RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str. psy62] (502 letters) >gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.. Length = 304 Score = 479 bits (1236), Expect = e-136 Identities = 188/304 (61%), Positives = 231/304 (75%) Query: 15 PRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGA 74 +I V GVGGGGGNAVN M+ SGL+GV F+ ANTDAQAL SKA IQLG +T GLGA Sbjct: 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGA 60 Query: 75 GSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGV 134 G PEVGR AAEE +EI E L+ M F+TAGMGGGTGTGAAP+IAKIA+ G LTV V Sbjct: 61 GGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAV 120 Query: 135 VTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLY 194 VTKPF FEG +RMR AE G+E L++ VDTLIVIPN L + + +AF +AD VL Sbjct: 121 VTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLEAFKLADDVLA 180 Query: 195 SGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLD 254 V I+DL+ K GLINLDFADV++VM+N G A+MG GEASG R I+AAE A+++PLL+ Sbjct: 181 QAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLE 240 Query: 255 EASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSV 314 + S+ G++G+L++ITGGSDLTL EV+EAA I+E+VD +ANII GAT DE+LE IRV+V Sbjct: 241 DDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTV 300 Query: 315 VATG 318 +ATG Sbjct: 301 IATG 304 >gnl|CDD|30555 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome partitioning]. Length = 338 Score = 378 bits (973), Expect = e-105 Identities = 181/312 (58%), Positives = 224/312 (71%), Gaps = 1/312 (0%) Query: 11 TELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITE 70 LK RI V GVGG GGNAVN M+ G++GV F+ NTDAQAL SKA + I +G IT Sbjct: 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITR 67 Query: 71 GLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVL 130 GLGAG++PEVGRAAAEE I+EI E L M FVTAGMGGGTGTGAAP++A+IA+ G L Sbjct: 68 GLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGAL 127 Query: 131 TVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMAD 190 TV VVT PF FEGS RM AE GIE L+E VDTLIVIPN L + DKT A+AF+ AD Sbjct: 128 TVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK-DKTPIAEAFNEAD 186 Query: 191 QVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVAN 250 VL + V IT+L+ K GL+N+DFADVR+VM+ G A+MG G ASG R +A E A+ + Sbjct: 187 DVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNS 246 Query: 251 PLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVI 310 PLLD+ ++G++G LI+ITGG DLTL EV+EA RI+E +D +A++I GA D L + Sbjct: 247 PLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEV 306 Query: 311 RVSVVATGIENR 322 RV V+ATGI + Sbjct: 307 RVLVIATGIRSS 318 >gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.. Length = 303 Score = 280 bits (719), Expect = 5e-76 Identities = 121/303 (39%), Positives = 170/303 (56%), Gaps = 1/303 (0%) Query: 16 RITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAG 75 +I V G GG GGN V+ + +G + V NTDAQ L+ +A+ + +G T+GLGAG Sbjct: 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAG 61 Query: 76 SHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTVGVV 135 ++PE+G AAEE + I + M F+TAG+GGGTGTG AP++A+ + G LTV VV Sbjct: 62 ANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVV 121 Query: 136 TKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVLYS 195 T PF EG RM A G + L VD L+VIPN+ L +I +K + AF AD+VL Sbjct: 122 TLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG-EKASLEGAFDHADEVLVR 180 Query: 196 GVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRGIQAAEAAVANPLLDE 255 V + + EG IN+DFADV++VM G AM+G G R +A A PLL Sbjct: 181 AVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLLP 240 Query: 256 ASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGATFDEALEGVIRVSVV 315 ++G++G L+ + G DL L E++ + E+ A + G D A + VS+V Sbjct: 241 CEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIV 300 Query: 316 ATG 318 TG Sbjct: 301 LTG 303 >gnl|CDD|143872 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. Length = 210 Score = 160 bits (407), Expect = 9e-40 Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 38/210 (18%) Query: 17 ITVFGVGGGGGNAVNNMV----------------------------SSGLQGVNFVVANT 48 I V GVGG G N N + G+ G F+ +T Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDT 60 Query: 49 DAQALMMSKAKQIIQLGSGITEGL-GAGSHPEVGR----AAAEECIDEITEML---DKTH 100 D Q L KA + +G+ +T+GL GAG++P VG AAEE ++EI + L D Sbjct: 61 DPQVLNEIKAGNKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDGLD 120 Query: 101 MCFVTAGMGGGTGTGAAPIIAKIARNK-GVLTVGVVTKPFHFEGSRRMRVAESGIEALQE 159 F+TAG+GGGTG+GAAP+IA+I + G LTV VVT PF EG R A G++ L E Sbjct: 121 GFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKELIE 180 Query: 160 TVDTLIVIPNQNLFRIANDKTTFA-DAFSM 188 D++IVI N L I +++ AF Sbjct: 181 HSDSVIVIDNDALLEICDNQLDIKSPAFKN 210 >gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.. Length = 328 Score = 85.2 bits (211), Expect = 3e-17 Identities = 62/337 (18%), Positives = 115/337 (34%), Gaps = 45/337 (13%) Query: 17 ITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAK---QIIQLGSGITEGLG 73 I +G G V+ +T+ + + + + +G IT G G Sbjct: 2 IVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGG 55 Query: 74 AGSHPEVGRAAAEECI-DEITEMLDKT-------HMCFVTAGMGGGTGTGAAPIIAKIAR 125 AG++ G A E +EI +++ K F+T +GGGTG+G P++A+ + Sbjct: 56 AGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLK 115 Query: 126 ----NKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRI-ANDKT 180 + +T ++ P R + L E D L+VI N+ LF I Sbjct: 116 DEYPKRLKITFSILPGPDEGVIVRPYNSIL-TLHTLTEHSDCLVVIDNEALFDICPRPLH 174 Query: 181 TFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRG 240 F +++L + +S +T + +G +N+D ++ + R G+ Sbjct: 175 IDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLM---VGYAPL 231 Query: 241 IQAAEAAVANPLLDEASMKGSQGLLISI-----TGGSDLTLF---------EVDEAATRI 286 A + E + + + GG L EV E R+ Sbjct: 232 DSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARV 291 Query: 287 REEVD----SEANIILGATFDEALEGVI-RVSVVATG 318 S I +G + +++ Sbjct: 292 APRTSHLSWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 >gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.. Length = 349 Score = 83.6 bits (207), Expect = 1e-16 Identities = 74/335 (22%), Positives = 115/335 (34%), Gaps = 55/335 (16%) Query: 16 RITVFGVGGGGG------NAVNNMVSSGLQGVNFVVANTDAQALMMSK---AKQIIQLGS 66 R+ + GVG GG N + G + NT L K A+ I +G Sbjct: 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAI-NTAKNDLKGLKHIPAEDRILIGQ 60 Query: 67 GITEGLGAGSHPEVGRAAAEECIDEITEMLDK-----THMCFVTAGMGGGTGTGAAPIIA 121 +G G G+ E+G AEE ++E+ +D V AG+GGGTG+G AP++A Sbjct: 61 SEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLA 120 Query: 122 K-IARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKT 180 K + + P EG R A ++AL E D +I+ N R Sbjct: 121 KELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKGESVE 180 Query: 181 TFADAFSMADQVLYSGVSCITDLM--------IKEGLINLDFADVRSVMRNMGRAMMGTG 232 +A+ ++ + I L+ G LD ++V + + G A +G Sbjct: 181 ---EAYDRINEEI---ARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGY- 233 Query: 233 EASGHGRGIQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDS 292 A + + + + E+ +RI Sbjct: 234 --------------ARED--------LETGPSDGKFRLREEDDEVDEKESISRITTLARK 271 Query: 293 EANIILGATFDEALEGVIRVSVVATGIENRLHRDG 327 A L T L R +V G L R G Sbjct: 272 AAYGEL--TVPCDLTSADRALIVIAGPPEELSRKG 304 >gnl|CDD|34628 COG5023, COG5023, Tubulin [Cytoskeleton]. Length = 443 Score = 28.7 bits (64), Expect = 3.5 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 30/148 (20%) Query: 74 AGSHPEVGRAAAEECIDEITEMLDKTHMC---FVTAGMGGGTGTG-AAPIIAKIAR---N 126 A H VG+ ++ +D