HHsearch results for GI: 254781176 and protein with PDBid: 3cb2_A
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=99.11 E-value=8.8e-10 Score=89.99 Aligned_cols=267 Identities=19% Similarity=0.241 Sum_probs=174.6
Q ss_pred EEEEEECCCHHHHHHHHHHC-----CC-------------------------CC---CEEEEECCCHHHHHHCCC-----
Q ss_conf 79999668147999999985-----89-------------------------98---449998255788551899-----
Q gi|254781176|r 17 ITVFGVGGGGGNAVNNMVSS-----GL-------------------------QG---VNFVVANTDAQALMMSKA----- 58 (502)
Q Consensus 17 i~v~g~gg~g~n~~~~~~~~-----~~-------------------------~~---~~~~~~ntd~~~l~~~~~----- 58 (502)
|-.|-||+||+.+=+.+.+. ++ .+ ..-|.+++|.+.+.....
T Consensus 5 II~lqiGQcGnQIG~~~w~~l~~Eh~i~~~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~vD~E~~vi~~i~~~~~~~ 84 (475)
T 3cb2_A 5 IITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAK 84 (475)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSCBCTTCCTTSSCGGGTEEECTTSCEEECEEEEESSSHHHHHHHHSTTTT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCEEEEECCHHHHHHHHCCCCCC
T ss_conf 89995576599999999999999829897888476555565444540578899826056799979747999987485435
Q ss_pred ---CEEEEECCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCCHHHHHHHHHHHC-
Q ss_conf ---7048515542556788888389----99999972999999726998---999980367666740789999999864-
Q gi|254781176|r 59 ---KQIIQLGSGITEGLGAGSHPEV----GRAAAEECIDEITEMLDKTH---MCFVTAGMGGGTGTGAAPIIAKIARNK- 127 (502)
Q Consensus 59 ---~~~~~~g~~~~~g~g~g~~~~~----g~~~a~~~~~~i~~~~~~~~---~~~~~ag~gggtgtg~~p~ia~~a~~~- 127 (502)
+..+..|. .|-|||-.-.. |.+..++-.+.|++.++.+| =.+++-.||||||+|-.--|.+.-++.
T Consensus 85 ~f~~~n~~~~~---~~~g~~n~~~~gy~~g~~~~d~i~d~iRk~~E~cD~l~gf~~~~Sl~GGTGSGlGs~i~e~L~d~y 161 (475)
T 3cb2_A 85 LYNPENIYLSE---HGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRY 161 (475)
T ss_dssp TSCGGGEEECC---TTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSSHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHEEECC---CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf 43723367625---678865314121053388899999999877741898556312310588877748899999987648
Q ss_pred -CCEEEEEEECCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf -98499995043000---4067888899999999986333545027888741366531899-974467999999888887
Q gi|254781176|r 128 -GVLTVGVVTKPFHF---EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITD 202 (502)
Q Consensus 128 -~~~~~~~v~~pf~~---eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~ 202 (502)
....+.++..|+.+ |-..-.=++.-.|..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.
T Consensus 162 pk~~~~~~~V~Psp~~~~~vvvq~YNsvLsl~~L~e~sD~ii~fdN~aL~~ic~~~l~i~~p~~~d~N~vIAq~ls~~T~ 241 (475)
T 3cb2_A 162 PKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241 (475)
T ss_dssp TTSEEEEEEEECCTTSCCSCTTHHHHHHHHHHHHHHSCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 76247878886585103784141419899998888518768862479999999985599999813456888876335654
Q ss_pred HHHCCCCCCCCHHHHHHHHC-CCCEEEEEEEECCC---------C-CHHHHHHHHHHHC--CCCCCCCCC-CC----CEE
Q ss_conf 65166555589878787641-58658998761486---------2-0489999887527--010002245-55----378
Q gi|254781176|r 203 LMIKEGLINLDFADVRSVMR-NMGRAMMGTGEASG---------H-GRGIQAAEAAVAN--PLLDEASMK-GS----QGL 264 (502)
Q Consensus 203 ~i~~~g~in~df~d~~~v~~-~~g~a~~g~g~~~g---------~-~r~~~a~~~a~~~--pll~~~~~~-~a----~~~ 264 (502)
.+.-||..|.|+.++.+=|- ....-.+-+..+.= . -...+-....+.. -++. .... +. -.+
T Consensus 242 ~~Rf~~~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~~~~~l~~~~n~~~~-~~~~~~~~~~~la~ 320 (475)
T 3cb2_A 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVS-TGRDRQTNHCYIAI 320 (475)
T ss_dssp TTSSSSCTTCSHHHHHHHHCSSTTCCEEEEEEECCC------CCSCCCHHHHHHHTTSGGGBSSC-CCCC--CCCCEEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCEE-CCCCCCCCCHHHHH
T ss_conf 45677545788788503545588753012256663004565541267599999975050137573-68975657217879
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9996168888999999999999974
Q gi|254781176|r 265 LISITGGSDLTLFEVDEAATRIREE 289 (502)
Q Consensus 265 l~~i~~~~~~~l~e~~~~~~~i~~~ 289 (502)
++-+.| ++...++......++..
T Consensus 321 ~~~~RG--~~~~~~~~~~~~~l~~k 343 (475)
T 3cb2_A 321 LNIIQG--EVDPTQVHKSLQRIRER 343 (475)
T ss_dssp EEEEES--SCCHHHHHHHHHHHHHT
T ss_pred HHHHCC--CCCHHHHHHHHHHHHHH
T ss_conf 999749--98878999999998753