RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781176|ref|YP_003065589.1| cell division protein FtsZ
[Candidatus Liberibacter asiaticus str. psy62]
(502 letters)
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells..
Length = 304
Score = 479 bits (1236), Expect = e-136
Identities = 188/304 (61%), Positives = 231/304 (75%)
Query: 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGA 74
+I V GVGGGGGNAVN M+ SGL+GV F+ ANTDAQAL SKA IQLG +T GLGA
Sbjct: 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGA 60
Query: 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134
G PEVGR AAEE +EI E L+ M F+TAGMGGGTGTGAAP+IAKIA+ G LTV V
Sbjct: 61 GGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAV 120
Query: 135 VTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLY 194
VTKPF FEG +RMR AE G+E L++ VDTLIVIPN L + + +AF +AD VL
Sbjct: 121 VTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFKLADDVLA 180
Query: 195 SGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254
V I+DL+ K GLINLDFADV++VM+N G A+MG GEASG R I+AAE A+++PLL+
Sbjct: 181 QAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLE 240
Query: 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSV 314
+ S+ G++G+L++ITGGSDLTL EV+EAA I+E+VD +ANII GAT DE+LE IRV+V
Sbjct: 241 DDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTV 300
Query: 315 VATG 318
+ATG
Sbjct: 301 IATG 304
>gnl|CDD|30555 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 378 bits (973), Expect = e-105
Identities = 181/312 (58%), Positives = 224/312 (71%), Gaps = 1/312 (0%)
Query: 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITE 70
LK RI V GVGG GGNAVN M+ G++GV F+ NTDAQAL SKA + I +G IT
Sbjct: 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITR 67
Query: 71 GLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130
GLGAG++PEVGRAAAEE I+EI E L M FVTAGMGGGTGTGAAP++A+IA+ G L
Sbjct: 68 GLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGAL 127
Query: 131 TVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMAD 190
TV VVT PF FEGS RM AE GIE L+E VDTLIVIPN L + DKT A+AF+ AD
Sbjct: 128 TVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK-DKTPIAEAFNEAD 186
Query: 191 QVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVAN 250
VL + V IT+L+ K GL+N+DFADVR+VM+ G A+MG G ASG R +A E A+ +
Sbjct: 187 DVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNS 246
Query: 251 PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVI 310
PLLD+ ++G++G LI+ITGG DLTL EV+EA RI+E +D +A++I GA D L +
Sbjct: 247 PLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEV 306
Query: 311 RVSVVATGIENR 322
RV V+ATGI +
Sbjct: 307 RVLVIATGIRSS 318
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells..
Length = 303
Score = 280 bits (719), Expect = 5e-76
Identities = 121/303 (39%), Positives = 170/303 (56%), Gaps = 1/303 (0%)
Query: 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAG 75
+I V G GG GGN V+ + +G + V NTDAQ L+ +A+ + +G T+GLGAG
Sbjct: 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAG 61
Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135
++PE+G AAEE + I + M F+TAG+GGGTGTG AP++A+ + G LTV VV
Sbjct: 62 ANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVV 121
Query: 136 TKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYS 195
T PF EG RM A G + L VD L+VIPN+ L +I +K + AF AD+VL
Sbjct: 122 TLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG-EKASLEGAFDHADEVLVR 180
Query: 196 GVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDE 255
V + + EG IN+DFADV++VM G AM+G G R +A A PLL
Sbjct: 181 AVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLLP 240
Query: 256 ASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVV 315
++G++G L+ + G DL L E++ + E+ A + G D A + VS+V
Sbjct: 241 CEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIV 300
Query: 316 ATG 318
TG
Sbjct: 301 LTG 303
>gnl|CDD|143872 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerize into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 160 bits (407), Expect = 9e-40
Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 38/210 (18%)
Query: 17 ITVFGVGGGGGNAVNNMV----------------------------SSGLQGVNFVVANT 48
I V GVGG G N N + G+ G F+ +T
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDT 60
Query: 49 DAQALMMSKAKQIIQLGSGITEGL-GAGSHPEVGR----AAAEECIDEITEML---DKTH 100
D Q L KA + +G+ +T+GL GAG++P VG AAEE ++EI + L D
Sbjct: 61 DPQVLNEIKAGNKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDGLD 120
Query: 101 MCFVTAGMGGGTGTGAAPIIAKIARNK-GVLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159
F+TAG+GGGTG+GAAP+IA+I + G LTV VVT PF EG R A G++ L E
Sbjct: 121 GFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKELIE 180
Query: 160 TVDTLIVIPNQNLFRIANDKTTFA-DAFSM 188
D++IVI N L I +++ AF
Sbjct: 181 HSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts..
