Query gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 304
No_of_seqs 193 out of 1682
Neff 6.5
Searched_HMMs 23785
Date Wed Jun 1 03:31:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781178.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vh2_A FTSQ, cell division pro 100.0 2E-37 8.2E-42 257.0 14.4 206 85-293 23-235 (255)
2 2vh1_A FTSQ, cell division pro 100.0 5E-34 2.1E-38 235.3 21.1 206 90-298 1-217 (220)
3 1yr1_A Divib, FTSQ, cell-divis 98.3 5.2E-06 2.2E-10 56.8 9.7 105 154-258 2-113 (119)
4 2qdf_A OMP85, outer membrane p 97.9 0.00012 5.1E-09 48.1 9.8 82 84-166 4-85 (335)
5 3efc_A OMP85, outer membrane p 97.8 5.3E-05 2.2E-09 50.4 7.5 83 83-166 2-84 (395)
6 3og5_A Outer membrane protein 96.1 0.022 9.3E-07 33.7 7.4 48 88-135 6-57 (166)
7 2x8x_X TLR1789 protein, OMP85; 94.2 0.18 7.7E-06 27.8 7.3 75 86-160 3-80 (235)
8 3og5_A Outer membrane protein 93.1 0.41 1.7E-05 25.6 7.6 71 88-158 87-163 (166)
9 3mc9_A ALR2269 protein; polype 88.9 1.1 4.8E-05 22.8 7.1 80 87-166 61-147 (316)
10 3efc_A OMP85, outer membrane p 82.0 0.22 9.2E-06 27.4 -0.0 73 89-161 76-160 (395)
11 2qdz_A TPSB transporter FHAC; 34.4 20 0.00085 14.8 6.6 70 89-158 135-210 (554)
12 1hi9_A Dciaa, dipeptide transp 24.5 30 0.0013 13.7 4.6 58 88-146 119-178 (274)
13 2i52_A Hypothetical protein; s 24.4 30 0.0013 13.7 2.9 21 124-144 48-68 (121)
14 3cq1_A Putative uncharacterize 21.4 34 0.0014 13.4 3.4 24 122-145 60-83 (103)
No 1
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=100.00 E-value=2e-37 Score=256.96 Aligned_cols=206 Identities=23% Similarity=0.389 Sum_probs=172.6
Q ss_pred HCCEEEEEEEEECC-CCCCHHHHHHH-HCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEE
Q ss_conf 10812548999776-54898899998-08888984388759999999871976227999982898199999930379999
Q gi|254781178|r 85 FIGFSIEKVRIIGN-VETPEADIIHC-LDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIW 162 (304)
Q Consensus 85 ~~gF~I~~I~V~Gn-~~ls~~eIl~~-l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~~P~tL~I~I~Er~PvA~~ 162 (304)
...|+|++|.|+|| .++++++|.++ .++..+.|+|.+|+++++++|+++|||++|+|+|.||++|.|+|+||+|+|+|
T Consensus 23 ~~~l~I~~V~I~G~~~~~~~~~I~~al~~~~~~~ni~~ld~~~i~~~L~~~pwVk~a~V~R~~P~tL~I~V~Er~PvA~~ 102 (255)
T 2vh2_A 23 SSRLPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLVEYVPFARW 102 (255)
T ss_dssp ----CCCEEEEESCCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEETTTEEEEEEEECCCCBBS
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEE
T ss_conf 67773049999788601899999999862258996399879999999970898579999996799179999987766886
Q ss_pred EECCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCHH--HHHHHHHHHHHH-HHHCCCEEEEEEECCCEEEEEECCCEEE
Q ss_conf 957927997056410321-000112454311377667--889999876640-1310330389982588058997498289
Q gi|254781178|r 163 QNNSALYLIDNNGYVITA-FNHVRFAYLPILIGENIY--KAVRSFEVLSNI-AGITKFVKAYNWIAERRWDLHLHNGIII 238 (304)
Q Consensus 163 ~~~g~~~~Id~~G~Vi~~-~~~~~~~~lPli~G~~~~--~~~~~~~~L~~~-~~l~~~i~~~~~v~~rrWdL~l~nGi~I 238 (304)
