BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] (300 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 320 Score = 239 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V VLA LKPD+ FN LHG Sbjct: 18 VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + + Sbjct: 78 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D ++DV EI FY Y+ KY + STHV PAKI +IY+++Q +A AH+AIGC Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMT S+ P++A AG SF ELL WMVEDAS Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317 Query: 298 CLR 300 CLR Sbjct: 318 CLR 320 >gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 299/299 (100%), Positives = 299/299 (100%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ Sbjct: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV Sbjct: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR Sbjct: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR Sbjct: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 >gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 308 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++QRLA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 308 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV S +VNRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GF V++IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++++E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q L+ AHQAIGC Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099] gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 308 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV S + NRF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYVIKP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQA+GC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188] Length = 308 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V VLA LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V S+L+NRF + + Sbjct: 66 PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQ+ P ++ S+ WN+G ++L+E+Y+ G ELTC Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +DV EI FY Y+ KY + S+HV PAKI +IY+++Q +A AH+AIGC Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF ELL WMVEDAS Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 308 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G+ V S + +RF + + Sbjct: 66 PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P +L SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5] Length = 308 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+++L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614] Length = 308 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 220/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSL+SGK CA ALE+AG++V+++DVDR++ VL LKPD+ FN LHG Sbjct: 6 VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV ++VNR + Sbjct: 66 PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D+L+ E+++ G ELTC Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L V +I FY Y+ KY+ S H+LPAKI +Y+ ++ LA AHQA+GC Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S ++ LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56] Length = 308 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GF+V+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W +G+++L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 337 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 35 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 95 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334 Query: 298 CLR 300 CLR Sbjct: 335 CLR 337 >gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771] Length = 308 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S +VNRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VTE+ +FY Y+ KY+ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 306 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG ACA ALE G++VS++DV R V VLA L+PD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDASCL Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305 Query: 300 R 300 R Sbjct: 306 R 306 >gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 308 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV S ++NRF S Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 308 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA LE G++V+++DV R VG VLA LKPD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V S G PV S + +RF + Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++ + QS P ++ SS W +GD +++E+Y+ G ELTC Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI FY Y+ KY + S H PAK+ +IY+++Q LA AHQ IGC Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060] gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060] Length = 307 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE GF+++ IDV R++ VLA ++PD+AFN LHG Sbjct: 5 VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV +VNRF S Sbjct: 65 PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS+G++++++ +S P L W++GD++L E Y+ G ELTC Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I ++Y Y+ KY+ S HVLPA+I IY+ V+ LA AHQA+GC Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AGYSF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83] Length = 308 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021] gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti 1021] gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C] Length = 308 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV R V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+Y+ G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA+I +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58] gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58] Length = 308 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R V VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP++ GSS G++++K+DQS P +L SS W G+Q+++E+Y+ G ELTCG Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA I IY+++Q LA +AHQAIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100] Length = 309 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+ACA ALE G++V++IDV R + LA LKPD AFN LHG Sbjct: 7 IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K + + GVPV ++ + Sbjct: 67 KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +HL+ PPYV+KP+ GSS+G+ +++ D P L + W HGD +L+E+YV G ELTC Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD +L + EI + FY YE KY+ S H+LPA++ +IY+ +Q++A AH A+G Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245 Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF D + ++ LE+N QPGMT S+ PE+AA+AG SF EL+ W+VE+A Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305 Query: 297 SCLR 300 SC R Sbjct: 306 SCNR 309 >gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 307 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA AL GF+V+++DVDR +G LA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+ + V+R Sbjct: 65 RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKPL GSS G+ ++++DQ+ P L S W G+++L+E Y+ G ELTC Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ + DV EI +Y Y+ KY S H+LPA++ +IY+ VQ L+ AH+A+GC Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMV+DAS Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42] gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 308 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ +DV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV S ++NRF + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP++ GSS G++++ +DQ+ P ++ S W++G+ +L+E+YV G ELTCG Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTE+ +FY Y+ KY++ S HV+PAKI +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3] Length = 308 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G+KV+++DV R + VL L+PD+AFN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV ++NRF S Sbjct: 66 PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E+Y+ G ELTCG Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VTE+ +FY Y+ KY++ S HV+PA+I IY+++Q LA +AH+AIGC Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMTP S+ PEMAA+AG SF L+ WMVEDAS Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2] gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2] Length = 307 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG ACA ALE GF+V+ +DVDR + LA L+PD A N LHG Sbjct: 5 VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV + + RF Sbjct: 65 RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KPL GSS G+I+++ DQ+ P L W +GD +L+E++V G ELTC Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + VTEI +Y Y+ KY + S