HHsearch alignment for GI: 254781179 and conserved domain: TIGR02291
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=99.36 E-value=7.1e-12 Score=96.24 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=114.3
Q ss_pred CCCHHCCCCCCCCEEECCCEEE-EC-CCCCHHHHHC--CCC-EEEEECCCCCCCCEEEEC---------------CHHHH
Q ss_conf 6500100002121000012132-02-2200012210--586-256432477642114325---------------98999
Q gi|254781179|r 91 MDKMRSKQVVSSCGVPVCPSIL-VN-RFTMDSQHLI--SPP-YVIKPLKGGSSLGIIVIK---------------KDQSI 150 (300)
Q Consensus 91 ~dK~~~k~~l~~~gIptp~~~~-~~-~~~~~~~~~~--~~P-~ivKP~~ggsS~Gv~~v~---------------~~~el 150 (300)
T Consensus 36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei 115 (320)
T TIGR02291 36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI 115 (320)
T ss_pred CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf 31367889987336711013010023466543466627889836726606798727997036688403541010154567
Q ss_pred HHHHHHHCCC-----CCCCCCCCCCCCCCC------------EEEEEECCCCCC-CEEEECCC-----------------
Q ss_conf 9988630036-----688542233357884------------578873144442-00220255-----------------
Q gi|254781179|r 151 PLDLLQSSSW-----NHGDQLLIEQYVDGI------------ELTCGVMGDASL-DVTEIAVP----------------- 195 (300)
Q Consensus 151 ~~~~~~~~~~-----~~~~~vlVEefI~G~------------E~~v~Vl~~~~~-~~~ei~~~----------------- 195 (300)
T Consensus 116 E~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGi 195 (320)
T TIGR02291 116 ERHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGI 195 (320)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 78888888777650799773688532010534477111345872689641861021002765678883021246024202
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf --------433331100001122224586521166655444444457753487645799999976898399997472658
Q gi|254781179|r 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 (300)
Q Consensus 196 --------~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG 267 (300)
T Consensus 196 DlaTG~t~~a~w~n~pi~~HPDTg~~~sglq~Ph--W~~ll~LAa~c~el~GL-GY~GvD~VLDke~G-PlvLELNARPG 271 (320)
T TIGR02291 196 DLATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPH--WEKLLKLAAECYELVGL-GYLGVDMVLDKEKG-PLVLELNARPG 271 (320)
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCC--HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCC-CEEEEECCCCC
T ss_conf 3114503212420676145838887535101667--77899999877543067-60021068745798-81786447887
Q ss_pred CCHHHHHHHHHHHCCCCH
Q ss_conf 882238999999839998
Q gi|254781179|r 268 MTPVSIFPEMAAYAGYSF 285 (300)
Q Consensus 268 lt~~s~~p~~~~~~G~s~ 285 (300)
T Consensus 272 L~-----IQIAN~~Gl~~ 284 (320)
T TIGR02291 272 LA-----IQIANDAGLLP 284 (320)
T ss_pred CH-----HHHHCCCCCCH
T ss_conf 21-----22313145336