BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781178|ref|YP_003065591.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (304 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 304

 Score =  619 bits (1597), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF 60
           MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF
Sbjct: 1   MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF 60

Query: 61  FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF 120
           FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF
Sbjct: 61  FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF 120

Query: 121 FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA 180
           FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA
Sbjct: 121 FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA 180

Query: 181 FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL 240
           FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL
Sbjct: 181 FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL 240

Query: 241 PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL 300
           PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL
Sbjct: 241 PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL 300

Query: 301 KRMR 304
           KRMR
Sbjct: 301 KRMR 304


>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 248

 Score = 28.5 bits (62), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 202 RSFEVLSNIAGITKFVKAYNWIAERRWD 229
           R+  VL +I G T F K + WI   RWD
Sbjct: 215 RASFVLFSIGGDTPFSKVWLWIPNMRWD 242


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 25.4 bits (54), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 118 LIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEI 151
           L+    + +Q+ +  +P + + ++ RL+PD +EI
Sbjct: 398 LVAHKELALQEGIACVPPVRNGKMLRLFPDPIEI 431


>gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 85

 Score = 22.7 bits (47), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 204 FEVLSNIAGITKFVKAY--------NWIAERRWDLHLHNGIIIKL 240
           F +L+   G T F+K +        ++ A R W +H   G++ KL
Sbjct: 38  FTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHHVVGLLKKL 82


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.145    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,260
Number of Sequences: 1233
Number of extensions: 8637
Number of successful extensions: 27
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 328,796
effective HSP length: 74
effective length of query: 230
effective length of database: 237,554
effective search space: 54637420
effective search space used: 54637420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 38 (19.2 bits)