HHsearch alignment for GI: 254781177 and conserved domain: pfam07520

>pfam07520 SrfB Virulence factor SrfB. This family includes homologues of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is SrfB. Homologues are found in several other proteobacteria.

Probab=98.41  E-value=1e-05  Score=53.12  Aligned_cols=56  Identities=23%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCE-EEE----------CCCCCCCCHHHHCCCHHHHHHHHHHH
Q ss_conf             577439997323444578999999838975-997----------14334782122237237999999997
Q gi|254781177|r  348 LASKRIVLTGGASQVIGLQEMLRETICSNV-RMG----------RPIGAVGLPFSARSPAFSTVIGLMIY  406 (440)
Q Consensus       348 ~~~~~IvLtGGgs~l~gl~~~~~~~~~~~v-ri~----------~P~~~~g~~~~~~~p~~sta~Gl~~~  406 (440)
T Consensus       766 y~CDVlLLTGRPSrlPgv~al~r~~~pvpp~Riv~l~~Y~tg~WYPF~~~g---rI~dPKtTaaVGAMLc  832 (999)
T pfam07520       766 YDCDVLLLTGRPSRLPGVQALFRHLQPLPPDRIVPLHGYRTGNWYPFRKQG---RIDDPKTTAAVGAMLC  832 (999)
T ss_pred             HCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHH
T ss_conf             589989966986667789999997379994307772771217704688888---7699617799999999