q ss_pred HHHHHHHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999726--998999980367666740789999999864984999950430004067888899999999986333545
Q gi|254781176|r 89 IDEITEMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIV 166 (502)
Q Consensus 89 ~~~i~~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~ 166 (502)
.+++.+... .+.++||.+.-+- .........++-+.+|+-.+-++... .|..--...+.+.-..+|.+.+
T Consensus 18 ~~~~i~~ag~~~~ri~viptAs~~--~~~~~~~~~~~f~~lG~~~v~~l~~~------~r~~a~~~~~~~~l~~a~~i~~ 89 (217)
T cd03145 18 LQRFVARAGGAGARIVVIPAASEE--PAEVGEEYRDVFERLGAREVEVLVID------SREAANDPEVVARLRDADGIFF 89 (217)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCC--HHHHHHHHHHHHHHCCCCCEEEEECC------CHHHCCCHHHHHHHHCCCEEEE
T ss_conf 999999709998759998588788--59999999999998399950598226------8354489899999964998999
Q ss_pred H
Q ss_conf 0
Q gi|254781176|r 167 I 167 (502)
Q Consensus 167 i 167 (502)
-
T Consensus 90 ~ 90 (217)
T cd03145 90 T 90 (217)
T ss_pred C
T ss_conf 3
No 339
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=43.42 E-value=20 Score=15.00 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=15.6
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHH
Q ss_conf 99996681479999999858998449998255788
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQA 52 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~ 52 (502)
.|||+=|....-+-..+.. .+++||.+--..-+
T Consensus 23 ~vFG~pG~~~~~~~d~~~~--~~i~~I~~rhE~~A 55 (589)
T PRK07525 23 HAFGIIGSAFMDASDLFPP--AGIRFIDVAHEQNA 55 (589)
T ss_pred EEEECCCHHHHHHHHHHHH--CCCEEEEECCHHHH
T ss_conf 9997886407999997775--59819820978999
No 340
>PRK07524 hypothetical protein; Provisional
Probab=43.24 E-value=21 Score=14.98 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=14.2
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 999966814799999998589984499982
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVVAN 47 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n 47 (502)
.||||-|....-+-.-+.. .++++|.+-
T Consensus 19 ~iFgvpG~~~~~l~~al~~--~~i~~v~~~ 46 (534)
T PRK07524 19 TVFGIPGVHTVELYRGLPG--SGIRHVTPR 46 (534)
T ss_pred EEEECCCHHHHHHHHHHHH--CCCEEEEEC
T ss_conf 9998076508999998875--798597249
No 341
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=43.02 E-value=21 Score=14.96 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE--E-EEECCCCCCCCCHHHHHHHHHHHCC---CEEEEEEECCCCC---
Q ss_conf 67888883899999997299999972699899--9-9803676667407899999998649---8499995043000---
Q gi|254781176|r 71 GLGAGSHPEVGRAAAEECIDEITEMLDKTHMC--F-VTAGMGGGTGTGAAPIIAKIARNKG---VLTVGVVTKPFHF--- 141 (502)
Q Consensus 71 g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~--~-~~ag~gggtgtg~~p~ia~~a~~~~---~~~~~~v~~pf~~--- 141 (502)
..|.|.+---+..-.++-.|.|+..++.+|-+ | +.....||+|.-++-.+-.+.-|.| +++-++--.|+.+
T Consensus 120 ~~~~G~~~~~~~~~~e~~~drlR~~~EeCD~lqGfQ~~~d~~~gfgG~~s~~lE~l~DEy~~~~~~~~~~~p~~~~~~~~ 199 (493)
T cd06060 120 VFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASS 199 (493)
T ss_pred CCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH
T ss_conf 43036887503015788999999988736675425999836886157899999987876388668986258876454331
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf -4067888899999999986333545027-88874136653189------997446799999988888765166555---
Q gi|254781176|r 142 -EGSRRMRVAESGIEALQETVDTLIVIPN-QNLFRIANDKTTFA------DAFSMADQVLYSGVSCITDLMIKEGLI--- 210 (502)
Q Consensus 142 -eg~~r~~~a~~~~~~l~~~~d~~i~i~n-~~l~~~~~~~~~~~------~af~~~d~~l~~~v~~i~~~i~~~g~i--- 210 (502)
+-..|.-+..-++..|.++++-++-+.- +.+....++..++. +.--..-.+|+.++.+|+ .|.-.
T Consensus 200 ~~~~~~~lN~als~~~lse~ssl~~Plsl~~~~~~~~~~~~~~p~l~~~~~~~yhtSAllA~aldt~T----lp~Rl~~s 275 (493)
T cd06060 200 DKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLT----LPYRLKSS 275 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCE----EEEEECCC
T ss_conf 46689999989879877615717742475111024789876677655465551468899999874140----00130588
Q ss_pred CCCHHHHHHHHCCCCE
Q ss_conf 5898787876415865
Q gi|254781176|r 211 NLDFADVRSVMRNMGR 226 (502)
Q Consensus 211 n~df~d~~~v~~~~g~ 226 (502)
..+..++...|...|+
T Consensus 276 ~~~m~~L~~~L~~~gR 291 (493)
T cd06060 276 PSSLSGLCDDLSFSGR 291 (493)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 5369999998607654
No 342
>KOG1436 consensus
Probab=42.95 E-value=12 Score=16.85 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC-EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEC
Q ss_conf 89999887527010002245553-78999616888899999999999997416886399985313465754799998513
Q gi|254781176|r 240 GIQAAEAAVANPLLDEASMKGSQ-GLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATG 318 (502)
Q Consensus 240 ~~~a~~~a~~~pll~~~~~~~a~-~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg 318 (502)
....+.+|...-=+ +-+ -+|+.| .+|++..|+.+++..+ .+++-|--|+-+++++-. ....++-.+++
T Consensus 236 ll~~v~~a~~~~~~------~~~~pvl~ki--apDL~~~el~dia~v~-kk~~idg~IvsnttVsrp--~~~~~~~~~~e 304 (398)
T KOG1436 236 LLTKVVQARDKLPL------GKKPPVLVKI--APDLSEKELKDIALVV-KKLNIDGLIVSNTTVSRP--KASLVNKLKEE 304 (398)
T ss_pred HHHHHHHHHHCCCC------CCCCCEEEEE--CCCHHHHHHHHHHHHH-HHHCCCCEEECCCEEECC--CCCCCCCCCCC
T ss_conf 99999998860456------8898658885--6524277898999999-983756366138566247--10101666435
Q ss_pred CC
Q ss_conf 55
Q gi|254781176|r 319 IE 320 (502)
Q Consensus 319 ~d 320 (502)
+.
T Consensus 305 tG 306 (398)
T KOG1436 305 TG 306 (398)
T ss_pred CC
T ss_conf 68
No 343
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=42.55 E-value=21 Score=14.90 Aligned_cols=96 Identities=21% Similarity=0.375 Sum_probs=68.4
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH--C-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1799996681479999999858998449998255788551--8-997048515542556788888389999999729999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMM--S-KAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~--~-~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
++.|+|.|--|......|.+.|- +-+++++|...... + ........|. +.++ +.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~---~Vv~Id~d~~~~~~~~~~~~~~~~v~gd--------~t~~-----------~~L 59 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH---NVVLIDRDEERVEEFLADELDTHVVIGD--------ATDE-----------DVL 59 (225)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHCCCEEEEEEC--------CCCH-----------HHH
T ss_conf 89998985788999999987899---0899976889999863200044999926--------8898-----------999
Q ss_pred HHH-HCCCCEEEEEECCCCCCCC-CHHHHHHHHHHH-CCCEEE-EEEECCC
Q ss_conf 997-2699899998036766674-078999999986-498499-9950430
Q gi|254781176|r 93 TEM-LDKTHMCFVTAGMGGGTGT-GAAPIIAKIARN-KGVLTV-GVVTKPF 139 (502)
Q Consensus 93 ~~~-~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~-~~~~~~-~~v~~pf 139 (502)
+++ ++++|+++.+ ||. -..-+++.+|++ +|+-++ +-+.-|-
T Consensus 60 ~~agi~~aD~vva~------t~~d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 60 EEAGIDDADAVVAA------TGNDEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred HHCCCCCCCEEEEE------ECCCHHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 86798638999998------0886799999999998739984999956941
No 344
>LOAD_sis consensus
Probab=42.50 E-value=21 Score=14.90 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9899998036766674078999999986498499995043
Q gi|254781176|r 99 THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 99 ~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
.++++++..=|+ |......++.||+.|+.+++++..|
T Consensus 51 ~~~~i~iS~SG~---t~e~~~a~~~~~~~~~~~i~it~~~ 87 (90)
T LOAD_sis 51 DDLLVIISKSGG---TTETLLAALLAKKRGAKTIAITNVA 87 (90)
T ss_pred CCEEEEECCCCC---CHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 888999878988---8999999999998899399996888
No 345
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=42.44 E-value=21 Score=14.89 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 86179999668147999999985899844999825
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT 48 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt 48 (502)
..++.|||=|=|||-|--..-+.|++ |.++-+.+
T Consensus 3 ~~~ViVIGgGhAG~EAA~a~Ar~G~~-v~L~emrp 36 (434)
T PRK05335 3 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP 36 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEEECC
T ss_conf 88569989868999999999968996-79999335
No 346
>pfam04794 YdjC YdjC-like protein. Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate.
Probab=42.23 E-value=21 Score=14.87 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=88.4
Q ss_pred EEECCCHHHHHHHHHHCCCCCCEEEEECCCH--HHHHHCCCCEEEEECC--CCCCCCCCC----------------CCHH
Q ss_conf 9966814799999998589984499982557--8855189970485155--425567888----------------8838
Q gi|254781176|r 20 FGVGGGGGNAVNNMVSSGLQGVNFVVANTDA--QALMMSKAKQIIQLGS--GITEGLGAG----------------SHPE 79 (502)
Q Consensus 20 ~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~--~~l~~~~~~~~~~~g~--~~~~g~g~g----------------~~~~ 79 (502)
+|..-+=+.+|-..++.|+-..--+-+|... .++...+-...+-+|- .+|.|.-.. ..+.
T Consensus 10 ~G~s~~vn~gI~~~~~~G~ltstS~M~n~p~~~~a~~~~k~~p~l~vGlHlnLt~g~p~~~~~~~psLvd~~G~F~~~~~ 89 (261)
T pfam04794 10 FGLSPGVNRGIIEAHRAGIVTSTSLMVNMPAFEHAAALAKRNPDLGVGLHLTLTAGKPLLPPTEVPSLVDENGYFLRLSV 89 (261)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCHH
T ss_conf 88987788999999987981678871078159999999972899987888773689888984548976188996175299
Q ss_pred HHHHH----------HHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 99999----------9972999999726-998999980367666740789999999864984999950430004067888
Q gi|254781176|r 80 VGRAA----------AEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMR 148 (502)
Q Consensus 80 ~g~~~----------a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~ 148 (502)
..+++ ..|-.-+|....+ |-..-||-.=++--.--+..+++.++|++.|+-.+-+...|..+-...+ .
T Consensus 90 ~~~~~~~~~~~~~ev~~Ei~AQi~~f~~~G~~p~hiDgH~hvh~~P~i~~~~~~la~~~~lp~iR~~~~~~~~~~~~~-~ 168 (261)
T pfam04794 90 LLRRALLRRLDRDEVERELRAQIERFLAFGLPPDHIDSHHHVHLLPQVRPAVLELAREYGLPLVRLPREPPAGAPKLA-L 168 (261)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCH-H
T ss_conf 999987149999999999999999999839996466165520028789999999999949987724665332222101-3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999999863335450278887413665318999744679999998888876516655558
Q gi|254781176|r 149 VAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINL 212 (502)
Q Consensus 149 ~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~ 212 (502)
.-......+.+.....=+-.|+.+..++.....+.+.| -.+|.+.=.|.+++|..||++.-
T Consensus 169 ~~~~~~~~~~~~~~~~gi~~~~~f~g~~~~~~~~~~~~---~~~l~~l~~g~~eim~HPg~~d~ 229 (261)
T pfam04794 169 LVRSLAAAFRARFYRAGISTNDGFAGLYSSGADFEALL---LALLARLPEGTTEIMCHPGYVDD 229 (261)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCCCEEEEECCCCCCH
T ss_conf 56767899999999869986854355456630079999---99998489996899978999985
No 347
>PRK10867 signal recognition particle protein; Provisional
Probab=42.21 E-value=21 Score=14.87 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCCCCHHHCCCE-EEEEEECCCHHHH----HHHHH-HCCCCCCEEEEECCCHH
Q ss_conf 557884543861-7999966814799----99999-85899844999825578
Q gi|254781176|r 5 NANMDITELKPR-ITVFGVGGGGGNA----VNNMV-SSGLQGVNFVVANTDAQ 51 (502)
Q Consensus 5 ~~~~~~~~~~~~-i~v~g~gg~g~n~----~~~~~-~~~~~~~~~~~~ntd~~ 51 (502)
...+++..-+|. |.++|+=|+|--+ +-+++ ..+-..|=++|++|-..
T Consensus 90 ~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~Rp 142 (453)
T PRK10867 90 NQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (453)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 76663378999699997468885185899999999973898379855887705
No 348
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=42.15 E-value=14 Score=16.26 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=18.5
Q ss_pred HHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 7876415865899876148620489999887527
Q gi|254781176|r 217 VRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVAN 250 (502)
Q Consensus 217 ~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~ 250 (502)
+.+.|+.+|.++||.-... +.|..+++ +|.+
T Consensus 246 ~~a~mSGSGsTvFalf~~~--~~A~~~a~-~l~~ 276 (299)
T PRK03188 246 LAGIVSGSGPTCAFLCASA--DSAVDVAA-ALSG 276 (299)
T ss_pred CEEEEECCCCCEEEEECCH--HHHHHHHH-HHHH
T ss_conf 8789978440102797899--99999999-9975
No 349
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=42.03 E-value=21 Score=14.85 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=7.8
Q ss_pred HHHHHCCCCEEEEEECCC
Q ss_conf 999726998999980367
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMG 109 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~g 109 (502)
|+++++.+|+|+.+.|.|
T Consensus 51 l~~~~~~~DlIittGG~g 68 (135)
T smart00852 51 LREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHCCCEEEECCCCC
T ss_conf 999841489999828878
No 350
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=41.94 E-value=22 Score=14.84 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8883899999997299999972699899998036766674078999999986498499995
Q gi|254781176|r 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 75 g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
+++|+.+..+|.+-.++ -.+.+|+ |+.+|+.+..++.++.+.+++.++..
T Consensus 53 ~~~p~~a~~~a~~Li~~-------d~V~~vi----G~~~S~~~~a~~~~~~~~~ip~i~~~ 102 (345)
T cd06338 53 QSNPARAARAYERLITQ-------DKVDFLL----GPYSSGLTLAAAPVAEKYGVPMVAGS 102 (345)
T ss_pred CCCHHHHHHHHHHHHHC-------CCCEEEE----CCCCHHHHHCCCHHHHHCCCEEECCC
T ss_conf 99989999999999961-------8953997----68661432001037887196662566
No 351
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=41.92 E-value=22 Score=14.84 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 679999998888876516655558987878764158658
Q gi|254781176|r 189 ADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRA 227 (502)
Q Consensus 189 ~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a 227 (502)
-|+.-.+++-..+-+|.---+.+-++.|+|-|....|.|
T Consensus 172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA 210 (432)
T COG0281 172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA 210 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH
T ss_conf 545327999999999999998499722038999677588
No 352
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=41.78 E-value=19 Score=15.21 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH---HHHCCCCC-C
Q ss_conf 3189997446799999988888765166555589878787641586589987614862048999988---75270100-0
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEA---AVANPLLD-E 255 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~---a~~~pll~-~ 255 (502)
+||-.-|..-=+-|.+...-+.+..- --.++.-+|.| +|+|-...++-...+++. ...-|+-. .
T Consensus 191 iTlGq~f~a~a~~l~r~~~RL~~a~~-----------~l~~~~lGGtA-vGTG~n~~~~f~~~~~~~L~~~tgl~~~~a~ 258 (455)
T cd01362 191 LTLGQEFSGYAAQLEHAIARIEAALP-----------RLYELALGGTA-VGTGLNAHPGFAEKVAAELAELTGLPFVTAP 258 (455)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEECC
T ss_conf 00899999999989999999999999-----------99986057744-3478788812679999999886299971168
Q ss_pred CCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCC
Q ss_conf 224--55537899961688889999999999999741-6886
Q gi|254781176|r 256 ASM--KGSQGLLISITGGSDLTLFEVDEAATRIREEV-DSEA 294 (502)
Q Consensus 256 ~~~--~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~-~~~a 294 (502)
+.+ ...+..++.+.+.-..--..+..+++-||-.. +|.+
T Consensus 259 n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~ 300 (455)
T cd01362 259 NKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRC 300 (455)
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 789998487099999999999999999999999998277656
No 353
>PRK07429 phosphoribulokinase; Provisional
Probab=41.14 E-value=22 Score=14.75 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=29.0
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 980367666740789999999864984999950430
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
++-|..||+|+|-+-+.-++++..|.-.|+++..=-
T Consensus 9 ~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~Dd 44 (331)
T PRK07429 9 VIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDD 44 (331)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 899985788778999999999983888779994786
No 354
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=40.98 E-value=22 Score=14.74 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999986333545027888741
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPNQNLFRI 175 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n~~l~~~ 175 (502)
.-|-.-|-+.---.|++|+=..|-|-++
T Consensus 93 ~~Av~HLfrVasGLDSmVvGE~QIlGQV 120 (414)
T PRK13940 93 TEVIMHLMKLACGLESMVLGEPQILGQV 120 (414)
T ss_pred HHHHHHHHHHHCCCHHHHCCCHHHHHHH
T ss_conf 8999999998613411424838899999
No 355
>PRK06835 DNA replication protein DnaC; Validated
Probab=40.96 E-value=22 Score=14.74 Aligned_cols=107 Identities=24% Similarity=0.328 Sum_probs=51.7
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHH-HH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 99899998036766674078999999986---49849999504300040678888-99---9999999863335450278
Q gi|254781176|r 98 KTHMCFVTAGMGGGTGTGAAPIIAKIARN---KGVLTVGVVTKPFHFEGSRRMRV-AE---SGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 98 ~~~~~~~~ag~gggtgtg~~p~ia~~a~~---~~~~~~~~v~~pf~~eg~~r~~~-a~---~~~~~l~~~~d~~i~i~n~ 170 (502)
...++|. |.||||=+..-.-||++ .| .+|-++|.|--|+--+..+. .. .-+...-..||-||+ |
T Consensus 183 ~~nLlf~-----G~~G~GKTfLa~~IA~ell~~g-~sViy~ta~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLII---D 253 (330)
T PRK06835 183 NENLLFY-----GNTGTGKTFLSNCIAKELLDRG-KTVIYRTSDELIENLREIRFNNDNDAPELEDLLINCDLLII---D 253 (330)
T ss_pred CCCEEEE-----CCCCCCHHHHHHHHHHHHHHCC-CEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEE---E
T ss_conf 8866988-----9999988999999999999879-94999629999999999754576448999999961898997---2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHC
Q ss_conf 887413665318999744679999998888876516655--5589878787641
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGL--INLDFADVRSVMR 222 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~--in~df~d~~~v~~ 222 (502)
-|--.....-+..+-|.+-|.=+... +|-+ -|+++.+++....
T Consensus 254 DLG~E~~t~~~~~~Lf~iIN~R~~~~---------k~tIITTNl~~~eL~~~y~ 298 (330)
T PRK06835 254 DLGTESITEFSKTELFNLINKRLLMN---------KKMIISTNLSLEELLKTYS 298 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC---------CCEEEECCCCHHHHHHHHH
T ss_conf 10345588689999999999998679---------9979988999899999874
No 356
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=40.95 E-value=20 Score=15.04 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=13.3
Q ss_pred HHCCCCEEEEEEEECCCC
Q ss_conf 641586589987614862
Q gi|254781176|r 220 VMRNMGRAMMGTGEASGH 237 (502)
Q Consensus 220 v~~~~g~a~~g~g~~~g~ 237 (502)
-|+.+|.+++|.=.-.-+
T Consensus 228 rMSGSGstvFa~F~~~~e 245 (288)
T PRK00650 228 GLTGSGATLFVRYPRILE 245 (288)
T ss_pred EEECCCCEEEEEECCCCC
T ss_conf 887313049999088110
No 357
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=40.86 E-value=22 Score=14.73 Aligned_cols=93 Identities=19% Similarity=0.421 Sum_probs=54.6
Q ss_pred EEEEEEECCC--HHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1799996681--47999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 16 RITVFGVGGG--GGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 16 ~i~v~g~gg~--g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
.|.|.|.||. |+..+..+..... ++.++... |. .|-..--++-+.|..... |+ .+|-....+
T Consensus 1 ~Ivv~GmGGS~i~gd~l~~~~~~~~-~vPv~v~r-dy-~lP~~v~~~~lvi~~S~S------Gn-------TeEtl~~~~ 64 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEA-KIPVYVVK-DY-TLPAFVDRKTLVIAVSYS------GN-------TEETLSAVE 64 (119)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCC-CCCEEEEC-CC-CCCCCCCCCCEEEEECCC------CC-------CHHHHHHHH
T ss_conf 9899956388899999999970579-98879848-99-898755878789999289------79-------689999999
Q ss_pred HHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 972-69989999803676667407899999998649849999
Q gi|254781176|r 94 EML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 94 ~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
++. .++.++.||.| | -++++|++.++-.+-+
T Consensus 65 ~a~~~ga~vi~itsG--G--------~L~~~a~~~~~p~v~i 96 (119)
T cd05017 65 QAKERGAKIVAITSG--G--------KLLEMAREHGVPVIII 96 (119)
T ss_pred HHHHCCCEEEEECCC--C--------HHHHHHHHCCCCEEEC
T ss_conf 999859909998499--5--------5999998879998987
No 358
>PRK11823 DNA repair protein RadA; Provisional
Probab=40.84 E-value=22 Score=14.72 Aligned_cols=196 Identities=21% Similarity=0.354 Sum_probs=102.9
Q ss_pred HHHHHHHHC--CCCEEEE-------EECCCCCCCC-----CHHHHHHHHHHHCCCE--EEEEEECCCCCCCHHHHHHHHH
Q ss_conf 999999726--9989999-------8036766674-----0789999999864984--9999504300040678888999
Q gi|254781176|r 89 IDEITEMLD--KTHMCFV-------TAGMGGGTGT-----GAAPIIAKIARNKGVL--TVGVVTKPFHFEGSRRMRVAES 152 (502)
Q Consensus 89 ~~~i~~~~~--~~~~~~~-------~ag~gggtgt-----g~~p~ia~~a~~~~~~--~~~~v~~pf~~eg~~r~~~a~~ 152 (502)
.+.|...++ ..++++| ...+.+--|| ..|-.+-++||+.++. -||-||+-=.. .
T Consensus 154 l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~i----------A 223 (454)
T PRK11823 154 LEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAI----------A 223 (454)
T ss_pred HHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC----------C
T ss_conf 999999998609988999431115415667789978999999999999997449828999977267764----------6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH------HCCCCE
Q ss_conf 99999986333545027888741366531899974467999999888887651665555898787876------415865
Q gi|254781176|r 153 GIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSV------MRNMGR 226 (502)
Q Consensus 153 ~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v------~~~~g~ 226 (502)
|-.-|+..||+++-+.-|+-..+ .---..+.-|.-.|++ |+-+ |+..|+.-++ |-..+ ....|.