+..+++|.+|.+|.. .......++|++.|.... .....+..+... +....++.++.+.+.++|++.+++|+.|
T Consensus 103 ---~~~~~id~~G~vi~~~~~~~~~~~lp~i~g~~~~~~~~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~l~l~~g~~V 179 (255)
T 2vh2_A 103 ---NDLHMVDEQGRSFSVPSERVGKQKLPLLYGPEGSEQDVLEGYRAINKVLAANKYQLKMVAMSARHSWQLALDNDVRL 179 (255)
T ss_dssp ---SSSCEECTTCCEECCCSSTTCCSCCCEEECSTTCHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCCEEEECSSSCCC
T ss_pred ---CCCEEEECCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCEEEEEECCCEEE
T ss_conf ---67268841684771263434334573662564208999999999975411121133058974697299994698499
Q ss_pred EECCCCHHHHHHHHHHHHHHH-CHHCCCEEEEEEECCCEEEEEECCCCHHHHHHHH
Q ss_conf 808511799999999987630-1000883389611298369997684215589998
Q gi|254781178|r 239 KLPEEKFDVAIAKILELQNKY-QILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIV 293 (304)
Q Consensus 239 kLp~~~~~~~L~rL~~l~~~~-k~~~r~I~~IDLR~pdri~Vrl~~~a~~~r~~~~ 293 (304)
+||.+++.+++++|.+++.+. +...+.|.||||||+|+++|+|++.+.++.....
T Consensus 180 ~lG~~~~~~kL~rl~~v~~~l~~~~~~~i~~IDLRY~ng~av~~~~~~~~~~~~~~ 235 (255)
T 2vh2_A 180 ELGRDDRMGRLQRFIELYPMLQQQPDKRVSYVDLRYETGAAIGWAPVFIGSQGGEP 235 (255)
T ss_dssp EEESSCCHHHHHHHHHSCSCCCC-CSCCEEEEECCSSSCCEEEECCCCC-------
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCCCCCC
T ss_conf 97861499999999999999987525886299845799839965353566677888
No 2
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=100.00 E-value=5e-34 Score=235.27 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=166.5
Q ss_pred EEEEEEECCC-CCCHHHHHH-HHCCCCCCCEEEECHHHHHHHHH-CCCCEEEEEEEEECCCEEEEEEEEEEEEEEEEECC
Q ss_conf 5489997765-489889999-80888898438875999999987-19762279999828981999999303799999579
Q gi|254781178|r 90 IEKVRIIGNV-ETPEADIIH-CLDLNTSTSLIFFDAIKIQKQLL-ALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNS 166 (304)
Q Consensus 90 I~~I~V~Gn~-~ls~~eIl~-~l~i~~~~sl~~ld~~~i~~~L~-~~pwIk~a~V~r~~P~tL~I~I~Er~PvA~~~~~g 166 (304)
|++|.|+||. .+++++|.+ .+++..++|+|.+|.++++++|+ .+|||++|+|+|.||++|.|+|+||+|+|+|..+
T Consensus 1 l~~i~V~Gn~~~~~~e~I~~~l~~~~~~~~~~~~d~~~l~~~le~~~p~Vk~a~V~r~~P~~l~I~V~Er~Pva~~~~~- 79 (220)
T 2vh1_A 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQ- 79 (220)
T ss_dssp -CEEEEESCCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEETTTEEEEEEEECCEEEEETTT-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEEECC-
T ss_conf 9589996997428999999987520579971451899999998742993779999995898089999960458999326-
Q ss_pred EEEEEECCCCCCC-CCCCCCCCCCCCCCCCCHHH--HHHHHHH-HHHHHHHCCCEEEEEEECCCEEEEEECCCEEEEECC
Q ss_conf 2799705641032-10001124543113776678--8999987-664013103303899825880589974982898085
Q gi|254781178|r 167 ALYLIDNNGYVIT-AFNHVRFAYLPILIGENIYK--AVRSFEV-LSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKLPE 242 (304)
Q Consensus 167 ~~~~Id~~G~Vi~-~~~~~~~~~lPli~G~~~~~--~~~~~~~-L~~~~~l~~~i~~~~~v~~rrWdL~l~nGi~IkLp~ 242 (304)
++++.+|.++. +.......++|++.|..... ....+.. .....+...++.++.+.+.++|++++++|+.|+||.
