HHsearch alignment for GI: 254781177 and conserved domain: pfam08841
>pfam08841 DDR Diol dehydratase reactivase ATPase-like domain. Diol dehydratase (DDH, EC:4.2.1.28) and its isofunctional homologue glycerol dehydratase (GDH, EC.4.2.1.30) are enzymes which catalyse the conversion of glycerol 1,2-propanediol, and 1,2-ethanediol to aldehydes. These reactions require coenzyme B12. Cleavage of the Co-C bond of coenzyme B12 by substrates or coenzyme analogues results in inactivation during which coenzyme B12 remains tightly bound to the apoenzyme. This family comprises of the large subunit of the diol dehydratase and glycerol dehydratase reactivating factors whose function is to reactivate the holoenzyme by exchange of a damaged cofactor for intact coenzyme.
Probab=99.25 E-value=7.8e-10 Score=77.30 Aligned_cols=212 Identities=19% Similarity=0.227 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCHHHHHH
Q ss_conf 3136888899876-532331123332102345531243345550799995377155788403530245310242277508
Q gi|254781177|r 188 VEKSSMKNLERAI-NRAHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTN 266 (440)
Q Consensus 188 ~~~~~i~~~~~~i-~~~gl~v~~i~~~p~Asa~a~L~~~ek~~Gv~iIDiGa~tT~i~i~~~g~l~~~~~i~iGG~~iT~ 266 (440)
T Consensus 92 s~~l~m~~iA~~l~~~~g~~v~igg~EaemAi~GAlTTPGt~~plaIlDlGaGStDasii~~~g~v~a~HlAGAG~mVTm 171 (332)
T pfam08841 92 ADHLQMAIIAAELEEELGVPVEIGGVEAEAAILGALTTPGTPKPLAILDLGAGSTDASIINAEGTVTATHLAGAGEMVTM 171 (332)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 17314999999999986982697450588887403369899998389964898533888288984899974386137599
Q ss_pred HHHHHCCC-CHHHHHHHHHHCCCCCC----CCCCCHHCCCC---CC---C----CCCCCCCEE----ECCHHHHHHHHHH
Q ss_conf 88863345-23678887642574033----55530000122---33---5----788765304----3389999999999
Q gi|254781177|r 267 DLARGLSI-SLDNAERLKVMHPSIIP----SLADEHDILSI---PT---I----GNADHNDLV----QVSRAMISRIIQA 327 (440)
Q Consensus 267 DIa~~l~i-~~~eAE~lK~~~G~a~~----~~~~~~~~i~~---~~---~----~~~~~~~~~----~i~~~~l~~II~~ 327 (440)
T Consensus 172 lI~seLGl~d~~LAE~IKkyP-laKVEslf~irhEDG~v~Ff~~pl~p~~faRvv~~k~~~lvPi~~~~~~Ekir~vRr~ 250 (332)
T pfam08841 172 LINSELGLEDRALAEDIKKYP-LAKVESLFHIRHEDGRVQFFEEPLPPSVFARVVILKEDGLVPLDGDLSIEKIKSVRRS 250 (332)
T ss_pred HHHHHHCCCCHHHHHHHHHCC-HHHHCCCEEEEECCCCEEEECCCCCHHHHEEEEEECCCCEEECCCCCCHHHHHHHHHH
T ss_conf 998864899578898874362-4542344268852772697269899679257899627951416985448999999998
Q ss_pred HHHHHH-HHHHHHHHHCCCCC--CCCCEEEEECCCCCCCCHHHHHHHHH-CCCEEEECCCCCCCCHHHHCCCHHHHHHHH
Q ss_conf 999999-98888764068644--57743999732344457899999983-897599714334782122237237999999
Q gi|254781177|r 328 RIEETF-ELIGERIKKSGFSS--LASKRIVLTGGASQVIGLQEMLRETI-CSNVRMGRPIGAVGLPFSARSPAFSTVIGL 403 (440)
Q Consensus 328 Rv~ei~-~~i~~~l~~~~~~~--~~~~~IvLtGGgs~l~gl~~~~~~~~-~~~vri~~P~~~~g~~~~~~~p~~sta~Gl 403 (440)
T Consensus 251 aK~kVfvtNa~RaL~~vsP~gnir~i~fVVLvGGsALDfEip~~vtdaLs~y~vVaGrg-NIrG----~eGPRnAVAtGL 325 (332)
T pfam08841 251 AKERVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQLVTEALSHYGVVAGRG-NIRG----VEGPRNAVATGL 325 (332)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECC-CCCC----CCCCHHHHHHHH
T ss_conf 64564599899999842988886778759995571442237899999875075234325-6456----767368899998
Q ss_pred HH
Q ss_conf 99
Q gi|254781177|r 404 MI 405 (440)
Q Consensus 404 ~~ 405 (440)
T Consensus 326 vl 327 (332)
T pfam08841 326 VL 327 (332)
T ss_pred HH
T ss_conf 98