T Consensus 224 GPkvLEHmVDtVl~fEGd~~~~~-RiLR~~KNRFG~t~Ei------GvFe-M~~~GL~~v~--nPS~~Fls~~~~~~~Gs 293 (454)
T PRK11823 224 GPRVLEHMVDTVLYFEGDRHSRF-RILRAVKNRFGATNEI------GVFE-MTEKGLREVS--NPSELFLSERDENVPGS 293 (454)
T ss_pred CCHHHHHHHCEEEEECCCCCCCC-EEEEEECCCCCCCCEE------EEEE-ECCCCCEECC--CHHHHHHHCCCCCCCCE
T ss_conf 61452220104687515766550-2456312467766605------8998-6168845668--87799862688787750
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCC-----------------------CC---CCCCCCCCEEEEEEECCCCCCHHHHH
Q ss_conf 89987614862048999988752701-----------------------00---02245553789996168888999999
Q gi|254781176|r 227 AMMGTGEASGHGRGIQAAEAAVANPL-----------------------LD---EASMKGSQGLLISITGGSDLTLFEVD 280 (502)
Q Consensus 227 a~~g~g~~~g~~r~~~a~~~a~~~pl-----------------------l~---~~~~~~a~~~l~~i~~~~~~~l~e~~ 280 (502)
|+.-+=+++ |+.-.=-+||-+|- |+ ... -+.+.|.+|++||-.++=.-+|
T Consensus 294 ~i~~~~EGs---RpllvEvQALv~~~~~~~PrR~~~G~d~~Rl~mllAVlek~~~~~-l~~~DVyvnv~GG~ki~epa~D 369 (454)
T PRK11823 294 AVTVTMEGT---RPLLVEIQALVSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLP-LSDQDVYVNVVGGLKITEPAAD 369 (454)
T ss_pred EEEEEEEEC---CCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCCHHH
T ss_conf 799888506---424010344615677888715780587899999999999984986-2266479991478415785477
Q ss_pred H--HHHHHHHHCC---CCCCEEEEEEECCCCCCEEE
Q ss_conf 9--9999997416---88639998531346575479
Q gi|254781176|r 281 E--AATRIREEVD---SEANIILGATFDEALEGVIR 311 (502)
Q Consensus 281 ~--~~~~i~~~~~---~~a~ii~G~~~d~~~~~~~~ 311 (502)
- ++..+....+ +.--+++|=. .|.|.||
T Consensus 370 LAva~Ai~SS~~~~~i~~~~~~~GEV---GL~GEiR 402 (454)
T PRK11823 370 LAVALAIASSLRDRPLPPDTVVFGEV---GLSGEIR 402 (454)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEC---CCCCEEE
T ss_conf 99999999870497789882899941---3670342
No 359
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=40.69 E-value=22 Score=14.71 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEEEECCC--HHHHHHHHHHCCC-CCCE-EEEECCCHHHHHH
Q ss_conf 1799996681--4799999998589-9844-9998255788551
Q gi|254781176|r 16 RITVFGVGGG--GGNAVNNMVSSGL-QGVN-FVVANTDAQALMM 55 (502)
Q Consensus 16 ~i~v~g~gg~--g~n~~~~~~~~~~-~~~~-~~~~ntd~~~l~~ 55 (502)
.|-++|+||. |.-++-..+.... .... ++.-|+|...+..
T Consensus 22 ~iv~iGiGGS~LG~k~l~~al~~~~~~~~~i~f~dn~Dp~~~~~ 65 (158)
T cd05015 22 DVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAE 65 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf 69998143338999999999762454895699957999899999
No 360
>KOG3960 consensus
Probab=40.44 E-value=23 Score=14.68 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCEEEEE-----EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 899999998649849999-----504300040678888999999999863335450278887413665318999744679
Q gi|254781176|r 117 APIIAKIARNKGVLTVGV-----VTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQ 191 (502)
Q Consensus 117 ~p~ia~~a~~~~~~~~~~-----v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~ 191 (502)
.+..++.+|-++--++.| .||- | +||.++-.++.+.|++.. ..-|||||=++ +
T Consensus 99 g~cl~wAckackrks~svDRRKAATMR---E-RRRLkKVNEAFE~LKRrT---~~NPNQRLPKV---------------E 156 (284)
T KOG3960 99 GQCLLWACKACKRKSTSVDRRKAATMR---E-RRRLKKVNEAFETLKRRT---SSNPNQRLPKV---------------E 156 (284)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHC---CCCCCCCCCHH---------------H
T ss_conf 631777653315654452477777789---9-988999999999998623---79943455089---------------9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999998888876
Q gi|254781176|r 192 VLYSGVSCITDL 203 (502)
Q Consensus 192 ~l~~~v~~i~~~ 203 (502)
||..+|+-|-.|
T Consensus 157 ILRsAI~YIE~L 168 (284)
T KOG3960 157 ILRSAIRYIERL 168 (284)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 361
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=40.24 E-value=23 Score=14.66 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 98036766674078999999986498499995043
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
.+.|.| |....-.++||.||+-+++|-+-+
T Consensus 171 ~I~G~G-----GlGh~avQ~Aka~ga~Via~~~~~ 200 (339)
T COG1064 171 AVVGAG-----GLGHMAVQYAKAMGAEVIAITRSE 200 (339)
T ss_pred EEECCC-----HHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 998774-----899999999998699699995787
No 362
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=40.22 E-value=18 Score=15.36 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=6.6
Q ss_pred EEEECCCCCCCCC
Q ss_conf 9851355320000
Q gi|254781176|r 314 VVATGIENRLHRD 326 (502)
Q Consensus 314 ~iatg~d~~~~~~ 326 (502)
-||-|+-+..|+.
T Consensus 256 YIA~GISGAiQH~ 268 (313)
T PRK03363 256 YLAVGISGQIQHM 268 (313)
T ss_pred EEEECCCHHHHHH
T ss_conf 9997655078888
No 363
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=40.16 E-value=23 Score=14.65 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCEEEEEEEC-CCHHHHHHHHHHCCCCCCEEEEECCCHHHHHH-------CCCCEEEEE--CCCCCCCCCCCCCHHHHHH
Q ss_conf 8617999966-81479999999858998449998255788551-------899704851--5542556788888389999
Q gi|254781176|r 14 KPRITVFGVG-GGGGNAVNNMVSSGLQGVNFVVANTDAQALMM-------SKAKQIIQL--GSGITEGLGAGSHPEVGRA 83 (502)
Q Consensus 14 ~~~i~v~g~g-g~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~-------~~~~~~~~~--g~~~~~g~g~g~~~~~g~~ 83 (502)
+|.=.|.-|| |+|.=+|.-.....- +-..+|+.-|..++.. ..+..++.+ |.
T Consensus 39 ~~~~~vwDIGaGsGsvsiEaa~~~~~-~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~----------------- 100 (198)
T PRK00377 39 FKGGKLVDVGCGTGSVSVEAALIVGE-GGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGE----------------- 100 (198)
T ss_pred CCCCEEEEECCCEEHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECC-----------------
T ss_conf 99899999177032999999996697-875999967888999999999980999885999525-----------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--CHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9997299999972699899998036766674--078999999986498499995043
Q gi|254781176|r 84 AAEECIDEITEMLDKTHMCFVTAGMGGGTGT--GAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 84 ~a~~~~~~i~~~~~~~~~~~~~ag~gggtgt--g~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
|-+. +..+....|.||| |||+|. ..-..+.+..+.-|.+++..||+=
T Consensus 101 -ap~~---l~~l~p~pD~vFI----GG~~g~l~~il~~~~~~L~~gGriVinaVtle 149 (198)
T PRK00377 101 -APEV---LPKLNPKSDRYFI----GGGGEELPEIIQAALEKIGKGGRIVADAILLE 149 (198)
T ss_pred -HHHH---HHCCCCCCCEEEE----ECCCCCHHHHHHHHHHHCCCCCEEEEEEECHH
T ss_conf -4887---7208998898999----78877789999999985799989999836298
No 364
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=39.92 E-value=23 Score=14.62 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHH--------HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999985899844999825578855--------189970485155425567888883899999997299999972699
Q gi|254781176|r 28 NAVNNMVSSGLQGVNFVVANTDAQALM--------MSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKT 99 (502)
Q Consensus 28 n~~~~~~~~~~~~~~~~~~ntd~~~l~--------~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~ 99 (502)
+++..|...++..+-|+||-|---+.- .+..|..+.+ |.|.+..-...+ +.
T Consensus 41 ~~~~e~~~k~i~rI~ivaCGTSyhA~l~~ky~~E~~~~ipv~v~~--------------------AsEF~~~~p~~~-~~ 99 (347)
T PRK11382 41 AIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAIS--------------------GWEFCDNTPYRL-DD 99 (347)
T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEE--------------------HHHHCCCCCCCC-CC
T ss_conf 999998737998799997508899999999999998699848950--------------------534200589888-99
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 8999980367666740789999999864984999950430
Q gi|254781176|r 100 HMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPF 139 (502)
Q Consensus 100 ~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf 139 (502)
+-++|..--.|-|.--.+- .+.||+.|+.|++|+-.|=
T Consensus 100 ~tlvI~ISQSGETaDtl~A--l~~ak~~Ga~tiaitN~~~ 137 (347)
T PRK11382 100 RCAVIGVSDYGKTEEVIKA--LELGRACGALTAAFTKRAD 137 (347)
T ss_pred CEEEEEEECCCCHHHHHHH--HHHHHHCCCCEEEEECCCC
T ss_conf 8699999368472999999--9999986996799867998
No 365
>PRK08638 threonine dehydratase; Validated
Probab=39.79 E-value=23 Score=14.66 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=9.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 378999616888899999999999
Q gi|254781176|r 262 QGLLISITGGSDLTLFEVDEAATR 285 (502)
Q Consensus 262 ~~~l~~i~~~~~~~l~e~~~~~~~ 285 (502)
|.|.+-++|| .+.+.-+.++..+
T Consensus 304 k~vv~vlsGG-Nid~~~l~~i~~~ 326 (329)
T PRK08638 304 KKVVAIISGG-NVDLSRVSQITGH 326 (329)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHH
T ss_conf 9789996899-9899999999841
No 366
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=39.78 E-value=23 Score=14.61 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 72699899998036766674078999999986498499995043000406788889999999998633354502788-87
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQN-LF 173 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~-l~ 173 (502)
.+...+.+.|..-+--|.......-+.+.||+.|+.++-=.. | . .|....+....-++.||.. |.
T Consensus 127 ~~~~~~~lvi~gslP~gv~~~~~~~li~~a~~~g~~vilD~s-g-----~--------~l~~~~~~~~~d~ikPN~~El~ 192 (309)
T PRK10294 127 EIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSS-G-----E--------ALSAALAIGNIELVKPNQKELS 192 (309)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCC-H-----H--------HHHHHHHCCCCCEECCCHHHHH
T ss_conf 456698899967889999999999999999976998995697-6-----7--------7655664389858857889999
Q ss_pred HHCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf 413665-31899974467999999
Q gi|254781176|r 174 RIANDK-TTFADAFSMADQVLYSG 196 (502)
Q Consensus 174 ~~~~~~-~~~~~af~~~d~~l~~~ 196 (502)
++.+.. .+..+....+.+++..+
T Consensus 193 ~l~g~~~~~~~~~~~aa~~l~~~g 216 (309)
T PRK10294 193 ALVNRELTQPDDVRKAAQEIVNSG 216 (309)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 984988899999999999999739
No 367
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=39.63 E-value=23 Score=14.59 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC--EEEEEEECC
Q ss_conf 97299999972699899998036766674078999999986498--499995043
Q gi|254781176|r 86 EECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV--LTVGVVTKP 138 (502)
Q Consensus 86 ~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~--~~~~~v~~p 138 (502)
...+++|.++++...+|+|+ |-||+|-+--|-++.-|.|. -..-+||-|
T Consensus 76 ~~~r~~i~~~i~~nqVvii~----GeTGsGKTTQiPq~~le~g~g~~~~I~~TQP 126 (1295)
T PRK11131 76 SQKKQDILEAIRDHQVVIVA----GETGSGKTTQLPKICLELGRGIKGLIGHTQP 126 (1295)
T ss_pred HHHHHHHHHHHHHCCEEEEE----CCCCCCHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 18999999999979969997----6899987889999999627999998997796
No 368
>pfam05985 EutC Ethanolamine ammonia-lyase light chain (EutC). This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) EC:4.3.1.7 sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia.
Probab=39.56 E-value=11 Score=16.87 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 83899999997299999972-6998999980
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEML-DKTHMCFVTA 106 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~-~~~~~~~~~a 106 (502)
+|++||+-..++...+++.- .+.|++|+++
T Consensus 80 RPDlGR~Ls~~s~~~L~~~~~~~~Dv~iVva 110 (237)
T pfam05985 80 RPDLGRRLDDESLARLKAKCVKGPDVQIVIA 110 (237)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9988787898999999863589998899975
No 369
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=39.34 E-value=23 Score=14.56 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCEEEEEEECCCHH--HHHHHHHH-CCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86179999668147--99999998-5899844999825578855189970485155425567888883899999997299
Q gi|254781176|r 14 KPRITVFGVGGGGG--NAVNNMVS-SGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 14 ~~~i~v~g~gg~g~--n~~~~~~~-~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
++||.+||=|..+- +.+-.+.. ..+.+.++..++-|...|..+..-.|.++ +-+|+..+. +.-.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v-----~~~g~~~kv--------~~tt 69 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLV-----EEAGAPVKV--------EATT 69 (442)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH-----HHHCCCEEE--------EEEC
T ss_conf 736999899753147999989841755776669998387788999999999999-----963998589--------9945
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE---EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999726998999980367666740789999999864984---9999504300040678888999999999863335450
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL---TVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~---~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
..+++|+|+|.|+.+.--||=. +--.--+|....|++ |.|+=.. |-|-|-...-.+=.+.++++|
T Consensus 70 d~~eAl~gAdfVi~~~rvG~l~---~r~~De~IplkyG~~gqET~G~GGi---~~glRtIpvildi~~~m~~~~------ 137 (442)
T COG1486 70 DRREALEGADFVITQIRVGGLE---AREKDERIPLKHGLYGQETNGPGGI---FYGLRTIPVILDIAKDMEKVC------ 137 (442)
T ss_pred CHHHHHCCCCEEEEEEEECCCC---CCHHHHCCCHHHCCCCCCCCCCCHH---HHHCCCCHHHHHHHHHHHHHC------
T ss_conf 8999844798899987506843---0022311326417045446472078---763024419999999999869------
Q ss_pred HHHHHHHHCCC
Q ss_conf 27888741366
Q gi|254781176|r 168 PNQNLFRIAND 178 (502)
Q Consensus 168 ~n~~l~~~~~~ 178 (502)
||--|+..++|
T Consensus 138 P~Aw~lNytNP 148 (442)
T COG1486 138 PNAWMLNYTNP 148 (442)
T ss_pred CCCEEEECCCH
T ss_conf 77478743686
No 370
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=38.80 E-value=24 Score=14.50 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHCCCC--
Q ss_conf 6766674078999999986498499995043000406---7888899999999986333545027--8887-413665--
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGS---RRMRVAESGIEALQETVDTLIVIPN--QNLF-RIANDK-- 179 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~---~r~~~a~~~~~~l~~~~d~~i~i~n--~~l~-~~~~~~-- 179 (502)
+|||||. +.+.+--|....=..+|||+ |.-=|. .|....--+.-.||++.=++.--+. .+++ ......
T Consensus 4 ~gGGtGl---~~~l~~Lk~~~~~itaIVtv-~DdGGSSg~LR~~~~~~~pGDiRn~L~ALa~~~~~~~~~~~~~~~~~~~ 79 (308)
T cd07187 4 FGGGTGL---STLLRGLKKYTHNLTAIVTV-TDDGGSSGRLRRELGIPAPGDIRNRLVALADDESLAQKLFFLYRRFGDF 79 (308)
T ss_pred ECCCCCH---HHHHHHHHHCCCCEEEEEEC-CCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 8465338---89999996278972899957-7389357999987599995689999998389985678999876325788
Q ss_pred ----CHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHCCCCEEEEE
Q ss_conf ----31899----97446799999988888765166555---58987878764158658998
Q gi|254781176|r 180 ----TTFAD----AFSMADQVLYSGVSCITDLMIKEGLI---NLDFADVRSVMRNMGRAMMG 230 (502)
Q Consensus 180 ----~~~~~----af~~~d~~l~~~v~~i~~~i~~~g~i---n~df~d~~~v~~~~g~a~~g 230 (502)
-++-. |......-+..+|.-++.++..+|.| -.+-.++...|.+ |..+.|
T Consensus 80 ~l~ghslGNL~L~al~~~~g~~~~ai~~~~~ll~v~g~VlP~t~~~~~L~a~l~d-G~~i~G 140 (308)
T cd07187 80 DLRGHSLGNLILAALTLITGSFAEAILLLSRLLGVRGRVLPVTNDPLHLVAELED-GTIVRG 140 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECC-CCEEEE
T ss_conf 8577818889999999870999999999999857998899563897079999779-989984
No 371
>PRK13660 hypothetical protein; Provisional
Probab=38.43 E-value=24 Score=14.46 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=51.0
Q ss_pred HHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999726-99899998036766674078999999986498499995043000406788889999999998633354502
Q gi|254781176|r 90 DEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIP 168 (502)
Q Consensus 90 ~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~ 168 (502)
..++..|+ |.+-++ .|.-=|.-.=|+-|+-++-++..-|-+++++ ||.--|.+=...-++-+..|++.||=+-.+.
T Consensus 33 ~~L~~llEeGleW~i--~gGqlGve~WaaEvvl~Lk~~Yp~lkla~i~-PF~~~~~~Wne~nq~k~~~l~~~aDf~~~vs 109 (183)
T PRK13660 33 RKLIALLEEGLEWVI--ISGQLGVEQWAAEVALELKEEYPDLKLAVIT-PFEEHGENWNEANQEKLANILKQVDFVKSIS 109 (183)
T ss_pred HHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHHHHHHCHHEEEEEEE-CCCCHHCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 999999977983999--7584229999999999998555030587685-5400234589789999999998488333015
Q ss_pred H
Q ss_conf 7
Q gi|254781176|r 169 N 169 (502)
Q Consensus 169 n 169 (502)
.
T Consensus 110 ~ 110 (183)
T PRK13660 110 K 110 (183)
T ss_pred C
T ss_conf 7
No 372
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=38.42 E-value=24 Score=14.46 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 8838999999972999999726998999980367666
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGT 112 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggt 112 (502)
|||++=-..|. ++|+.+|+||.-....|+.
T Consensus 14 GDpeLlTlkA~-------~~L~~advI~~P~s~~~~~ 43 (238)
T PRK05948 14 GDPELITLKGL-------RILQSASVVAFPAGLQGRP 43 (238)
T ss_pred CCHHHHHHHHH-------HHHHCCCEEEEECCCCCCH
T ss_conf 98388899999-------9997199999957667750
No 373
>PRK04648 consensus
Probab=38.40 E-value=24 Score=14.46 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 9988888765166555589878787641586589987614862048999988
Q gi|254781176|r 195 SGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEA 246 (502)
Q Consensus 195 ~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~ 246 (502)
-.|+-+-+.+.+.| | +-|+.+|.+++|.-... ..|.+|+++
T Consensus 228 P~I~~i~~~L~~~g-----~----a~MSGSGSt~FglF~~~--~~A~~a~~~ 268 (295)
T PRK04648 228 PAVEAVFQALSRVG-----T----PRLTGSGSGCFVEFATR--AAAEQALAQ 268 (295)
T ss_pred HHHHHHHHHHHCCC-----C----CCEEEECCCEEEEECCH--HHHHHHHHH
T ss_conf 89999999986059-----8----65795352138998999--999999996
No 374
>KOG1663 consensus
Probab=38.33 E-value=24 Score=14.45 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99729999997
Q gi|254781176|r 85 AEECIDEITEM 95 (502)
Q Consensus 85 a~~~~~~i~~~ 95 (502)
|.++.+++..-
T Consensus 134 a~esLd~l~~~ 144 (237)
T KOG1663 134 ALESLDELLAD 144 (237)
T ss_pred HHHHHHHHHHC
T ss_conf 56669999855
No 375
>PRK04943 consensus
Probab=38.29 E-value=24 Score=14.45 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=17.1
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 641586589987614862048999988
Q gi|254781176|r 220 VMRNMGRAMMGTGEASGHGRGIQAAEA 246 (502)
Q Consensus 220 v~~~~g~a~~g~g~~~g~~r~~~a~~~ 246 (502)
-|+.+|.+++|.-... ..|.+|+++
T Consensus 233 ~MSGSGstvFglf~s~--~~A~~~~~~ 257 (288)
T PRK04943 233 RLTGTGSCVFAEFSSR--SEAEAILAQ 257 (288)
T ss_pred EEECHHHEEEEEECCH--HHHHHHHHH
T ss_conf 1326405588998999--999999986
No 376
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=38.18 E-value=24 Score=14.44 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=85.3
Q ss_pred HHHHHHHHHHCCCEEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999999986498499995043-000406788889999999998633354502788874136653189997446799999
Q gi|254781176|r 117 APIIAKIARNKGVLTVGVVTKP-FHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYS 195 (502)
Q Consensus 117 ~p~ia~~a~~~~~~~~~~v~~p-f~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~ 195 (502)
-+-..+-|.+.|+-++.|-+.. -+|-.+.-.....+-..+..+..+-.+++.---|..++.++ +++...
T Consensus 12 ~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~~i~~~~Ha~YlINLas~~----------~e~~~k 81 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPD----------KEKVEK 81 (273)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCC----------HHHHHH
T ss_conf 9999999998599899997889888999999999999999999983996686442100457998----------899999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC--
Q ss_conf 988888765166555589878787641586589987614862048999988752701000224555378999616888--
Q gi|254781176|r 196 GVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSD-- 273 (502)
Q Consensus 196 ~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~-- 273 (502)
+++.+.+=+.+--.+.+++ |.-..|.+ .|.+...|=+|+.++++.++..+ .+. .+|+--+.|..
T Consensus 82 S~~~l~~el~~~~~lG~~~-----vV~HpGs~-~~~~~e~~i~~i~~~l~~vl~~~-------~~~-~lllEntAGqG~~ 147 (273)
T smart00518 82 SIERLIDEIKRCEELGIKA-----LVFHPGSY-LKQSKEEALNRIIESLNEVIDET-------KGV-VILLETTAGKGSQ 147 (273)
T ss_pred HHHHHHHHHHHHHHHCCCE-----EEECCCCC-CCCCHHHHHHHHHHHHHHHHHCC-------CCC-EEEEECCCCCCCC
T ss_conf 9999999999999809985-----87345313-58888999999999999998236-------986-7997457899884
Q ss_pred --CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf --89999999999999741688639998531346575479999851355
Q gi|254781176|r 274 --LTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVVATGIE 320 (502)
Q Consensus 274 --~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~~~v~~iatg~d 320 (502)
-++.|+.++.+.+.+. - -+|..+|. .-+.|.|+|
T Consensus 148 lG~~~eeL~~ii~~~~~~----~--rvgvClDT-------cH~fAaGyd 183 (273)
T smart00518 148 IGSTFEDLKEIIDLIKEL----D--RIGVCIDT-------CHIFAAGYD 183 (273)
T ss_pred CCCCHHHHHHHHHHCCCC----C--CEEEEEEC-------HHHHCCCCC
T ss_conf 686899999999973784----6--53787520-------202226578
No 377
>pfam00513 Late_protein_L2 Late Protein L2.
Probab=38.15 E-value=22 Score=14.74 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCH
Q ss_conf 9999997269989999803676667407
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGA 116 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~ 116 (502)
.|+|.++ ++-.||+ .|||=|||.|.
T Consensus 37 ADkILk~--gS~gVff-GGLGIGTG~Gt 61 (466)
T pfam00513 37 ADKILQY--GSLGVFF-GGLGIGTGSGS 61 (466)
T ss_pred HHHHHHH--CCCEEEC-CCCCCCCCCCC
T ss_conf 8988754--1021776-78763478887
No 378
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=37.99 E-value=25 Score=14.42 Aligned_cols=23 Identities=30% Similarity=0.801 Sum_probs=9.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 36766674078999999986498
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKGV 129 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~~ 129 (502)
|.+||.|+|-+-+.-++....+.