T Consensus 80 --~~~~~~g~~~~~~~~~~~~~~lP~i~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~i~~~~g~~V~lg~ 157 (220)
T 2vh1_A 80 --HMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGR 157 (220)
T ss_dssp --EEEETTCCEEECCGGGTTTCCCCEEECSTTCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSCEEEECSSSCEEEEES
T ss_pred --CCEEECCCEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHEEECCCCEEEEEECCCCEEEECC
T ss_conf --748854987886124455556746754654179999999998754111100002116526726999989984899788
Q ss_pred CCHHHHHHHHHHHHHH----HCHHCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 1179999999998763----0100088338961129836999768421558999888798
Q gi|254781178|r 243 EKFDVAIAKILELQNK----YQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQ 298 (304)
Q Consensus 243 ~~~~~~L~rL~~l~~~----~k~~~r~I~~IDLR~pdri~Vrl~~~a~~~r~~~~~~r~k 298 (304)
+++.++|++|.++++. .....++|.|||||||||++|+|++.++++.....+.++.
T Consensus 158 ~~~~~kL~rl~~i~~~l~~~~~~~~~~i~~IDLR~~~~~av~~~~~~~~~~~~~~~~~~~ 217 (220)
T 2vh1_A 158 GDTMKRLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQA 217 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEECC-------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 679999999999999999873013588549986489971897789993201250114554
No 3
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=98.30 E-value=5.2e-06 Score=56.77 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=84.0
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHH-HHHHHHHHHH-HCCCEEEEEEECC----C
Q ss_conf 93037999995792799705641032100-01124543113776678899-9987664013-1033038998258----8
Q gi|254781178|r 154 TERHPYAIWQNNSALYLIDNNGYVITAFN-HVRFAYLPILIGENIYKAVR-SFEVLSNIAG-ITKFVKAYNWIAE----R 226 (304)
Q Consensus 154 ~Er~PvA~~~~~g~~~~Id~~G~Vi~~~~-~~~~~~lPli~G~~~~~~~~-~~~~L~~~~~-l~~~i~~~~~v~~----r 226 (304)
+|+..+|+++.+++++.|.++|.++.... .....+.|++.|...+...+ ....+...++ +.++|.++.+.+. .
T Consensus 2 tE~~~vgy~~~~~~yy~iLenG~~l~~~~~~~~~~~~Pi~~gf~~~~~l~~l~~~l~~l~~~i~~~ISEI~~~p~k~~~~ 81 (119)
T 1yr1_A 2 SEWRRIAYVYDRQTFFPLLENGRLLKQEGTKTAPSDAPVLVGWKDGDAIAEMTGQLAELPAAVLGAMSEIHYKPTREYED 81 (119)
T ss_dssp CCCCEEEEEEETTEEEEEETTCCBCSTTCBSSCCTTSCCEESCCCHHHHHHHHHHHHHSCHHHHHSCSEEEECCCSSCTT
T ss_pred CCCCEEEEEEECCEEEEECCCCCEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHCCCEEEECCCCCCCC
T ss_conf 86537899998996899906994952345677678886771789757999999999759999994066998278888876
Q ss_pred EEEEEECCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 05899749828980851179999999998763
Q gi|254781178|r 227 RWDLHLHNGIIIKLPEEKFDVAIAKILELQNK 258 (304)
Q Consensus 227 rWdL~l~nGi~IkLp~~~~~~~L~rL~~l~~~ 258 (304)
++.|.+.+|..|..+-+.+.+++.-+-++..+
T Consensus 82 ~i~l~M~DGn~V~~~i~t~a~Km~yYp~I~~~ 113 (119)
T 1yr1_A 82 RVIVYMNDGYEVSATIRQFADKLSHYPAIAAA 113 (119)
T ss_dssp EEEEECTTSCEEEEESSSHHHHHHTCHHHHHH
T ss_pred EEEEEECCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 49999669999998999999888888999986
No 4
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=97.87 E-value=0.00012 Score=48.09 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=72.0
Q ss_pred HHCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEEE
Q ss_conf 21081254899977654898899998088889843887599999998719762279999828981999999303799999
Q gi|254781178|r 84 SFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQ 163 (304)
Q Consensus 84 ~~~gF~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~~P~tL~I~I~Er~PvA~~~ 163 (304)
-|-+|.|++|+|+||++++++.|+..+++..|+.+-.-+.++.-++|.+..+-.+|+|... .+.|.+.|+|+.-+.-+.
