RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(304 letters)
>gnl|CDD|149506 pfam08478, POTRA_1, POTRA domain, FtsQ-type. FtsQ/DivIB bacterial
division proteins (pfam03799) contain an N-terminal
POTRA domain (for polypeptide-transport-associated
domain). This is found in different types of proteins,
usually associated with a transmembrane beta-barrel.
FtsQ/DivIB may have chaperone-like roles, which has also
been postulated for the POTRA domain in other contexts.
Length = 67
Score = 73.0 bits (180), Expect = 8e-14
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 90 IEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTM 149
I +V + GN +I L + TS D I+ +L LPWI A +RR +P+T+
Sbjct: 1 IRQVEVSGNKHVSAEEIRKALGIQKGTSFFSVDLNAIEDRLEKLPWIKSASVRRQWPNTL 60
Query: 150 EIRLTER 156
EIR+ ER
Sbjct: 61 EIRVVER 67
>gnl|CDD|182720 PRK10775, PRK10775, cell division protein FtsQ; Provisional.
Length = 276
Score = 61.3 bits (149), Expect = 3e-10
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 126 IQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA-FNHV 184
IQ+Q+ LPWI +R+ +PD ++I L E P A W + +++D G + +
Sbjct: 96 IQQQIERLPWIKQVSVRKQWPDELKIHLVEYVPIARWND---QHMVDAEGNSFSVPADRT 152
Query: 185 RFAYLPILIG-ENIYKAV-RSFEVLSNIAGITKF-VKAYNWIAERRWDLHLHNGIIIKLP 241
LP+L G E V + + + + KF +K A R W L L+N I ++L
Sbjct: 153 GKQVLPMLYGPEGSENEVLQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLNNDIRLELG 212
Query: 242 EEKFDVAIAKILE----LQNKYQILDRDISVIDMR 272
+A+ +E LQ + Q + IS +D+R
Sbjct: 213 RGDTMKRLARFIELYPVLQQQAQTDGKRISYVDLR 247
>gnl|CDD|135428 PRK05529, PRK05529, cell division protein FtsQ; Provisional.
Length = 255
Score = 45.3 bits (107), Expect = 2e-05
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 89 SIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDT 148
++ + + GN+ DI+ L L D ++K+L A P I + P T
Sbjct: 62 ALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT 121
Query: 149 MEIRLTERHPYAIWQNNSALYLIDNNGYVI 178
+ +R+ ER P A Q +++D G I
Sbjct: 122 IVVRVVERVPLAFIQRGDGFHVVDAAGVSI 151
>gnl|CDD|182901 PRK11017, codB, cytosine permease; Provisional.
Length = 404
Score = 31.4 bits (72), Expect = 0.28
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 9 LSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFFF 61
+ R V+ + L L NF+ + L +P GVI+A +F
Sbjct: 287 TRLSSRTLTVVNGIIGTVLALWLYN--NFVGWLTLLGSAIPPVGGVIIADYFM 337
>gnl|CDD|152029 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 30.8 bits (69), Expect = 0.42
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 239 KLPEEKFDVAIAKILELQNKYQILDRDI 266
K +EKF + +K+LEL N Q L +D
Sbjct: 61 KTSQEKFLLIRSKLLELYNNIQKLSKDF 88
>gnl|CDD|178161 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 29.8 bits (67), Expect = 0.82
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 140 EIRRLYPDTMEIR----LTERHPYAIWQNNSALYLIDNNGYVITAFNHVRFA 187
E+R + M +R TE P AI ++ + N + F+HV FA
Sbjct: 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFA 345
>gnl|CDD|152883 pfam12449, DUF3684, Protein of unknown function (DUF3684). This
domain family is found in eukaryotes, and is typically
between 1072 and 1090 amino acids in length.
Length = 1082
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 164 NNSAL-YLIDN---NGYVITAFNHVRFAYLPILIGENIYKAVRSFEVLSN 209
+ A+ Y I N NGY + V A+LP E K + E ++
Sbjct: 733 RDKAMSYFISNHHANGYAAFDISAVTIAFLPAEGNEKEGKLSKPSECFTD 782
>gnl|CDD|182651 PRK10692, PRK10692, hypothetical protein; Provisional.
Length = 92
Score = 28.0 bits (63), Expect = 2.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 53 GVILAIFFFAIVGIYGASIGGH 74
G +L+IF A++ + GA +GG
Sbjct: 45 GALLSIFVGALLWLAGARVGGR 66
>gnl|CDD|179166 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.
