HHsearch alignment for GI: 254781178 and conserved domain: TIGR03303

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=97.65  E-value=0.00053  Score=45.40  Aligned_cols=78  Identities=15%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             EEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEEEECC
Q ss_conf             1254899977654898899998088889843887599999998719762279999828981999999303799999579
Q gi|254781178|r   88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNS  166 (304)
Q Consensus        88 F~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~~P~tL~I~I~Er~PvA~~~~~g  166 (304)
T Consensus         1 ~~I~~I~v~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~dv~v~~~-~~~l~i~v~E~p~i~~i~~~G   78 (741)
T TIGR03303         1 FVVKDIRVEGLQRVSAGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIERE-GGVLVIKVKERPIINSIVFSG   78 (741)
T ss_pred             CEEEEEEEECCEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE-CCEEEEEEEECCEEEEEEEEC
T ss_conf             989899999971659899986369999984599999999999996799005899972-999999999676399999999