HHsearch alignment for GI: 254781179 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=100.00 E-value=0 Score=330.65 Aligned_cols=192 Identities=31% Similarity=0.626 Sum_probs=172.6
Q ss_pred CCCCCEEECCCEEEECCCCC------HHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 02121000012132022200------012210586256432477642114325989999988630036688542233357
Q gi|254781179|r 99 VVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 (300)
Q Consensus 99 ~l~~~gIptp~~~~~~~~~~------~~~~~~~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~vlVEefI 172 (300)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~--~~~~~~vlVEefi 78 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVTSREELQSAIEEA--FQYDNKVLIEEAI 78 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH--HHCCCCEEEEECC
T ss_conf 95565999999089825323435799999865998899989999866879995846879999998--7459807999856
Q ss_pred CCCEEEEEECCCC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 8845788731444---4200220255433331100001122224586521166655444444457753487645799999
Q gi|254781179|r 173 DGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 (300)
Q Consensus 173 ~G~E~~v~Vl~~~---~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~~rvDf~ 249 (300)
T Consensus 79 ~G~E~~v~vl~~~~~~~~~~~e~-~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aLg~~g~~rvD~~ 157 (201)
T pfam07478 79 EGREIECAVLGNEDLEVSPVGEI-RLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDFF 157 (201)
T ss_pred CCCEEEEEEEECCCEEEEEEEEE-ECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 69679999970898089875899-43775026768013687237615668599999999999999998488760579999
Q ss_pred EECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 976898399997472658882238999999839998999999999
Q gi|254781179|r 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 (300)
Q Consensus 250 ~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~~ii~ 294 (300)
T Consensus 158 ~d~-~g~~~vlEvN~~Pg~~~~s~~~~~a~~~G~sy~~l~~~iv~ 201 (201)
T pfam07478 158 LTE-DGEIYLNEVNTMPGFTSISLYPRMWAAAGLSYPDLIDQLIE 201 (201)
T ss_pred ECC-CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 968-99499999549799986769999999819999999999859