HHsearch results for GI: 254781176 and protein with PDBid: 3cb2_A

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=99.11  E-value=8.8e-10  Score=89.99  Aligned_cols=267  Identities=19%  Similarity=0.241  Sum_probs=174.6

Q ss_pred             EEEEEECCCHHHHHHHHHHC-----CC-------------------------CC---CEEEEECCCHHHHHHCCC-----
Q ss_conf             79999668147999999985-----89-------------------------98---449998255788551899-----
Q gi|254781176|r   17 ITVFGVGGGGGNAVNNMVSS-----GL-------------------------QG---VNFVVANTDAQALMMSKA-----   58 (502)
Q Consensus        17 i~v~g~gg~g~n~~~~~~~~-----~~-------------------------~~---~~~~~~ntd~~~l~~~~~-----   58 (502)
                      |-.|-||+||+.+=+.+.+.     ++                         .+   ..-|.+++|.+.+.....     
T Consensus         5 II~lqiGQcGnQIG~~~w~~l~~Eh~i~~~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~vD~E~~vi~~i~~~~~~~   84 (475)
T 3cb2_A            5 IITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAK   84 (475)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSCBCTTCCTTSSCGGGTEEECTTSCEEECEEEEESSSHHHHHHHHSTTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCEEEEECCHHHHHHHHCCCCCC
T ss_conf             89995576599999999999999829897888476555565444540578899826056799979747999987485435


Q ss_pred             ---CEEEEECCCCCCCCCCCCCHHH----HHHHHHHHHHHHHHHHCCCC---EEEEEECCCCCCCCCHHHHHHHHHHHC-
Q ss_conf             ---7048515542556788888389----99999972999999726998---999980367666740789999999864-
Q gi|254781176|r   59 ---KQIIQLGSGITEGLGAGSHPEV----GRAAAEECIDEITEMLDKTH---MCFVTAGMGGGTGTGAAPIIAKIARNK-  127 (502)
Q Consensus        59 ---~~~~~~g~~~~~g~g~g~~~~~----g~~~a~~~~~~i~~~~~~~~---~~~~~ag~gggtgtg~~p~ia~~a~~~-  127 (502)
                         +..+..|.   .|-|||-.-..    |.+..++-.+.|++.++.+|   =.+++-.||||||+|-.--|.+.-++. 
T Consensus        85 ~f~~~n~~~~~---~~~g~~n~~~~gy~~g~~~~d~i~d~iRk~~E~cD~l~gf~~~~Sl~GGTGSGlGs~i~e~L~d~y  161 (475)
T 3cb2_A           85 LYNPENIYLSE---HGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRY  161 (475)
T ss_dssp             TSCGGGEEECC---TTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSSHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHEEECC---CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf             43723367625---678865314121053388899999999877741898556312310588877748899999987648


Q ss_pred             -CCEEEEEEECCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             -98499995043000---4067888899999999986333545027888741366531899-974467999999888887
Q gi|254781176|r  128 -GVLTVGVVTKPFHF---EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFAD-AFSMADQVLYSGVSCITD  202 (502)
Q Consensus       128 -~~~~~~~v~~pf~~---eg~~r~~~a~~~~~~l~~~~d~~i~i~n~~l~~~~~~~~~~~~-af~~~d~~l~~~v~~i~~  202 (502)
                       ....+.++..|+.+   |-..-.=++.-.|..|.+++|.++++.|+.|.++....+.+.. .|.-.|.++++.+.+++.
T Consensus       162 pk~~~~~~~V~Psp~~~~~vvvq~YNsvLsl~~L~e~sD~ii~fdN~aL~~ic~~~l~i~~p~~~d~N~vIAq~ls~~T~  241 (475)
T 3cb2_A          162 PKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT  241 (475)
T ss_dssp             TTSEEEEEEEECCTTSCCSCTTHHHHHHHHHHHHHHSCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             76247878886585103784141419899998888518768862479999999985599999813456888876335654


Q ss_pred             HHHCCCCCCCCHHHHHHHHC-CCCEEEEEEEECCC---------C-CHHHHHHHHHHHC--CCCCCCCCC-CC----CEE
Q ss_conf             65166555589878787641-58658998761486---------2-0489999887527--010002245-55----378
Q gi|254781176|r  203 LMIKEGLINLDFADVRSVMR-NMGRAMMGTGEASG---------H-GRGIQAAEAAVAN--PLLDEASMK-GS----QGL  264 (502)
Q Consensus       203 ~i~~~g~in~df~d~~~v~~-~~g~a~~g~g~~~g---------~-~r~~~a~~~a~~~--pll~~~~~~-~a----~~~  264 (502)
                      .+.-||..|.|+.++.+=|- ....-.+-+..+.=         . -...+-....+..  -++. .... +.    -.+
T Consensus       242 ~~Rf~~~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~~~~~l~~~~n~~~~-~~~~~~~~~~~la~  320 (475)
T 3cb2_A          242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVS-TGRDRQTNHCYIAI  320 (475)
T ss_dssp             TTSSSSCTTCSHHHHHHHHCSSTTCCEEEEEEECCC------CCSCCCHHHHHHHTTSGGGBSSC-CCCC--CCCCEEEE
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCCEE-CCCCCCCCCHHHHH
T ss_conf             45677545788788503545588753012256663004565541267599999975050137573-68975657217879


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             9996168888999999999999974
Q gi|254781176|r  265 LISITGGSDLTLFEVDEAATRIREE  289 (502)
Q Consensus       265 l~~i~~~~~~~l~e~~~~~~~i~~~  289 (502)
                      ++-+.|  ++...++......++..
T Consensus       321 ~~~~RG--~~~~~~~~~~~~~l~~k  343 (475)
T 3cb2_A          321 LNIIQG--EVDPTQVHKSLQRIRER  343 (475)
T ss_dssp             EEEEES--SCCHHHHHHHHHHHHHT
T ss_pred             HHHHCC--CCCHHHHHHHHHHHHHH
T ss_conf             999749--98878999999998753