HHsearch alignment for GI: 254781177 and conserved domain: TIGR00241

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative; InterPro: IPR008275 This domain is found in a set of closely related proteins including the (R)-2-hydroxyglutaryl-CoA dehydratase activase of Acidaminococcus fermentans, in longer proteins from Methanococcus jannaschii and Methanobacterium thermoautotrophicum that share an additonal N-terminal domain, in a protein described as a subunit of the benzoyl-CoA reductase of Rhodopseudomonas palustris, and in two repeats of an uncharacterised protein of Aquifex aeolicus. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. .
Probab=95.21  E-value=0.12  Score=29.14  Aligned_cols=148  Identities=24%  Similarity=0.370  Sum_probs=90.1

Q ss_pred             EEEEEECCCCEEEEEEE-CCCCEEE---EEECCCHHHHHHHHHHHCCCCHHHHHHHHHH--CCCCC----CCCCCCHHCC
Q ss_conf             79999537715578840-3530245---3102422775088886334523678887642--57403----3555300001
Q gi|254781177|r  231 SVVIDMGGGTTKIAIFD-KGKLVYM---DVIAIGGSHVTNDLARGLSISLDNAERLKVM--HPSII----PSLADEHDIL  300 (440)
Q Consensus       231 v~iIDiGa~tT~i~i~~-~g~l~~~---~~i~iGG~~iT~DIa~~l~i~~~eAE~lK~~--~G~a~----~~~~~~~~~i  300 (440)
T Consensus       100 ~~~~d~gg~d~~~~~~~~~g~~~~~~~~~~c~~~~g~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~  179 (259)
T TIGR00241       100 ATVIDIGGQDSKVIALDDDGKPDDFLLGDKCAAGTGRFLEVTARRLGLSVEELGSLAEKGAWRKAKLSSYCTVFAESELI  179 (259)
T ss_pred             EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             13664077764046640567401000044101343057988899844444563223320331024432333434356788


Q ss_pred             CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC-CCEEE
Q ss_conf             22335788765304338999999999999999998888764068644577439997323444578999999838-97599
Q gi|254781177|r  301 SIPTIGNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGASQVIGLQEMLRETIC-SNVRM  379 (440)
Q Consensus       301 ~~~~~~~~~~~~~~~i~~~~l~~II~~Rv~ei~~~i~~~l~~~~~~~~~~~~IvLtGGgs~l~gl~~~~~~~~~-~~vri  379 (440)
T Consensus       180 ~~~~~g--------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~  244 (259)
T TIGR00241       180 SLLAAG--------VKPEDILAGVYESVAERVAEQ---QLQRLDV----EPPIVLTGGVSKNKGLVKALEKELGGLKVLT  244 (259)
T ss_pred             HHHHCC--------CCHHHHHHHHHHHHHHHHHHH---HHHHCCC----CCCEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             876404--------644678999999998878888---8763012----3550220524677899999998746731115


Q ss_pred             ECCCCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf             71433478212223723799999999
Q gi|254781177|r  380 GRPIGAVGLPFSARSPAFSTVIGLMI  405 (440)
Q Consensus       380 ~~P~~~~g~~~~~~~p~~sta~Gl~~  405 (440)
T Consensus       245 --p----------~~~~~~g~~g~~~  258 (259)
T TIGR00241       245 --P----------PEPQLVGAVGAAL  258 (259)
T ss_pred             --C----------CCHHHHHHHHHHC
T ss_conf             --7----------5213443222222