HHsearch results for GI: 254781176 and protein with PDBid: 1tk9_A
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=94.26 E-value=0.3 Score=26.99 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHC----C--CCCCEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86179999668147999999985----8--99844999825578855189970485155425567888883899999997
Q gi|254781176|r 14 KPRITVFGVGGGGGNAVNNMVSS----G--LQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAAEE 87 (502)
Q Consensus 14 ~~~i~v~g~gg~g~n~~~~~~~~----~--~~~~~~~~~ntd~~~l~~~~~~~~~~~g~~~~~g~g~g~~~~~g~~~a~~ 87 (502)
.-||.++|.||.+..+.-.-.+. + -.....+.+..|...+.....+. | . .+-
T Consensus 42 ~~kI~~~GnGgSa~~A~h~a~~~~~~~~~~~~~~~~i~l~~~~~~~ta~~nd~----~-----------~-------~~~ 99 (188)
T 1tk9_A 42 GGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDY----G-----------F-------EFV 99 (188)
T ss_dssp TCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHT----C-----------G-------GGH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C-----------H-------HHH
T ss_conf 99899996873188899999984588645653222214678732223312458----9-----------8-------999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999997269989999803676667407899999998649849999504300040678888999999999863335450
Q gi|254781176|r 88 CIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVI 167 (502)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~ag~gggtgtg~~p~ia~~a~~~~~~~~~~v~~pf~~eg~~r~~~a~~~~~~l~~~~d~~i~i 167 (502)
...+++...+.-|+++...+=|. |-----.++.||++|+.|+++...+ .| .|.+.+|-.|.|
T Consensus 100 f~~ql~~~~~~gDvlI~iS~SG~---s~nii~a~~~Ak~~g~~~i~ltg~~---~~------------~l~~~~D~~i~v 161 (188)
T 1tk9_A 100 FSRQVEALGNEKDVLIGISTSGK---SPNVLEALKKAKELNMLCLGLSGKG---GG------------MMNKLCDHNLVV 161 (188)
T ss_dssp HHHHHHHHCCTTCEEEEECSSSC---CHHHHHHHHHHHHTTCEEEEEEEGG---GT------------THHHHCSEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEECCCC---CCCHHHHHHHHHHCCCEEEEEECCC---CH------------HHHHHCCEEEEE
T ss_conf 99999983789998999828999---9557789999998799899995789---52------------679868988997
Q ss_pred HHHH
Q ss_conf 2788
Q gi|254781176|r 168 PNQN 171 (502)
Q Consensus 168 ~n~~ 171 (502)
|-+.
T Consensus 162 ps~~ 165 (188)
T 1tk9_A 162 PSDD 165 (188)
T ss_dssp SCSC
T ss_pred CCCC
T ss_conf 9998