T Consensus 12 gIaG~SgSGKTTv~~~l~~~~~~ 34 (218)
T COG0572 12 GIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 98679877889999999998286
No 379
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=37.89 E-value=22 Score=14.76 Aligned_cols=18 Identities=39% Similarity=0.815 Sum_probs=11.7
Q ss_pred CCCCCH-HHHHHHHHHHCC
Q ss_conf 667407-899999998649
Q gi|254781176|r 111 GTGTGA-APIIAKIARNKG 128 (502)
Q Consensus 111 gtgtg~-~p~ia~~a~~~~ 128 (502)
|||||- |-++|+++.+.|
T Consensus 83 GTGSGYqAAlLA~Lvg~~G 101 (317)
T PRK13943 83 GGGTGYNAAVMSRVVGEKG 101 (317)
T ss_pred CCCCCHHHHHHHHHHCCCC
T ss_conf 5774389999999848787
No 380
>KOG2017 consensus
Probab=37.66 E-value=25 Score=14.38 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=16.6
Q ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 26998999980367666740789999999864984999950
Q gi|254781176|r 96 LDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVT 136 (502)
Q Consensus 96 ~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~ 136 (502)
|+++.++.|-| ||-|.-|++..| ..|+=++|+|-
T Consensus 64 Lk~s~VLVVGa---GGLGcPa~~YLa----aaGvG~lGiVD 97 (427)
T KOG2017 64 LKNSSVLVVGA---GGLGCPAAQYLA----AAGVGRLGIVD 97 (427)
T ss_pred CCCCCEEEECC---CCCCCHHHHHHH----HCCCCEECCCC
T ss_conf 37763799816---877887899998----73778130310
No 381
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=25 Score=14.37 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC-CEEEEEEECC
Q ss_conf 3676667407899999998649-8499995043
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKG-VLTVGVVTKP 138 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~-~~~~~~v~~p 138 (502)
=+|||||+ |.+-+..|+.. .-.-+|||.-
T Consensus 12 vlgGGtGl---~~lL~gLk~~~~~~iTaIVtva 41 (323)
T COG0391 12 VLGGGTGL---PKLLSGLKRLLPSEITAIVTVA 41 (323)
T ss_pred EECCCCCH---HHHHHHHHHHCCCEEEEEEEEC
T ss_conf 98687778---8999987761671599999965
No 382
>KOG3923 consensus
Probab=37.57 E-value=19 Score=15.25 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHH
Q ss_conf 8617999966814799999998
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVS 35 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~ 35 (502)
.|||.|||-|=-|+.+-=-+.+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~ 24 (342)
T KOG3923 3 TPRIAVIGAGVIGLSTALCILE 24 (342)
T ss_pred CCCEEEECCCCHHHHHHHHHHH
T ss_conf 7608997477101568999998
No 383
>pfam01933 UPF0052 Uncharacterized protein family UPF0052.
Probab=37.56 E-value=25 Score=14.37 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=18.0
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 6766674078999999986498499995043
Q gi|254781176|r 108 MGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 108 ~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
+|||||+ +.+++-.|....=..+|||+-
T Consensus 4 lgGGtG~---~~ll~gLk~~~~~ltaIV~~~ 31 (291)
T pfam01933 4 LGGGTGL---SKLLRGLKRLTSELTAIVTVA 31 (291)
T ss_pred ECCCCCH---HHHHHHHHHCCCCEEEEEECC
T ss_conf 8266248---899999974788659999876
No 384
>KOG2336 consensus
Probab=37.40 E-value=25 Score=14.35 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 7899999998649849999504300040-------6788889999999998633354502788874136653189997
Q gi|254781176|r 116 AAPIIAKIARNKGVLTVGVVTKPFHFEG-------SRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAF 186 (502)
Q Consensus 116 ~~p~ia~~a~~~~~~~~~~v~~pf~~eg-------~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af 186 (502)
...|.|++...+||=-+- -|.|.- +.-.+--+.||.+....++|++-|.-|-++++.+-+.|-.+-|
T Consensus 93 VGSV~AeMLTRCGIGkLl----LfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenF 166 (422)
T KOG2336 93 VGSVTAEMLTRCGIGKLL----LFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENF 166 (422)
T ss_pred HHHHHHHHHHHCCCCEEE----EEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHH
T ss_conf 227799998761766078----86133433302101004844022158899999997459872899740222452107
No 385
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=37.26 E-value=25 Score=14.34 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 98036766674078999999986498499995043000406788889999999998633354502788874136653189
Q gi|254781176|r 104 VTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFA 183 (502)
Q Consensus 104 ~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~ 183 (502)
+++.|-||-- +||-|.+.++.|+-++++--.-..+........+..-...|.++.= +.++.-+ .+.
T Consensus 2 vl~L~SGGiD---S~VAa~ll~krG~~V~~l~f~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~-----~~~ 67 (177)
T cd01712 2 ALALLSGGID---SPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKLARYSP------GHKLVVI-----IFT 67 (177)
T ss_pred EEEEECCCCH---HHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC------CCEEEEE-----ECC
T ss_conf 8999577816---9999999998799899999989998888999999999999999489------9628999-----453
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 997446799999988888765166555589-----878787641586589987614862048999988752701000224
Q gi|254781176|r 184 DAFSMADQVLYSGVSCITDLMIKEGLINLD-----FADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASM 258 (502)
Q Consensus 184 ~af~~~d~~l~~~v~~i~~~i~~~g~in~d-----f~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~ 258 (502)
.. ..+++...+ ++..--++ |.....+++.-|.-.+-||+.-|+ ++.. -+.| |. ..+
T Consensus 68 ~~--~~~~~~~~g---------~~~npcv~ckr~m~r~a~~~A~~~ga~~IvTGe~lGQ-vasq----t~~n-l~-~i~- 128 (177)
T cd01712 68 FF--VQKEIYGYG---------KEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ-VASQ----TLEN-LL-VIS- 128 (177)
T ss_pred HH--HHHHHHHHC---------CCCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCHHH-HHHH----HHHH-HH-HHH-
T ss_conf 89--999999708---------8889863629999999999999869989986652220-4476----8999-99-998-
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 555378999616888899999999999997
Q gi|254781176|r 259 KGSQGLLISITGGSDLTLFEVDEAATRIRE 288 (502)
Q Consensus 259 ~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~ 288 (502)
.+....++-=-+ .++=.|+-+++..|.-
T Consensus 129 ~~~~~~ilRPL~--~~dK~EI~~~A~~igt 156 (177)
T cd01712 129 SGTDLPILRPLI--GFDKEEIIGIARRIGT 156 (177)
T ss_pred HHHCCCCCCCCC--CCCHHHHHHHHHHHCC
T ss_conf 742564214888--9998999999998096
No 386
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.25 E-value=11 Score=17.07 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=33.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 17999966814799999998589984499982557885518997048515542556
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEG 71 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g 71 (502)
||.|||-|-.|.-+.-.....| .+.+..+.+...|.+.....+-.+.+...+|
T Consensus 5 ~VaViGaGtMG~gIA~~~a~aG---~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g 57 (503)
T PRK08268 5 TVAVIGAGAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAATLAKLVEKG 57 (503)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999796889999999999389---9089997998999999999999999999769
No 387
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=37.08 E-value=25 Score=14.32 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=29.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCC---CCCEEEEECCCHHHHH
Q ss_conf 617999966814799999998589---9844999825578855
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGL---QGVNFVVANTDAQALM 54 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~---~~~~~~~~ntd~~~l~ 54 (502)
.||.|.|=||.|-.++..+....+ .|-+.+++++|. +.+
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~n 42 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSN 42 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCC
T ss_conf 969996599765899999999999864895499994899-999
No 388
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=37.06 E-value=25 Score=14.32 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 88883899999997299999972699899998036766674078999999986498499
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~ 132 (502)
.+++|+.+..+|++ ++..-++++|+ |+.+|+.+-.++.++.+.+++.+
T Consensus 48 ~~~~p~~a~~~a~~-------Li~~d~V~~ii----G~~~S~~~~A~~~~~~~~~vp~i 95 (333)
T cd06331 48 PASDPAFAAKAARR-------LIRDDKVDAVF----GCYTSASRKAVLPVVERGRGLLF 95 (333)
T ss_pred CCCCHHHHHHHHHH-------HHHHCCCEEEE----CCCCCHHHHHHCHHHHHCCCCEE
T ss_conf 99998999999999-------99728964996----68760777764307887599778
No 389
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.93 E-value=25 Score=14.30 Aligned_cols=115 Identities=28% Similarity=0.393 Sum_probs=53.4
Q ss_pred HHHCCCEEEEEEECCCHH-----HHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 454386179999668147-----999999985899844999825578855189970485155425567888883899999
Q gi|254781176|r 10 ITELKPRITVFGVGGGGG-----NAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAA 84 (502)
Q Consensus 10 ~~~~~~~i~v~g~gg~g~-----n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~ 84 (502)
|++|.-|..|+|+||.|- .+-|++-+.|..-| .-|-+-.+....+ +-|-.
T Consensus 7 le~l~~~~lvfgiGGGGDvV~Ai~~y~~l~~~G~E~v------------lGsvvWER~VvDP------------~PGP~- 61 (328)
T COG4034 7 LESLEKKALVFGIGGGGDVVSAIHLYNFLRHFGEEPV------------LGSVVWERYVVDP------------EPGPR- 61 (328)
T ss_pred HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCCCCC------------CCCCEEEEEEECC------------CCCCC-
T ss_conf 8887542268851587304527899999886484201------------3641256775179------------99998-
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 997299999972699899998036766--674078999999986498499995043000406788889999999998
Q gi|254781176|r 85 AEECIDEITEMLDKTHMCFVTAGMGGG--TGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159 (502)
Q Consensus 85 a~~~~~~i~~~~~~~~~~~~~ag~ggg--tgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~ 159 (502)
+.++|+..+.=..-+.|.-|---- -|--+.|-|.+.||.+|.-.|++-.. -|-++. -+||..|-+
T Consensus 62 ---p~~~i~g~~~i~e~~~i~~~~t~~~rg~~~~~pqi~raaralg~e~v~v~~~----~gv~gl---~e~lk~lv~ 128 (328)
T COG4034 62 ---PPDEIRGVVRINEGLYIANGRTRAERGGRRVKPQIVRAARALGKEAVAVDLV----DGVRGL---AEGLKALVE 128 (328)
T ss_pred ---CHHHHHHHHHHCCCCEEECCCCHHHCCCCEECHHHHHHHHHHCCEEEEEECC----CCCCCH---HHHHHHHHH
T ss_conf ---9589610411214504505621010278253188999999809616999625----773118---899999998
No 390
>PRK12377 putative replication protein; Provisional
Probab=36.91 E-value=25 Score=14.30 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHH---HH
Q ss_conf 9999972999999726-9989999803676667407899999998---649849999504300040678888999---99
Q gi|254781176|r 82 RAAAEECIDEITEMLD-KTHMCFVTAGMGGGTGTGAAPIIAKIAR---NKGVLTVGVVTKPFHFEGSRRMRVAES---GI 154 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~-~~~~~~~~ag~gggtgtg~~p~ia~~a~---~~~~~~~~~v~~pf~~eg~~r~~~a~~---~~ 154 (502)
+.|-..++.-....+. ..++||+ |++|||=+..-+-|+. ..|- .|-|+|.|=-+. +.+.|.. ..
T Consensus 84 ~~a~~~a~~~~~~F~~~~~NlIf~-----G~pGtGKTHLA~AIg~~a~~~G~-sVlF~t~~dLv~---~L~~a~~~g~~~ 154 (248)
T PRK12377 84 RYALSQAKSIADELMTGCTNFVFS-----GKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMS---RLHESYDNGQSG 154 (248)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHHCCC-EEEEEEHHHHHH---HHHHHHHCCCCH
T ss_conf 999999999999873188608998-----99998788999999999998799-699988999999---999999848509
Q ss_pred HH-HHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHC
Q ss_conf 99-998--633354502788874136653189997446799999988888----765166555589878787641
Q gi|254781176|r 155 EA-LQE--TVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCIT----DLMIKEGLINLDFADVRSVMR 222 (502)
Q Consensus 155 ~~-l~~--~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~----~~i~~~g~in~df~d~~~v~~ 222 (502)
++ |+. .+|-||+ ++ +++...=.-...+|.+.|..=. .+|. +=|++|.....++.
T Consensus 155 ~k~l~~l~~~dLLII----------DE-lG~~~~s~~~~~llfqlI~~Ry~~~ks~Ii---TTNL~f~ew~~ilg 215 (248)
T PRK12377 155 EKFLQELCKVDLLVL----------DE-IGIQRETKNEQVVLNQIIDRRTASMRSVGM---LTNLNHEAMSTLLG 215 (248)
T ss_pred HHHHHHHHCCCEEEE----------HH-CCCCCCCHHHHHHHHHHHHHHHHCCCCEEE---ECCCCHHHHHHHHH
T ss_conf 999999733898986----------00-057889867999999999999855798689---75899779988875
No 391
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=36.87 E-value=25 Score=14.29 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=65.8
Q ss_pred EEEEECCCHHHHH-HHHHHCCCCCCEEEEEC----------------CCHHHHHHCCCCEEEEEC------CCCCCCCCC
Q ss_conf 9999668147999-99998589984499982----------------557885518997048515------542556788
Q gi|254781176|r 18 TVFGVGGGGGNAV-NNMVSSGLQGVNFVVAN----------------TDAQALMMSKAKQIIQLG------SGITEGLGA 74 (502)
Q Consensus 18 ~v~g~gg~g~n~~-~~~~~~~~~~~~~~~~n----------------td~~~l~~~~~~~~~~~g------~~~~~g~g~ 74 (502)
-|+||=|+=|.|| |.+...-+.+..|-++| |++-|.--|..--+=++- +=.-+||++
T Consensus 4 ~VlGvIGsDcHAVG~k~LDhaf~nagF~V~NlGv~~~~~efi~AAiet~ADAilvSSlYGhg~~DC~Glr~~c~eaGl~~ 83 (134)
T TIGR01501 4 VVLGVIGSDCHAVGNKVLDHAFRNAGFTVVNLGVLTAQEEFIKAAIETDADAILVSSLYGHGEIDCAGLRDKCAEAGLDA 83 (134)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 88870145402454378888873289889872131615788877322899889983020780001245789998658882
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf -----8883899999997299999972699899998036766674078999999986498
Q gi|254781176|r 75 -----GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV 129 (502)
Q Consensus 75 -----g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~ 129 (502)
|||--||++--..=+.+.+++ |.|-|| -.+|+-=-||+.+++++++
T Consensus 84 illYVGGNlvVGk~df~dV~~rFkeM--GfDRVf-------ap~t~~E~v~~~~k~dln~ 134 (134)
T TIGR01501 84 ILLYVGGNLVVGKTDFEDVEKRFKEM--GFDRVF-------APQTDLEAVVDALKKDLNV 134 (134)
T ss_pred EEEEECCEEEECCCCHHHHHHHHHHC--CCCEEE-------CCCCCHHHHHHHHHHHCCC
T ss_conf 79987676655776736788887645--873323-------6985822789999875069
No 392
>PRK10869 recombination and repair protein; Provisional
Probab=36.71 E-value=15 Score=16.04 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=13.8
Q ss_pred EEECCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 950430004067888--8999999999863335450
Q gi|254781176|r 134 VVTKPFHFEGSRRMR--VAESGIEALQETVDTLIVI 167 (502)
Q Consensus 134 ~v~~pf~~eg~~r~~--~a~~~~~~l~~~~d~~i~i 167 (502)
|+..-++.+|+-|.. -.--.+..|++....+|-|
T Consensus 92 iirR~i~~~GrSr~~INg~~vt~~~Lk~l~~~LidI 127 (553)
T PRK10869 92 LLRRVISSDGRSRGFINGTPVPLSQLRELGQLLIQI 127 (553)
T ss_pred EEEEEECCCCCEEEEECCEECCHHHHHHHHHHHHHH
T ss_conf 999998689965899999985699999999999998
No 393
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=36.70 E-value=21 Score=14.96 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHCCCCEEEEEECCCCCCCCCH----HHHHHHHHHHCCCE
Q ss_conf 7269989999803676667407----89999999864984
Q gi|254781176|r 95 MLDKTHMCFVTAGMGGGTGTGA----APIIAKIARNKGVL 130 (502)
Q Consensus 95 ~~~~~~~~~~~ag~gggtgtg~----~p~ia~~a~~~~~~ 130 (502)
.|..++++=|--|=|-..|.|. .-|-.+||+-+++-
T Consensus 130 ~l~~~~~iEIKi~QGAKPG~GG~Lpg~KVt~eIA~~R~~~ 169 (367)
T pfam01645 130 YLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSP 169 (367)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCC
T ss_conf 8325654799982587889788377354489999680899
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.59 E-value=12 Score=16.82 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHC
Q ss_conf 17999966814799999998589984499982557885518
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMS 56 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~ 56 (502)
||.|||-|--|+...-.....|. +.+..+.+...|.+.
T Consensus 6 ~VaViGAG~MG~giA~~~a~~G~---~V~l~D~~~e~~~~~ 43 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY---DVLLNDVSADRLESG 43 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHH
T ss_conf 89998966999999999996799---689997988999999
No 395
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=36.57 E-value=26 Score=14.26 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCE--EEEEEECCCC
Q ss_conf 367666740789999999864984--9999504300
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNKGVL--TVGVVTKPFH 140 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~~~~--~~~~v~~pf~ 140 (502)
.+-|.+|||=+-....+|+.+... .+-++.....
T Consensus 6 ll~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~ 41 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
T ss_conf 999999702999999999872668996899875998
No 396
>pfam06974 DUF1298 Protein of unknown function (DUF1298). This family represents the C-terminus (approximately 170 residues) of a number of hypothetical plant proteins of unknown function.
Probab=36.41 E-value=26 Score=14.24 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=28.3
Q ss_pred EEEEECCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99950430004----0678888999999999863335450
Q gi|254781176|r 132 VGVVTKPFHFE----GSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 132 ~~~v~~pf~~e----g~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
+|+|.+||..- =-.|.++|+.-+.++|....+++..
T Consensus 11 fG~V~lPl~i~~~~DPLerl~~ak~~mdrkK~Slea~~t~ 50 (153)
T pfam06974 11 FGYVLLPFSIALEDDPLEYVRKAKATIDRKKHSLEAAFTY 50 (153)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 5799997003665798999999999998713677889999
No 397
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=36.32 E-value=26 Score=14.23 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE----EECCCCCC---CHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997269989999803676667407899999998649849999----50430004---06788889999999998633
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV----VTKPFHFE---GSRRMRVAESGIEALQETVD 162 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~----v~~pf~~e---g~~r~~~a~~~~~~l~~~~d 162 (502)
+++.++|..+.--.|.+| +|....+|..-+.++|+.+|+-++.- -.+|.... |..- ..+.....++-+.+|
T Consensus 2 ~~~~~~l~~AkrPvii~G-~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~~~~~~~hp~~~G~~g-~~~~~~~~~~l~~aD 79 (138)
T pfam00205 2 EKAAELLAAAKRPVILVG-GGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYLGMLG-MHGTPAANEALEEAD 79 (138)
T ss_pred HHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHCCC
T ss_conf 899999996899199989-783522189999999998499879211125678988865577577-657799986553399
Q ss_pred HHHHHH
Q ss_conf 354502
Q gi|254781176|r 163 TLIVIP 168 (502)
Q Consensus 163 ~~i~i~ 168 (502)
.+|++=
T Consensus 80 lvl~lG 85 (138)
T pfam00205 80 LVLAIG 85 (138)
T ss_pred EEEEEC
T ss_conf 999978
No 398
>KOG2385 consensus
Probab=36.13 E-value=16 Score=15.86 Aligned_cols=26 Identities=42% Similarity=0.760 Sum_probs=19.6
Q ss_pred CCCEEEEEECCCC------CCCCCHHHHHHHH
Q ss_conf 9989999803676------6674078999999
Q gi|254781176|r 98 KTHMCFVTAGMGG------GTGTGAAPIIAKI 123 (502)
Q Consensus 98 ~~~~~~~~ag~gg------gtgtg~~p~ia~~ 123 (502)
|..+.|-+-|+|| |||-|++++++-.
T Consensus 261 G~Gt~~~~iG~~g~aat~~~T~aGsaav~ta~ 292 (633)
T KOG2385 261 GIGTLFPTIGLGGFAATGLGTGAGSAAVITAF 292 (633)
T ss_pred CHHHHEECCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 21231003453136676675133136888864
No 399
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=36.09 E-value=26 Score=14.21 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=26.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 8617999966814799999998589984499
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFV 44 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~ 44 (502)
+.+|.++|++|.|.-+..++...|+..+.++
T Consensus 26 ~a~VLliG~~glgaEIaKNLVLAGVgSvTl~ 56 (287)
T PTZ00245 26 HTSVALHGVAGAAAEAAKNLVLAGVRAVAVA 56 (287)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5879998473678999976402266449985
No 400
>pfam00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain.
Probab=35.82 E-value=26 Score=14.18 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=15.5
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCH---HHHHHHHHHHCCC
Q ss_conf 9997269989999803676667407---8999999986498
Q gi|254781176|r 92 ITEMLDKTHMCFVTAGMGGGTGTGA---APIIAKIARNKGV 129 (502)
Q Consensus 92 i~~~~~~~~~~~~~ag~gggtgtg~---~p~ia~~a~~~~~ 129 (502)
|.+..+.....|.+.+--|-|.||+ -.-|+++|++.|+
T Consensus 184 i~~~~~~g~~p~~VvataGTT~tGaiD~l~~i~~i~~~~~l 224 (370)
T pfam00282 184 IEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDL 224 (370)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99998679974499986377177134789999999998398
No 401
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=35.78 E-value=12 Score=16.81 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 78999999986498499995043
Q gi|254781176|r 116 AAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 116 ~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
+-.++.++.++.|+.++.=|..|
T Consensus 69 gL~~l~~vk~~~glpi~TeV~~~ 91 (264)
T PRK05198 69 GLKILAEVKETFGVPVLTDVHEP 91 (264)
T ss_pred HHHHHHHHHHHHCCCCCEEECCH
T ss_conf 98999999998499640146789
No 402
>PRK05586 biotin carboxylase; Validated
Probab=35.73 E-value=27 Score=14.17 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=99.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEE--CCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1799996681479999999858998449998--25578855189970485155425567888883899999997299999
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVA--NTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~--ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
||.|-.=|=..+-++-...+.|+ +.+++ ..|..++....|+.-+.||.. .|. ..--+.+.|.
T Consensus 4 kvLIANRGEIA~Ri~rt~~~lgi---~tVavys~~D~~a~hv~~Ade~~~lg~~---------~~~----~sYln~~~ii 67 (447)
T PRK05586 4 KILIANRGEIAVRIIRACREMGI---ETVAVYSEIDKDALHVQLADEAVCIGPA---------SSK----DSYLNIYNIL 67 (447)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CEEEECCCCCCCCHHHHHCCEEEECCCC---------CHH----HHHCCHHHHH
T ss_conf 49998987999999999998399---5999917033678547649899873999---------956----5114899999
Q ss_pred HHH--CCCCEEEEEECCCCCCCCC-HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 972--6998999980367666740-7899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 94 EML--DKTHMCFVTAGMGGGTGTG-AAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 94 ~~~--~~~~~~~~~ag~gggtgtg-~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
++. .++|-|+- |-|-= =-|-.|+.+.+.|+.-||= .|-..+ .+ --+..-.+|-+.+. +=++|--
T Consensus 68 ~~A~~~g~dAihP------GYGFLSEna~Fa~~~~~~Gi~fIGP--~~~~i~---~~-GdK~~ar~~a~~~g-vPv~pg~ 134 (447)
T PRK05586 68 SATVLTGAQAIHP------GFGFLSENSKFAKMCKECNIVFIGP--DSETIE---LM-GNKSNAREIMKKAG-VPVVPGS 134 (447)
T ss_pred HHHHHHCCCEEEC------CCCHHHCCHHHHHHHHHCCCEEECC--CHHHHH---HH-CCHHHHHHHHHHCC-CCCCCCC
T ss_conf 9999849989971------8553223899999999879879895--999999---85-38499999999849-9765686
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH---
Q ss_conf 88741366531899974467999999888887651665555898787876415865899876148620489999887---
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAA--- 247 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a--- 247 (502)
.+.-....++.+.|++ |--|-+ +|.....+|+.| .....++....+.+.|
T Consensus 135 -----~~~v~~~~ea~~~a~~------------iGyPv~-------lKAa~GGGGrGm---riv~~~~el~~~~~~a~~e 187 (447)
T PRK05586 135 -----EGEIENEEEALKIAEE------------IGYPVM-------VKASAGGGGRGI---RIVRSEEELIKAFNTAKSE 187 (447)
T ss_pred -----CCCCCCHHHHHHHHHH------------CCCCEE-------EECCCCCCCCEE---EEECCHHHHHHHHHHHHHH
T ss_conf -----8888999999999986------------298237-------630569997736---9989999999999999999
Q ss_pred -HH----CCCCCCCCCCCCCEEEEEEECC
Q ss_conf -52----7010002245553789996168
Q gi|254781176|r 248 -VA----NPLLDEASMKGSQGLLISITGG 271 (502)
Q Consensus 248 -~~----~pll~~~~~~~a~~~l~~i~~~ 271 (502)
.. +.++=+..|.++|-+=|.|.|.
