HHsearch alignment for GI: 254781179 and conserved domain: PRK01966

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=100.00  E-value=0  Score=593.14  Aligned_cols=293  Identities=37%  Similarity=0.646  Sum_probs=265.0

Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---------------------------------
Q ss_conf             28983678712788999999999999987988999615865688887---------------------------------
Q gi|254781179|r    1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---------------------------------   47 (300)
Q Consensus         1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~---------------------------------   47 (300)
T Consensus         6 I~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (344)
T PRK01966          6 VALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLALPGFYEG   85 (344)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99995878821899999999999976150885999998379887725641111024542101234443222345532210


Q ss_pred             --HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH-----
Q ss_conf             --5399899992548843431023566643210023100233203650010000212100001213202220001-----
Q gi|254781179|r   48 --HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----  120 (300)
Q Consensus        48 --~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~-----  120 (300)
T Consensus        86 ~~~~~~D~vf~alHG~~GEDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~  165 (344)
T PRK01966         86 QLIIEVDVVFPVLHGPPGEDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREEAIAEV  165 (344)
T ss_pred             CCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf             00356789999068999767099999997599936884899998766999999999879998983998166623458999


Q ss_pred             HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC----CCCEEEECCCC
Q ss_conf             22105862564324776421143259899999886300366885422333578845788731444----42002202554
Q gi|254781179|r  121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPK  196 (300)
Q Consensus       121 ~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~----~~~~~ei~~~~  196 (300)
T Consensus       166 ~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~--a~~~~~~vlvEefI~GrE~tv~vl~~~~~~~~l~~~Ei-~~~  242 (344)
T PRK01966        166 EEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDL--AFEYDRKVLVEQGIKGREIECAVLGYNDEPVASVPGEI-VKD  242 (344)
T ss_pred             HHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHH--HHHCCCCCEEECCCCCEEEEEEEECCCCCEEEECCEEE-CCC
T ss_conf             986189879932899634325996899999999999--98639750575124448999999748994677311587-179


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             333311000011-2222458652116665544444445775348764579999997689839999747265888223899
Q gi|254781179|r  197 SDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP  275 (300)
Q Consensus       197 ~~~~dy~~Ky~~-~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p  275 (300)
T Consensus       243 ~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~-~g~~y~lEvNt~PGmT~~Sl~p  321 (344)
T PRK01966        243 NDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKALGCSGLARVDFFLTE-DGEIYLNEINTLPGFTPISMYP  321 (344)
T ss_pred             CCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHH
T ss_conf             875148881046897169667889999999999999999998199727989899908-9988999820899987547899


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999839998999999999751
Q gi|254781179|r  276 EMAAYAGYSFRELLLWMVEDAS  297 (300)
Q Consensus       276 ~~~~~~G~s~~~li~~ii~~A~  297 (300)
T Consensus       322 ~~a~~~G~s~~~li~~ii~~Al  343 (344)
T PRK01966        322 KLWEASGLSYPELIDRLIELAL  343 (344)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999809999999999999973