HHsearch results for GI: 254781176 and protein with PDBid: 2nvu_B
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=91.93 E-value=0.49 Score=25.41 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=52.1
Q ss_pred HCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCH-----HHHHHHHCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 1366531899974467999999----888887651665555898-----7878764158658998761486204899998
Q gi|254781176|r 175 IANDKTTFADAFSMADQVLYSG----VSCITDLMIKEGLINLDF-----ADVRSVMRNMGRAMMGTGEASGHGRGIQAAE 245 (502)
Q Consensus 175 ~~~~~~~~~~af~~~d~~l~~~----v~~i~~~i~~~g~in~df-----~d~~~v~~~~g~a~~g~g~~~g~~r~~~a~~ 245 (502)
+.....+..+|++-|.+-+.+. -+.|..++.+||--.-+- ..+...|+++-.-++|.|- -| .+.++
T Consensus 354 v~~G~~tpeeAL~~Aq~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~kVLvvG~gg-lG----~Ei~K 428 (805)
T 2nvu_B 354 AASGRQTVDAALAAAQTNAAADWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGG-LG----CELLK 428 (805)
T ss_dssp HHTTSSCHHHHHHHHHHHHSSSCTTTTHHHHHHHHSCCTTSCTTCCCCSHHHHHHHHTCCEEEECCSS-HH----HHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCH-HH----HHHHH
T ss_conf 98599956899999999876544312126788752899999999788857899997249689449789-99----99999
Q ss_pred HHHHCC-----CCCCCCC--CCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 875270-----1000224--555-3789996168888999999999999974168863999
Q gi|254781176|r 246 AAVANP-----LLDEASM--KGS-QGLLISITGGSDLTLFEVDEAATRIREEVDSEANIIL 298 (502)
Q Consensus 246 ~a~~~p-----ll~~~~~--~~a-~~~l~~i~~~~~~~l~e~~~~~~~i~~~~~~~a~ii~ 298 (502)
.-.-+- |+|...+ ..- +..| ..-.|+...-..-+..++++ .+|.++|..
T Consensus 429 nL~l~Gv~~i~i~D~d~V~~snL~rQfl---~~~~dvGk~Ka~~a~~~l~~-lNp~v~i~~ 485 (805)
T 2nvu_B 429 NLALSGFRQIHVIDMDTIDVSNLNRQFL---FRPKDIGRPKAEVAAEFLND-RVPNCNVVP 485 (805)
T ss_dssp HHHTTTCCEEEEEECCBCCGGGGGTCTT---CCGGGTTSBHHHHHHHHHHH-HSTTCEEEE
T ss_pred HHHHCCCCEEEEECCCEECHHHCCCCCC---CCHHHCCCHHHHHHHHHHHH-HCCCCEEEE
T ss_conf 9998499859998598506766686811---57466897699999999998-789988999