T Consensus 188 a~~aFg~~~v~vEk~i~~~RHIEVQvl~D 216 (447)
T PRK05586 188 AKAAFGDDSMYIEKFIENPRHIEFQILGD 216 (447)
T ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 99827998468877247871799999970
No 403
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=35.61 E-value=27 Score=14.16 Aligned_cols=177 Identities=18% Similarity=0.289 Sum_probs=91.2
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999864984999950430004067888899999999986333545027888741366531899974467999999
Q gi|254781176|r 117 APIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSG 196 (502)
Q Consensus 117 ~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~ 196 (502)
|=-|-|.||||||-||||-++== -+ -+-.+.|++.+ . .++. +=.++|-.-=.||+-+
T Consensus 14 A~RIiRAC~ElGi~TVAVyS~aD-~d-alHV~LADEav-----------C---------IGea-~S~kSYL~IpnI~aAA 70 (451)
T TIGR00514 14 ALRIIRACKELGIATVAVYSTAD-RD-ALHVLLADEAV-----------C---------IGEA-PSAKSYLNIPNIIAAA 70 (451)
T ss_pred HHHHHHHHHHCCCCEEEECCHHH-HH-HHHHHHHCCCC-----------C---------CCCC-HHHCCCCHHHHHHHHH
T ss_conf 88999988864986398600441-33-23434302530-----------0---------6862-2112441158899988
Q ss_pred HHHHHHHHHCCCCC----CCCHHHHHHHHCCCCEEEEEEEE----CCCCC-HHHHHHHHHHHCCC--------CCCCC--
Q ss_conf 88888765166555----58987878764158658998761----48620-48999988752701--------00022--
Q gi|254781176|r 197 VSCITDLMIKEGLI----NLDFADVRSVMRNMGRAMMGTGE----ASGHG-RGIQAAEAAVANPL--------LDEAS-- 257 (502)
Q Consensus 197 v~~i~~~i~~~g~i----n~df~d~~~v~~~~g~a~~g~g~----~~g~~-r~~~a~~~a~~~pl--------l~~~~-- 257 (502)
.-.=++.| +||+= |=|||.+. .+.|.+.+|=-- --|+. .|+++.++| ..|. +++..
T Consensus 71 ~~tG~~Ai-HPGYGFLSENA~FAe~c---~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKka-GVP~VPGS~GP~~~~~~e~ 145 (451)
T TIGR00514 71 EITGADAI-HPGYGFLSENADFAEIC---EDHGITFIGPSPEAIRLMGDKVTAKETMKKA-GVPVVPGSDGPLVEDEEEA 145 (451)
T ss_pred HHCCCCEE-CCCCCHHHHHHHHHHHH---HHCCCEEECCCCCCCCCCCCHHHHHHHHHHC-CCCEECCCCCCCCCCHHHH
T ss_conf 77488076-28877344312478898---7388266678712011268868999999748-8766238888631027889
Q ss_pred CCCCCE----EEEEEE---CCCCCCH----HHHHHHHHHHHHHCC---CCCCEEEEEEECCCCC--CEEEEEEEEECCCC
Q ss_conf 455537----899961---6888899----999999999997416---8863999853134657--54799998513553
Q gi|254781176|r 258 MKGSQG----LLISIT---GGSDLTL----FEVDEAATRIREEVD---SEANIILGATFDEALE--GVIRVSVVATGIEN 321 (502)
Q Consensus 258 ~~~a~~----~l~~i~---~~~~~~l----~e~~~~~~~i~~~~~---~~a~ii~G~~~d~~~~--~~~~v~~iatg~d~ 321 (502)
+.=|+. |+|-=| ||.-|.+ +|+-+....-|.|+. .+. |+.+..=++ -.|.|-|+|=.+.+
T Consensus 146 ~~~A~~IGyPv~IKA~AGGGGRGmR~vR~~~El~~~~~~a~~EA~AAF~N~----~VYiEKfienPRH~E~QVLAD~~GN 221 (451)
T TIGR00514 146 VRIAKEIGYPVIIKATAGGGGRGMRVVREEDELVKLIKAARAEAAAAFNND----GVYIEKFIENPRHVEIQVLADKYGN 221 (451)
T ss_pred HHHHHHCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 999974789689996258997225886286899999999999997402879----6278633369940799987517888
Q ss_pred CCCC
Q ss_conf 2000
Q gi|254781176|r 322 RLHR 325 (502)
Q Consensus 322 ~~~~ 325 (502)
.++-
T Consensus 222 ~vyL 225 (451)
T TIGR00514 222 VVYL 225 (451)
T ss_pred EEEE
T ss_conf 7897
No 404
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=27 Score=14.15 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHH-HHCCCCEEEEEEEEC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 6555589878787-641586589987614-86204899998875270100022455537899961688889999999999
Q gi|254781176|r 207 EGLINLDFADVRS-VMRNMGRAMMGTGEA-SGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAAT 284 (502)
Q Consensus 207 ~g~in~df~d~~~-v~~~~g~a~~g~g~~-~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~ 284 (502)
+=.|-.|=-++.. |.+.+|.++|-...- ||.+|..+|++.. ..| ..-++||+.| |+.+-+-.-+-.
T Consensus 45 rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l-~~~---------~~~iIVNvQG--DeP~i~p~~I~~ 112 (247)
T COG1212 45 RVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKL-GLP---------DDEIIVNVQG--DEPFIEPEVIRA 112 (247)
T ss_pred EEEEECCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHC-CCC---------CCEEEEECCC--CCCCCCHHHHHH
T ss_conf 2899749889999999709789961788898008999999965-999---------6429998658--877779799999
Q ss_pred HHHHHCCCCCCEEEEEE
Q ss_conf 99974168863999853
Q gi|254781176|r 285 RIREEVDSEANIILGAT 301 (502)
Q Consensus 285 ~i~~~~~~~a~ii~G~~ 301 (502)
.++...+.++.+.-=+.
T Consensus 113 ~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 113 VAENLENSNADMATLAV 129 (247)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 99998737766045534
No 405
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=35.56 E-value=22 Score=14.73 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCC
Q ss_conf 9999972699899998036766674078999999986498-49999504300040
Q gi|254781176|r 90 DEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV-LTVGVVTKPFHFEG 143 (502)
Q Consensus 90 ~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~-~~~~~v~~pf~~eg 143 (502)
+.++..++.-.-++ |+|.||| ..||.|..-|+ |.+.+-+=.|..-|
T Consensus 5 ~~L~~~i~~~~pIi-----gagaGtG---lsAK~ae~gGaDlIi~ynsGrfRm~G 51 (268)
T pfam09370 5 AGLRAKIANGEPII-----GAGAGTG---LSAKCEEAGGADLILIYNSGRYRMAG 51 (268)
T ss_pred HHHHHHHHCCCCEE-----EEECCCC---HHHHHHHHCCCCEEEEECCCHHHHCC
T ss_conf 99999986799669-----9732511---65789985798699861540344358
No 406
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=35.46 E-value=27 Score=14.14 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=56.1
Q ss_pred HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH---------------HHHHHHH--------HHHHHHH-CCCC
Q ss_conf 98649849999504300040678888999999999863---------------3354502--------7888741-3665
Q gi|254781176|r 124 ARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETV---------------DTLIVIP--------NQNLFRI-ANDK 179 (502)
Q Consensus 124 a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~---------------d~~i~i~--------n~~l~~~-~~~~ 179 (502)
.+.-|.|+|=||-.-=+..+.+||..|+-.+..|.+.+ ++-+++| -++|..+ .+-+
T Consensus 74 ~~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~ 153 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGK 153 (261)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 04767748999947654205789999999999999999970354899996377653884786539999999983899998
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 3189997446799999988
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVS 198 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~ 198 (502)
+|+.+|+.++.+|+.+.-+
T Consensus 154 TPL~~aL~~a~ev~~r~~r 172 (261)
T COG1240 154 TPLADALRQAYEVLAREKR 172 (261)
T ss_pred CCHHHHHHHHHHHHHHHHC
T ss_conf 8439999999999997510
No 407
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=35.40 E-value=27 Score=14.13 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 789999999864984999950430004067--888899999999986333545027888741366531899974
Q gi|254781176|r 116 AAPIIAKIARNKGVLTVGVVTKPFHFEGSR--RMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFS 187 (502)
Q Consensus 116 ~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~--r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~ 187 (502)
..-.+.++.++..+-+ -||-+|++++|.. |.+.+..--++|++..+.-|++- ++++|-.+|-+
T Consensus 41 ~~~~l~~li~~~~~~~-vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~--------DERltTv~A~~ 105 (141)
T COG0816 41 DFNALLKLVKEYQVDT-VVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLW--------DERLSTVEAER 105 (141)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE--------CCCCCHHHHHH
T ss_conf 6999999999838887-99966768888713469999999999987649878998--------18657999999
No 408
>PRK06608 threonine dehydratase; Provisional
Probab=35.24 E-value=27 Score=14.12 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=7.4
Q ss_pred CCCEEEEEECCCCCCCCC
Q ss_conf 998999980367666740
Q gi|254781176|r 98 KTHMCFVTAGMGGGTGTG 115 (502)
Q Consensus 98 ~~~~~~~~ag~gggtgtg 115 (502)
..|.||+.+| |||+.+|
T Consensus 172 ~~D~vvv~vG-gGgl~~G 188 (330)
T PRK06608 172 SPDAIFASCG-GGGLISG 188 (330)
T ss_pred CCCEEEECCC-CCHHHHH
T ss_conf 9888995489-7247999
No 409
>PRK12483 threonine dehydratase; Reviewed
Probab=35.10 E-value=26 Score=14.21 Aligned_cols=169 Identities=22% Similarity=0.356 Sum_probs=82.8
Q ss_pred HHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 99997269-98999980367666740789999999864984999950430004067888899999-----9999863335
Q gi|254781176|r 91 EITEMLDK-THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGI-----EALQETVDTL 164 (502)
Q Consensus 91 ~i~~~~~~-~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~-----~~l~~~~d~~ 164 (502)
||.+-+.+ .|.||+..| |||--+|.+-.+-.+. -++-++||- | ||.--|.++...= ......+|.+
T Consensus 178 EIleq~p~~lD~V~vpVG-GGGLiaGia~~~K~~~--P~ikVIGVE--p---e~a~~m~~Sl~aG~~v~L~~v~tfaDG~ 249 (521)
T PRK12483 178 EILRQHPGPLDAIFVPVG-GGGLIAGIAAYVKYLR--PEIKVIGVE--P---DDSNCLQAALAAGERVVLGQVGLFADGV 249 (521)
T ss_pred HHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHC--CCCEEEEEE--E---CCCHHHHHHHHHCCEEECCCCCCCCCCC
T ss_conf 999867899888997678-7417889999998619--997089999--6---7876899999839836768888526764
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 4502788874136653189997446799-------999988888765166555589878787641586589987614862
Q gi|254781176|r 165 IVIPNQNLFRIANDKTTFADAFSMADQV-------LYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGH 237 (502)
Q Consensus 165 i~i~n~~l~~~~~~~~~~~~af~~~d~~-------l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~ 237 (502)
-| ...++ .||.-+=...|++ +..+++ |+ |.|-|.|+.-+|-
T Consensus 250 AV-------~~vG~-~tF~i~k~~VDdvv~Vs~deIcaAIk---di----------fe~tr~I~EPAGA----------- 297 (521)
T PRK12483 250 AV-------AQIGE-HTFELCRHYVDEVVTVSTDELCAAIK---DI----------YDDTRSITEPAGA----------- 297 (521)
T ss_pred CC-------CCCCH-HHHHHHHHCCCCEEEECHHHHHHHHH---HH----------HHHCCEEECCCHH-----------
T ss_conf 55-------77898-89999986199579989179999999---99----------9826666347056-----------
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCE
Q ss_conf 048999988752701000224555378999616888899999999999997416886399985313465754
Q gi|254781176|r 238 GRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGV 309 (502)
Q Consensus 238 ~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~~~~~ 309 (502)
=++.++++-+. ...++| .-||.|.+|..|.++-+..+++ |.++++.-+.++++++.|.-|.-
T Consensus 298 -lalAglk~y~~-----~~~~~g--k~~v~i~sGaN~nF~rLr~v~e--ra~~Ge~rE~~~~v~IpE~~Gsf 359 (521)
T PRK12483 298 -LAVAGIKKYVE-----REGIEG--QTLVAIDSGANVNFDRLRHVAE--RAELGEQREAIIAVTIPEQPGSF 359 (521)
T ss_pred -HHHHHHHHHHH-----HCCCCC--CCEEEEECCCCCCCCCCHHHHH--HHHCCCCCEEEEEEECCCCCCHH
T ss_conf -67999999998-----548876--7379995046667542135577--65316341479999558888689
No 410
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=35.03 E-value=27 Score=14.09 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 6674078999999
Q gi|254781176|r 111 GTGTGAAPIIAKI 123 (502)
Q Consensus 111 gtgtg~~p~ia~~ 123 (502)
+||||.||+.+=+
T Consensus 113 AtGTGiaP~~Sml 125 (248)
T PRK10926 113 ATGTAIGPYLSIL 125 (248)
T ss_pred EECCCHHHHHHHH
T ss_conf 6045789999998
No 411
>PRK05939 hypothetical protein; Provisional
Probab=34.97 E-value=27 Score=14.09 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=11.8
Q ss_pred CCCCC-CCHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 65555-8987878764158658998761486
Q gi|254781176|r 207 EGLIN-LDFADVRSVMRNMGRAMMGTGEASG 236 (502)
Q Consensus 207 ~g~in-~df~d~~~v~~~~g~a~~g~g~~~g 236 (502)
||+-. -++.=.+..|+. +..||.+.-.++
T Consensus 292 PgL~s~p~~~~a~~~~~g-~gg~~sf~l~~~ 321 (396)
T PRK05939 292 PGLASHPQHARATELFGA-YGGLLSFELADG 321 (396)
T ss_pred CCCCCCCCHHHHHHHCCC-CCCEEEEEECCH
T ss_conf 999999449999986648-863799996688
No 412
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=34.93 E-value=27 Score=14.08 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=88.4
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEE-EECCC-----HHHHHHCCCCEEEEECC--------------CCCCCCCCCC
Q ss_conf 7999966814799999998589984499-98255-----78855189970485155--------------4255678888
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFV-VANTD-----AQALMMSKAKQIIQLGS--------------GITEGLGAGS 76 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~-~~ntd-----~~~l~~~~~~~~~~~g~--------------~~~~g~g~g~ 76 (502)
-.-+-.||.|.|+---+-+.|.. +.++ .+-.| .+.|...........-. ..|.=...|
T Consensus 33 ~~~~~~GGKG~NvA~~la~LG~~-~~~~g~vG~d~~~~~~~~l~~~gi~~~~~~v~g~tr~~v~i~~~~g~~t~~~~~G- 110 (312)
T PRK09513 33 TTGLHAAGKGINVAKVLKDLGID-VTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGEVTDFNFSG- 110 (312)
T ss_pred CCEEECCCHHHHHHHHHHHCCCC-EEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCC-
T ss_conf 01550587399999999986998-3999986786579999999974998228981587715899994799689974578-
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 83899999997299999972699899998036766674078999999986498499995043000406788889999999
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEA 156 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~ 156 (502)
|++.......-.+.....++..|+|.|..-|=.|.-.-..--+.+.||+.|+.++-=.. |. -. ...
T Consensus 111 -~~i~~~~~~~l~~~~~~~~~~~d~vvisGslp~g~~~~~~~~~~~~a~~~g~~vvlD~~------~~-~l------~~~ 176 (312)
T PRK09513 111 -FEVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSS------RE-AL------VAG 176 (312)
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC------CH-HH------HHH
T ss_conf -88999999999999986564489999957889999989999999999867999999897------08-99------988
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986333545027888741-3665-318999744679999998888
Q gi|254781176|r 157 LQETVDTLIVIPNQNLFRI-ANDK-TTFADAFSMADQVLYSGVSCI 200 (502)
Q Consensus 157 l~~~~d~~i~i~n~~l~~~-~~~~-~~~~~af~~~d~~l~~~v~~i 200 (502)
|+.. -.++-||..=++. .+.. .+..+.+..+..+...+++.+
T Consensus 177 l~~~--p~likPN~~El~~l~g~~~~~~~~~~~aa~~l~~~G~~~V 220 (312)
T PRK09513 177 LKAA--PWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHV 220 (312)
T ss_pred HHHC--CCEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8619--9589218889999848999999999999999987177708
No 413
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=34.92 E-value=27 Score=14.08 Aligned_cols=102 Identities=22% Similarity=0.218 Sum_probs=54.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 617999966814799999998589984499982557885518997-0485155425567888883899999997299999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK-QIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~-~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
-+|.+||.=|||=.+|-+.....+. ..|+ +||..--.+...+ ..|. . +.|+....+-..++.
T Consensus 3 ~~I~LiG~mGsGKstiGk~LA~~L~-~~fi--D~D~~Ie~~~g~sI~eif------~--------~~Ge~~FR~~E~~~l 65 (172)
T PRK03731 3 QPLFLVGPRGCGKTTVGMALAQALG-YRFV--DTDLWLQSTLQMTVAEIV------E--------REGWAGFRARESAAL 65 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC-CCEE--ECCHHHHHHHCCCHHHHH------H--------HHCHHHHHHHHHHHH
T ss_conf 9889988999988999999999859-9979--786999988398999999------9--------839899999999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 97269989999803676667407899999998649849999504300
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~ 140 (502)
+.|.....|+- .|||+=. .|-.-++-++.| +|-+...||.
T Consensus 66 ~~l~~~~~VIs---tGGG~v~--~~~n~~~L~~~g--~vv~L~~~~~ 105 (172)
T PRK03731 66 EAVTAPSTVVA---TGGGIIL--TEENRAFMRNNG--IVIYLCAPVS 105 (172)
T ss_pred HHHCCCCEEEE---ECCCCCC--CHHHHHHHHHCC--EEEEEECCHH
T ss_conf 98427882898---0786426--899999999689--9999979999
No 414
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=34.88 E-value=27 Score=14.08 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHHHHHCCCCEEEEEECCCCCC
Q ss_conf 9999726998999980367666
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGT 112 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggt 112 (502)
.+...|.+..+-.=.|+=||||
T Consensus 54 ~LL~~L~~~~iflpSaCGG~gt 75 (408)
T PRK05464 54 KLLGALASSGIFVSSACGGGGS 75 (408)
T ss_pred HHHHHHHHCCCCCCCCCCCCCE
T ss_conf 4899886489362237899964
No 415
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=34.87 E-value=25 Score=14.30 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8389999999729999997269989999803676667407899999998649
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKG 128 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~ 128 (502)
--+.|+.|-.--.+||.++++...|++.| ||||- |--|-.|+-++|
T Consensus 42 i~DrG~~av~Plv~Ei~~~~~~hk~li~T---GgG~R---aRHiy~igldLg 87 (262)
T cd04255 42 IIDRGAEAVLPLVEEIVALRPEHKLLILT---GGGTR---ARHVYSIGLDLG 87 (262)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCEEEEE---CCCHH---HHHHHHHHHCCC
T ss_conf 00373342432899999751315289983---67500---334312341479
No 416
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=34.79 E-value=25 Score=14.30 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=50.0
Q ss_pred HCCCCEEEEEECCCCCCCCCH-HHHHHHHHHHCCCEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 269989999803676667407-899999998649849999504300040-678888999999999863335450278887
Q gi|254781176|r 96 LDKTHMCFVTAGMGGGTGTGA-APIIAKIARNKGVLTVGVVTKPFHFEG-SRRMRVAESGIEALQETVDTLIVIPNQNLF 173 (502)
Q Consensus 96 ~~~~~~~~~~ag~gggtgtg~-~p~ia~~a~~~~~~~~~~v~~pf~~eg-~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~ 173 (502)
++..+-|.-+ |||||. +.++|+++++.|- ++++ |- +.-...|.+-+.++. .+-+.++.-| ..
T Consensus 71 l~~g~~VLeI-----GtGsGY~tAlLa~l~~~~g~-V~~i-------E~~~~l~~~A~~~l~~~~--~~nV~~~~gd-g~ 134 (205)
T pfam01135 71 LKPGMRVLEI-----GSGSGYLTACFARMVGEVGR-VVSI-------EHIPELVEIARRNLEKLG--LENVIVVVGD-GR 134 (205)
T ss_pred CCCCCEEEEE-----CCCCCHHHHHHHHHHCCCCE-EEEE-------ECCHHHHHHHHHHHHHHC--CCCEEEEECC-CC
T ss_conf 8999989996-----69965999999998387876-9998-------358999999999999848--8865898456-45
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 4136653189997446799999988888765166555589878787641586589987614
Q gi|254781176|r 174 RIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEA 234 (502)
Q Consensus 174 ~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~ 234 (502)
.-+.+..+| |.|...+-+.---..+..-|+.+|.-++=+|..
T Consensus 135 ~g~~~~apf-------------------D~Iiv~aa~~~iP~~l~~qL~~gGrLv~pvg~~ 176 (205)
T pfam01135 135 QGWPEFAPY-------------------DAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPN 176 (205)
T ss_pred CCCCCCCCC-------------------CEEEEEEECCCCCHHHHHHCCCCCEEEEEECCC
T ss_conf 588333980-------------------589997506768899999628797899998789
No 417
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=34.73 E-value=17 Score=15.62 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 88887651665555898787876415
Q gi|254781176|r 198 SCITDLMIKEGLINLDFADVRSVMRN 223 (502)
Q Consensus 198 ~~i~~~i~~~g~in~df~d~~~v~~~ 223 (502)
+.+.|++..-.-+.+.+..+-.+|..
T Consensus 133 ~~~~dvL~~Fps~~~pl~~ll~~lp~ 158 (384)
T cd06206 133 VSVLDLLERFPSIALPLATFLAMLPP 158 (384)
T ss_pred CCHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf 98999998687657799999985754
No 418
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=34.67 E-value=27 Score=14.05 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=26.6
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCH
Q ss_conf 7999966814799999998589984499982557
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDA 50 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~ 50 (502)
+.|||=|-|||-|--..-+.|.+ |-+++.++|.
T Consensus 2 ViVIGgGhAG~EAA~aaAr~G~~-v~Lit~~~~~ 34 (391)
T pfam01134 2 VIVIGGGHAGCEAALAAARMGAK-VLLITHNTDT 34 (391)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 79999878999999999868996-8999734243
No 419
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=34.67 E-value=28 Score=14.05 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=70.0
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEE-ECCCH------HHHHHCCCCEE-EEE-CCCCCC----CCCCC---------
Q ss_conf 9999668147999999985899844999-82557------88551899704-851-554255----67888---------
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVV-ANTDA------QALMMSKAKQI-IQL-GSGITE----GLGAG--------- 75 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~-~ntd~------~~l~~~~~~~~-~~~-g~~~~~----g~g~g--------- 75 (502)
.-...||+|.|+--.+.+.|.+ +.|+. +-.|. ++|....++.. ++. ....|. -+...