Length = 513
Score = 28.2 bits (64), Expect = 3.1
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 238 IKLPEEKFDVAIAKILELQN-KYQILDRDI-----SVIDMRLPDRL---SVRLTTGS 285
KL +E+ D A + EL + K ++ D D+ P+ S+++ +GS
Sbjct: 346 YKLSDEELDKAFERFKELADKKKEVFDEDLEALVEDETQQEEPEHYKLESLQVQSGS 402
>gnl|CDD|163382 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this
highly hydrophobic probable integral membrane family
belong to two classes. In one, a single copy of the
region modeled by This model represents essentially the
full length of a strongly hydrophobic protein of about
700 to 900 residues (variable because of long inserts in
some). The domain architecture of the other class
consists of an additional N-terminal region, two copies
of the region represented by this model, and three to
four repeats of TPR, or tetratricopeptide repeat. The
unusual species range includes several Archaea, several
Chloroflexi, and Clostridium phytofermentans. An unusual
motif YYYxG is present, and we suggest the name
Chlor_Arch_YYY protein. The function is unknown.
Length = 723
Score = 27.8 bits (62), Expect = 3.6
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 1 MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF 60
A R R L++ + L VLGL + N +F P Y G+ + F
Sbjct: 291 ALAWWLRPKGEQRPRWLILLL---LALVLGLLAVTNSWDF--------PIYAGLAGLVVF 339
Query: 61 FAIVGIYGASIGGHTRK-VIDIVDSFIGFSI 90
A Y A G R+ VI + + +
Sbjct: 340 AAYGRPYRAPGNGWLREAVILALGQAVLVPV 370
>gnl|CDD|161847 TIGR00380, cobD, cobalamin biosynthesis protein CobD. This protein
is involved in cobalamin (vitamin B12) biosynthesis and
porphyrin biosynthesis. It converts cobyric acid to
cobinamide by the addition of aminopropanol on the F
carboxylic group. It is part of the cob operon.
Length = 305
Score = 27.5 bits (61), Expect = 4.8
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 53 GVILAIFFFAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIG 97
GV +F+ + G+ GA + + ++ +D+ +G+ E +G
Sbjct: 156 GVTAPLFYAILFGLPGAFV----YRAVNTLDAMVGYKREPYTDLG 196
>gnl|CDD|132072 TIGR03027, pepcterm_export, putative polysaccharide export protein,
PEP-CTERM sytem-associated. This protein family belongs
to the larger set of polysaccharide biosynthesis/export
proteins described by Pfam model pfam02563. Members of
this family are variable in either containing of lacking
a 78-residue insert, but appear to fall within a single
clade, nevertheless, where the regions in which the gene
is found encode components of the PEP-CTERM/EpsH
proposed exosortase protein sorting system.
Length = 165
Score = 27.3 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 81 IVDSFIGFSIEKVRIIGNVETPEA 104
IV FIG E++R++G P+A
Sbjct: 69 IVTGFIGPFSEQIRVVGAAANPQA 92
>gnl|CDD|178460 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 27.4 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 94 RIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALP 134
RII V + D+IH +S ++ F A+ K LL +P
Sbjct: 135 RIISEVARFKPDLIHA----SSPGIMVFGALFYAK-LLCVP 170
>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of
prokaryotic proteins models a class of Mg++ transporter
first described in Bacillus firmus. May form a
homodimer.
Length = 449
Score = 27.1 bits (60), Expect = 5.6
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 236 IIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVD 294
I I L E+ + K L+ Q DI+ RLP + L F+ ++ VD
Sbjct: 11 IRILLKEKSYSKIKEKFLKXQPX------DIAEALKRLPGTELILLY--RFLPKKIAVD 61
>gnl|CDD|149044 pfam07760, DUF1616, Protein of unknown function (DUF1616). This is
a family of sequences from hypothetical archaeal
proteins. The region in question is approximately 330
amino acid residues long.
Length = 278
Score = 26.5 bits (59), Expect = 7.8
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 13 RRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFFFAIVGIY 67
R L +G+S+++ ++GL LN+ + ++ P + F +V Y
Sbjct: 58 ERAALSVGLSIAIVPLIGL-----GLNYTPWGIRLAPILISLSAFTLIFCLVAYY 107
>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase,
bacterial. A deep split separates two families of GMP
reductase. The other (TIGR01305) is found in eukaryotic
and some proteobacterial lineages, including E. coli,
while this family is found in a variety of bacterial
lineages.
Length = 321
Score = 26.4 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 73 GHTRKVIDIVDSFIGFSIEKVRIIGNVETPEA 104
GH+ VI+++ + I GNV TPEA
Sbjct: 119 GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEA 150
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.329 0.145 0.437
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,255,388
Number of extensions: 357167
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 38
Length of query: 304
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 211
Effective length of database: 3,984,929
Effective search space: 840820019
Effective search space used: 840820019
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)