RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (304 letters) >2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica} Length = 255 Score = 123 bits (309), Expect = 6e-29 Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 10/202 (4%) Query: 88 FSIEKVRIIGNVE-TPEADIIHCL-DLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLY 145 + K+ + G T DI + L + + D IQ+Q+ LPWI A +R+ + Sbjct: 26 LPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW 85 Query: 146 PDTMEIRLTERHPYAIWQNNSALYLIDNNGYVIT-AFNHVRFAYLPILIG--ENIYKAVR 202 PD ++I L E P+A W + +++D G + V LP+L G + + Sbjct: 86 PDELKIHLVEYVPFARWNDL---HMVDEQGRSFSVPSERVGKQKLPLLYGPEGSEQDVLE 142 Query: 203 SFEVLSNIAGITKF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNK-YQ 260 + ++ + K+ +K A W L L N + ++L + + + +EL Q Sbjct: 143 GYRAINKVLAANKYQLKMVAMSARHSWQLALDNDVRLELGRDDRMGRLQRFIELYPMLQQ 202 Query: 261 ILDRDISVIDMRLPDRLSVRLT 282 D+ +S +D+R ++ Sbjct: 203 QPDKRVSYVDLRYETGAAIGWA 224 >2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli} Length = 220 Score = 114 bits (287), Expect = 2e-26 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 12/204 (5%) Query: 90 IEKVRIIGNVETPEADII--HCLDLNTSTSLIFFDAIKIQKQLL-ALPWIAHAEIRRLYP 146 + K+ + G D I L L + + D IQ Q+ LPWI +R+ +P Sbjct: 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWP 60 Query: 147 DTMEIRLTERHPYAIWQNNSALYLIDNNGYVITAFNHVRFAYLPILIG--ENIYKAVRSF 204 D ++I L E P A W + + N V LP+L G + + ++ + Sbjct: 61 DELKIHLVEYVPIARWNDQHMVDAEGNTFSVP--PERTSKQVLPMLYGPEGSANEVLQGY 118 Query: 205 EVLSNIAGITKF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILE----LQNKY 259 + + +F +K A R W L L+N I + L +A+ +E LQ + Sbjct: 119 REMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQA 178 Query: 260 QILDRDISVIDMRLPDRLSVRLTT 283 Q + IS +D+R +V Sbjct: 179 QTDGKRISYVDLRYDSGAAVGWAP 202 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.9 bits (98), Expect = 2e-04 Identities = 38/256 (14%), Positives = 72/256 (28%), Gaps = 89/256 (34%) Query: 78 VIDIVDSFIGFSIEKVRIIGNVETP----------EADI-----IHCL--DLNTSTSLIF 120 ++V F+G+ V + E IH L L Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN---- 112 Query: 121 FDAIKIQKQLLALPWI-AHAEIRRLYPDTMEIRLTERHPYAIWQ----NNSALYLI---- 171 D ++ + I + R + + ++ A+++ N+ L I Sbjct: 113 -DTTLVKTKE----LIKNYITARIM----AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163 Query: 172 -DNNGYVITAFNHVRFAYLPILIGENIYKA-VRSF-----EVLSNIAGITK-FVKAYNWI 223 + + Y F +R Y Y V E LS + T K + Sbjct: 164 GNTDDY----FEELRDLY-------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-- 210 Query: 224 AERRWDLH--LHNGIIIKLPEEKFDVA-----------IAKILELQNKYQILDR--DISV 268 + ++ L N P D I +++L + Y + + + Sbjct: 211 --QGLNILEWLEN------PSNTPDKDYLLSIPISCPLIG-VIQLAH-YVVTAKLLGFTP 260 Query: 269 IDMRLPDRLSVRLTTG 284 ++R L TG Sbjct: 261 GELR--SYLKG--ATG 272 >2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis KOD1} PDB: 2cw7_A Length = 537 Score = 28.8 bits (63), Expect = 1.7 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 22/95 (23%) Query: 80 DIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHA 139 +++D + + KV+ G E E + N T+ +K A Sbjct: 23 ELIDRMMEENAGKVKREGETEVLEVSGLEVPSFNRRTNKAELKRVK-------------A 69 Query: 140 EIRRLYPDTM---------EIRLTERHPYAIWQNN 165 IR Y + I++T H +N Sbjct: 70 LIRHDYSGKVYTIRLKSGRRIKITSGHSLFSVRNG 104 >1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 1yv0_I 1vdi_A 1vdj_A Length = 182 Score = 28.2 bits (63), Expect = 2.3 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 229 DLHLHNGIIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272 LH I + EE++D K+ + ++ D + D+R Sbjct: 66 KLHAK---IDSVDEERYDTE-VKLQ--KTNKELEDLSQKLFDLR 103 >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Length = 1231 Score = 27.6 bits (61), Expect = 3.5 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 11/95 (11%) Query: 80 DIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQ-KQLLALPWIAH 138 I S + F + ++ V AD + C + + IK +L PW + Sbjct: 461 GITISHLRFGEKPIQSTYLVN--RADYVACHNPAYVGIYDILEGIKDGGTFVLNSPWSSL 518 Query: 139 AEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDN 173 ++ + P ++ I Y ID Sbjct: 519 EDMDKHLPSGIKR--------TIANKKLKFYNIDA 545 >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88 Score = 27.4 bits (61), Expect = 4.1 Identities = 10/47 (21%), Positives = 18/47 (38%) Query: 110 LDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTER 156 LD T L F D ++ + + + + YP +RL + Sbjct: 16 LDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPK 62 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 Score = 26.7 bits (58), Expect = 6.8 Identities = 6/24 (25%), Positives = 16/24 (66%) Query: 248 AIAKILELQNKYQILDRDISVIDM 271 A K+ L ++Y+++ + +VI++ Sbjct: 9 AAFKLEFLLDRYRVVRKGDAVIEI 32 >1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Length = 133 Score = 26.5 bits (59), Expect = 6.9 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 237 IIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272 + K+ EE++D+ AK+ +N +I D + D+R Sbjct: 74 VDKVDEERYDIE-AKVT--KNITEIADLTQKIFDLR 106 >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 Score = 26.6 bits (58), Expect = 7.0 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 176 YVITAFNHVRFAYLPILIGENIYKAVRS--FEVLSNI 210 + AF FA L L+ EN KA++ F ++ I Sbjct: 44 GLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEI 80 >1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Length = 180 Score = 26.6 bits (59), Expect = 7.3 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 237 IIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272 + K+ EE++D+ AK+ +N +I D + D+R Sbjct: 74 VDKVDEERYDIE-AKVT--KNITEIADLTQKIFDLR 106 >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* 1ktq_A* 5ktq_A* 3ktq_A* 1jxe_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A* Length = 832 Score = 26.5 bits (57), Expect = 7.7 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 16/94 (17%) Query: 173 NNGYVITAFNHVRFAYLPILIGENIYKAVRSFEVLSNI--------AGITKF--VKAYNW 222 GYV T F R Y+P L K+VR A + K VK + Sbjct: 716 RRGYVETLFGRRR--YVPDLEARV--KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPR 771 Query: 223 IAERRWDLHL--HNGIIIKLPEEKFDVAIAKILE 254 + E + L H+ ++++ P+E+ + E Sbjct: 772 LEEMGARMLLQVHDELVLEAPKERAEAVARLAKE 805 >3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A* Length = 291 Score = 26.3 bits (57), Expect = 8.2 Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 21/106 (19%) Query: 164 NNSALYLIDNNGYVITAFNH---VRFAYLPILIGENIYKAVR--------SFEVLSNIAG 212 + +++ N G ++ + L E I A E+ I G Sbjct: 187 DTGYAFMVSNTGIFLSHPTQKNWIGEKSLSDFDVEEIKNAASDIREGIGGHVEIKDPITG 246 Query: 213 ITKFVKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNK 258 T + Y + + ++ +P+ + +A + +L+++ Sbjct: 247 KTVIM-FYEPVKTGDF------SFVLVVPK---EEMLAGVKDLRDR 282 >3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237 Score = 26.2 bits (57), Expect = 9.0 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%) Query: 170 LIDNNGYVITAFNHV 184 ++D GY+IT HV Sbjct: 59 IMDQRGYIITN-KHV 72 >1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus} SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A* Length = 619 Score = 26.1 bits (57), Expect = 10.0 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 191 ILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGII--IKLPEEKFDVA 248 + +Y +R++ V K+ + ++ +R + L +G L E+K+D Sbjct: 523 YKAADRVYSLIRAYWVR---EFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDEL 579 Query: 249 IAKILEL 255 +++ + Sbjct: 580 LSEYYRI 586 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.145 0.437 Gapped Lambda K H 0.267 0.0532 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,824,360 Number of extensions: 138553 Number of successful extensions: 437 Number of sequences better than 10.0: 1 Number of HSP's gapped: 430 Number of HSP's successfully gapped: 24 Length of query: 304 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 212 Effective length of database: 3,462,782 Effective search space: 734109784 Effective search space used: 734109784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.8 bits)