T Consensus 31 ~~~~~GG~~~NvA~~la~LG~~-~~~~~~vG~D~~G~~i~~~l~~~gV~~~~v~~~~~~~T~~~~i~v~~~g~~~~~~~~ 109 (292)
T cd01174 31 FETGPGGKGANQAVAAARLGAR-VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVP 109 (292)
T ss_pred EEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 8975797799999999987998-699997458807899999998628875525775699973168898799966776642
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf -8838999999972999999726998999980367666740789999999864984999950430004067888899999
Q gi|254781176|r 76 -SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGI 154 (502)
Q Consensus 76 -~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~ 154 (502)
++..+ -.+..+.....+..++++++... .-..+.--+++.||+.|+.++- -.-| +...+
T Consensus 110 ~a~~~~----~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~a~~~~~~v~~-D~~~-----------~~~~~ 169 (292)
T cd01174 110 GANGEL----TPADVDAALELIAAADVLLLQLE----IPLETVLAALRAARRAGVTVIL-NPAP-----------ARPLP 169 (292)
T ss_pred CCCCCC----CHHHHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHHHHCCCCEEE-ECHH-----------HHHHH
T ss_conf 732007----99899999987433989999468----9989999999999864997897-1366-----------66666
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99998633354502788
Q gi|254781176|r 155 EALQETVDTLIVIPNQN 171 (502)
Q Consensus 155 ~~l~~~~d~~i~i~n~~ 171 (502)
.++.+++|-+ ++|+.
T Consensus 170 ~~~l~~~d~l--~~N~~ 184 (292)
T cd01174 170 AELLALVDIL--VPNET 184 (292)
T ss_pred HHHHHHCCEE--EECHH
T ss_conf 9988509898--70899
No 420
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=34.66 E-value=28 Score=14.05 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH---HHHHHCCCCC-C
Q ss_conf 31899974467999999888887651665555898787876415865899876148620489999---8875270100-0
Q gi|254781176|r 180 TTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAA---EAAVANPLLD-E 255 (502)
Q Consensus 180 ~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~---~~a~~~pll~-~ 255 (502)
+||-.-|..-=+-|.+..+-+.+..-+ -.++.-+|.| +|+|...-++-...++ .+-+.=|+-. .
T Consensus 195 iTlGq~f~a~a~~l~r~~~Rl~~~~~~-----------l~~l~lGGtA-vGTGlna~~~f~~~v~~~L~~~tgl~~~~a~ 262 (462)
T PRK00485 195 LTLGQEFSGYAAQLEHGIERIEAALPH-----------LYELALGGTA-VGTGLNAHPGFAEKVAAELAELTGLPFVTAP 262 (462)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEECC
T ss_conf 117999999999999999999999999-----------9987437753-2378888810589999999998599971268
Q ss_pred CCCC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCC
Q ss_conf 2245--5537899961688889999999999999741-6886
Q gi|254781176|r 256 ASMK--GSQGLLISITGGSDLTLFEVDEAATRIREEV-DSEA 294 (502)
Q Consensus 256 ~~~~--~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~-~~~a 294 (502)
+.+. ..+..++.+.+.-...-..+..+++-||-.. +|.+
T Consensus 263 n~~~a~~~~D~~~e~~~~L~~lA~~L~KianDlRll~SGPr~ 304 (462)
T PRK00485 263 NKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRC 304 (462)
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 789998588299999999999999999999999997268766
No 421
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=34.50 E-value=28 Score=14.03 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=29.5
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999726998999980367666740789999999864984-99995043000406788889999999998633
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL-TVGVVTKPFHFEGSRRMRVAESGIEALQETVD 162 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~-~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d 162 (502)
.+.++| |.+.=+|.|+|||-++ |-.|-..-+.|.| +++-..++ ..+-.+-|+++++..|
T Consensus 3 ~~t~~l-gi~~PIiqapM~~vs~----~~LaaAVs~AGglG~i~~~~~~--------~e~l~~~i~~~~~~t~ 62 (330)
T pfam03060 3 RFTDLL-KIKYPIVQPPMGGIST----PELAAAVSEAGGLGVLGAGYLT--------PDRLEKEIRKVKELTD 62 (330)
T ss_pred HHHHHH-CCCCCEECCCCCCCCC----HHHHHHHHHCCCEEEECCCCCC--------HHHHHHHHHHHHHHHC
T ss_conf 666875-8982879888776786----9999999967988861277699--------9999999999998648
No 422
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=34.50 E-value=28 Score=14.03 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEEC-CCCCCCHHHHHHHH
Q ss_conf 6667407899999998649849999504-30004067888899
Q gi|254781176|r 110 GGTGTGAAPIIAKIARNKGVLTVGVVTK-PFHFEGSRRMRVAE 151 (502)
Q Consensus 110 ggtgtg~~p~ia~~a~~~~~~~~~~v~~-pf~~eg~~r~~~a~ 151 (502)
||..+|-+-.--++|.+.+--.+=|.|+ ||.-|.+.|.+.-+
T Consensus 6 GG~rSGKS~~AE~la~~~~~~~~YiAT~~~~D~Em~~RI~~Hr 48 (169)
T cd00544 6 GGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 7866368999999998459981999788988989999999999
No 423
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=34.44 E-value=28 Score=14.03 Aligned_cols=38 Identities=32% Similarity=0.642 Sum_probs=19.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHH
Q ss_conf 861799996681479999999858998449998255788
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQA 52 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~ 52 (502)
++||..||.=|||-.+|-++.-..+. ..|+=.|.-...
T Consensus 133 ~~rIaLIGlmGaGKSTvGr~LA~~Lg-~pFvDlD~~IEk 170 (304)
T PRK08154 133 RPRIALIGLRGAGKSTLGRMLAARLG-VPFVELNREIER 170 (304)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC-CCEEECHHHHHH
T ss_conf 78479889999988899999999959-897787799999
No 424
>PRK08312 putative indolepyruvate oxidoreductase subunit B; Reviewed
Probab=34.41 E-value=28 Score=14.02 Aligned_cols=170 Identities=18% Similarity=0.297 Sum_probs=78.0
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 86-179999668147999999985--89984499982557885518--99704851554255678888838999999972
Q gi|254781176|r 14 KP-RITVFGVGGGGGNAVNNMVSS--GLQGVNFVVANTDAQALMMS--KAKQIIQLGSGITEGLGAGSHPEVGRAAAEEC 88 (502)
Q Consensus 14 ~~-~i~v~g~gg~g~n~~~~~~~~--~~~~~~~~~~ntd~~~l~~~--~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~ 88 (502)
+| +|.|.||||.|.=+|..++-. .+.| +.+--||.--|..- .+-..|-|-+.. + +..|-
T Consensus 9 ~P~~i~i~giGGtGv~tl~~~l~~AA~~~G--~~~~~ld~tGlAQK~GaVvshvria~~~----~-~~~pv--------- 72 (509)
T PRK08312 9 RPIKIAILAMGGQGGGVLADWIVELAEAAG--WVAQSTSVPGVAQRTGATIYYVELFPPA----G-GRAPV--------- 72 (509)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCEEEEEEECCCC----C-CCCCE---------
T ss_conf 771478987668741019999999999619--8002400212024798538999974687----7-76762---------
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC----EEEEEEECCCCCC-------CHHHHHHHHHHHHHH
Q ss_conf 99999972699899998036766674078999999986498----4999950430004-------067888899999999
Q gi|254781176|r 89 IDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV----LTVGVVTKPFHFE-------GSRRMRVAESGIEAL 157 (502)
Q Consensus 89 ~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~----~~~~~v~~pf~~e-------g~~r~~~a~~~~~~l 157 (502)
-..+..-.++|+|+-+--| +|--+..+|. -|..|+..--.|- |..+. -...=+..+
T Consensus 73 -~a~~~~~G~aDlvia~Dlv-----------~A~~a~~~g~v~~~RT~~i~sthrv~~~~e~~~~~d~~~-d~~~l~~~~ 139 (509)
T PRK08312 73 -LALMPTPGDVDIVIAAELM-----------EAGRAVLRGFVTPDRTTLIASTHRVFAIAEKMAPGDGRA-DSDAVLEAA 139 (509)
T ss_pred -EECCCCCCCCCEEEEEHHH-----------HHCCHHHHCCCCCCCEEEEEECCCCCCCCCEECCCCCCC-CHHHHHHHH
T ss_conf -3126887776778763066-----------528588737667886489951786666754215888878-979999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 98633354502788874136653189997446799999988888765166555589878787641586589
Q gi|254781176|r 158 QETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAM 228 (502)
Q Consensus 158 ~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~ 228 (502)
+.....++.++-..|..-.+. +. +-+|. -.+.+.|.+-+.-..+...++-+|.++
T Consensus 140 ~~~a~~~i~~D~~~lA~~~G~---~i------sa~Lf-------GaA~Q~G~LP~s~eAiE~AIelNGvaV 194 (509)
T PRK08312 140 RIAAKRFIAFDMEALAEKAGS---VI------SASLF-------GALAGSGALPFPREAFEAVIRASGKGV 194 (509)
T ss_pred HHHHHHHHHHCHHHHHHHCCC---HH------HHHHH-------HHHHHCCCCCCCHHHHHHHHHHHCHHH
T ss_conf 998755566179999986688---18------89999-------999847988889999999999728429
No 425
>pfam06048 DUF927 Domain of unknown function (DUF927). Family of bacterial proteins of unknown function.
Probab=34.39 E-value=28 Score=14.02 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf 4862048999988752701000224555378999616888899999999
Q gi|254781176|r 234 ASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEA 282 (502)
Q Consensus 234 ~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~ 282 (502)
+.|.-|..-|+-.|+.+|||. +-|+.+..||+.|.+...=.-.-.+
T Consensus 165 ~~gn~~~~~~v~~afa~pLl~---~~~~~~~~~hl~g~Ss~GKTt~~~~ 210 (284)
T pfam06048 165 CVGNPLLILAVSAALAAPLLK---LLGLEGGGFHFVGDSSTGKTTALKL 210 (284)
T ss_pred HCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 758989999999998999999---8589855999865898766899998
No 426
>PRK08246 threonine dehydratase; Provisional
Probab=34.33 E-value=28 Score=14.01 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=30.8
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 70485155425567888883899999997299999972699899998036766674078999999986498499995043
Q gi|254781176|r 59 KQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 59 ~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
...|.+-.+... -+|+=-..|...+....+ ..+..+ ++.=+|.+|-+ +|-+|+.+|+-++-| +|
T Consensus 34 g~~v~lK~E~~q--ptGSfK~RGa~~~il~~~-----~~~~~v---v~~SsGN~g~a----lA~~a~~~G~~~~I~--mP 97 (307)
T PRK08246 34 PAPVWLKLEHLQ--HTGSFKARGAFNRLLARP-----VPAAGV---VAASGGNHGAA----VAYAAASLGVPATVF--VP 97 (307)
T ss_pred CCEEEEEECCCC--CCCCCHHHHHHHHHHHHH-----CCCCCE---EEECCCHHHHH----HHHHHHHCCCCEEEE--EC
T ss_conf 988999850069--877809999999998543-----369958---99678648999----999999818956999--63
Q ss_pred C
Q ss_conf 0
Q gi|254781176|r 139 F 139 (502)
Q Consensus 139 f 139 (502)
-
T Consensus 98 ~ 98 (307)
T PRK08246 98 E 98 (307)
T ss_pred C
T ss_conf 8
No 427
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=34.25 E-value=28 Score=14.01 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=18.1
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 69989999803676667407899999998649849999504
Q gi|254781176|r 97 DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTK 137 (502)
Q Consensus 97 ~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~ 137 (502)
+|.+|+| +||-+-.-.+.++|++.-=.-..++.-
T Consensus 96 ~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 96 DGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred CCCCEEE-------ECCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6997899-------846205569999997789976999614
No 428
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase; InterPro: IPR014120 This entry contains solanesyl diphosphate synthases from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterised by heterologous expression as a solanesyl diphosphate synthase..
Probab=34.16 E-value=17 Score=15.61 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=11.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 88741366531899974467999
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVL 193 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l 193 (502)
.|++ ||..+++ ||.+.|+||
T Consensus 201 ~LY~-yGkhLGL--AFQvvDDiL 220 (325)
T TIGR02749 201 DLYE-YGKHLGL--AFQVVDDIL 220 (325)
T ss_pred HHHH-HHHHHCC--HHHHHHHHH
T ss_conf 9877-6566163--354455451
No 429
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=34.13 E-value=28 Score=13.99 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCH
Q ss_conf 88888389999999729999997269989-999803676667407
Q gi|254781176|r 73 GAGSHPEVGRAAAEECIDEITEMLDKTHM-CFVTAGMGGGTGTGA 116 (502)
Q Consensus 73 g~g~~~~~g~~~a~~~~~~i~~~~~~~~~-~~~~ag~gggtgtg~ 116 (502)
...|.|...-.+..+..+.|++. .+|. +.+|+||||+-.-+.
T Consensus 52 p~dG~pt~d~~~yr~~l~rIr~~--~~D~vin~ttg~g~~~~~~~ 94 (298)
T COG3246 52 PEDGRPTLDPEAYREVLERIRAA--VGDAVINLTTGEGGDLVMPT 94 (298)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCH
T ss_conf 89998666999999999999714--89869995044455565565
No 430
>pfam02680 DUF211 Uncharacterized ArCR, COG1888.
Probab=34.02 E-value=19 Score=15.32 Aligned_cols=25 Identities=16% Similarity=0.551 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 5898787876415865899876148
Q gi|254781176|r 211 NLDFADVRSVMRNMGRAMMGTGEAS 235 (502)
Q Consensus 211 n~df~d~~~v~~~~g~a~~g~g~~~ 235 (502)
||||.+++.++.+.|.++-.+-+-.
T Consensus 57 ~id~d~i~~~IE~~Gg~IHSIDeVv 81 (91)
T pfam02680 57 DIDFDEIKEAIEELGGVIHSIDEVV 81 (91)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 8797999999997598377451143
No 431
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=33.76 E-value=28 Score=13.95 Aligned_cols=82 Identities=16% Similarity=0.277 Sum_probs=42.7
Q ss_pred EECCCCCCCCCHHH-----HHHHHHHHCCCE---EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 80367666740789-----999999864984---9999504300040678888999999999863335450278887413
Q gi|254781176|r 105 TAGMGGGTGTGAAP-----IIAKIARNKGVL---TVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIA 176 (502)
Q Consensus 105 ~ag~gggtgtg~~p-----~ia~~a~~~~~~---~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~ 176 (502)
|-=+||||=|=..| ++..+.+..++. -+.+=.-|=.+.-.+=......|+.++.=-+-+. |+++++..
T Consensus 69 tiy~GGGTPSlL~~~~l~~ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf----~~~~L~~l 144 (399)
T PRK07379 69 TVFFGGGTPSLLPVEQLERILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAF----QDELLALC 144 (399)
T ss_pred EEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCC----CHHHHHHH
T ss_conf 89969955674899999999999998689998857999845898999999999856988588970238----68899984
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 66531899974467
Q gi|254781176|r 177 NDKTTFADAFSMAD 190 (502)
Q Consensus 177 ~~~~~~~~af~~~d 190 (502)
+..-+..++++...
T Consensus 145 gR~h~~~~~~~ai~ 158 (399)
T PRK07379 145 GRSHRVKDIYQAVA 158 (399)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 89999999999999
No 432
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=33.72 E-value=28 Score=13.95 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 888838999999972999999726998999980367666740789999999864984999
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG 133 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~ 133 (502)
.+++|+.+..+|. +++..-++.+|+ |+.+|+.+-.++.++.+.+++.+.
T Consensus 48 d~~~p~~a~~~a~-------~Lv~~d~V~~ii----G~~~S~~~~a~~~~~~~~~~~~i~ 96 (334)
T cd06356 48 TQSDNERYQQYAQ-------RLALQDKVDVVW----GGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred CCCCHHHHHHHHH-------HHHHCCCCEEEE----CCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 9999899999999-------999618970675----576527778742678984963784
No 433
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=33.72 E-value=28 Score=13.95 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=5.4
Q ss_pred HHHHHCCCEEEEEE
Q ss_conf 99986498499995
Q gi|254781176|r 122 KIARNKGVLTVGVV 135 (502)
Q Consensus 122 ~~a~~~~~~~~~~v 135 (502)
-.||++|--+.++|
T Consensus 22 g~Ar~Lg~~v~avv 35 (312)
T PRK11916 22 GGAQQWGQQVYAIV 35 (312)
T ss_pred HHHHHHCCEEEEEE
T ss_conf 99987388279999
No 434
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.48 E-value=29 Score=13.92 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=55.4
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHCCCCEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 386179999668147999999985899844999825-57885518997048515-5425567888883899999997299
Q gi|254781176|r 13 LKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANT-DAQALMMSKAKQIIQLG-SGITEGLGAGSHPEVGRAAAEECID 90 (502)
Q Consensus 13 ~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt-d~~~l~~~~~~~~~~~g-~~~~~g~g~g~~~~~g~~~a~~~~~ 90 (502)
-++||.|+|-|.-|.-.-..+-+.+ ..|. ++-+. ....++......|.+-+ ..+...+=+- .
T Consensus 5 k~~KI~ViGaGawGTALA~~la~n~-~~v~-w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t--------------~ 68 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVASICARRG-PTLQ-WVRSEETAKDINDNHRNSRYLGNDVVLSDTLRAT--------------T 68 (340)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE--------------C
T ss_conf 8992899896999999999999589-9899-9689999999998288876899875589872897--------------8
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHH
Q ss_conf 999972699899998036766674078999999986498-4999950430004067888
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGV-LTVGVVTKPFHFEGSRRMR 148 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~-~~~~~v~~pf~~eg~~r~~ 148 (502)
.+.++++++|+||+..=. .+.-.++.++.+...- ..+-.+++=|.....+|+.
T Consensus 69 dl~~a~~~adiii~avPS-----~~~r~~~~~l~~~l~~~~~iv~~sKGie~~t~~~~s 122 (340)
T PRK12439 69 DFTEAANCADVVVMGVPS-----HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMS 122 (340)
T ss_pred CHHHHHHCCCEEEEECCC-----HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH
T ss_conf 999998269989993680-----899999999986557887599732750279998799
No 435
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=33.35 E-value=29 Score=13.90 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 5537899961688889999999999999741688639998531
Q gi|254781176|r 260 GSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATF 302 (502)
Q Consensus 260 ~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~~ 302 (502)
.-.|+-|||+.||.-|-.| .+..+|.||||+..
T Consensus 44 ektg~kVnvt~GPq~tW~~----------kAkknADilfgase 76 (252)
T COG4588 44 EKTGIKVNVTAGPQATWNE----------KAKKNADILFGASE 76 (252)
T ss_pred HHHCEEEEEECCCCCHHHH----------HHHCCCCEEECCCH
T ss_conf 8748079994188610445----------64136745641648
No 436
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.25 E-value=14 Score=16.32 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9996168888999999999999974
Q gi|254781176|r 265 LISITGGSDLTLFEVDEAATRIREE 289 (502)
Q Consensus 265 l~~i~~~~~~~l~e~~~~~~~i~~~ 289 (502)
.|||--|.-+++.++-.++++|.+.
T Consensus 124 pV~iKkgq~~s~~~~~~a~eki~~~ 148 (250)
T PRK13397 124 PILFKRGLMATIEEYLGALSYLQDT 148 (250)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 0897887779999999999999965
No 437
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=33.23 E-value=18 Score=15.39 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=15.4
Q ss_pred HHHHCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 87641586589987614862048999988
Q gi|254781176|r 218 RSVMRNMGRAMMGTGEASGHGRGIQAAEA 246 (502)
Q Consensus 218 ~~v~~~~g~a~~g~g~~~g~~r~~~a~~~ 246 (502)
...|+.+|.+++|+-... ..|.+|.+.
T Consensus 240 ~~~mSGSGst~Falf~~~--~~A~~~~~~ 266 (281)
T PRK00128 240 GALMSGSGPTVFGLFDDE--SRAQRIYNG 266 (281)
T ss_pred EEEEECCCCEEEEEECCH--HHHHHHHHH
T ss_conf 589877212189998999--999999998
No 438
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=32.75 E-value=29 Score=13.84 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 86179999668147999999985899844999825578855
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALM 54 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~ 54 (502)
+-||-+||+|--|..+...+......++++.++.-+...+.
T Consensus 2 ~~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~~~~~~ 42 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP 42 (267)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHH
T ss_conf 51799985169999999998617776528999815335555
No 439
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.50 E-value=30 Score=13.81 Aligned_cols=82 Identities=23% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE-----------------------EEECC
Q ss_conf 9999972999999726998999980367666740789999999864984999-----------------------95043
Q gi|254781176|r 82 RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVG-----------------------VVTKP 138 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~-----------------------~v~~p 138 (502)
|.--++..+.|.+..++.|++|+++|=.=..-|-+.-.+ -||+.|+-|-- .||+|
T Consensus 59 R~dlE~~~~~il~~a~~~~Vall~~GDpmvATTH~~L~~--~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip 136 (260)
T COG1798 59 REDLEENSRSILDRAKDKDVALLVAGDPMVATTHVDLRI--EAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLP 136 (260)
T ss_pred HHHHHHCCHHHHHHHHCCCEEEEECCCCCEEHHHHHHHH--HHHHCCCCEEEECCCHHHHHHHHHHHHHEECCCCCEEEC
T ss_conf 888763414677787328879993598630011899999--999769827997461899988645242013248946962
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000406788889999999998633354
Q gi|254781176|r 139 FHFEGSRRMRVAESGIEALQETVDTLI 165 (502)
Q Consensus 139 f~~eg~~r~~~a~~~~~~l~~~~d~~i 165 (502)
|-+++-.-..-...=-+.++.-.+|++
T Consensus 137 ~~~~~~~p~s~yd~Ik~N~~~GLHTl~ 163 (260)
T COG1798 137 FPSENFFPTSPYDVIKENLERGLHTLV 163 (260)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 423686778588899876645864048
No 440
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=32.27 E-value=23 Score=14.69 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHH------HHHHC--CCCEEEEEECCCCCCCCCHH
Q ss_conf 888389999999729999------99726--99899998036766674078
Q gi|254781176|r 75 GSHPEVGRAAAEECIDEI------TEMLD--KTHMCFVTAGMGGGTGTGAA 117 (502)
Q Consensus 75 g~~~~~g~~~a~~~~~~i------~~~~~--~~~~~~~~ag~gggtgtg~~ 117 (502)
-|.|++-|++.......- ...+. =-+|-||+|-||||+--||-
T Consensus 143 SG~p~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV~ah 193 (358)
T COG3426 143 SGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISVGAH 193 (358)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCEEEEEE
T ss_conf 689662057788886278999999998522545533788860684378871
No 441
>KOG2666 consensus
Probab=32.20 E-value=30 Score=13.77 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=58.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH---HHHHHH
Q ss_conf 61799996681479999999858998449998255788551899704851554255678888838999999---972999
Q gi|254781176|r 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA---EECIDE 91 (502)
Q Consensus 15 ~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a---~~~~~~ 91 (502)
.||+-||-|=.|+-+..-|- ..-..++...++-.....+.-..+ |+-|=.. | --++-++|- .-..-.
