HHsearch alignment for GI: 254781179 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=100.00 E-value=0 Score=593.14 Aligned_cols=293 Identities=37% Similarity=0.646 Sum_probs=265.0
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---------------------------------
Q ss_conf 28983678712788999999999999987988999615865688887---------------------------------
Q gi|254781179|r 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------------------------- 47 (300)
Q Consensus 1 i~vl~GG~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~~~~~~~l~--------------------------------- 47 (300)
T Consensus 6 I~Vl~GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (344)
T PRK01966 6 VALLFGGRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLALPGFYEG 85 (344)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99995878821899999999999976150885999998379887725641111024542101234443222345532210
Q ss_pred --HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCCHH-----
Q ss_conf --5399899992548843431023566643210023100233203650010000212100001213202220001-----
Q gi|254781179|r 48 --HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----- 120 (300)
Q Consensus 48 --~~~~D~vf~~lhG~~gEdg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~~~----- 120 (300)
T Consensus 86 ~~~~~~D~vf~alHG~~GEDG~iQglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~ 165 (344)
T PRK01966 86 QLIIEVDVVFPVLHGPPGEDGTIQGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLTRSRREEAIAEV 165 (344)
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 00356789999068999767099999997599936884899998766999999999879998983998166623458999
Q ss_pred HHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC----CCCEEEECCCC
Q ss_conf 22105862564324776421143259899999886300366885422333578845788731444----42002202554
Q gi|254781179|r 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPK 196 (300)
Q Consensus 121 ~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~----~~~~~ei~~~~ 196 (300)
T Consensus 166 ~~~l~~P~iVKP~~~GSSiGvs~v~~~~el~~ai~~--a~~~~~~vlvEefI~GrE~tv~vl~~~~~~~~l~~~Ei-~~~ 242 (344)
T PRK01966 166 EEKLGLPVFVKPANLGSSVGISKVKNEEELEAALDL--AFEYDRKVLVEQGIKGREIECAVLGYNDEPVASVPGEI-VKD 242 (344)
T ss_pred HHHCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHH--HHHCCCCCEEECCCCCEEEEEEEECCCCCEEEECCEEE-CCC
T ss_conf 986189879932899634325996899999999999--98639750575124448999999748994677311587-179
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 333311000011-2222458652116665544444445775348764579999997689839999747265888223899
Q gi|254781179|r 197 SDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 (300)
Q Consensus 197 ~~~~dy~~Ky~~-~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p 275 (300)
T Consensus 243 ~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~lg~rg~~RiDf~~d~-~g~~y~lEvNt~PGmT~~Sl~p 321 (344)
T PRK01966 243 NDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKALGCSGLARVDFFLTE-DGEIYLNEINTLPGFTPISMYP 321 (344)
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHH
T ss_conf 875148881046897169667889999999999999999998199727989899908-9988999820899987547899
Q ss_pred HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999839998999999999751
Q gi|254781179|r 276 EMAAYAGYSFRELLLWMVEDAS 297 (300)
Q Consensus 276 ~~~~~~G~s~~~li~~ii~~A~ 297 (300)
T Consensus 322 ~~a~~~G~s~~~li~~ii~~Al 343 (344)
T PRK01966 322 KLWEASGLSYPELIDRLIELAL 343 (344)
T ss_pred HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999809999999999999973