T Consensus 4 ~a~~~~I~~I~i~G~~~v~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~dV~v~~~-g~~l~i~v~e~p~i~~i~ 82 (335)
T 2qdf_A 4 MAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-GDTLLVQVKERPTIASIT 82 (335)
T ss_dssp CCCCEECCEEEEESCSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEE-TTEEEEEEEECCEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCEEEEEEEECCCCCCCE
T ss_conf 5677489799999983279999997468999992799999999999997699424899972-888999888645311112
Q ss_pred ECC
Q ss_conf 579
Q gi|254781178|r 164 NNS 166 (304)
Q Consensus 164 ~~g 166 (304)
..|
T Consensus 83 ~~G 85 (335)
T 2qdf_A 83 FSG 85 (335)
T ss_dssp EES
T ss_pred EEC
T ss_conf 664
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=97.84 E-value=5.3e-05 Score=50.39 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=72.3
Q ss_pred HHHCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEEEEEEEEE
Q ss_conf 42108125489997765489889999808888984388759999999871976227999982898199999930379999
Q gi|254781178|r 83 DSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIW 162 (304)
Q Consensus 83 ~~~~gF~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~~P~tL~I~I~Er~PvA~~ 162 (304)
|-+-+|-|++|+|.||++++++.|+..+++..|+.+=.-+.++.-++|-+..+..+|+|+.. -+.|.|.|+|+..+.-+
T Consensus 2 a~a~~~~I~~I~i~G~~~i~~~~i~~~~~~~~G~~~~~~~i~~~ik~L~~tg~F~~V~i~~~-g~~l~i~V~E~p~i~~i 80 (395)
T 3efc_A 2 AMAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-GDTLLVQVKERPTIASI 80 (395)
T ss_dssp ----CCCEEEEECSCCSSSCHHHHHHTCSCCTTSCCCTHHHHHHHHHHHHHCCEEEEEEECC-SSEEEEEEEECCEEEEE
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC-CCEEEEEEEECCEEEEE
T ss_conf 87777189789999984179999997468999993798999999999996798026999962-99999999944616037
Q ss_pred EECC
Q ss_conf 9579
Q gi|254781178|r 163 QNNS 166 (304)
Q Consensus 163 ~~~g 166 (304)
...|
T Consensus 81 ~~~G 84 (395)
T 3efc_A 81 TFSG 84 (395)
T ss_dssp EEES
T ss_pred EEEC
T ss_conf 9997
No 6
>3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli}
Probab=96.08 E-value=0.022 Score=33.67 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=37.4
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHH----HCCCC
Q ss_conf 1254899977654898899998088889843887599999998----71976
Q gi|254781178|r 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQL----LALPW 135 (304)
Q Consensus 88 F~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L----~~~pw 135 (304)
|.|..|.++||...+++++.+.+++..|..+-.-...+.+++| .+..+
T Consensus 6 y~v~~I~~~Gn~~~~~~~l~~~l~lk~G~~~~~~~i~~~~~~l~~~y~~~Gy 57 (166)
T 3og5_A 6 YKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGY 57 (166)
T ss_dssp SEEEEEEEEEECTTCHHHHHHHHCCCTTCBCCHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 0898899985787898999988556888612499999999999999997797
No 7
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=94.18 E-value=0.18 Score=27.85 Aligned_cols=75 Identities=9% Similarity=0.029 Sum_probs=56.8
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEE-CCCEE--EEEEEEEEEEE
Q ss_conf 08125489997765489889999808888984388759999999871976227999982-89819--99999303799
Q gi|254781178|r 86 IGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRL-YPDTM--EIRLTERHPYA 160 (304)
Q Consensus 86 ~gF~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~-~P~tL--~I~I~Er~PvA 160 (304)
+-+.|++|.|+||...++.++.+.+.+..|..+-.-.+++-.++|.+..|-.+|+|.-. -+..+ .+.+.|+..+.
