HHsearch alignment for GI: 254781179 and conserved domain: COG1181

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=478.48  Aligned_cols=294  Identities=39%  Similarity=0.627  Sum_probs=273.6

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-------CCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf             289836787127889999999999999879889996158656888875-------3998999925488434310235666
Q gi|254781179|r    1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPDLAFNVLHGNFGEDGLVQAILE   73 (300)
Q Consensus         1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~-------~~~D~vf~~lhG~~gEdg~iq~~le   73 (300)
T Consensus         5 vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le   84 (317)
T COG1181           5 VAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLE   84 (317)
T ss_pred             EEEEECCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             99985775373069996589999987614871588732466327850310122202698778715588888706999999


Q ss_pred             HHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC------HHHHHCCCCEEEEECCCCCCCCEEEECCH
Q ss_conf             432100231002332036500100002121000012132022200------01221058625643247764211432598
Q gi|254781179|r   74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKD  147 (300)
Q Consensus        74 ~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~------~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~  147 (300)
T Consensus        85 ~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~  164 (317)
T COG1181          85 LLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVE  164 (317)
T ss_pred             HHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEE
T ss_conf             70998760764453323509999889986786512356753345204788877414688789985873113679988350


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCC----CCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf             9999988630036688542233357884578873144----442002202554333311000011-22224586521166
Q gi|254781179|r  148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLD  222 (300)
Q Consensus       148 ~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~----~~~~~~ei~~~~~~~~dy~~Ky~~-~~~~~~~Pa~l~~~  222 (300)
T Consensus       165 ~d~~~~~--e~a~~~d~~vl~e~~~~~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~  242 (317)
T COG1181         165 GDLQSAL--ELAFKYDRDVLREQGITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE  242 (317)
T ss_pred             CCHHHHH--HHHHHHCCCCEECCCCCCCEEEEEECCCCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEECCCCCCHH
T ss_conf             4369999--99998478512003776655898635886552444761681699869860001457898435378899988


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             65544444445775348764579999997689839999747265888223899999983999899999999975
Q gi|254781179|r  223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA  296 (300)
Q Consensus       223 ~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A  296 (300)
T Consensus       243 ~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~a  316 (317)
T COG1181         243 IHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVELA  316 (317)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             99999999999998608887588879998789989999870899876535376779875998899999998602