BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (304 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781178|ref|YP_003065591.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 619 bits (1597), Expect = e-179, Method: Compositional matrix adjust. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 1 MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF 60 MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF Sbjct: 1 MFALNHRGLSIDRRLCLVIGMSLSLCCVLGLEEMRNFLNFCVFLEKVLPSYCGVILAIFF 60 Query: 61 FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF 120 FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF Sbjct: 61 FAIVGIYGASIGGHTRKVIDIVDSFIGFSIEKVRIIGNVETPEADIIHCLDLNTSTSLIF 120 Query: 121 FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA 180 FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA Sbjct: 121 FDAIKIQKQLLALPWIAHAEIRRLYPDTMEIRLTERHPYAIWQNNSALYLIDNNGYVITA 180 Query: 181 FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL 240 FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL Sbjct: 181 FNHVRFAYLPILIGENIYKAVRSFEVLSNIAGITKFVKAYNWIAERRWDLHLHNGIIIKL 240 Query: 241 PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL 300 PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL Sbjct: 241 PEEKFDVAIAKILELQNKYQILDRDISVIDMRLPDRLSVRLTTGSFIDRRDIVDKRDQEL 300 Query: 301 KRMR 304 KRMR Sbjct: 301 KRMR 304 >gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 248 Score = 28.5 bits (62), Expect = 0.15, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 202 RSFEVLSNIAGITKFVKAYNWIAERRWD 229 R+ VL +I G T F K + WI RWD Sbjct: 215 RASFVLFSIGGDTPFSKVWLWIPNMRWD 242 >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 9/34 (26%), Positives = 21/34 (61%) Query: 118 LIFFDAIKIQKQLLALPWIAHAEIRRLYPDTMEI 151 L+ + +Q+ + +P + + ++ RL+PD +EI Sbjct: 398 LVAHKELALQEGIACVPPVRNGKMLRLFPDPIEI 431 >gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter asiaticus str. psy62] Length = 85 Score = 22.7 bits (47), Expect = 8.4, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%) Query: 204 FEVLSNIAGITKFVKAY--------NWIAERRWDLHLHNGIIIKL 240 F +L+ G T F+K + ++ A R W +H G++ KL Sbjct: 38 FTILTTAKGFTAFIKGFISIALPIGSFPALRTWIIHHVVGLLKKL 82 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.329 0.145 0.437 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,260 Number of Sequences: 1233 Number of extensions: 8637 Number of successful extensions: 27 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 6 length of query: 304 length of database: 328,796 effective HSP length: 74 effective length of query: 230 effective length of database: 237,554 effective search space: 54637420 effective search space used: 54637420 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 38 (19.2 bits)