HHsearch alignment for GI: 254781179 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.97 E-value=3.3e-30 Score=213.74 Aligned_cols=181 Identities=20% Similarity=0.301 Sum_probs=141.0
Q ss_pred CCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHC-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 365001000021210000121320222000--12210-586256432477642114325989999988630036688542
Q gi|254781179|r 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 (300)
Q Consensus 90 ~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~-~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~v 166 (300)
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~--~~~~~~v 78 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAF--KWLKNQI 78 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHH--HHCCCCE
T ss_conf 97889999999987979799899889999999999808983899678899984558860637777888888--6348737
Q ss_pred CCCCCCC---CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 2333578---8457887314444200220255433331100001122224586521166655444444457753487645
Q gi|254781179|r 167 LIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 (300)
Q Consensus 167 lVEefI~---G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~ 243 (300)
T Consensus 79 lvqefI~~~~~~dirv~vi~~~~~~~~~~~~~~~---~~~~n~~~g~~~--~~~~l~~----e~~e~a~~a~~algl-~~ 148 (190)
T pfam08443 79 LVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEG---DFRTNLHRGGVA--EPYQLSQ----EEEEIAIKAAQAMGL-DV 148 (190)
T ss_pred EEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC---CCCCCCCCCCEE--CCCCCCH----HHHHHHHHHHHHHCC-CE
T ss_conf 7555660478854899996063367899974667---621432468624--5876688----999999999997389-97
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 79999997689839999747265888223899999983999899999
Q gi|254781179|r 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 (300)
Q Consensus 244 ~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~ 290 (300)
T Consensus 149 ~gVD~~~~~-~g-~~vlEvN~~Pg~~~------~~~~~g~~i~~~i~ 187 (190)
T pfam08443 149 LGVDIFRSK-RG-LLVCEVNSSPGLKG------IERTTGINIAIKLI 187 (190)
T ss_pred EEEEEEEEC-CC-EEEEEECCCCCCHH------HHHHHCCCHHHHHH
T ss_conf 999999979-96-79999669846047------89887949999998