Length = 328
Score = 85.2 bits (211), Expect = 3e-17
Identities = 62/337 (18%), Positives = 115/337 (34%), Gaps = 45/337 (13%)
Query: 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK---QIIQLGSGITEGLG 73
I +G G V+ +T+ + + + + +G IT G G
Sbjct: 2 IVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGG 55
Query: 74 AGSHPEVGRAAAEECI-DEITEMLDKT-------HMCFVTAGMGGGTGTGAAPIIAKIAR 125
AG++ G A E +EI +++ K F+T +GGGTG+G P++A+ +
Sbjct: 56 AGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLK 115
Query: 126 ----NKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRI-ANDKT 180
+ +T ++ P R + L E D L+VI N+ LF I
Sbjct: 116 DEYPKRLKITFSILPGPDEGVIVRPYNSIL-TLHTLTEHSDCLVVIDNEALFDICPRPLH 174
Query: 181 TFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRG 240
F +++L + +S +T + +G +N+D ++ + R G+
Sbjct: 175 IDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLM---VGYAPL 231
Query: 241 IQAAEAAVANPLLDEASMKGSQGLLISI-----TGGSDLTLF---------EVDEAATRI 286
A + E + + + GG L EV E R+
Sbjct: 232 DSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARV 291
Query: 287 REEVD----SEANIILGATFDEALEGVI-RVSVVATG 318
S I +G + +++
Sbjct: 292 APRTSHLSWSPPGIKVGVSPTPPASEHKVSALLLSNS 328
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells..
Length = 349
Score = 83.6 bits (207), Expect = 1e-16
Identities = 74/335 (22%), Positives = 115/335 (34%), Gaps = 55/335 (16%)
Query: 16 RITVFGVGGGGG------NAVNNMVSSGLQGVNFVVANTDAQALMMSK---AKQIIQLGS 66
R+ + GVG GG N + G + NT L K A+ I +G
Sbjct: 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAI-NTAKNDLKGLKHIPAEDRILIGQ 60
Query: 67 GITEGLGAGSHPEVGRAAAEECIDEITEMLDK-----THMCFVTAGMGGGTGTGAAPIIA 121
+G G G+ E+G AEE ++E+ +D V AG+GGGTG+G AP++A
Sbjct: 61 SEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLA 120
Query: 122 K-IARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKT 180
K + + P EG R A ++AL E D +I+ N R
Sbjct: 121 KELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKGESVE 180
Query: 181 TFADAFSMADQVLYSGVSCITDLM--------IKEGLINLDFADVRSVMRNMGRAMMGTG 232
+A+ ++ + I L+ G LD ++V + + G A +G
Sbjct: 181 ---EAYDRINEEI---ARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGY- 233
Query: 233 EASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDS 292
A + + + + E+ +RI
Sbjct: 234 --------------ARED--------LETGPSDGKFRLREEDDEVDEKESISRITTLARK 271
Query: 293 EANIILGATFDEALEGVIRVSVVATGIENRLHRDG 327
A L T L R +V G L R G
Sbjct: 272 AAYGEL--TVPCDLTSADRALIVIAGPPEELSRKG 304
>gnl|CDD|34628 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 28.7 bits (64), Expect = 3.5
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMC---FVTAGMGGGTGTG-AAPIIAKIAR---N 126
A H VG+ ++ +D I D + +GGGTG+G + ++ ++
Sbjct: 102 ARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161
Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAESGIE---------ALQETVDTLIVIPNQNLFRIAN 177
K LT V P +V++ +E L E D V+ N+ L+ I
Sbjct: 162 KIKLTFSVFPAP---------KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICR 212
Query: 178 D-----KTTFADAFSMADQVLYSGVSCI 200
++ D + V+ S + +
Sbjct: 213 RNLRIQNPSYDDLNQLISTVMSSVTTSL 240
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis..
