RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (304 letters) >2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:98-255) Length = 158 Score = 112 bits (281), Expect = 7e-26 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 8/149 (5%) Query: 158 PYAIWQNNSALYLIDNNGYVITA-FNHVRFAYLPILIGE--NIYKAVRSFEVLSNIAGIT 214 P+A W + +++D G + V LP+L G + + + ++ + Sbjct: 1 PFARWNDL---HMVDEQGRSFSVPSERVGKQKLPLLYGPEGSEQDVLEGYRAINKVLAAN 57 Query: 215 KF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNKYQ-ILDRDISVIDMR 272 K+ +K A W L L N + ++L + + + +EL Q D+ +S +D+R Sbjct: 58 KYQLKMVAMSARHSWQLALDNDVRLELGRDDRMGRLQRFIELYPMLQQQPDKRVSYVDLR 117 Query: 273 LPDRLSVRLTTGSFIDRRDIVDKRDQELK 301 ++ + Q+ Sbjct: 118 YETGAAIGWAPVFIGSQGGEPPVNGQQNS 146 >2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} (A:72-220) Length = 149 Score = 105 bits (264), Expect = 7e-24 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 11/150 (7%) Query: 158 PYAIWQNNSALYLIDNNGYVITA-FNHVRFAYLPILIGE--NIYKAVRSFEVLSNIAGIT 214 P A W + +++D G + LP+L G + + ++ + + + Sbjct: 1 PIARWNDQ---HMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKD 57 Query: 215 KF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKIL----ELQNKYQILDRDISVI 269 +F +K A R W L L+N I + L +A+ + LQ + Q + IS + Sbjct: 58 RFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKRISYV 117 Query: 270 DMRLPDRLSVRLTTGSFIDRRDIVDKRDQE 299 D+R +V + ++ E Sbjct: 118 DLRYDSGAAVGWAPLPPEESTQQQNQAQAE 147 >2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} (A:1-97) Length = 97 Score = 62.1 bits (151), Expect = 1e-10 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%) Query: 56 LAIFFFAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADII--HCLDLN 113 + + + K+ + G D I L L Sbjct: 3 SSHHHHHHSSGLV---------PRGSHMASSRLPLSKLVVTGERHYTTNDDIRQAILSLG 53 Query: 114 TSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTER 156 + + D IQ+Q+ LPWI A +R+ +PD ++I L E Sbjct: 54 APGTFMTQDVNIIQQQIERLPWIQQASVRKQWPDELKIHLVEY 96 >2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} (A:1-71) Length = 71 Score = 60.5 bits (147), Expect = 2e-10 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 90 IEKVRIIGNVE-TPEADIIHCL-DLNTSTSLIFFDAIKIQKQLLA-LPWIAHAEIRRLYP 146 + K+ + G T DI + L + + D IQ Q+ LPWI +R+ +P Sbjct: 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWP 60 Query: 147 DTMEIRLTER 156 D ++I L E Sbjct: 61 DELKIHLVEY 70 >1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus} (A:208-229,A:418-619) Length = 224 Score = 29.5 bits (66), Expect = 0.59 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 191 ILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWD--LHLHNGIIIKLPEEKFDVA 248 + +Y +R++ V + ++ +R + L L E+K+D Sbjct: 128 YKAADRVYSLIRAYWVREFNGKWD---RKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDEL 184 Query: 249 IAK 251 +++ Sbjct: 185 LSE 187 >1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A (A:) Length = 119 Score = 28.9 bits (65), Expect = 0.89 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 13/103 (12%) Query: 154 TERHPYAIWQNNSALYLIDNNGYVITAF-NHVRFAYLPILIGENIYKAVRSF-------- 204 +E A + + + NG ++ + P+L+G A+ Sbjct: 2 SEWRRIAYVYDRQTFFPLLENGRLLKQEGTKTAPSDAPVLVGWKDGDAIAEMTGQLAELP 61 Query: 205 -EVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKLPEEKFD 246 VL ++ I E R +++++G + +F Sbjct: 62 AAVLGAMSEIHYKPTREY---EDRVIVYMNDGYEVSATIRQFA 101 >2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} (A:1-34,A:105-155) Length = 85 Score = 27.1 bits (60), Expect = 3.3 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 225 ERRWDLHLHNGIIIKLPEEKFD 246 ERRW+ HNG++ PE + Sbjct: 19 ERRWETLAHNGVLFP-PEPIYQ 39 >2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A (A:1-75) Length = 75 Score = 25.8 bits (57), Expect = 6.5 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 88 FSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPD 147 F ++ + G + + + T ++ D + L A + R D Sbjct: 8 FVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD-GD 66 Query: 148 TMEIRLTER 156 T+ +++ ER Sbjct: 67 TLLVQVKER 75 >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:130-222) Length = 93 Score = 25.9 bits (57), Expect = 6.8 Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%) Query: 141 IRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITAFN 182 + ++Y + + RH Y + N + + G I+A Sbjct: 38 MAKIYSKSNIVVERHRHRYEV--NTAYFEDLRKAGLCISAVT 77 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.9 bits (57), Expect = 7.4 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 6/31 (19%) Query: 104 ADIIHCLDLNTSTSLIFFDAIKIQKQLLALP 134 AD++ L ++F+ + +Q A+P Sbjct: 3 ADVMSIESL---VEVVFYRGMTMQV---AVP 27 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.329 0.145 0.437 Gapped Lambda K H 0.267 0.0615 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,467,438 Number of extensions: 116193 Number of successful extensions: 324 Number of sequences better than 10.0: 1 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 23 Length of query: 304 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 216 Effective length of database: 1,981,209 Effective search space: 427941144 Effective search space used: 427941144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 54 (24.8 bits)