HHsearch alignment for GI: 254781179 and conserved domain: TIGR01235

>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=99.97  E-value=2e-30  Score=215.23  Aligned_cols=237  Identities=17%  Similarity=0.288  Sum_probs=191.0

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHH------------------------------------HHCCCCEEEECCCCCC
Q ss_conf             9999999998798899961586568888------------------------------------7539989999254884
Q gi|254781179|r   19 GKACASALEDAGFKVSQIDVDRSVGLVL------------------------------------AHLKPDLAFNVLHGNF   62 (300)
Q Consensus        19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l------------------------------------~~~~~D~vf~~lhG~~   62 (300)
T Consensus        11 AIRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDa----iHPGY   86 (1169)
T TIGR01235        11 AIRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDA----IHPGY   86 (1169)
T ss_pred             CHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE----EECCC
T ss_conf             02464231013872699965315745574023410011476310102687213047156989960078977----70885


Q ss_pred             C---CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC----CHHHHHCCCCEEEEECCC
Q ss_conf             3---431023566643210023100233203650010000212100001213202220----001221058625643247
Q gi|254781179|r   63 G---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG  135 (300)
Q Consensus        63 g---Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~----~~~~~~~~~P~ivKP~~g  135 (300)
T Consensus        87 GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~G  166 (1169)
T TIGR01235        87 GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVIIKASYG  166 (1169)
T ss_pred             CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             62248878999998689567379747775405768999888877887636886875259999999975699589872168


Q ss_pred             CCCCCEEEECCHHHHHHHHHHH-----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             7642114325989999988630-----0366885422333578-845788731444420022025543333110000112
Q gi|254781179|r  136 GSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL  209 (300)
Q Consensus       136 gsS~Gv~~v~~~~el~~~~~~~-----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~  209 (300)
T Consensus       167 GGGRGMRvvR~~~dv~~~~~rA~sEA~AAFG-nd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSV---QRR--hQ  240 (1169)
T TIGR01235       167 GGGRGMRVVRSEEDVADAFQRAKSEAKAAFG-NDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSV---QRR--HQ  240 (1169)
T ss_pred             CCCCCCEEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC---EEE--CC
T ss_conf             8972016860756799998887688731048-98069851024882078987634889878887507762---000--55


Q ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf             222458652-11666554444444577534876457999999768983999974726
Q gi|254781179|r  210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ  265 (300)
Q Consensus       210 ~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~  265 (300)
T Consensus       241 KVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpR  297 (1169)
T TIGR01235       241 KVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPR  297 (1169)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf             078867887788889999999999998742898887248855548893778998880