T Consensus 2 ~KicCiGAGYVGGPT~aviA-lkCP~i~vtvVD~s~~rInaWNSd-~LPIYEP---G-----LdevVk~cRgkNLFFStd 71 (481)
T KOG2666 2 VKICCIGAGYVGGPTCAVIA-LKCPDIEVTVVDISVPRINAWNSD-KLPIYEP---G-----LDEVVKQCRGKNLFFSTD 71 (481)
T ss_pred CEEEEECCCCCCCCHHHHHH-HCCCCEEEEEEECCCHHHHHCCCC-CCCCCCC---C-----HHHHHHHHCCCCEEEECC
T ss_conf 35999567766883064431-038954899986683776501688-8865687---7-----799999834875155156
Q ss_pred HHHHHCCCCEEEE-------EECCCCCCCC------CHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9997269989999-------8036766674------078999999986498499995043
Q gi|254781176|r 92 ITEMLDKTHMCFV-------TAGMGGGTGT------GAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 92 i~~~~~~~~~~~~-------~ag~gggtgt------g~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
|.+++..+|+||| |-|||.|... .||-.||.++..-. ++|---|.|
T Consensus 72 iek~i~EaDlvFiSVNTPTKt~G~G~G~AaDL~Y~EsaaRmIa~~s~s~K-IVvEKSTVP 130 (481)
T KOG2666 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDK-IVVEKSTVP 130 (481)
T ss_pred HHHHHHHCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCC
T ss_conf 68776542569999379742226887765421689999999998717981-799625655
No 442
>PRK05713 hypothetical protein; Provisional
Probab=32.13 E-value=30 Score=13.77 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=21.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEEEECCCC
Q ss_conf 7899961688889999999999-9997416886399985313465
Q gi|254781176|r 263 GLLISITGGSDLTLFEVDEAAT-RIREEVDSEANIILGATFDEAL 306 (502)
Q Consensus 263 ~~l~~i~~~~~~~l~e~~~~~~-~i~~~~~~~a~ii~G~~~d~~~ 306 (502)
+=||.|.||.-++-.- .+.. .+.........++||++...++
T Consensus 193 rplvliAgGTGiAPi~--Sml~~~l~~~~~~~v~l~~g~R~~~dl 235 (312)
T PRK05713 193 RPLWLLAAGTGLAPLW--GILREALRQGHQGPIRLLHLARDSAGH 235 (312)
T ss_pred CCEEEEECCCCHHHHH--HHHHHHHHCCCCCCEEEEEEECCHHHH
T ss_conf 8779997376536789--999999970999988999996887992
No 443
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=31.97 E-value=30 Score=13.75 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=38.6
Q ss_pred EECCCHHHHHHCCCCEEE--EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH--H
Q ss_conf 982557885518997048--515542556788888389999999729999997269989999803676667407899--9
Q gi|254781176|r 45 VANTDAQALMMSKAKQII--QLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPI--I 120 (502)
Q Consensus 45 ~~ntd~~~l~~~~~~~~~--~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~--i 120 (502)
++-.=.+.|...+.-..| .+|+ ||.|-..+ +..+++ ++|| |.|.||. +
T Consensus 65 vvG~gT~~L~~l~~Gd~i~~i~GP-----lG~~f~~~-----------------~~~~~l-lVgG-----GiGiAPl~~l 116 (281)
T PRK06222 65 AVGKSTKELAELKEGDSILDVVGP-----LGKPSEIE-----------------KFGTVV-CVGG-----GVGIAPVYPI 116 (281)
T ss_pred EECHHHHHHHHCCCCCEEEEEECC-----CCCCCCCC-----------------CCCEEE-EECC-----CCCCCCHHHH
T ss_conf 988589999717799998367837-----98870456-----------------785399-9958-----4331227999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999864984999950430004067888899999999986333545
Q gi|254781176|r 121 AKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIV 166 (502)
Q Consensus 121 a~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~ 166 (502)
|+..++.|.-+..+. |. |.....-..+++++.+|.+++
T Consensus 117 ak~l~~~g~~v~~~~-------G~-r~~~~l~~~~~~~~~~~~~~v 154 (281)
T PRK06222 117 AKALKEAGNKVITII-------GA-RNKDLLILEDEMKAVSDELYV 154 (281)
T ss_pred HHHHHHCCCCEEEEE-------CC-CCHHHEEHHHHHHHHCCEEEE
T ss_conf 999997499169997-------56-976870119999973791899
No 444
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=31.97 E-value=26 Score=14.20 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=9.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHC
Q ss_conf 367666740789999999864
Q gi|254781176|r 107 GMGGGTGTGAAPIIAKIARNK 127 (502)
Q Consensus 107 g~gggtgtg~~p~ia~~a~~~ 127 (502)
|..||.|+|=+-+..+++..+
T Consensus 3 gIaG~SgSGKTT~a~~L~~~l 23 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998989778999999999998
No 445
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.89 E-value=15 Score=15.96 Aligned_cols=36 Identities=33% Similarity=0.660 Sum_probs=17.5
Q ss_pred HHHHHHHCCC-EEE-EEE---ECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999986498-499-995---0430004067888899999999986
Q gi|254781176|r 120 IAKIARNKGV-LTV-GVV---TKPFHFEGSRRMRVAESGIEALQET 160 (502)
Q Consensus 120 ia~~a~~~~~-~~~-~~v---~~pf~~eg~~r~~~a~~~~~~l~~~ 160 (502)
+|+..|+.|+ +.. ++- |.|-+|+|.. .+||+-|++.
T Consensus 46 ~A~~lk~~g~~~~r~~~fK~RTs~~sfrG~G-----~egL~~L~~v 86 (266)
T PRK13398 46 VAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-----EEGLKILKEV 86 (266)
T ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCC-----HHHHHHHHHH
T ss_conf 9999998333433375415899985556885-----8899999999
No 446
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=31.82 E-value=30 Score=13.73 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=33.8
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 79999668147999999985899844999825578855189--9704851554255678888838999999972999999
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSK--AKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITE 94 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~--~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~ 94 (502)
|.+||+|=++-.-+.---..-++..+.|+.. ...|.... ...++.++.. ..+..+.|.+
T Consensus 2 v~iVG~GPG~p~llT~~a~~~l~~advi~g~--~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~ 62 (207)
T PRK05787 2 IYVVGIGPGDPDYLTLKALEAIRKADVVYGS--KRVLELFPDLGGEVVTLGRD-----------------LGAELREIAE 62 (207)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCEEEEC--HHHHHHHHHHCCCEEECCCC-----------------HHHHHHHHHH
T ss_conf 8999979999066589999999739999988--89986415517957634899-----------------9999999999
Q ss_pred HHCCCCEEEEEECC
Q ss_conf 72699899998036
Q gi|254781176|r 95 MLDKTHMCFVTAGM 108 (502)
Q Consensus 95 ~~~~~~~~~~~ag~ 108 (502)
..++-++|++..|-
T Consensus 63 ~~~g~~Vv~L~sGD 76 (207)
T PRK05787 63 RALGKNVVVLSTGD 76 (207)
T ss_pred HHCCCCEEEEECCC
T ss_conf 85899679996899
No 447
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=31.77 E-value=30 Score=13.73 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHCCCCEE--EEEEEECC-CCCHHHHHHHHHHHCCCC
Q ss_conf 878764158658--99876148-620489999887527010
Q gi|254781176|r 216 DVRSVMRNMGRA--MMGTGEAS-GHGRGIQAAEAAVANPLL 253 (502)
Q Consensus 216 d~~~v~~~~g~a--~~g~g~~~-g~~r~~~a~~~a~~~pll 253 (502)
.+...|.++-+- +.|.|... +-.....+.-..+.-|.+
T Consensus 189 ~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~l~~PV~ 229 (521)
T PRK07092 189 ALGDALDAARNPALVVGPAVDRAGAWDDAVRLAERHRAPVW 229 (521)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 99999972899789987670403549999999998699778
No 448
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=31.75 E-value=30 Score=13.72 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 999744679999998888876516655558987878764158
Q gi|254781176|r 183 ADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNM 224 (502)
Q Consensus 183 ~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~ 224 (502)
.-+|++||+ .|+-=||+.|+|+++...
T Consensus 133 ~~~F~~ADd---------------~gLlLlDLkDLra~l~~v 159 (504)
T pfam05872 133 NIAFRIADD---------------KGLLLLDLKDLRAILKYV 159 (504)
T ss_pred HHHHHHHCC---------------CCCCCCCHHHHHHHHHHH
T ss_conf 988875455---------------998023489999999998
No 449
>PRK08198 threonine dehydratase; Provisional
Probab=31.69 E-value=31 Score=13.72 Aligned_cols=51 Identities=31% Similarity=0.419 Sum_probs=27.7
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 9999726998999980367666740789999999864--984999950430004067888899
Q gi|254781176|r 91 EITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSRRMRVAE 151 (502)
Q Consensus 91 ~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~r~~~a~ 151 (502)
||.+-+.+.|.||+-.|- ||.-+|.+-++ |.+ ++-++||- | ||.--|..+.
T Consensus 165 Eileq~p~~D~vvvpvGG-GGLiaGia~a~----K~~~P~ikViGVE--p---e~a~~~~~Sl 217 (406)
T PRK08198 165 EILEDLPDVDTVVVPIGG-GGLISGVATAV----KALRPNVRVIGVQ--A---EGAPAMPLSL 217 (406)
T ss_pred HHHHHCCCCCEEEECCCC-HHHHHHHHHHH----HHHCCCCCEEEEE--E---CCCHHHHHHH
T ss_conf 999867777878863786-26889999999----9868997089996--5---7876899999
No 450
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=31.58 E-value=31 Score=13.70 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 674078999999986498499995043
Q gi|254781176|r 112 TGTGAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 112 tgtg~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
-||=..|.-.-+....|+-.|-|.-+|
T Consensus 143 ~G~~i~~~~i~lLas~Gi~~V~V~~~p 169 (394)
T cd00887 143 AGTRLTPADIGLLASLGIAEVPVYRRP 169 (394)
T ss_pred CCCEECHHHHHHHHHCCCCEEEEECCE
T ss_conf 897966999999997699805996013
No 451
>PHA02518 ParA-like protein; Provisional
Probab=31.51 E-value=31 Score=13.69 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 68147999999985--899844999825578855189970485155425567888883899999-997299999972699
Q gi|254781176|r 23 GGGGGNAVNNMVSS--GLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAA-AEECIDEITEMLDKT 99 (502)
Q Consensus 23 gg~g~n~~~~~~~~--~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~-a~~~~~~i~~~~~~~ 99 (502)
||+|=-++-.-+-. ..+|-....+++|-|.=...-...+ ..+.|-+.-.. ...-...+.+...+.
T Consensus 10 GGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r------------~~~~~~~~~~~~~~~~~~~l~~~~~~y 77 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAR------------EEGEPLIPVVRMGKSIRADLPKVASGY 77 (211)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHC------------CCCCCCCCHHHCCHHHHHHHHHHCCCC
T ss_conf 99749999999999999789948999779996788999852------------268997401213677999999740678
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999980367666740789999999864984999950430004067888899999999
Q gi|254781176|r 100 HMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEAL 157 (502)
Q Consensus 100 ~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l 157 (502)
|.|+|=+ ++. ..+....+..-.+.+.|-+-.-||.++|-.++........++
T Consensus 78 D~viID~--pp~----~~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~ 129 (211)
T PHA02518 78 DYVVVDG--APQ----DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV 129 (211)
T ss_pred CEEEECC--CCC----CHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899889--997----429999999958969996378687899999999999999986
No 452
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=31.41 E-value=31 Score=13.68 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=36.0
Q ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 269989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 96 LDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 96 ~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
++.-|+|++.. ..|-| --.--.++.||+.|+.+|++...|-+ .|-+.+|-.|.++..
T Consensus 51 ~~~~d~vi~iS-~sG~t--~~~~~~~~~a~~~g~~~i~iT~~~~S---------------~la~~ad~~l~~~~~ 107 (131)
T pfam01380 51 VDPDDLVIAIS-QSGET--RDLLEAAKLLKARGAKIIAITDSKGS---------------PLAREADHVLYIIAG 107 (131)
T ss_pred CCCCCEEEEEC-CCCCC--HHHHHHHHHHHHCCCEEEEEECCCCC---------------HHHHHCCEEEECCCC
T ss_conf 99999999954-89865--76898789999849969999899999---------------789968998987998
No 453
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=31.41 E-value=31 Score=13.68 Aligned_cols=106 Identities=22% Similarity=0.352 Sum_probs=65.6
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 17999966814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
|+.|||+|-+...-+.-.-+.-+..+++|.-.+--..|-. .-+.|..+....+ -|+.| ....|..+
T Consensus 4 ~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~d~i~-l~~~k~v~~s~m~--------~Ei~R-----a~~AielA 69 (249)
T COG1010 4 KLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYLDLIE-LRPGKEVIRSGMR--------EEIER-----AKEAIELA 69 (249)
T ss_pred EEEEEEECCCCHHHCCHHHHHHHHHCCEEEECHHHHHHHH-CCCCCEEEECCCH--------HHHHH-----HHHHHHHH
T ss_conf 6999985799825479999999974888996387877875-1799779958857--------58999-----99999998
Q ss_pred HCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 2699899998036766674-078999999986498499995043
Q gi|254781176|r 96 LDKTHMCFVTAGMGGGTGT-GAAPIIAKIARNKGVLTVGVVTKP 138 (502)
Q Consensus 96 ~~~~~~~~~~ag~gggtgt-g~~p~ia~~a~~~~~~~~~~v~~p 138 (502)
..|.++..|.. |-.|- |-|..+-+++.+.|-..|-|-..|
T Consensus 70 ~~G~~ValVSs---GDpgVYgMA~lv~E~~~~~~~~~v~veVvP 110 (249)
T COG1010 70 AEGRDVALVSS---GDPGVYGMAGLVLEAAEEEGWYDVDVEVVP 110 (249)
T ss_pred HCCCEEEEEEC---CCCCHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 45885999827---995388869999999986187776379807
No 454
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=31.39 E-value=31 Score=13.68 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=7.7
Q ss_pred EEEECCCCCCCCC
Q ss_conf 9851355320000
Q gi|254781176|r 314 VVATGIENRLHRD 326 (502)
Q Consensus 314 ~iatg~d~~~~~~ 326 (502)
-||-|+-+..|+.
T Consensus 255 YIA~GISGAiQHl 267 (313)
T COG2025 255 YIALGISGAIQHL 267 (313)
T ss_pred EEEEECCCHHHHH
T ss_conf 9998036579887
No 455
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=31.38 E-value=30 Score=13.82 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 6204899998875270
Q gi|254781176|r 236 GHGRGIQAAEAAVANP 251 (502)
Q Consensus 236 g~~r~~~a~~~a~~~p 251 (502)
||.+=.+-.+.++=.|
T Consensus 151 GEKKrnEILQm~~L~P 166 (248)
T TIGR01978 151 GEKKRNEILQMALLEP 166 (248)
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 7115768998875199
No 456
>PRK11020 hypothetical protein; Provisional
Probab=31.33 E-value=19 Score=15.29 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=26.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 999504300040678888999999999863335450-2788874
Q gi|254781176|r 132 VGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI-PNQNLFR 174 (502)
Q Consensus 132 ~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i-~n~~l~~ 174 (502)
-.+..|||+-+= -+..||..| .|++.|-.++|+ |--.|-.
T Consensus 63 ~~l~~lpF~R~i-TK~EQADMG--kLKKsVrGLVVVHPMTaLGR 103 (118)
T PRK11020 63 QKLMKLPFSRAI-TKKEQADMG--KLKKSVRGLVVVHPMTALGR 103 (118)
T ss_pred HHHHCCCCCHHH-HHHHHHHHH--HHHHHCCCEEEEECHHHHHH
T ss_conf 998738731120-188887688--88763121257505388878
No 457
>pfam10928 DUF2810 Protein of unknown function (DUF2810). This is a bacterial family of uncharacterized proteins.
Probab=31.33 E-value=23 Score=14.69 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=25.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 9504300040678888999999999863335450-2788874
Q gi|254781176|r 134 VVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI-PNQNLFR 174 (502)
Q Consensus 134 ~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i-~n~~l~~ 174 (502)
+-.+||+-+= .+..||..| +|++.|-.+||+ |--.|-.
T Consensus 2 l~~lpF~R~i-TK~EQADmG--kLKKsvrGLvvVHPmTalGr 40 (54)
T pfam10928 2 LKDLPFSRAL-TKAEQADMG--KLKKSVKGLVVVHPMTALGR 40 (54)
T ss_pred CCCCCCCHHH-HHHHHHHHH--HHHHHCEEEEEEECHHHHHH
T ss_conf 3337520132-278887688--78765000489715478878
No 458
>PRK11579 putative oxidoreductase; Provisional
Probab=31.05 E-value=31 Score=13.64 Aligned_cols=135 Identities=19% Similarity=0.321 Sum_probs=69.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEE-CCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 861799996681479999999858998449998-2557885518997048515542556788888389999999729999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVA-NTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~-ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
|.|+-|||+|..|.+.--..+ ....+++++++ +.|...+. +. . .|.-.- ...
T Consensus 4 ~irvgiiG~G~~~~~~h~~~~-~~~~~~~l~av~d~~~~~~~---a~---~------~~~~~~--------------~~~ 56 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLI-AGTPGLELAAVSSSDETKVK---AD---W------PTVTVV--------------SEP 56 (346)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCHHHHH---CC---C------CCCCEE--------------CCH
T ss_conf 875999936299999999999-62999199999798999995---02---5------899538--------------999
Q ss_pred HHHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99726--9989999803676667407899999998649849999504300040678888999999999863335450278
Q gi|254781176|r 93 TEMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQ 170 (502)
Q Consensus 93 ~~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i~n~ 170 (502)
.++|. +.|.|+|+ |=+..-.-++..|=+.|.-+ +|-+|+..- ...|++ |.++-+....++.+.-+
T Consensus 57 ~~ll~~~~id~V~i~------tp~~~H~~~~~~al~aGkhv--~~EKP~a~~----~~~a~~-l~~~a~~~g~~l~v~~~ 123 (346)
T PRK11579 57 KHLFNDPNIDLIVIP------TPNDTHFPLAKAALEAGKHV--VVDKPFTVT----LSQARE-LDALAKSLGRVLSVFHN 123 (346)
T ss_pred HHHHCCCCCCEEEEC------CCCHHHHHHHHHHHHCCCCE--EECCCCCCC----HHHHHH-HHHHHHHCCCEEEEEEE
T ss_conf 999459999999997------99678999999999879948--953876787----999999-99999872967999655
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 887413665318999744679999998
Q gi|254781176|r 171 NLFRIANDKTTFADAFSMADQVLYSGV 197 (502)
Q Consensus 171 ~l~~~~~~~~~~~~af~~~d~~l~~~v 197 (502)
.-|.-+|..+-++|..+.
T Consensus 124 ---------~R~~~~~~~~~~~i~~G~ 141 (346)
T PRK11579 124 ---------RRWDSDFLTLKGLLAEGV 141 (346)
T ss_pred ---------ECCCHHHHHHHHHHHCCC
T ss_conf ---------318989999877875799
No 459
>TIGR00770 Dcu transporter, anaerobic C4-dicarboxylate uptake (Dcu) family; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm . The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species , , , and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively . The Escherichia coli DcuA and DcuB proteins have very different expression patterns . DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane.
Probab=31.01 E-value=29 Score=13.90 Aligned_cols=19 Identities=42% Similarity=0.934 Sum_probs=14.0
Q ss_pred CCCC---CHHHHHHHHHHHCCC
Q ss_conf 6674---078999999986498
Q gi|254781176|r 111 GTGT---GAAPIIAKIARNKGV 129 (502)
Q Consensus 111 gtgt---g~~p~ia~~a~~~~~ 129 (502)
|||- ---|||++.||+.|+
T Consensus 100 GTGHv~ys~LPVI~eVa~~qgi 121 (447)
T TIGR00770 100 GTGHVVYSVLPVIAEVAKEQGI 121 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 3036657887788877774679
No 460
>PRK13435 response regulator; Provisional
Probab=30.86 E-value=28 Score=14.00 Aligned_cols=90 Identities=21% Similarity=0.356 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCCCCEEE-EECCCHHHHHH--CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999998589984499-98255788551--8997048515542556788888389999999729999997269989999
Q gi|254781176|r 28 NAVNNMVSSGLQGVNFV-VANTDAQALMM--SKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFV 104 (502)
Q Consensus 28 n~~~~~~~~~~~~~~~~-~~ntd~~~l~~--~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~ 104 (502)
..+.++.+. .|.+.+ .+.+-.++|.. ..-+.-+++.-.+..|+. -.++.| +|+. ..+.-++|+
T Consensus 15 ~~l~~~L~~--~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~---G~e~~r--------~l~~-~~~ipvI~l 80 (141)
T PRK13435 15 LELEKLLEE--AGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPT---GVEVAR--------RLSI-DGGVEVIFM 80 (141)
T ss_pred HHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCC---HHHHHH--------HHHH-CCCCCEEEE
T ss_conf 999999998--79979997599999999976599989997887899998---999999--------9987-599838999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf 8036766674078999999986498499995043000406
Q gi|254781176|r 105 TAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGS 144 (502)
Q Consensus 105 ~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~ 144 (502)
||- +-.+ ..+ ..|+ ..++++||+.+--
T Consensus 81 Ta~---------~d~~-~~~-~aGA--~dyl~KPf~~~eL 107 (141)
T PRK13435 81 TAN---------PERV-GHD-FAGA--LGVIAKPYSLRQV 107 (141)
T ss_pred ECC---------HHHH-HHH-HCCC--CCEEECCCCHHHH
T ss_conf 777---------9986-013-4599--8589899998999
No 461
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=30.67 E-value=32 Score=13.60 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=66.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8617999966814799999998589-984499982557885518997048515542556788888389999999729999
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGL-QGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEI 92 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~-~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i 92 (502)
|.|+.|||-|.-|...+-++.+... .-+-|+.+|-++.-|.+-.. +|...+. +..+-+
T Consensus 1 k~~vAIiGsGnIGtDLm~Ki~rS~~le~~~~vG~dp~S~GL~rA~~-----lGv~~s~----------------~Gid~l 59 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE-----LGVKTSA----------------EGVDGL 59 (285)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-----CCCCCCC----------------CCHHHH
T ss_conf 9369998998338999999866787216999824889828999998-----4996637----------------688989
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 997269989999803676667407899999998649849999
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
.+. .+.|+||= -|.-++-..-+++-++.|++.|-.
T Consensus 60 l~~-~~idiVFD------ATSA~aH~~h~~~l~~~g~~~IDL 94 (285)
T TIGR03215 60 LAN-PDIDIVFD------ATSAKAHARHARLLAELGKIVIDL 94 (285)
T ss_pred HHC-CCCCEEEE------CCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 609-99788996------698467999999999759979978
No 462
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.61 E-value=32 Score=13.59 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999999864984999
Q gi|254781176|r 118 PIIAKIARNKGVLTVG 133 (502)
Q Consensus 118 p~ia~~a~~~~~~~~~ 133 (502)
+-|+++||+.|+++|.
