HHsearch alignment for GI: 254781179 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=100.00 E-value=0 Score=632.99 Aligned_cols=296 Identities=45% Similarity=0.736 Sum_probs=282.6
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 28983678712788999999999999987988999615865688887539989999254884343102356664321002
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~ 80 (300)
T Consensus 7 I~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~~~l~~~~~D~vf~~lHG~~GEDG~iQglLe~~~IPYt 86 (304)
T PRK01372 7 VAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPAAELKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYT 86 (304)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 89993678712899999999999988375997999828964677875339999999068999856499999998599835
Q ss_pred CCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHC
Q ss_conf 310023320365001000021210000121320222000--122105862564324776421143259899999886300
Q gi|254781179|r 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 (300)
Q Consensus 81 Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~ 158 (300)
T Consensus 87 Gs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ai~~-- 164 (304)
T PRK01372 87 GSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPLVVKPAREGSSVGVTKVKEADELPAALEL-- 164 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHH--
T ss_conf 799899877653899999999869998984998653139999876189879976688866653896698899999999--
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 36688542233357884578873144442002202554333311000011222245865211666554444444577534
Q gi|254781179|r 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 (300)
Q Consensus 159 ~~~~~~~vlVEefI~G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~al 238 (300)
T Consensus 165 a~~~~~~vLvE~~I~GrEitv~Vlg~~~lp~~eI-~~~~~fyDy~aKY~~~~s~~~~Pa~l~~~~~~~i~~~a~~~~~aL 243 (304)
T PRK01372 165 AFKYDDEVLVEKYIKGRELTVAVLGGKALPVIRI-VPPGEFYDYEAKYLAGDTQYLCPAGLPAELEAELQALALRAYKAL 243 (304)
T ss_pred HHHCCCCCEEEEEECCEEEEEEEECCCCCCEEEE-ECCCCCCCHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8744886254502565699999989977753899-459987577661255774110068999999999999999999984
Q ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 87645799999976898399997472658882238999999839998999999999751179
Q gi|254781179|r 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 (300)
Q Consensus 239 g~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~~A~~~r 300 (300)
T Consensus 244 g~~g~aRvDf~~~~-~g~~~~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~ii~~Al~~r 304 (304)
T PRK01372 244 GCRGWGRVDFMLDE-DGKPYLLEVNTSPGMTSHSLVPMAARAAGISFSELVVWILEDALCDR 304 (304)
T ss_pred CCCCEEEEEEEEEC-CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99736988999907-99789998339999874158999999819999999999999997459