Length = 379
Score = 28.4 bits (64), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 68 ITEGLGAGSHPEVG--------RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTG 115
+T+ GAG++ VG + E I + E D F+ +GGGTG+G
Sbjct: 60 VTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSG 115
>gnl|CDD|107322 cd06327, PBP1_SBP_like_1, Periplasmic solute-binding domain of
active transport proteins that belong to the type I
periplasmic binding fold protein family. Periplasmic
solute-binding domain of active transport proteins that
belong to the type I periplasmic binding fold protein
family. Solute binding proteins are the primary specific
receptors that initiate uptake of a broad range of
solutes, including amino acids, peptides and inorganic
ions. The members are predicted to have a similar
function to an active transport system for short chain
amides and urea by sequence comparison and phylogenetic
analysis. Moreover, this binding domain has high
sequence identity to the family of hydrophobic amino
acid transporters (HAAT), and thus may also be involved
in transport of amino acids.
Length = 334
Score = 28.3 bits (64), Expect = 4.8
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 78 PEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132
+V A A E ID D M + GG + A + ++AR K + +
Sbjct: 51 ADVAAAKAREWIDR-----DGVDM------IVGGPNSAVALAVQEVAREKKKIYI 94
>gnl|CDD|38183 KOG2972, KOG2972, KOG2972, Uncharacterized conserved protein
[Function unknown].
Length = 276
Score = 28.4 bits (63), Expect = 5.2
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 170 QNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMM 229
+N A+ K A F + + SGV I + + N + +RS+ G A
Sbjct: 95 ENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDN--KNRAASSIRSIFNKHGGASA 152
Query: 230 GTG 232
Sbjct: 153 SGV 155
>gnl|CDD|38740 KOG3532, KOG3532, KOG3532, Predicted protein kinase [General
function prediction only].
Length = 1051
Score = 28.2 bits (62), Expect = 5.9
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 356 VEDSHVMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVVPESSAPHRLISRQ 415
+E S + + E +CT E +N Q+ L+ + S+P L+ +
Sbjct: 336 LECSRLKDKNKNYE-VYCTVTIESRPIVQNEEQDSQHVVNVLDTFSRYDVSSPIGLVFDK 394
Query: 416 RHSDSVE 422
+ +V+
Sbjct: 395 NTNRAVK 401
>gnl|CDD|99750 cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of
mainly bacterial proteins, with a few members found in
fungi, plants, and archaea. Escherichia coli YdcF has
been shown to bind S-adenosyl-L-methionine (AdoMet), but
a biochemical function has not been idenitified. The
family also includes Escherichia coli sanA and
Salmonella typhimurium sfiX, which are involved in
vancomycin resistance; sfiX may also be involved in
murein synthesis..
Length = 150
Score = 28.0 bits (63), Expect = 6.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 121 AKIARNKGVLTVGVVTKPFH 140
A++ R +G+ +V +VT +H
Sbjct: 87 AELLRERGIRSVLLVTSAYH 106
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 27.9 bits (63), Expect = 6.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 15/53 (28%)
Query: 271 GSDLTLFEVDE--------AATRIREEVDSEANIILGATFD--EALEG---VI 310
GS + L ++DE A +I EE+ + I AT D EAL+G VI
Sbjct: 29 GSTIALMDIDEERLETVEILAKKIVEELGAPLKIE--ATTDRREALDGADFVI 79
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.314 0.131 0.361
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,539,669
Number of extensions: 287937
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 31
Length of query: 502
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 404
Effective length of database: 4,146,055
Effective search space: 1675006220
Effective search space used: 1675006220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)