HHsearch alignment for GI: 254781179 and conserved domain: pfam08443

>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.97  E-value=3.3e-30  Score=213.74  Aligned_cols=181  Identities=20%  Similarity=0.301  Sum_probs=141.0

Q ss_pred             CCCCHHCCCCCCCCEEECCCEEEECCCCCH--HHHHC-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             365001000021210000121320222000--12210-586256432477642114325989999988630036688542
Q gi|254781179|r   90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL  166 (300)
Q Consensus        90 ~~dK~~~k~~l~~~gIptp~~~~~~~~~~~--~~~~~-~~P~ivKP~~ggsS~Gv~~v~~~~el~~~~~~~~~~~~~~~v  166 (300)
T Consensus         1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~--~~~~~~v   78 (190)
T pfam08443         1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAF--KWLKNQI   78 (190)
T ss_pred             CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHH--HHCCCCE
T ss_conf             97889999999987979799899889999999999808983899678899984558860637777888888--6348737


Q ss_pred             CCCCCCC---CCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             2333578---8457887314444200220255433331100001122224586521166655444444457753487645
Q gi|254781179|r  167 LIEQYVD---GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI  243 (300)
Q Consensus       167 lVEefI~---G~E~~v~Vl~~~~~~~~ei~~~~~~~~dy~~Ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~g~  243 (300)
T Consensus        79 lvqefI~~~~~~dirv~vi~~~~~~~~~~~~~~~---~~~~n~~~g~~~--~~~~l~~----e~~e~a~~a~~algl-~~  148 (190)
T pfam08443        79 LVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEG---DFRTNLHRGGVA--EPYQLSQ----EEEEIAIKAAQAMGL-DV  148 (190)
T ss_pred             EEEEEEECCCCCEEEEEEECCCEEEEEEEECCCC---CCCCCCCCCCEE--CCCCCCH----HHHHHHHHHHHHHCC-CE
T ss_conf             7555660478854899996063367899974667---621432468624--5876688----999999999997389-97


Q ss_pred             EEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             79999997689839999747265888223899999983999899999
Q gi|254781179|r  244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL  290 (300)
Q Consensus       244 ~rvDf~~d~~~g~~~~lEvN~~PGlt~~s~~p~~~~~~G~s~~~li~  290 (300)
T Consensus       149 ~gVD~~~~~-~g-~~vlEvN~~Pg~~~------~~~~~g~~i~~~i~  187 (190)
T pfam08443       149 LGVDIFRSK-RG-LLVCEVNSSPGLKG------IERTTGINIAIKLI  187 (190)
T ss_pred             EEEEEEEEC-CC-EEEEEECCCCCCHH------HHHHHCCCHHHHHH
T ss_conf             999999979-96-79999669846047------89887949999998