HHsearch alignment for GI: 254781178 and conserved domain: pfam07244

>pfam07244 Surf_Ag_VNR Surface antigen variable number repeat. This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Probab=93.87  E-value=0.26  Score=28.27  Aligned_cols=69  Identities=19%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             EEEEEEEEECCCC-CCHHHHHHHHCCCCCCCEEEECHHHHHHHHH----CCCC-EEEEEEEEEC-CC--EEEEEEEEE
Q ss_conf             1254899977654-8988999980888898438875999999987----1976-2279999828-98--199999930
Q gi|254781178|r   88 FSIEKVRIIGNVE-TPEADIIHCLDLNTSTSLIFFDAIKIQKQLL----ALPW-IAHAEIRRLY-PD--TMEIRLTER  156 (304)
Q Consensus        88 F~I~~I~V~Gn~~-ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~----~~pw-Ik~a~V~r~~-P~--tL~I~I~Er  156 (304)
T Consensus         1 ~~i~~I~~~Gn~~~~~~~~l~~~~~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg   78 (78)
T pfam07244         1 YKIKDINIEGNLKRTKDEVLRRELKLKEGDVFNREKLEEDIERLYDYYGALGYAFADVKVEPEPDPKTVDLTFNVDEG   78 (78)
T ss_pred             CEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEEECC
T ss_conf             979799999488668999999986358876316999997999999999867976544331771389989999998269