HHsearch alignment for GI: 254781179 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=99.97 E-value=2.4e-28 Score=201.88 Aligned_cols=266 Identities=19% Similarity=0.256 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------------------CCHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 787127889999999999999879889996158---------------------65688887539989999254884343
Q gi|254781179|r 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGED 65 (300)
Q Consensus 7 G~s~E~~iSl~S~~~i~~aL~~~g~~v~~id~~---------------------~~~~~~l~~~~~D~vf~~lhG~~gEd 65 (300)
T Consensus 568 GqgiEFDY---c~vha~~aLr~~G~etImiN~NPETVSTDyD~sDrLYFEPlt~E~V~~I~~~E~p~gVivqfGGQt~ln 644 (1068)
T PRK12815 568 GQGIEFDY---MCVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPITLEDILNVAEAENIKGVIVQFGGQTAIN 644 (1068)
T ss_pred CCCCCCHH---HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 24424002---589999999968974899627843123674557735753687999999999858997999648823679
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCCC--HHHHHCCCCEEEEECCCCCCCCEEE
Q ss_conf 10235666432100231002332036500100002121000012132022200--0122105862564324776421143
Q gi|254781179|r 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIV 143 (300)
Q Consensus 66 g~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~~--~~~~~~~~P~ivKP~~ggsS~Gv~~ 143 (300)
T Consensus 645 --la~~L~~~gv~IlGts~~~Id~aEdR~~F~~ll~~l~i~~p~~~~~~~~~ea~~~a~~iGyPvlvRPSyvLgG~~m~i 722 (1068)
T PRK12815 645 --LAKPLEEAGLPILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATSEEEALAFAKRIGYPVLIRPSYVIGGQGMAV 722 (1068)
T ss_pred --HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
T ss_conf --999999769949827868864241399999999973899999635456679999998649977842443357742389
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCEEEE--CCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 259899999886300366885422333578845788731444-4200220--2554333311000011222245865-21
Q gi|254781179|r 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-SLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPA-KI 219 (300)
Q Consensus 144 v~~~~el~~~~~~~~~~~~~~~vlVEefI~G~E~~v~Vl~~~-~~~~~ei--~~~~~~~~dy~~Ky~~~~~~~~~Pa-~l 219 (300)
T Consensus 723 v~~~~eL~~y~~~a--~~~~~pvlIdkfl~g~E~evDai~Dg~~v~I~gImEHIE~AG-------VHSGDS~~v~Pp~~L 793 (1068)
T PRK12815 723 VYDEPALEAYLEEN--VQQLYPILIDQFIDGKEYEVDAISDGEDVTIPGIIEHIEQAG-------VHSGDSIAVLPPQSL 793 (1068)
T ss_pred ECCHHHHHHHHHHH--CCCCCCEEEEECCCCCEEEEEEEECCCCEEEEEEEECHHHCC-------CCCCCCEEEECCCCC
T ss_conf 75999999999851--578885562300054046889996499559999642113146-------656885488389878
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 1666554444444577534876457999999768983999974726588822389999998399989999999
Q gi|254781179|r 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 (300)
Q Consensus 220 ~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~i 292 (300)
T Consensus 794 s~~~~~~i~~~t~kia~~L~v~Gl~NiQfavk--~~~vyVIEvNpRAS----RTvPFvSKatG~pl~~iAtkv 860 (1068)
T PRK12815 794 SPEQQAKIRDQAIKIAKKLGFRGIMNIQFLLA--GDEIYVLEVNPRAS----RTVPFVSKATGVPLAKLATKV 860 (1068)
T ss_pred CHHHHHHHHHHHHHHHHHCEEECCEEEEEEEE--CCEEEEEEEECCCC----CCHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999996483545126999997--99899999618755----432667873298899999999