HHsearch alignment for GI: 254781177 and conserved domain: TIGR00241
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative; InterPro: IPR008275 This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from Methanococcus jannaschii and Methanobacterium thermoautotrophicum that share an additonal N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterised protein of Aquifex aeolicus. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. .
Probab=95.21 E-value=0.12 Score=29.14 Aligned_cols=148 Identities=24% Similarity=0.370 Sum_probs=90.1
Q ss_pred EEEEEECCCCEEEEEEE-CCCCEEE---EEECCCHHHHHHHHHHHCCCCHHHHHHHHHH--CCCCC----CCCCCCHHCC
Q ss_conf 79999537715578840-3530245---3102422775088886334523678887642--57403----3555300001
Q gi|254781177|r 231 SVVIDMGGGTTKIAIFD-KGKLVYM---DVIAIGGSHVTNDLARGLSISLDNAERLKVM--HPSII----PSLADEHDIL 300 (440)
Q Consensus 231 v~iIDiGa~tT~i~i~~-~g~l~~~---~~i~iGG~~iT~DIa~~l~i~~~eAE~lK~~--~G~a~----~~~~~~~~~i 300 (440)
T Consensus 100 ~~~~d~gg~d~~~~~~~~~g~~~~~~~~~~c~~~~g~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~ 179 (259)
T TIGR00241 100 ATVIDIGGQDSKVIALDDDGKPDDFLLGDKCAAGTGRFLEVTARRLGLSVEELGSLAEKGAWRKAKLSSYCTVFAESELI 179 (259)
T ss_pred EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 13664077764046640567401000044101343057988899844444563223320331024432333434356788
Q ss_pred CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC-CCEEE
Q ss_conf 22335788765304338999999999999999998888764068644577439997323444578999999838-97599
Q gi|254781177|r 301 SIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETIC-SNVRM 379 (440)
Q Consensus 301 ~~~~~~~~~~~~~~~i~~~~l~~II~~Rv~ei~~~i~~~l~~~~~~~~~~~~IvLtGGgs~l~gl~~~~~~~~~-~~vri 379 (440)
T Consensus 180 ~~~~~g--------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~ 244 (259)
T TIGR00241 180 SLLAAG--------VKPEDILAGVYESVAERVAEQ---QLQRLDV----EPPIVLTGGVSKNKGLVKALEKELGGLKVLT 244 (259)
T ss_pred HHHHCC--------CCHHHHHHHHHHHHHHHHHHH---HHHHCCC----CCCEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 876404--------644678999999998878888---8763012----3550220524677899999998746731115
Q ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf 71433478212223723799999999
Q gi|254781177|r 380 GRPIGAVGLPFSARSPAFSTVIGLMI 405 (440)
Q Consensus 380 ~~P~~~~g~~~~~~~p~~sta~Gl~~ 405 (440)
T Consensus 245 --p----------~~~~~~g~~g~~~ 258 (259)
T TIGR00241 245 --P----------PEPQLVGAVGAAL 258 (259)
T ss_pred --C----------CCHHHHHHHHHHC
T ss_conf --7----------5213443222222