T Consensus 3 ~~~~i~~i~i~G~~~~~~~~l~~~i~~~~g~~~~~~~l~~d~~~l~~~g~f~dv~v~~~~~~~~v~~~~~~~~~~~i~ 80 (235)
T 2x8x_X 3 PKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLR 80 (235)
T ss_dssp CCEEEEEEEEESCCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETTEEEEEEEEEECCBCC
T ss_pred CEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCEEEE
T ss_conf 729999999999970798899975467899854999999999999984981467630344667715899860210899
No 8
>3og5_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 2.69A {Escherichia coli}
Probab=93.14 E-value=0.41 Score=25.60 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=59.6
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEEC-C---C--EEEEEEEEEEE
Q ss_conf 1254899977654898899998088889843887599999998719762279999828-9---8--19999993037
Q gi|254781178|r 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLY-P---D--TMEIRLTERHP 158 (304)
Q Consensus 88 F~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~~-P---~--tL~I~I~Er~P 158 (304)
+.|.+|.+.||..+++..|.+.+.+..|..+-.-..++..++|.++...++|.+.-.. | + .|.|.|+|+.+
T Consensus 87 ~~i~~I~i~Gn~~~~~~~l~r~~~~~~G~~~~~~~l~~~~~~L~~~g~F~~v~i~~~~~~~~~~~v~i~i~v~E~~t 163 (166)
T 3og5_A 87 FYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKERNT 163 (166)
T ss_dssp CEEEEEEEESCCSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHTTSCEEEEEEEEEECTTCSSEEEEEEEEEEC--
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEEEECCC
T ss_conf 77500111124555189999986402577748789999999998469951426763226899986999999996789
No 9
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=88.90 E-value=1.1 Score=22.80 Aligned_cols=80 Identities=3% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CEEEEEEEEECCCCCCHHH----HHHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEEE-CCC--EEEEEEEEEEEE
Q ss_conf 8125489997765489889----999808888984388759999999871976227999982-898--199999930379
Q gi|254781178|r 87 GFSIEKVRIIGNVETPEAD----IIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRL-YPD--TMEIRLTERHPY 159 (304)
Q Consensus 87 gF~I~~I~V~Gn~~ls~~e----Il~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r~-~P~--tL~I~I~Er~Pv 159 (304)
---|..|.|+||...++.| |++.+....|..+-.-.+++--++|.+..|-.+|++... -|+ .|.+.|.|+..+
T Consensus 61 ~v~i~eV~i~G~~~~~~~eLe~~i~~~i~~r~G~~~s~~~l~~di~~L~~tG~F~~V~~~~~~~~~gv~l~~~v~e~p~i 140 (316)
T 3mc9_A 61 RVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVL 140 (316)
T ss_dssp CEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHHHTSCEEEEEEEEEEETTEEEEEEEEEECCBC
T ss_pred CEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCEE
T ss_conf 15789999980678888899999998601689982799999999999997599115899987469855999999878789
Q ss_pred EEEEECC
Q ss_conf 9999579
Q gi|254781178|r 160 AIWQNNS 166 (304)
Q Consensus 160 A~~~~~g 166 (304)
..+...|
T Consensus 141 ~~i~i~G 147 (316)
T 3mc9_A 141 SKVEIQA 147 (316)
T ss_dssp CEEEEEC
T ss_pred EEEEEEC
T ss_conf 9999974
No 10
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli}
Probab=82.00 E-value=0.22 Score=27.35 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=43.1
Q ss_pred EEEEEEEECCCCCCHHHHH---HHHCCCCCCCEEEECHHHHHHHH----HCCCCE-EEEEEEE--ECCCE--EEEEEEEE
Q ss_conf 2548999776548988999---98088889843887599999998----719762-2799998--28981--99999930
Q gi|254781178|r 89 SIEKVRIIGNVETPEADII---HCLDLNTSTSLIFFDAIKIQKQL----LALPWI-AHAEIRR--LYPDT--MEIRLTER 156 (304)
Q Consensus 89 ~I~~I~V~Gn~~ls~~eIl---~~l~i~~~~sl~~ld~~~i~~~L----~~~pwI-k~a~V~r--~~P~t--L~I~I~Er 156 (304)
.|++|.+.||...++.++. ...++..+..+-.-..++..+.| .+...- ..++++. .-++. +.+.|.|-
T Consensus 76 ~i~~i~~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~Gy~~~~v~~~~~~~~~~~v~v~~~I~Eg 155 (395)
T 3efc_A 76 TIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEG 155 (395)
