RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(304 letters)
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia
enterocolitica}
Length = 255
Score = 123 bits (309), Expect = 6e-29
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 10/202 (4%)
Query: 88 FSIEKVRIIGNVE-TPEADIIHCL-DLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLY 145
+ K+ + G T DI + L + + D IQ+Q+ LPWI A +R+ +
Sbjct: 26 LPLSKLVVTGERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW 85
Query: 146 PDTMEIRLTERHPYAIWQNNSALYLIDNNGYVIT-AFNHVRFAYLPILIG--ENIYKAVR 202
PD ++I L E P+A W + +++D G + V LP+L G + +
Sbjct: 86 PDELKIHLVEYVPFARWNDL---HMVDEQGRSFSVPSERVGKQKLPLLYGPEGSEQDVLE 142
Query: 203 SFEVLSNIAGITKF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNK-YQ 260
+ ++ + K+ +K A W L L N + ++L + + + +EL Q
Sbjct: 143 GYRAINKVLAANKYQLKMVAMSARHSWQLALDNDVRLELGRDDRMGRLQRFIELYPMLQQ 202
Query: 261 ILDRDISVIDMRLPDRLSVRLT 282
D+ +S +D+R ++
Sbjct: 203 QPDKRVSYVDLRYETGAAIGWA 224
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell
cycle, transmembrane, inner membrane; 2.7A {Escherichia
coli}
Length = 220
Score = 114 bits (287), Expect = 2e-26
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 12/204 (5%)
Query: 90 IEKVRIIGNVETPEADII--HCLDLNTSTSLIFFDAIKIQKQLL-ALPWIAHAEIRRLYP 146
+ K+ + G D I L L + + D IQ Q+ LPWI +R+ +P
Sbjct: 1 MSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWP 60
Query: 147 DTMEIRLTERHPYAIWQNNSALYLIDNNGYVITAFNHVRFAYLPILIG--ENIYKAVRSF 204
D ++I L E P A W + + N V LP+L G + + ++ +
Sbjct: 61 DELKIHLVEYVPIARWNDQHMVDAEGNTFSVP--PERTSKQVLPMLYGPEGSANEVLQGY 118
Query: 205 EVLSNIAGITKF-VKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILE----LQNKY 259
+ + +F +K A R W L L+N I + L +A+ +E LQ +
Sbjct: 119 REMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQA 178
Query: 260 QILDRDISVIDMRLPDRLSVRLTT 283
Q + IS +D+R +V
Sbjct: 179 QTDGKRISYVDLRYDSGAAVGWAP 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 2e-04
Identities = 38/256 (14%), Positives = 72/256 (28%), Gaps = 89/256 (34%)
Query: 78 VIDIVDSFIGFSIEKVRIIGNVETP----------EADI-----IHCL--DLNTSTSLIF 120
++V F+G+ V + E IH L L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN---- 112
Query: 121 FDAIKIQKQLLALPWI-AHAEIRRLYPDTMEIRLTERHPYAIWQ----NNSALYLI---- 171
D ++ + I + R + + ++ A+++ N+ L I
Sbjct: 113 -DTTLVKTKE----LIKNYITARIM----AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 172 -DNNGYVITAFNHVRFAYLPILIGENIYKA-VRSF-----EVLSNIAGITK-FVKAYNWI 223
+ + Y F +R Y Y V E LS + T K +
Sbjct: 164 GNTDDY----FEELRDLY-------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-- 210
Query: 224 AERRWDLH--LHNGIIIKLPEEKFDVA-----------IAKILELQNKYQILDR--DISV 268
+ ++ L N P D I +++L + Y + + +
Sbjct: 211 --QGLNILEWLEN------PSNTPDKDYLLSIPISCPLIG-VIQLAH-YVVTAKLLGFTP 260
Query: 269 IDMRLPDRLSVRLTTG 284
++R L TG
Sbjct: 261 GELR--SYLKG--ATG 272
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis
KOD1} PDB: 2cw7_A
Length = 537
Score = 28.8 bits (63), Expect = 1.7
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 22/95 (23%)
Query: 80 DIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQKQLLALPWIAHA 139
+++D + + KV+ G E E + N T+ +K A
Sbjct: 23 ELIDRMMEENAGKVKREGETEVLEVSGLEVPSFNRRTNKAELKRVK-------------A 69
Query: 140 EIRRLYPDTM---------EIRLTERHPYAIWQNN 165
IR Y + I++T H +N
Sbjct: 70 LIRHDYSGKVYTIRLKSGRRIKITSGHSLFSVRNG 104
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 28.2 bits (63), Expect = 2.3
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 229 DLHLHNGIIIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272
LH I + EE++D K+ + ++ D + D+R
Sbjct: 66 KLHAK---IDSVDEERYDTE-VKLQ--KTNKELEDLSQKLFDLR 103
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 27.6 bits (61), Expect = 3.5
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 80 DIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIFFDAIKIQ-KQLLALPWIAH 138
I S + F + ++ V AD + C + + IK +L PW +
