HHsearch alignment for GI: 254781179 and conserved domain: TIGR02291

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=99.36  E-value=7.1e-12  Score=96.24  Aligned_cols=186  Identities=21%  Similarity=0.286  Sum_probs=114.3

Q ss_pred             CCCHHCCCCCCCCEEECCCEEE-EC-CCCCHHHHHC--CCC-EEEEECCCCCCCCEEEEC---------------CHHHH
Q ss_conf             6500100002121000012132-02-2200012210--586-256432477642114325---------------98999
Q gi|254781179|r   91 MDKMRSKQVVSSCGVPVCPSIL-VN-RFTMDSQHLI--SPP-YVIKPLKGGSSLGIIVIK---------------KDQSI  150 (300)
Q Consensus        91 ~dK~~~k~~l~~~gIptp~~~~-~~-~~~~~~~~~~--~~P-~ivKP~~ggsS~Gv~~v~---------------~~~el  150 (300)
T Consensus        36 DDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eei  115 (320)
T TIGR02291        36 DDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEI  115 (320)
T ss_pred             CCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHH
T ss_conf             31367889987336711013010023466543466627889836726606798727997036688403541010154567


Q ss_pred             HHHHHHHCCC-----CCCCCCCCCCCCCCC------------EEEEEECCCCCC-CEEEECCC-----------------
Q ss_conf             9988630036-----688542233357884------------578873144442-00220255-----------------
Q gi|254781179|r  151 PLDLLQSSSW-----NHGDQLLIEQYVDGI------------ELTCGVMGDASL-DVTEIAVP-----------------  195 (300)
Q Consensus       151 ~~~~~~~~~~-----~~~~~vlVEefI~G~------------E~~v~Vl~~~~~-~~~ei~~~-----------------  195 (300)
T Consensus       116 E~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGi  195 (320)
T TIGR02291       116 ERHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGI  195 (320)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             78888888777650799773688532010534477111345872689641861021002765678883021246024202


Q ss_pred             --------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf             --------433331100001122224586521166655444444457753487645799999976898399997472658
Q gi|254781179|r  196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG  267 (300)
Q Consensus       196 --------~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~~d~~~g~~~~lEvN~~PG  267 (300)
T Consensus       196 DlaTG~t~~a~w~n~pi~~HPDTg~~~sglq~Ph--W~~ll~LAa~c~el~GL-GY~GvD~VLDke~G-PlvLELNARPG  271 (320)
T TIGR02291       196 DLATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPH--WEKLLKLAAECYELVGL-GYLGVDMVLDKEKG-PLVLELNARPG  271 (320)
T ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCC--HHHHHHHHHHHHHHCCC-CCCCEEEEEECCCC-CEEEEECCCCC
T ss_conf             3114503212420676145838887535101667--77899999877543067-60021068745798-81786447887


Q ss_pred             CCHHHHHHHHHHHCCCCH
Q ss_conf             882238999999839998
Q gi|254781179|r  268 MTPVSIFPEMAAYAGYSF  285 (300)
Q Consensus       268 lt~~s~~p~~~~~~G~s~  285 (300)
T Consensus       272 L~-----IQIAN~~Gl~~  284 (320)
T TIGR02291       272 LA-----IQIANDAGLLP  284 (320)
T ss_pred             CH-----HHHHCCCCCCH
T ss_conf             21-----22313145336