T ss_dssp EEEEEEEESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECC
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 16037999762134445433210134344441235668999999999998708632210237752467505544432005
Q ss_pred EEEEE
Q ss_conf 37999
Q gi|254781178|r 157 HPYAI 161 (304)
Q Consensus 157 ~PvA~ 161 (304)
..+-+
T Consensus 156 ~~~kI 160 (395)
T 3efc_A 156 VSAEI 160 (395)
T ss_dssp CCCCC
T ss_pred CCCCC
T ss_conf 54221
No 11
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis}
Probab=34.39 E-value=20 Score=14.82 Aligned_cols=70 Identities=14% Similarity=-0.005 Sum_probs=36.4
Q ss_pred EEEEEEEECCCCCCHHHH---HHHHCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEE-ECCCE--EEEEEEEEEE
Q ss_conf 254899977654898899---9980888898438875999999987197622799998-28981--9999993037
Q gi|254781178|r 89 SIEKVRIIGNVETPEADI---IHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRR-LYPDT--MEIRLTERHP 158 (304)
Q Consensus 89 ~I~~I~V~Gn~~ls~~eI---l~~l~i~~~~sl~~ld~~~i~~~L~~~pwIk~a~V~r-~~P~t--L~I~I~Er~P 158 (304)
+|..|.|.|+.......+ ........+..+=.-++++..++|...++..++++.- .-|++ +.|+++|++|
T Consensus 135 ~i~~i~i~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~le~~~~~l~~~g~~~~v~l~p~~~~g~~~~~v~v~~~~~ 210 (554)
T 2qdz_A 135 RIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRAL 210 (554)
T ss_dssp EEEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSSEEEEEEEEECSSTTEEEEEEEEEECCS
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 1556898325556713666677647677788467889999999875058622589860788985226789887355
No 12
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=24.47 E-value=30 Score=13.74 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=43.3
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE--CHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 1254899977654898899998088889843887--5999999987197622799998289
Q gi|254781178|r 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFF--DAIKIQKQLLALPWIAHAEIRRLYP 146 (304)
Q Consensus 88 F~I~~I~V~Gn~~ls~~eIl~~l~i~~~~sl~~l--d~~~i~~~L~~~pwIk~a~V~r~~P 146 (304)
.++.+|.|.| ..+++--|.+.+.-..|-+..++ |....++.-+-.|||..+.|++-.-
T Consensus 119 ~~v~~v~iNG-~~~gE~~lna~~Ag~~gVPV~lVsGD~~~~~E~~~~~p~~~tv~vK~~~g 178 (274)
T 1hi9_A 119 FGVRHFYIND-RPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTIS 178 (274)
T ss_dssp TTEEEEEETT-EEECHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEE
T ss_pred CCEEEEEECC-EECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 1237999999-99268899999987429977998428999999998689966999733126
No 13
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.08A {Picrophilus torridus dsm 9790} SCOP: d.316.1.1
Probab=24.40 E-value=30 Score=13.73 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCCEEEEEEEEE
Q ss_conf 999999871976227999982
Q gi|254781178|r 124 IKIQKQLLALPWIAHAEIRRL 144 (304)
Q Consensus 124 ~~i~~~L~~~pwIk~a~V~r~ 144 (304)
+++++.++.+|.|++++|+-.
T Consensus 48 ~AIeesi~~QPfv~dv~V~I~ 68 (121)
T 2i52_A 48 EFIERSTMIQPFVENVRISIN 68 (121)
T ss_dssp HHHHHHHTTSTTEEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEEEEEEC
T ss_conf 999999841985767999977
No 14
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=21.36 E-value=34 Score=13.35 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=13.0
Q ss_pred CHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 599999998719762279999828
Q gi|254781178|r 122 DAIKIQKQLLALPWIAHAEIRRLY 145 (304)
Q Consensus 122 d~~~i~~~L~~~pwIk~a~V~r~~ 145 (304)
=.+++++.+++.|+|++++|.-.|
T Consensus 60 i~~~i~~al~~~~gv~~V~V~~~~ 83 (103)
T 3cq1_A 60 LGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTSTTCCEEEEEECC
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 999999999808997438999995
Done!