I D + +GGGTG+G + ++ ++ Sbjct: 102 ARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161 Query: 127 KGVLTVGVVTKPFHFEGSRRMRVAESGIE---------ALQETVDTLIVIPNQNLFRIAN 177 K LT V P +V++ +E L E D V+ N+ L+ I Sbjct: 162 KIKLTFSVFPAP---------KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICR 212 Query: 178 D-----KTTFADAFSMADQVLYSGVSCI 200 ++ D + V+ S + + Sbjct: 213 RNLRIQNPSYDDLNQLISTVMSSVTTSL 240 >gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.. Length = 379 Score = 28.4 bits (64), Expect = 4.4 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Query: 68 ITEGLGAGSHPEVG--------RAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTG 115 +T+ GAG++ VG + E I + E D F+ +GGGTG+G Sbjct: 60 VTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSG 115 >gnl|CDD|107322 cd06327, PBP1_SBP_like_1, Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids. Length = 334 Score = 28.3 bits (64), Expect = 4.8 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 11/55 (20%) Query: 78 PEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPIIAKIARNKGVLTV 132 +V A A E ID D M + GG + A + ++AR K + + Sbjct: 51 ADVAAAKAREWIDR-----DGVDM------IVGGPNSAVALAVQEVAREKKKIYI 94 >gnl|CDD|38183 KOG2972, KOG2972, KOG2972, Uncharacterized conserved protein [Function unknown]. Length = 276 Score = 28.4 bits (63), Expect = 5.2 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 170 QNLFRIANDKTTFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMM 229 +N A+ K A F + + SGV I + + N + +RS+ G A Sbjct: 95 ENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDN--KNRAASSIRSIFNKHGGASA 152 Query: 230 GTG 232 Sbjct: 153 SGV 155 >gnl|CDD|38740 KOG3532, KOG3532, KOG3532, Predicted protein kinase [General function prediction only]. Length = 1051 Score = 28.2 bits (62), Expect = 5.9 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 356 VEDSHVMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVVPESSAPHRLISRQ 415 +E S + + E +CT E +N Q+ L+ + S+P L+ + Sbjct: 336 LECSRLKDKNKNYE-VYCTVTIESRPIVQNEEQDSQHVVNVLDTFSRYDVSSPIGLVFDK 394 Query: 416 RHSDSVE 422 + +V+ Sbjct: 395 NTNRAVK 401 >gnl|CDD|99750 cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.. Length = 150 Score = 28.0 bits (63), Expect = 6.5 Identities = 7/20 (35%), Positives = 14/20 (70%) Query: 121 AKIARNKGVLTVGVVTKPFH 140 A++ R +G+ +V +VT +H Sbjct: 87 AELLRERGIRSVLLVTSAYH 106 >gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. Glucosidases cleave glycosidic bonds to release glucose from oligosaccharides. Alpha-glucosidases and alpha-galactosidases release alpha-D-glucose and alpha-D-galactose, respectively, via the hydrolysis of alpha-glycopyranoside bonds. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the alpha-glucosidases. Other organsisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. Alpha-glucosidases and alpha-galactosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 423 Score = 27.9 bits (63), Expect = 6.7 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 15/53 (28%) Query: 271 GSDLTLFEVDE--------AATRIREEVDSEANIILGATFD--EALEG---VI 310 GS + L ++DE A +I EE+ + I AT D EAL+G VI Sbjct: 29 GSTIALMDIDEERLETVEILAKKIVEELGAPLKIE--ATTDRREALDGADFVI 79 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.314 0.131 0.361 Gapped Lambda K H 0.267 0.0800 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,539,669 Number of extensions: 287937 Number of successful extensions: 644 Number of sequences better than 10.0: 1 Number of HSP's gapped: 634 Number of HSP's successfully gapped: 31 Length of query: 502 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 404 Effective length of database: 4,146,055 Effective search space: 1675006220 Effective search space used: 1675006220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (26.4 bits)