HHsearch alignment for GI: 254781179 and conserved domain: TIGR01235
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=99.97 E-value=2e-30 Score=215.23 Aligned_cols=237 Identities=17% Similarity=0.288 Sum_probs=191.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHH------------------------------------HHCCCCEEEECCCCCC
Q ss_conf 9999999998798899961586568888------------------------------------7539989999254884
Q gi|254781179|r 19 GKACASALEDAGFKVSQIDVDRSVGLVL------------------------------------AHLKPDLAFNVLHGNF 62 (300)
Q Consensus 19 ~~~i~~aL~~~g~~v~~id~~~~~~~~l------------------------------------~~~~~D~vf~~lhG~~ 62 (300)
T Consensus 11 AIRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDa----iHPGY 86 (1169)
T TIGR01235 11 AIRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDA----IHPGY 86 (1169)
T ss_pred CHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCE----EECCC
T ss_conf 02464231013872699965315745574023410011476310102687213047156989960078977----70885
Q ss_pred C---CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHCCCCCCCCEEECCCEEEECCCC----CHHHHHCCCCEEEEECCC
Q ss_conf 3---431023566643210023100233203650010000212100001213202220----001221058625643247
Q gi|254781179|r 63 G---EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKG 135 (300)
Q Consensus 63 g---Edg~iq~~le~~~ipy~Gs~~~~~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~----~~~~~~~~~P~ivKP~~g 135 (300)
T Consensus 87 GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~G 166 (1169)
T TIGR01235 87 GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVIIKASYG 166 (1169)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 62248878999998689567379747775405768999888877887636886875259999999975699589872168
Q ss_pred CCCCCEEEECCHHHHHHHHHHH-----CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 7642114325989999988630-----0366885422333578-845788731444420022025543333110000112
Q gi|254781179|r 136 GSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 (300)
Q Consensus 136 gsS~Gv~~v~~~~el~~~~~~~-----~~~~~~~~vlVEefI~-G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~ 209 (300)
T Consensus 167 GGGRGMRvvR~~~dv~~~~~rA~sEA~AAFG-nd~~yvEklie~pkHiEvQ~LGD~~GNVVHLFERDCSV---QRR--hQ 240 (1169)
T TIGR01235 167 GGGRGMRVVRSEEDVADAFQRAKSEAKAAFG-NDEVYVEKLIERPKHIEVQLLGDKHGNVVHLFERDCSV---QRR--HQ 240 (1169)
T ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCC---EEE--CC
T ss_conf 8972016860756799998887688731048-98069851024882078987634889878887507762---000--55
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 222458652-11666554444444577534876457999999768983999974726
Q gi|254781179|r 210 NSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 (300)
Q Consensus 210 ~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~ 265 (300)
T Consensus 241 KVvE~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvNpR 297 (1169)
T TIGR01235 241 KVVEVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVNPR 297 (1169)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 078867887788889999999999998742898887248855548893778998880