HHsearch alignment for GI: 254781179 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=478.48 Aligned_cols=294 Identities=39% Similarity=0.627 Sum_probs=273.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-------CCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 289836787127889999999999999879889996158656888875-------3998999925488434310235666
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILE 73 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~-------~~~D~vf~~lhG~~gEdg~iq~~le 73 (300)
T Consensus 5 vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le 84 (317)
T COG1181 5 VAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLE 84 (317)
T ss_pred EEEEECCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 99985775373069996589999987614871588732466327850310122202698778715588888706999999
Q ss_pred HHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC------HHHHHCCCCEEEEECCCCCCCCEEEECCH
Q ss_conf 432100231002332036500100002121000012132022200------01221058625643247764211432598
Q gi|254781179|r 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 (300)
Q Consensus 74 ~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~------~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~ 147 (300)
T Consensus 85 ~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~ 164 (317)
T COG1181 85 LLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVE 164 (317)
T ss_pred HHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEE
T ss_conf 70998760764453323509999889986786512356753345204788877414688789985873113679988350
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCC----CCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf 9999988630036688542233357884578873144----442002202554333311000011-22224586521166
Q gi|254781179|r 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLD 222 (300)
Q Consensus 148 ~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~----~~~~~~ei~~~~~~~~dy~~Ky~~-~~~~~~~Pa~l~~~ 222 (300)
T Consensus 165 ~d~~~~~--e~a~~~d~~vl~e~~~~~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~ 242 (317)
T COG1181 165 GDLQSAL--ELAFKYDRDVLREQGITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE 242 (317)
T ss_pred CCHHHHH--HHHHHHCCCCEECCCCCCCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEECCCCCCHH
T ss_conf 4369999--99998478512003776655898635886552444761681699869860001457898435378899988
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 65544444445775348764579999997689839999747265888223899999983999899999999975
Q gi|254781179|r 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 (300)
Q Consensus 223 ~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A 296 (300)
T Consensus 243 ~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~a 316 (317)
T COG1181 243 IHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVELA 316 (317)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99999999999998608887588879998789989999870899876535376779875998899999998602