T Consensus 166 ~~i~~iA~~~g~~~vV 181 (391)
T PRK08133 166 AALAEIAHAAGALLVV 181 (391)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999998755875998
No 463
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=30.58 E-value=32 Score=13.59 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=5.1
Q ss_pred CCCCCEEEEEE
Q ss_conf 45553789996
Q gi|254781176|r 258 MKGSQGLLISI 268 (502)
Q Consensus 258 ~~~a~~~l~~i 268 (502)
+..||+|||||
T Consensus 271 ~~~~RKVLiHI 281 (314)
T TIGR02108 271 LEIARKVLIHI 281 (314)
T ss_pred CCCCCEEEEEE
T ss_conf 89887789862
No 464
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=30.48 E-value=32 Score=13.57 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=14.7
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 8999980367666740789999999864984
Q gi|254781176|r 100 HMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130 (502)
Q Consensus 100 ~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~ 130 (502)
..++++.|.+++.+.--+-+.++++.++|+-
T Consensus 32 ~~ii~sGg~~~~~~~~ea~~~~~~l~~~gvp 62 (148)
T pfam02698 32 PRIIVSGGAGGGEPVSEAEVMRRYLVELGVP 62 (148)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 8899848988888878999999999986989
No 465
>PRK05414 urocanate hydratase; Provisional
Probab=30.43 E-value=32 Score=13.57 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 98999980367666740789999999864984999950430004
Q gi|254781176|r 99 THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFE 142 (502)
Q Consensus 99 ~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~e 142 (502)
+..+|+||||||=- ||-|--+.+| |...+++=.-|-..+
T Consensus 166 ~Gk~~vTaGLGGMg--GAQplA~~ma---g~v~i~~Evd~~ri~ 204 (558)
T PRK05414 166 AGRLILTAGLGGMG--GAQPLAATMA---GAVCLAVEVDESRID 204 (558)
T ss_pred CCCEEEECCCCCCC--CCCHHHHHHC---CCEEEEEEECHHHHH
T ss_conf 77189841777665--4335678752---762899983899999
No 466
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=30.42 E-value=32 Score=13.57 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8883899999997299999972699899998036766674078999999986498499995
Q gi|254781176|r 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 75 g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
+++|+.+..+|++-. . ++.++++ |+.+|+.+-.++.++.+.+++.+..-
T Consensus 49 ~~~p~~a~~~a~~li----~--~~v~aii------G~~~s~~~~a~~~~~~~~~vp~is~~ 97 (334)
T cd06342 49 QADPKQAVAVAQKLV----D--DGVVGVV------GHLNSGVTIPASPIYADAGIVMISPA 97 (334)
T ss_pred CCCHHHHHHHHHHHH----H--CCCCEEE------CCCCHHHHHHHHHHHHHHCCEEECCC
T ss_conf 999899999999999----7--6984886------46647878875578997397030357
No 467
>KOG4498 consensus
Probab=30.39 E-value=32 Score=13.57 Aligned_cols=34 Identities=18% Similarity=0.497 Sum_probs=21.4
Q ss_pred HHHCCCCC-----CCCHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 65166555-----58987878764158658998761486
Q gi|254781176|r 203 LMIKEGLI-----NLDFADVRSVMRNMGRAMMGTGEASG 236 (502)
Q Consensus 203 ~i~~~g~i-----n~df~d~~~v~~~~g~a~~g~g~~~g 236 (502)
-+.+||-+ --||++++.+|...|..++++|.++-
T Consensus 57 ~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~ 95 (197)
T KOG4498 57 FVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSH 95 (197)
T ss_pred EECCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCE
T ss_conf 852576877278888788788899873977999804410
No 468
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.36 E-value=32 Score=13.56 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=42.6
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHC---CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 65899876148620489999887527---010002245553789996168888999999999999974168863999853
Q gi|254781176|r 225 GRAMMGTGEASGHGRGIQAAEAAVAN---PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGAT 301 (502)
Q Consensus 225 g~a~~g~g~~~g~~r~~~a~~~a~~~---pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~G~~ 301 (502)
-.|++|.|=|- ..-|-..|..- -.++. ..-+-|+|..-.-...+.-.-|+.-.+.|.+ ...++.++..
T Consensus 312 KVAVIGsGPAG----LaaA~~Lar~G~~VTVfE~--~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~---lGV~f~~n~~ 382 (639)
T PRK12809 312 KVAVIGAGPAG----LGCADILARAGVQVDVFDR--HPEIGGMLTFGIPPFKLDKTVLSQRREIFTA---MGIDFHLNCE 382 (639)
T ss_pred EEEEECCCHHH----HHHHHHHHHCCCCEEEEEC--CCCCCCEEEECCCCCCCCHHHHHHHHHHHHH---CCCEEEECCE
T ss_conf 89998975899----9999999975990699936--8888986853587452777899999999986---4988991967
Q ss_pred EC-----CCCCCEEEEEEEEECCC
Q ss_conf 13-----46575479999851355
Q gi|254781176|r 302 FD-----EALEGVIRVSVVATGIE 320 (502)
Q Consensus 302 ~d-----~~~~~~~~v~~iatg~d 320 (502)
+. ++|....--.+|+||..
T Consensus 383 VGkDit~~eL~~~yDAVflg~Ga~ 406 (639)
T PRK12809 383 IGRDITFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred ECCCCCHHHHHHHCCEEEEEECCC
T ss_conf 798688999973179899973678
No 469
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=30.31 E-value=32 Score=13.56 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=17.5
Q ss_pred HHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 516655558987878764158658998761486
Q gi|254781176|r 204 MIKEGLINLDFADVRSVMRNMGRAMMGTGEASG 236 (502)
Q Consensus 204 i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g 236 (502)
|...|-+.---..+..-|+.+|.-++=+|...+
T Consensus 148 Iii~~a~~~~P~~l~~qL~~gGrLV~Pig~~~~ 180 (213)
T PRK00312 148 ILVTAAAPEIPRALLDQLAEGGILVAPIGPGEE 180 (213)
T ss_pred EEEEECCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 999843412259999845329799999804998
No 470
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=30.21 E-value=32 Score=13.54 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=24.7
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9972699899998036766674078999999986498499995
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
.+.|++.|-|+|.-|+|- -|.-..-..++.||+.++-++|++
T Consensus 50 ~~~L~~~dgilvpgGFG~-rG~eGki~Ai~yARen~iPfLGIC 91 (235)
T cd01746 50 EEALKGADGILVPGGFGI-RGVEGKILAIKYARENNIPFLGIC 91 (235)
T ss_pred HHHHHCCCCEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999730697895788887-764588999999997399725441
No 471
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=30.16 E-value=29 Score=13.88 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=11.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6589987614862048999988752
Q gi|254781176|r 225 GRAMMGTGEASGHGRGIQAAEAAVA 249 (502)
Q Consensus 225 g~a~~g~g~~~g~~r~~~a~~~a~~ 249 (502)
..+-|-+|--|.+ |..|+-.|++
T Consensus 170 ~~~aMS~GAlS~e--A~~alA~a~~ 192 (485)
T COG0069 170 VTGAMSFGALSKE--AHEALARAMN 192 (485)
T ss_pred CCCCCCCCCCCHH--HHHHHHHHHH
T ss_conf 0256677645577--8899999999
No 472
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.08 E-value=32 Score=13.53 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 88883899999997299999972699899998036766674078999999986498499995
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
.+++|..+..+|.+-.++ ++.++|+ |..+|+.+-.++.++.+.+++.|+..
T Consensus 48 ~~~~p~~a~~~a~~Lv~~-----d~V~avi------G~~~S~~~~a~~~~~~~~~vp~is~~ 98 (334)
T cd06347 48 NKSDKEEAANAATRLIDQ-----DKVVAII------GPVTSGATLAAGPIAEDAKVPMITPS 98 (334)
T ss_pred CCCCHHHHHHHHHHHHHH-----CCCEEEE------CCCCHHHHHHHHHHHHHHCCEEEECC
T ss_conf 999989999999999975-----7977997------67856878988999997196487137
No 473
>PTZ00247 adenosine kinase; Provisional
Probab=30.07 E-value=32 Score=13.53 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=76.1
Q ss_pred CCEEEEEEECCCHHHHHHH---HHHCCCCCCEEE-EECCCH------HHHHHCCCCEEEEECCCC-C-------------
Q ss_conf 8617999966814799999---998589984499-982557------885518997048515542-5-------------
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNN---MVSSGLQGVNFV-VANTDA------QALMMSKAKQIIQLGSGI-T------------- 69 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~---~~~~~~~~~~~~-~~ntd~------~~l~~~~~~~~~~~g~~~-~------------- 69 (502)
+++++.+ -||+.+|++-- +....-..+-|+ .+-.|. ..|....+..+.+.-... |
T Consensus 54 ~~~~~~~-~GGSaaNTi~~~~~l~~~~~g~~~fiG~VG~D~~G~~~~~~l~~~GV~~~~~~~~~~~TG~c~vlvtd~eRT 132 (345)
T PTZ00247 54 IPNVSYV-PGGSALNTARVAQWMLQAPKGFVCYVGCVGKDRFAEILKEAAEKDGVEMLFEYTTKAPTGACAVLITGKERS 132 (345)
T ss_pred CCCCEEE-CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEECCCCE
T ss_conf 7880582-587899999999999746699679999958874089999999862984425546899970699999779954
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH
Q ss_conf --567888883899999997299999972699899998036766674078999999986498499995043000406788
Q gi|254781176|r 70 --EGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRM 147 (502)
Q Consensus 70 --~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~ 147 (502)
--|||...-.. .+-+.+.+.+.+++++++++..=+-- +...+..-++++||+.|..+.==..-||-.+- .
T Consensus 133 m~t~lGas~~l~~----~~i~~~~~~~~i~~a~~lyleGyll~-~~~~~~~~a~~~ak~~g~~val~lsd~~~v~~---~ 204 (345)
T PTZ00247 133 LVANLGAANHLSA----EHMQSHAVQEAIKNAQLYYLEGFFLT-TSPNNVLQVAKHARESGKLFCLNLSAPFISQF---F 204 (345)
T ss_pred EEECCCHHCCCCH----HHCCCHHHHHHHHHCEEEEEEEEEEC-CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHH---H
T ss_conf 8834321325897----88682666998842718998425503-79489999999999759959997783788998---8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999998633354502788
Q gi|254781176|r 148 RVAESGIEALQETVDTLIVIPNQN 171 (502)
Q Consensus 148 ~~a~~~~~~l~~~~d~~i~i~n~~ 171 (502)
.+.+.+|-+++| |++.|+-
T Consensus 205 ---~~~l~~ll~~vD--ilf~Ne~ 223 (345)
T PTZ00247 205 ---FERLLAVLPYVD--ILFGNEE 223 (345)
T ss_pred ---HHHHHHHHHHCC--EEEECHH
T ss_conf ---999999997488--8960799
No 474
>PRK05899 transketolase; Reviewed
Probab=30.04 E-value=32 Score=13.52 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHHHHHHHCCCCCCEEE
Q ss_conf 9999999974168863999
Q gi|254781176|r 280 DEAATRIREEVDSEANIIL 298 (502)
Q Consensus 280 ~~~~~~i~~~~~~~a~ii~ 298 (502)
+.+.+.||-.+=..++++|
T Consensus 437 ~ra~dqir~~al~~~~v~~ 455 (661)
T PRK05899 437 DYARNAIRLAALMKLPVIY 455 (661)
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9989999988760487499
No 475
>PRK08275 putative oxidoreductase; Provisional
Probab=29.87 E-value=33 Score=13.50 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCC--------HHH---HHHCCC----CEEEEECCCCCCC
Q ss_conf 7884543861799996681479999999858998449998255--------788---551899----7048515542556
Q gi|254781176|r 7 NMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTD--------AQA---LMMSKA----KQIIQLGSGITEG 71 (502)
Q Consensus 7 ~~~~~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd--------~~~---l~~~~~----~~~~~~g~~~~~g 71 (502)
.+|+++++--+.|||=|+||+-+-=...+.+. ++..+.+.-. +.+ +..... ....++ ..+.++
T Consensus 2 ~~~~~~i~tDVLVIGsG~AGl~AAi~a~~~~~-~~~V~li~K~~~~~sg~~~~~~~g~~~~~~~~~~~~e~~~-~dt~~a 79 (554)
T PRK08275 2 AMNTQEVETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYT-KEITIA 79 (554)
T ss_pred CCCCEEEECCEEEECCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
T ss_conf 87635887288999971999999999998689-8979999799989881799998888873468999999999-999985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----------ECCCC-----CCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 7888883899999997299999972699899998-----------03676-----6674078999999986498499
Q gi|254781176|r 72 LGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVT-----------AGMGG-----GTGTGAAPIIAKIARNKGVLTV 132 (502)
Q Consensus 72 ~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~-----------ag~gg-----gtgtg~~p~ia~~a~~~~~~~~ 132 (502)
-+--.||++-+.-++++.+.|..+.+ --+-|-- ..+|. .||....+++.+.+++.++.++
T Consensus 80 g~gl~d~~~v~~lv~~a~~~i~~L~~-~Gv~f~r~~~G~~~~~~~~~~~~~~~~~~~G~~i~~~l~~~~~~~~i~i~ 155 (554)
T PRK08275 80 NDGIVDQKAVYAYAEHSFETIQQLDR-WGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLIT 155 (554)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 38987799999999989999999997-69987738999860011036776432169869999999999986599699
No 476
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=29.81 E-value=33 Score=13.50 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=51.9
Q ss_pred CCCCCCCC--------HHHHHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCCHHHHHHHHHHHCCCEE---EEEE
Q ss_conf 56788888--------38999999972999999726998---9999803676667407899999998649849---9995
Q gi|254781176|r 70 EGLGAGSH--------PEVGRAAAEECIDEITEMLDKTH---MCFVTAGMGGGTGTGAAPIIAKIARNKGVLT---VGVV 135 (502)
Q Consensus 70 ~g~g~g~~--------~~~g~~~a~~~~~~i~~~~~~~~---~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~---~~~v 135 (502)
||||-..+ -=||...|.+...-|.++++.-. -.++.| |..|||-+-.---+||++|--| --.-
T Consensus 9 kGLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGraiLla---GppGTGKTAlA~aiakeLG~~vPF~~i~g 85 (395)
T pfam06068 9 RGLGLDEDGEARYVSEGLVGQEKAREAAGVIVEMIKEGKIAGRAVLIA---GPPGTGKTALAIAISKELGEDTPFCPISG 85 (395)
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 266869888883645775454999999899999997277577389987---79998889999999997487997345001
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0430004067888899999999986
Q gi|254781176|r 136 TKPFHFEGSRRMRVAESGIEALQET 160 (502)
Q Consensus 136 ~~pf~~eg~~r~~~a~~~~~~l~~~ 160 (502)
+-=|+.|-++ .+.=.+.+|+.
T Consensus 86 SEvyS~E~kK----TE~L~qafRrs 106 (395)
T pfam06068 86 SEVYSLEMKK----TEALTQAFRKA 106 (395)
T ss_pred HEEECCCCCH----HHHHHHHHHHH
T ss_conf 1121256548----89999999887
No 477
>PRK07586 hypothetical protein; Validated
Probab=29.61 E-value=33 Score=13.47 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=13.0
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9999668147999999985899844999825
Q gi|254781176|r 18 TVFGVGGGGGNAVNNMVSSGLQGVNFVVANT 48 (502)
Q Consensus 18 ~v~g~gg~g~n~~~~~~~~~~~~~~~~~~nt 48 (502)
.|||+=|..+.-+-.-+ ....+++||.+--
T Consensus 18 ~vFGvpG~~~~~l~~al-~~~~~i~~v~~rh 47 (514)
T PRK07586 18 VCFANPGTSEMHFVAAL-DRVPGMRCVLGLF 47 (514)
T ss_pred EEEECCCCCHHHHHHHH-HCCCCCEEECCCC
T ss_conf 89987887658999998-4579974973186
No 478
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=29.55 E-value=33 Score=13.47 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE---CCCCCCCH
Q ss_conf 5678888838999999972999999726--998999980367666740789999999864984999950---43000406
Q gi|254781176|r 70 EGLGAGSHPEVGRAAAEECIDEITEMLD--KTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVT---KPFHFEGS 144 (502)
Q Consensus 70 ~g~g~g~~~~~g~~~a~~~~~~i~~~~~--~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~---~pf~~eg~ 144 (502)
.||=.||---=.=---.+.+++|.+... .-|-+-++|-.|- -.+--+--+|+.|+++|--.|+-|| .||+||
T Consensus 37 DGLYVGGSTGE~F~~S~~E~~~~l~I~~~EAK~~I~LIA~VG~-V~~~E~~~L~~~A~~~GyD~~SAVTPFYY~FSF~-- 113 (294)
T TIGR00683 37 DGLYVGGSTGEAFVLSLEEKKEVLRIVKDEAKDKIKLIAQVGS-VSLKEAVELAKYAKRLGYDALSAVTPFYYKFSFE-- 113 (294)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCH--
T ss_conf 3157356315677531788999999998730250222101052-0378899999988873671112036666788736--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 78888999999999863335450278887413665318999744679999998888876516655558987878764158
Q gi|254781176|r 145 RRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNM 224 (502)
Q Consensus 145 ~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~ 224 (502)
+.+.|-|++|-=..-+=+=+| +.|+...-++. +.-|-+|.+.|+..-|
T Consensus 114 -----------E~~~~Y~~II~~~~G~~M~VY--~IP~L~GV~l~-------~~Q~~~L~~~P~V~~~------------ 161 (294)
T TIGR00683 114 -----------EIKDYYDAIIDEADGLNMVVY--SIPALSGVKLT-------LDQINELVKLPKVLAL------------ 161 (294)
T ss_pred -----------HHHHHHHHHHHHCCCCCEEEE--ECCCCCCHHHH-------HHHHHHHHHCCCCEEE------------
T ss_conf -----------777789999852489823787--45320121221-------8888887517872145------------
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCC----CC-------CCCCCCCEEEEEEECCCC
Q ss_conf 65899876148620489999887527010----00-------224555378999616888
Q gi|254781176|r 225 GRAMMGTGEASGHGRGIQAAEAAVANPLL----DE-------ASMKGSQGLLISITGGSD 273 (502)
Q Consensus 225 g~a~~g~g~~~g~~r~~~a~~~a~~~pll----~~-------~~~~~a~~~l~~i~~~~~ 273 (502)
=..+|+==..+-++++--+-|| |+ .-..||=|--.||.|=.-
T Consensus 162 -------K~T~GDlY~lE~~~~~~P~~~~y~GyDE~~~~~~~~G~DG~IGSTyN~~G~R~ 214 (294)
T TIGR00683 162 -------KFTAGDLYLLERLKKEYPDLLLYAGYDEIFLSALLLGVDGAIGSTYNVNGVRA 214 (294)
T ss_pred -------EECCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf -------20400588999998755630120462789887886257767655100131118
No 479
>PRK07512 L-aspartate oxidase; Provisional
Probab=29.55 E-value=26 Score=14.24 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCCCHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEC---CCHH-HHHH-------CCCCE-EEEECCCCCCCCC
Q ss_conf 578845438617999966814799999998589984499982---5578-8551-------89970-4851554255678
Q gi|254781176|r 6 ANMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVAN---TDAQ-ALMM-------SKAKQ-IIQLGSGITEGLG 73 (502)
Q Consensus 6 ~~~~~~~~~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~n---td~~-~l~~-------~~~~~-~~~~g~~~~~g~g 73 (502)
|.||++.+.-.+.|||=|.||..+--.+... +|-.+.-- +... .+.. ...+. ..++-..+.-|.|
T Consensus 1 ~~~~~~~~~tDVlVIGsG~AGL~AAl~~a~~---~v~vi~k~~~~~g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~g 77 (507)
T PRK07512 1 MEMDLDDLTGRPVIVGGGLAGLMTALKLAPR---PVVLLSRAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAG 77 (507)
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9977665369989999669999999983307---8399990588999626675245146069999999999999996478
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 888838999999972999999726
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLD 97 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~ 97 (502)
=+||++-+.-++++.+.|..+.+
T Consensus 78 -l~d~~~v~~l~~~a~~~i~~L~~ 100 (507)
T PRK07512 78 -LCDEAVARRIAAEAPAAIEDLLR 100 (507)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -78899999999989999999998
No 480
>PRK08639 threonine dehydratase; Validated
Probab=29.54 E-value=33 Score=13.46 Aligned_cols=51 Identities=31% Similarity=0.520 Sum_probs=26.7
Q ss_pred HHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 99997269-98999980367666740789999999864--984999950430004067888899
Q gi|254781176|r 91 EITEMLDK-THMCFVTAGMGGGTGTGAAPIIAKIARNK--GVLTVGVVTKPFHFEGSRRMRVAE 151 (502)
Q Consensus 91 ~i~~~~~~-~~~~~~~ag~gggtgtg~~p~ia~~a~~~--~~~~~~~v~~pf~~eg~~r~~~a~ 151 (502)
||.+-+.+ .|.||+..|- ||.-+|.+ .++|.+ .+-++|| -| ||.--|.++.
T Consensus 169 EI~eq~~~~~D~vvvpvGG-GGLiaGia----~~lK~~~P~ikIiGV--Ep---~~a~~m~~Sl 222 (418)
T PRK08639 169 EILEQLEEEPDYVFVPVGG-GGLISGVT----TYLKEVSPKTKVIGV--EP---AGAASMKAAL 222 (418)
T ss_pred HHHHHCCCCCCEEEEEECC-CHHHHHHH----HHHHHHCCCCEEEEE--EE---CCCHHHHHHH
T ss_conf 9998568878889996187-36899999----999850999718998--15---8976899999
No 481
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=29.50 E-value=33 Score=13.46 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 88389999999729999997269989999803676667407899999998649849999504300040678888999999
Q gi|254781176|r 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIE 155 (502)
Q Consensus 76 ~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~ 155 (502)
|-|..=.+--++|.+++++.|.|..-=| .=+-||+|-+|.=. |.-==...-.
T Consensus 32 gLp~k~~~f~~~sa~elke~l~~~~~~f---------------------------gGasVTiPlK~~i~-~~~DE~td~A 83 (291)
T TIGR01809 32 GLPDKYDKFETESAEELKEVLSDFGKEF---------------------------GGASVTIPLKLDIL-RFLDELTDRA 83 (291)
T ss_pred CCCCHHHHHHHCCHHHHHHHHHCCCCCC---------------------------CEEEEECCHHHHHH-HHHHHHHHHH
T ss_conf 4840454443204786479870578652---------------------------11788630378999-9875442212
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999863335450278
Q gi|254781176|r 156 ALQETVDTLIVIPNQ 170 (502)
Q Consensus 156 ~l~~~~d~~i~i~n~ 170 (502)
.|--.++|++..-|.
T Consensus 84 ~liGsvNT~~rt~n~ 98 (291)
T TIGR01809 84 SLIGSVNTVLRTQNK 98 (291)
T ss_pred HHEEHHHHCEECCCC
T ss_conf 120011110122548
No 482
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=29.48 E-value=33 Score=13.46 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=66.9
Q ss_pred EEECCCHHHHHHHHHHCCCCCCEEE-EECCC------HHHHHHCCCCEE-EEECCCCCCC-----CCCCCCHH---HHHH
Q ss_conf 9966814799999998589984499-98255------788551899704-8515542556-----78888838---9999
Q gi|254781176|r 20 FGVGGGGGNAVNNMVSSGLQGVNFV-VANTD------AQALMMSKAKQI-IQLGSGITEG-----LGAGSHPE---VGRA 83 (502)
Q Consensus 20 ~g~gg~g~n~~~~~~~~~~~~~~~~-~~ntd------~~~l~~~~~~~~-~~~g~~~~~g-----~g~g~~~~---~g~~ 83 (502)
-..||++.|+--.+-+.|.+ +.|+ ++-.| .+.|....++.. +......+-| +...|+.. +-+.
T Consensus 25 ~~pGG~~~N~A~~larLG~~-~~~vg~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~ger~~~~~~~~ 103 (304)
T PRK09434 25 KCPGGAPANVAVGVARLGGE-SGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPDHRTSTVVVDLDDQGERSFTFMVRP 103 (304)
T ss_pred ECCCCHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 46687799999999986998-79999947987899999999865997530697699984589999878997069999447
Q ss_pred HHHH--HHHHHHHHHCCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHCCCEEEE-EEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9997--29999997269989999803-67666740789999999864984999-95043000406788889999999998
Q gi|254781176|r 84 AAEE--CIDEITEMLDKTHMCFVTAG-MGGGTGTGAAPIIAKIARNKGVLTVG-VVTKPFHFEGSRRMRVAESGIEALQE 159 (502)
Q Consensus 84 ~a~~--~~~~i~~~~~~~~~~~~~ag-~gggtgtg~~p~ia~~a~~~~~~~~~-~v~~pf~~eg~~r~~~a~~~~~~l~~ 159 (502)
.|.. +.+++ ..+...+++.++.- +-....-.++-...+.+|+.|.+++- .-..|-.|... .....-+.++..
T Consensus 104 ~a~~~~~~~dl-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~g~~v~~D~n~r~~~~~~~---~~~~~~~~~~~~ 179 (304)
T PRK09434 104 SADLFLQPQDL-PPFRQGEWLHLCSIALSAEPSRSSAFEAMRRIRAAGGFVSFDPNLREDLWQDE---AELRECLRRALA 179 (304)
T ss_pred CHHHHCCHHHH-HHHCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCH---HHHHHHHHHHHH
T ss_conf 51322596565-33303785677320130785599999999999971996873477521210698---999999999997
Q ss_pred HHHHHHHHHHHH-HHHHCCC
Q ss_conf 633354502788-8741366
Q gi|254781176|r 160 TVDTLIVIPNQN-LFRIAND 178 (502)
Q Consensus 160 ~~d~~i~i~n~~-l~~~~~~ 178 (502)
++|-+ ++|+. +..+.+.
