BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781176|ref|YP_003065589.1| cell division protein FtsZ
[Candidatus Liberibacter asiaticus str. psy62]
         (502 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/502 (100%), Positives = 502/502 (100%)

Query: 1   MVGKNANMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQ 60
           MVGKNANMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQ
Sbjct: 1   MVGKNANMDITELKPRITVFGVGGGGGNAVNNMVSSGLQGVNFVVANTDAQALMMSKAKQ 60

Query: 61  IIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPII 120
           IIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPII
Sbjct: 61  IIQLGSGITEGLGAGSHPEVGRAAAEECIDEITEMLDKTHMCFVTAGMGGGTGTGAAPII 120

Query: 121 AKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKT 180
           AKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKT
Sbjct: 121 AKIARNKGVLTVGVVTKPFHFEGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKT 180

Query: 181 TFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRG 240
           TFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRG
Sbjct: 181 TFADAFSMADQVLYSGVSCITDLMIKEGLINLDFADVRSVMRNMGRAMMGTGEASGHGRG 240

Query: 241 IQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGA 300
           IQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGA
Sbjct: 241 IQAAEAAVANPLLDEASMKGSQGLLISITGGSDLTLFEVDEAATRIREEVDSEANIILGA 300

Query: 301 TFDEALEGVIRVSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSH 360
           TFDEALEGVIRVSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSH
Sbjct: 301 TFDEALEGVIRVSVVATGIENRLHRDGDDNRDSSLTTHESLKNAKFLNLSSPKLPVEDSH 360

Query: 361 VMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVVPESSAPHRLISRQRHSDS 420
           VMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVVPESSAPHRLISRQRHSDS
Sbjct: 361 VMHHSVIAENAHCTDNQEDLNNQENSLVGDQNQELFLEEDVVPESSAPHRLISRQRHSDS 420

Query: 421 VEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQS 480
           VEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQS
Sbjct: 421 VEERGVMALIKRIAHSFGLHENIASEEDSVHMKSESTVSYLRERNPSISEESIDDFCVQS 480

Query: 481 KPTVKCEEDKLEIPAFLRRQSH 502
           KPTVKCEEDKLEIPAFLRRQSH
Sbjct: 481 KPTVKCEEDKLEIPAFLRRQSH 502


>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 30  VNNMVSSGLQGVNFVVANTDAQALMMSKAKQIIQLGSGITEGLGAGSHPEVGRAAA 85
           +NN  +   +G  F   N D + +           G  ++E +G  S P+VG   A
Sbjct: 398 INNNATLHAKGQYFCFLNNDTEVIN----------GQWLSEMMGIASQPQVGAVGA 443


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,961
Number of Sequences: 1233
Number of extensions: 12593
Number of successful extensions: 38
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 7
length of query: 502
length of database: 328,796
effective HSP length: 78
effective length of query: 424
effective length of database: 232,622
effective search space: 98631728
effective search space used: 98631728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 40 (20.0 bits)