HHsearch alignment for GI: 254781177 and conserved domain: cd00012
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.42 E-value=1e-10 Score=82.57 Aligned_cols=208 Identities=18% Similarity=0.212 Sum_probs=117.8
Q ss_pred CHHHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEE--EEECCCHHHHH
Q ss_conf 1368888998-76532331123332102345531243345550799995377155788403530245--31024227750
Q gi|254781177|r 189 EKSSMKNLER-AINRAHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYM--DVIAIGGSHVT 265 (440)
Q Consensus 189 ~~~~i~~~~~-~i~~~gl~v~~i~~~p~Asa~a~L~~~ek~~Gv~iIDiGa~tT~i~i~~~g~l~~~--~~i~iGG~~iT 265 (440)
T Consensus 107 ~~~~r~~~~e~lFE~~~vp~v~~~~~~~la~y~~g-----~~tglVVDiG~~~T~v~pV~dG~~~~~~~~~~~~gG~~l~ 181 (371)
T cd00012 107 PKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG-----RTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLT 181 (371)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCC-----CCEEEEEECCCCCEEEEEEECCEECHHHEEEEECHHHHHH
T ss_conf 89999999999997669987999650544256549-----9628999879994688876666981225299836399999
Q ss_pred HHHHHHCCC---------CHHHHHHHHHHCCCCCCCCCCCHH-----------CCCCCCCCCCCCCCEEECC--HHHHHH
Q ss_conf 888863345---------236788876425740335553000-----------0122335788765304338--999999
Q gi|254781177|r 266 NDLARGLSI---------SLDNAERLKVMHPSIIPSLADEHD-----------ILSIPTIGNADHNDLVQVS--RAMISR 323 (440)
Q Consensus 266 ~DIa~~l~i---------~~~eAE~lK~~~G~a~~~~~~~~~-----------~i~~~~~~~~~~~~~~~i~--~~~l~~ 323 (440)
T Consensus 182 ~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lPd------g~~i~~~~er~~~~E 255 (371)
T cd00012 182 RYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD------GRTIKVGNERFRAPE 255 (371)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEECCCHHHHHHHHCCCCCCCCCEEECCC------CCEEEECCHHHHCHH
T ss_conf 99999999739998836779999999875232158778888652137776754168899------978873733641836
Q ss_pred HHH-HHH-----HHHHHHHHHHHHHCC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEE--CCCCCCCCHHHHC
Q ss_conf 999-999-----999998888764068--644577439997323444578999999838975997--1433478212223
Q gi|254781177|r 324 IIQ-ARI-----EETFELIGERIKKSG--FSSLASKRIVLTGGASQVIGLQEMLRETICSNVRMG--RPIGAVGLPFSAR 393 (440)
Q Consensus 324 II~-~Rv-----~ei~~~i~~~l~~~~--~~~~~~~~IvLtGGgs~l~gl~~~~~~~~~~~vri~--~P~~~~g~~~~~~ 393 (440)
T Consensus 256 ~lF~P~~~~~~~~gl~~~i~~si~~~~~d~r~~L~~nIvl~GG~S~~~G~~~RL~~eL~~~~p~~~~~~v~~~----~~~ 331 (371)
T cd00012 256 ILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVI----APP 331 (371)
T ss_pred HHCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC----CCC
T ss_conf 4189434588667789999999985999999877728899553136737899999999965887678248757----899
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 723799999999775221
Q gi|254781177|r 394 SPAFSTVIGLMIYPQLIA 411 (440)
Q Consensus 394 ~p~~sta~Gl~~~~~~~~ 411 (440)
T Consensus 332 ~~~~~aW~GgSilasl~~ 349 (371)
T cd00012 332 ERKYSVWLGGSILASLST 349 (371)
T ss_pred CCCEEEEHHHHHHHCCCC
T ss_conf 888488430788777844