T Consensus 180 ~~di~--~~n~~E~~~l~g~ 197 (304)
T PRK09434 180 LADVV--KLSEEELCFLSGT 197 (304)
T ss_pred HCCCC--CCCHHHHHHHCCC
T ss_conf 37654--4668999987099
No 483
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=29.47 E-value=33 Score=13.46 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=39.4
Q ss_pred CCEEEEEEEC-------CCHHHHHHHHHHC-C-CCCCEEEEECCCHHHHHH--CCCCEEEEEC
Q ss_conf 8617999966-------8147999999985-8-998449998255788551--8997048515
Q gi|254781176|r 14 KPRITVFGVG-------GGGGNAVNNMVSS-G-LQGVNFVVANTDAQALMM--SKAKQIIQLG 65 (502)
Q Consensus 14 ~~~i~v~g~g-------g~g~n~~~~~~~~-~-~~~~~~~~~ntd~~~l~~--~~~~~~~~~g 65 (502)
++||.|+||| |.|--+|++|.+. . ..+|+++=--|-...|-. ..++.-|.+.
T Consensus 3 ~~rIlVLGiGNiL~~DEG~GV~~v~~L~~~~~~p~~V~liDGGT~G~~Ll~~le~~d~LIvvD 65 (195)
T PRK10264 3 EQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEEVEIVDGGTQGLNLLGYVESASHLLILD 65 (195)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEE
T ss_conf 761899912731123573899999999985689988289844531999999984299799984
No 484
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.25 E-value=18 Score=15.45 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99961688889999999999999741
Q gi|254781176|r 265 LISITGGSDLTLFEVDEAATRIREEV 290 (502)
Q Consensus 265 l~~i~~~~~~~l~e~~~~~~~i~~~~ 290 (502)
-||+--|.-+++.|+-.++++|.+.-
T Consensus 132 pV~lKkGq~~s~~e~~~aaeki~s~G 157 (281)
T PRK12457 132 PVNIKKPQFMSPTQMKHVVSKCREAG 157 (281)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 27955877699999999999999759
No 485
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=29.24 E-value=33 Score=13.43 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHCCCE-EEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 543861-7999966814799999998589984499982557885518997048515542556788888389999999729
Q gi|254781176|r 11 TELKPR-ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECI 89 (502)
Q Consensus 11 ~~~~~~-i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~ 89 (502)
...+|+ |.+-|--|||=..+-+++...+.+-.++.+|.|. +... -|..-.+ .+-.+.-.-.-..+.|..-..
T Consensus 8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~--~r~~-~P~y~~l----~~~~~~~~~~~~~~~a~~~~~ 80 (191)
T pfam06414 8 PQERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDE--LRTY-HPDYDEL----QKADPKDASELTQPDASRWVE 80 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHH--HHHH-HHHHHHH----HHCCHHHHHHHHHHHHHHHHH
T ss_conf 87698799995799888899999998753789938971358--7887-7747865----540767789998999999999
Q ss_pred HHHHHHHC-CCCEEEEEECCCCCCCCCHH-H-HHHHHHHHCCCEE-EEEEECC
Q ss_conf 99999726-99899998036766674078-9-9999998649849-9995043
Q gi|254781176|r 90 DEITEMLD-KTHMCFVTAGMGGGTGTGAA-P-IIAKIARNKGVLT-VGVVTKP 138 (502)
Q Consensus 90 ~~i~~~~~-~~~~~~~~ag~gggtgtg~~-p-~ia~~a~~~~~~~-~~~v~~p 138 (502)
..+..+++ +-++|| -||+.-.. + -+++.+|+.|--| +.+|..|
T Consensus 81 ~~~~~a~~~r~n~ii------egT~~~~~~~~~~~~~lk~~GY~v~v~~Va~~ 127 (191)
T pfam06414 81 KLIDYAIERGYNIIL------EGTLRSPDVARKLARKLKAAGYEVEVYVVAVP 127 (191)
T ss_pred HHHHHHHHCCCCEEE------ECCCCCHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 999999975999898------57778979999999999978997999999889
No 486
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=29.13 E-value=34 Score=13.42 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCCEEEEEEC-------CCCCCCCCH---HHHHHHHHHHCCC
Q ss_conf 9989999803-------676667407---8999999986498
Q gi|254781176|r 98 KTHMCFVTAG-------MGGGTGTGA---APIIAKIARNKGV 129 (502)
Q Consensus 98 ~~~~~~~~ag-------~gggtgtg~---~p~ia~~a~~~~~ 129 (502)
+.+.+-+.|= +.-|||--+ -|||+++|||.|+
T Consensus 84 nPk~It~lAP~vT~~~T~laGTGhvayS~lPVIaeVA~~~gI 125 (433)
T PRK09412 84 NPKYITFLAPIVTYLFTFLAGTGHIAYSTLPVIAEVAKEQGI 125 (433)
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 998189951288899998616650434431899999997399
No 487
>PRK13984 putative oxidoreductase; Provisional
Probab=29.10 E-value=34 Score=13.41 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=10.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCC
Q ss_conf 17999966814799999998589
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGL 38 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~ 38 (502)
|+.|||=|=||--+-..|.+.|.
T Consensus 285 KVAVIGsGPAGLaaA~~Lar~Gh 307 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGY 307 (604)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC
T ss_conf 89998986899999999998698
No 488
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.09 E-value=34 Score=13.41 Aligned_cols=104 Identities=24% Similarity=0.402 Sum_probs=55.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-H
Q ss_conf 861799996681479999999858998449998255788551899704851554255678888838999999972999-9
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDE-I 92 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~-i 92 (502)
+.+|.++|.=|||=.+|-++....+. ..|+ +||..--.....+.. .+-. +-|+....+-..+ +
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L~-~~fi--D~D~~Ie~~~g~si~-----~if~--------~~Ge~~FR~~E~~~l 67 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRLG-YEFI--DTDHLIEARAGKSIP-----EIFE--------EEGEAGFRELEEEVL 67 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCCC--CCCHHHHHHHCCCHH-----HHHH--------HHCHHHHHHHHHHHH
T ss_conf 98089888999998999999999959-6902--398899976169999-----9999--------858899999999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 997269989999803676667407899999998649849999504300
Q gi|254781176|r 93 TEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 93 ~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~ 140 (502)
.+++...+.|+ ..|||+= ..|-.-++.+..|. +-+...||.
T Consensus 68 ~~l~~~~~~VI---stGGG~v--~~~~~~~~L~~~g~--vV~L~~~~e 108 (175)
T PRK00131 68 AELLQRHNLVI---STGGGAV--LREENRALLRERGT--VVYLDASFE 108 (175)
T ss_pred HHHCCCCCEEE---ECCCCCC--CCHHHHHHHHCCCC--EEEEECCHH
T ss_conf 96514798599---7489822--68899999981693--799857999
No 489
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=28.99 E-value=34 Score=13.40 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=26.2
Q ss_pred CCCCCCC-CHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 6655558-98787876415865899876148620489999887527010002245553789996
Q gi|254781176|r 206 KEGLINL-DFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISI 268 (502)
Q Consensus 206 ~~g~in~-df~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i 268 (502)
-||+-.- ++.=.+.-|+. +.+||.+.-..+..+ ..+.-.+|.-.-+ -.++-|.+-++.+-
T Consensus 265 yPgL~s~p~~~~~~~~~~g-~ggl~sf~l~~~~~~-~~~f~~~l~lf~~-~~S~Gg~~SLi~~p 325 (369)
T cd00614 265 YPGLPSHPQHELAKKQMSG-YGGVFSFELKGGLEA-AKKFLNALKLFSL-AVSLGGVESLVEHP 325 (369)
T ss_pred CCCCCCCCCHHHHHHHCCC-CCEEEEEEECCCHHH-HHHHHHHCCCCEE-CCCCCCCCCEEECC
T ss_conf 8789888048999976899-971779997698999-9999985890633-12678767156776
No 490
>pfam01175 Urocanase Urocanase.
Probab=28.90 E-value=34 Score=13.39 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=27.2
Q ss_pred HHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 97269--98999980367666740789999999864984999950430004
Q gi|254781176|r 94 EMLDK--THMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFE 142 (502)
Q Consensus 94 ~~~~~--~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~e 142 (502)
+.+.+ +..+|+||||||=- ||-|--+.+| |...+++=.-|-..+
T Consensus 148 k~~g~~L~Gk~~lTaGLGGMg--GAQPlA~~ma---g~v~i~~Evd~~ri~ 193 (545)
T pfam01175 148 KHFGGDLAGKLILTAGLGGMG--GAQPLAATMA---GAVCLAVEVDESRID 193 (545)
T ss_pred HHCCCCCCCCEEEECCCCCCC--CCCHHHHHHC---CCEEEEEEECHHHHH
T ss_conf 873988677179940677665--4335778752---762899983899999
No 491
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=28.82 E-value=33 Score=13.46 Aligned_cols=25 Identities=28% Similarity=0.617 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 58987878764158658998761486
Q gi|254781176|r 211 NLDFADVRSVMRNMGRAMMGTGEASG 236 (502)
Q Consensus 211 n~df~d~~~v~~~~g~a~~g~g~~~g 236 (502)
-+-++||+.+|+. |-+++|+.....
T Consensus 52 ~~~W~DV~g~l~~-GGT~IGtARC~~ 76 (777)
T TIGR02478 52 ELSWEDVRGILSL-GGTLIGTARCKE 76 (777)
T ss_pred HCCCCCCCCHHHC-CCCEEEEEEECC
T ss_conf 1144231223344-873342032154
No 492
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=28.76 E-value=34 Score=13.37 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf 888883899999997299999972699899998036766674078999999986498499995043000406
Q gi|254781176|r 73 GAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGS 144 (502)
Q Consensus 73 g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~ 144 (502)
-.++||+.+..+|++-.++ ++.+.++ |+..|+.+--++.++.+.|++.+...+.|-.+.++
T Consensus 45 D~~~dp~~a~~~a~~Li~~-----d~V~aii------G~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~ 105 (333)
T cd06359 45 DDGLKPDVAKQAAERLIKR-----DKVDFVT------GVVFSNVLLAVVPPVLESGTFYISTNAGPSQLAGK 105 (333)
T ss_pred CCCCCHHHHHHHHHHHHHC-----CCCEEEE------CCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 7999989999999999963-----8963997------68775889999999984794476127777643466
No 493
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=28.65 E-value=34 Score=13.36 Aligned_cols=100 Identities=20% Similarity=0.421 Sum_probs=48.9
Q ss_pred EEEEEEECCCHH--HHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 179999668147--999999985899844999825578855189970485155425567888883899999997299999
Q gi|254781176|r 16 RITVFGVGGGGG--NAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEIT 93 (502)
Q Consensus 16 ~i~v~g~gg~g~--n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~ 93 (502)
||.|+|.|..|. -++..+.+.|.. |. ..+-+ .+...............+....|--.+ .
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~~g~~-~~--~~D~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~ 61 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKKKGAE-VT--VTDDD-PEEELERSKGQLKLSEGVVLYTGGKDD---------------L 61 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCE-EE--EEECC-CCCCCCCHHHHCCCCCCEEEEECCCCC---------------C
T ss_conf 97899867510789999999972987-99--99845-221343113312455641353267531---------------0
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 97269989999803676667407899999998649849999504300
Q gi|254781176|r 94 EMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFH 140 (502)
Q Consensus 94 ~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~ 140 (502)
+.+.+.|+|.+-=|.=.-+ |.| +.|+..|+-+++=+-+=|.
T Consensus 62 ~~~~~~d~vv~SPGi~~~h-----p~~-~~a~~~g~~v~gdi~L~~~ 102 (476)
T TIGR01087 62 EDLNNADLVVLSPGIPPDH-----PLV-QAAAKRGIPVVGDIELALR 102 (476)
T ss_pred CCCCCCEEEEECCCCCCCC-----HHH-HHHHHCCCEEEEHHHHHHH
T ss_conf 1233420799789898677-----799-9999669808986799997
No 494
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.65 E-value=34 Score=13.36 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 7048515542556788888389999999729999997269989999803676667407899999998649849999
Q gi|254781176|r 59 KQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 (502)
Q Consensus 59 ~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~ 134 (502)
++-+.+|.++|.|.|-.+.-. ..+...+.+.++-|+-.|.+|-|-.+...-+-+.......-.|-|
T Consensus 2 ~rIv~~GDSiT~g~g~~~~~~----------~~l~~~~~~~~~~viN~Gi~G~t~~~~~~r~~~~v~~~~Pd~Vii 67 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVE----------TYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSI 67 (191)
T ss_pred CEEEEECCCHHHCCCCHHHHH----------HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999998887430996646899----------999986799986599843668877779999898873279999999
No 495
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=28.64 E-value=34 Score=13.36 Aligned_cols=230 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred EECCCHHHHHHHHHHCCCCCCEEEEECCCH-----HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 966814799999998589984499982557-----885518997048515542556788888389999999729999997
Q gi|254781176|r 21 GVGGGGGNAVNNMVSSGLQGVNFVVANTDA-----QALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 21 g~gg~g~n~~~~~~~~~~~~~~~~~~ntd~-----~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
|-|=-|.+.+.++.+.|...|-.+-.+... +.|.......++.+ ..+-..+.+.+.++
T Consensus 6 GaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~~DI~D~~~l~~~ 68 (280)
T pfam02719 6 GGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRF-----------------FIGDVRDRERLERA 68 (280)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE-----------------EECCCCCHHHHHHH
T ss_conf 8867999999999968998899990887427789999886267898389-----------------98116898999999
Q ss_pred HC--CCCEEEEEECCCCCCCCCHHHH------------HHHHHHHCCCEEEEEEEC-----CCCCCCHHHHHHHHHHHHH
Q ss_conf 26--9989999803676667407899------------999998649849999504-----3000406788889999999
Q gi|254781176|r 96 LD--KTHMCFVTAGMGGGTGTGAAPI------------IAKIARNKGVLTVGVVTK-----PFHFEGSRRMRVAESGIEA 156 (502)
Q Consensus 96 ~~--~~~~~~~~ag~gggtgtg~~p~------------ia~~a~~~~~~~~~~v~~-----pf~~eg~~r~~~a~~~~~~ 156 (502)
++ +.|.||-.|++.+-.-+-.-|. +.++||+.++-.+-+++. |.+.=|.-++.--.-...-
T Consensus 69 ~~~~~~D~V~HlAA~~~V~~s~~~P~~~~~~Nv~gT~nlLe~a~~~~vk~~v~~STd~a~~P~s~Yg~sK~~~E~l~~~y 148 (280)
T pfam02719 69 MEEYGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLISTDKAVNPTNVMGATKRLAEKLFQAA 148 (280)
T ss_pred HHHCCCCEEEECHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 87549999998103116532766999999887277799998888539624551476644569984542377789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 99863335450278887413665318999744679999998888876516655558987878764158658998761486
Q gi|254781176|r 157 LQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASG 236 (502)
Q Consensus 157 l~~~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i~~~i~~~g~in~df~d~~~v~~~~g~a~~g~g~~~g 236 (502)
-+.+-...+.+--=|.+.+|+++-++.--| +.+..++ -.+....|-+-.||-.|.-+
T Consensus 149 ~~~~~~~~~~~~~lR~fNVyGprgsVIp~F------i~~~~~~-~pi~I~dg~qtRdf~~V~D~---------------- 205 (280)
T pfam02719 149 NRESGSGKTRFSAVRFGNVLGSRGSVIPLF------KKQIAEG-GPVTVTHPDMTRFFMTIPEA---------------- 205 (280)
T ss_pred HHHHCCCCCEEEEEEECCEECCCCCCHHHH------HHHHHCC-CCEEECCCCCEEEEEEHHHH----------------
T ss_conf 997199985489875445028997709999------9999859-98656599843855879999----------------
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE-EEEECCCCCCEE
Q ss_conf 20489999887527010002245553789996168888999999999999974168863999-853134657547
Q gi|254781176|r 237 HGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIIL-GATFDEALEGVI 310 (502)
Q Consensus 237 ~~r~~~a~~~a~~~pll~~~~~~~a~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~-G~~~d~~~~~~~ 310 (502)
++|+-.|+.+ +..|=..|+-.|..+++.|+-+++ .++.+|.+ |.+.-|.|.+.+
T Consensus 206 ----v~~~l~a~~~---------~~~geifnig~g~~~sI~dLAk~i-------~~~~~i~~ig~r~Gek~~e~l 260 (280)
T pfam02719 206 ----VQLVLQAGAM---------GKGGEIFVLDMGEPVKIVDLAKAM-------IGDIEIKITGLRPGEKLYEEL 260 (280)
T ss_pred ----HHHHHHHHHH---------CCCCCEEECCCCCCEEHHHHHHHH-------CCCCCEEEECCCCCCCCCEEE
T ss_conf ----9999999972---------877867888899866999999975-------479997995799862313021
No 496
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=28.61 E-value=34 Score=13.35 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCCCEEE----------------------EECCCHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 17999966814799999998589984499----------------------98255788551899704851554255678
Q gi|254781176|r 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFV----------------------VANTDAQALMMSKAKQIIQLGSGITEGLG 73 (502)
Q Consensus 16 ~i~v~g~gg~g~n~~~~~~~~~~~~~~~~----------------------~~ntd~~~l~~~~~~~~~~~g~~~~~g~g 73 (502)
|+.|||=|-||--+--.|.+.|.+ |..+ .++-+.+.|...-+.-+.-+|..+|-
T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~-VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnvg~ditl--- 627 (1032)
T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHP-VTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGCSPDLTV--- 627 (1032)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH---
T ss_conf 799989688999999999977993-6998158978842673588767899999999999997796999699998889---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 88883899999997299999972699899998036766
Q gi|254781176|r 74 AGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGG 111 (502)
Q Consensus 74 ~g~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~ggg 111 (502)
+++++ +|.|-|||..|.+..
T Consensus 628 ----------------e~L~~--eGyDAVfLa~GA~~~ 647 (1032)
T PRK09853 628 ----------------EQLKN--QGYHYVLLAIGADKN 647 (1032)
T ss_pred ----------------HHHHH--CCCCEEEEECCCCCC
T ss_conf ----------------99965--799999994588988
No 497
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=28.61 E-value=34 Score=13.35 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 66674078999999986498499995
Q gi|254781176|r 110 GGTGTGAAPIIAKIARNKGVLTVGVV 135 (502)
Q Consensus 110 ggtgtg~~p~ia~~a~~~~~~~~~~v 135 (502)
|-||||=+=.||.+-.+.+--|+.++
T Consensus 36 GvTGsGKTFT~AnVIa~~~rPTLV~a 61 (667)
T TIGR00631 36 GVTGSGKTFTMANVIAQVQRPTLVLA 61 (667)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 32148627889899998479849985
No 498
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=28.57 E-value=34 Score=13.35 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999997299999972-6998999980367666740789999999864984999950430004067888899999999986
Q gi|254781176|r 82 RAAAEECIDEITEML-DKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQET 160 (502)
Q Consensus 82 ~~~a~~~~~~i~~~~-~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~ 160 (502)
+.|+....+.|++.+ ....-|.|.+| .|-.-|=+-++|+..++.|.-+..+...|- .....-+..-++.+++.
T Consensus 10 e~Ag~~~a~~i~~~~~~~~~~v~il~G--~GNNGGDGlv~Ar~L~~~g~~V~v~~~~~~----~~~~~~~~~~~~~~~~~ 83 (170)
T pfam03853 10 ENAGRAVARVIRKLLSPAGKRVLVLCG--PGNNGGDGLAAARHLAQRGYKVTVLLLNPD----EKLSEDARRALEIAKKL 83 (170)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHHHHHHHHHHC
T ss_conf 999999999999861877886999987--998728899999999987990799996785----55999999999999986
No 499
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=28.28 E-value=35 Score=13.31 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred EEEEE-ECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999-66814799999998589984499982557885518997048515542556788888389999999729999997
Q gi|254781176|r 17 ITVFG-VGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEM 95 (502)
Q Consensus 17 i~v~g-~gg~g~n~~~~~~~~~~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~~~~~i~~~ 95 (502)
|.|.| -|=-|.+.+.++.+.|.. |--+..+.............+...+.-.-. +.+.++
T Consensus 1 ILItGasGfiG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~dl~~~-------------------~~~~~~ 60 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQEGYE-VIVLGRRRRSESLNTGRIRFRFHEGDLTDP-------------------DALERL 60 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCHHHHHHCCCCCEEEEEECCCH-------------------HHHHHH
T ss_conf 799728979999999999978798-999989973012221146765999658899-------------------999999
Q ss_pred HCCC--CEEEEEECCCCCCCCCHHHH------------HHHHHHHCCCEEEEEEEC-------------------CCCCC
Q ss_conf 2699--89999803676667407899------------999998649849999504-------------------30004
Q gi|254781176|r 96 LDKT--HMCFVTAGMGGGTGTGAAPI------------IAKIARNKGVLTVGVVTK-------------------PFHFE 142 (502)
Q Consensus 96 ~~~~--~~~~~~ag~gggtgtg~~p~------------ia~~a~~~~~~~~~~v~~-------------------pf~~e 142 (502)
+++. |.||=+|+..+..-+..-|. +.+.|++.++-.+-++.. |.+.=
T Consensus 61 ~~~~~~D~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~~~~~I~~SS~~vYg~~~~~~~~E~~~~~p~~~Y 140 (235)
T pfam01370 61 LAEVQPDAVIHLAAQSGVGASFEDPAEFIRANVLGTLNLLEAARRAGVKRFVFASSSEVYGDVADPPITEDTPLGPLSPY 140 (235)
T ss_pred HHHCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 85389989998977478326551999999999999999999999839998999256357479999997777788985079
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHH
Q ss_conf 06788889999999998-63335450278887413665318999744679999998888-87651665555898787876
Q gi|254781176|r 143 GSRRMRVAESGIEALQE-TVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYSGVSCI-TDLMIKEGLINLDFADVRSV 220 (502)
Q Consensus 143 g~~r~~~a~~~~~~l~~-~~d~~i~i~n~~l~~~~~~~~~~~~af~~~d~~l~~~v~~i-~~~i~~~g~in~df~d~~~v 220 (502)
|..+...-.....--++ ..+.+++ |+..+|++.........+-..++.+..++- .-.+...|..-.||-+++-+
T Consensus 141 ~~sK~~~E~~~~~~~~~~~~~~~il----R~~~vyGp~~~~~~~~~~i~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~ 216 (235)
T pfam01370 141 AAAKLAGERLVLAYARAYGLRAVIL----RLFNVYGPGDNDTFVTHVIPALIRRILEGKPEILLLGDGTQRRDFLYVDDV 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC----CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEECCCCHHHH
T ss_conf 9999999999999999848898650----012598899887762148999999998289972770899978917949999
Q ss_pred HC
Q ss_conf 41
Q gi|254781176|r 221 MR 222 (502)
Q Consensus 221 ~~ 222 (502)
.+
T Consensus 217 ~~ 218 (235)
T pfam01370 217 AR 218 (235)
T ss_pred HH
T ss_conf 99
No 500
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=28.23 E-value=35 Score=13.31 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 838999999972999999726998999980367666740789999999864984999950
Q gi|254781176|r 77 HPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVT 136 (502)
Q Consensus 77 ~~~~g~~~a~~~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~ 136 (502)
+.+-|.....+..+++..+ +.+.|=||-|=||+|-.+..-+++++.++.|+-+++-.|
T Consensus 33 k~~~~~~~l~~~i~~L~~l--~P~FvSVTyGAggstr~~T~~i~~~i~~~~~i~~~~HLT 90 (296)
T PRK09432 33 RTSEMEQTLWNSIDRLSSL--KPKFVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLT 90 (296)
T ss_pred CCHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8906899999999998516--999899607989977356999999999874998112666
Done!