Sbjct: 461 GITISHLRFGEKPIQSTYLVN--RADYVACHNPAYVGIYDILEGIKDGGTFVLNSPWSSL 518
Query: 139 AEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDN 173
++ + P ++ I Y ID
Sbjct: 519 EDMDKHLPSGIKR--------TIANKKLKFYNIDA 545
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 88
Score = 27.4 bits (61), Expect = 4.1
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 110 LDLNTSTSLIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTER 156
LD T L F D ++ + + + + YP +RL +
Sbjct: 16 LDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPK 62
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 26.7 bits (58), Expect = 6.8
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 248 AIAKILELQNKYQILDRDISVIDM 271
A K+ L ++Y+++ + +VI++
Sbjct: 9 AAFKLEFLLDRYRVVRKGDAVIEI 32
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 26.5 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 237 IIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272
+ K+ EE++D+ AK+ +N +I D + D+R
Sbjct: 74 VDKVDEERYDIE-AKVT--KNITEIADLTQKIFDLR 106
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 26.6 bits (58), Expect = 7.0
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 176 YVITAFNHVRFAYLPILIGENIYKAVRS--FEVLSNI 210
+ AF FA L L+ EN KA++ F ++ I
Sbjct: 44 GLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEI 80
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 26.6 bits (59), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 237 IIKLPEEKFDVAIAKILELQNKYQILDRDISVIDMR 272
+ K+ EE++D+ AK+ +N +I D + D+R
Sbjct: 74 VDKVDEERYDIE-AKVT--KNITEIADLTQKIFDLR 106
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A* 1ktq_A* 5ktq_A* 3ktq_A* 1jxe_A* 4ktq_A* 1qtm_A*
2ktq_A* 1qss_A* 1qsy_A*
Length = 832
Score = 26.5 bits (57), Expect = 7.7
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 173 NNGYVITAFNHVRFAYLPILIGENIYKAVRSFEVLSNI--------AGITKF--VKAYNW 222
GYV T F R Y+P L K+VR A + K VK +
Sbjct: 716 RRGYVETLFGRRR--YVPDLEARV--KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPR 771
Query: 223 IAERRWDLHL--HNGIIIKLPEEKFDVAIAKILE 254
+ E + L H+ ++++ P+E+ + E
Sbjct: 772 LEEMGARMLLQVHDELVLEAPKERAEAVARLAKE 805
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 26.3 bits (57), Expect = 8.2
Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 164 NNSALYLIDNNGYVITAFNH---VRFAYLPILIGENIYKAVR--------SFEVLSNIAG 212
+ +++ N G ++ + L E I A E+ I G
Sbjct: 187 DTGYAFMVSNTGIFLSHPTQKNWIGEKSLSDFDVEEIKNAASDIREGIGGHVEIKDPITG 246
Query: 213 ITKFVKAYNWIAERRWDLHLHNGIIIKLPEEKFDVAIAKILELQNK 258
T + Y + + ++ +P+ + +A + +L+++
Sbjct: 247 KTVIM-FYEPVKTGDF------SFVLVVPK---EEMLAGVKDLRDR 282
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 26.2 bits (57), Expect = 9.0
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 170 LIDNNGYVITAFNHV 184
++D GY+IT HV
Sbjct: 59 IMDQRGYIITN-KHV 72
>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
tungstoenzyme, tungsten containing protein,
hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus}
SCOP: a.110.1.1 d.152.1.1 PDB: 1b4n_A*
Length = 619
Score = 26.1 bits (57), Expect = 10.0
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 191 ILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGII--IKLPEEKFDVA 248
+ +Y +R++ V K+ + ++ +R + L +G L E+K+D
Sbjct: 523 YKAADRVYSLIRAYWVR---EFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDEL 579
Query: 249 IAKILEL 255
+++ +
Sbjct: 580 LSEYYRI 586
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.329 0.145 0.437
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,824,360
Number of extensions: 138553
Number of successful extensions: 437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 24
Length of query: 304
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 212
Effective length of database: 3,462,782
Effective search space: 734109784
Effective search space used: 734109784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.8 bits)