H+LPA + +Y+ VQ LA +AH+A+GC Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PE+AAYAG SF EL+ WMVEDAS Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419] Length = 308 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSG ACA ALE G++V+++DV V VL L+PD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V + G+PV +++++R + + Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH + PPYV+KP++ GSS G++++K+DQS P ++ SS W +GD++++E+YV G E TCG Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY S HV+PA++ +IY+++Q LA AHQAIGC Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMA +AG F E L WMVEDAS Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305 Query: 298 CLR 300 CLR Sbjct: 306 CLR 308 >gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 308 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER VSLSSGKACA ALE G++V+++DV+R V LA LKPD+ FN LHG Sbjct: 6 VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV S+++NRF + Sbjct: 66 PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PYV+KP++ GSS G++++K++Q+ P ++ SS W +GD++++E+Y+ G ELTCG Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI FY Y+ KY++ S HV+PA+I ++Y+++Q LA AHQAIGC Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FD ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305 Query: 298 CLR 300 C R Sbjct: 306 CSR 308 >gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b] Length = 311 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER +SL SG ACA ALE GF+V+++DV R V VLA LKPD+AFN LHG Sbjct: 9 VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE L IPYTHSG+LAS+L+M K +K V+++ GVPV +++R Sbjct: 69 RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+ ++K+ +S P L ++ W HGD +L E +VDG ELTC Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +FY ++ KY+ S HVLPA + +IY+EVQ+LA AH+A+GC Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PEMAA+AGYSF L+ WMVEDAS Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308 Query: 298 CLR 300 C R Sbjct: 309 CDR 311 >gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130] Length = 316 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLS+G +CA ALE G++V+++DVDR+V LA LKPD+AFN LHG Sbjct: 14 VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V G+PV + +++R Sbjct: 74 PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ +D+S P L S W +GD +++E+++ G ELTC Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI +Y Y+ KY+ STHVLPA+I +IY+++Q L+ AH+AIGC Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF D + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313 Query: 298 CLR 300 C R Sbjct: 314 CQR 316 >gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1] Length = 321 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V LA L+PD+AFN LHG Sbjct: 19 VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V + GVPV + L +R Sbjct: 79 PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS G++++++DQ P L W +GD ++IE++V G ELTC Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L+V EI FY Y+ KY S+H++PA +P D+ +++Q + AH A+GC Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D +V WLE+N QPGMT S+ P++AA +G+SF ELL WMVEDAS Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318 Query: 298 CLR 300 C R Sbjct: 319 CRR 321 >gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199] Length = 306 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ CA AL AG+KVS+IDVDR + L +KPD+ FN LHG Sbjct: 8 VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L +L IPYTHSG+ ASA++MDK +K V + G+ +V D Sbjct: 68 PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 ++PPYVIKP+ GSS+G+ +++ + W GD +L+E+YV G ELT Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVR---EGDNYRPTAEDWPFGDAVLVERYVPGRELTVA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + FY Y+ KY+ S H+LPA +P +I ++ +A AH+AIGC Sbjct: 185 VWDGEA-MEVTEITSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIGC 243 Query: 241 RGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + + LEIN QPGMTP S+ PE AA+ G SF EL+ MVEDA Sbjct: 244 RGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDAR 303 Query: 298 CL 299 C Sbjct: 304 CD 305 >gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242] Length = 307 Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+ERE+SL SG+ACA ALE+ ++VS++DV VLA L+PD+AFN LHG Sbjct: 5 VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELL IPYTHSG+LAS+++M K +K V+++ GVPV +V+R Sbjct: 65 KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS G+ +I + P L + W HGD +L EQ++ G ELTC Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI +Y Y KY+ S HVLPA + +IY+EVQ LA AH+A+GC Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + ++ LE+N QPGMT S+ PEMAAYAG+SF EL+ WMVEDAS Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CDR 307 >gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1] Length = 308 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 208/303 (68%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGK CA AL G++V++ID R + + +KPD+AFN LHG Sbjct: 7 VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V + G+PV S++V R Sbjct: 67 RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +++ + P L S+ WN GD+++ E+Y+ G ELTC Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ + + + FY YE KY + S H++PA I DIY EVQR+ AH+A+GC Sbjct: 187 VMGE-EIFGVTEIIANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD P ++ LE+N QPGMTP S+ PE+A AGYS+ EL+ WMVE+AS Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305 Query: 298 CLR 300 C R Sbjct: 306 CDR 308 >gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814] Length = 302 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 133/300 (44%), Positives = 190/300 (63%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG SSEREVSLSSG+ A A + GF V +ID+ R + L PD+ N LHG Sbjct: 4 VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V + G+ V + + + + Sbjct: 64 PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP+ GSS G++++ + + P L W GD +L+EQ++ G ELT Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V D+Y Y KY + S HV+PA+I + + A +AH A+GC Sbjct: 184 V-MGNEALAVTEITTLRDYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG+SRSDF +D ++++ LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302 >gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633] Length = 304 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 138/299 (46%), Positives = 191/299 (63%), Gaps = 2/299 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S ER+VSL SG+ ALE G++VS ID D L +KPD+ FN LH Sbjct: 5 VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG VQ +L+ L PYTHSG+ ASAL+MDK R+K V+ G+ L++RF Sbjct: 65 GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 H++ PPYV KP GSS+G++++ + + P +L S W + +++LIE+++ G ELT Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 VM VPK+ FY Y+ KYS S H LPA +P ++ E A AHQ +G Sbjct: 185 AVM-GDKPLTVTEIVPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG++RSDF +DP + V+ LEIN QPGMTP S+ PE AA+ G F +L+ WMVE+A+C Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302 >gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia alexandrii DFL-11] Length = 327 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 216/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE+AG++VS++DVDR+V VL L+PD+AFN LHG Sbjct: 25 VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV +VNR + Sbjct: 85 PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V D +L V +I +FY ++ KY+ S H+LPAKI +Y+ + LA AHQA+GC Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S + LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324 Query: 298 CLR 300 C R Sbjct: 325 CCR 327 >gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 311 Score = 225 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 224/300 (74%), Positives = 270/300 (90%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG Sbjct: 12 VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS Sbjct: 72 GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI KSDFY+Y+ KYSS S+HVLPA IP I +EV+R++ +AHQAIGC Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311 >gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2] Length = 307 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR + L+ ++PD+ FN LHG Sbjct: 12 VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+ + G+P+ S L + + Sbjct: 72 RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ +++ + P L + +++E Y G ELT Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQLGADMP----EVVMVETYAPGRELTVS 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC Sbjct: 188 VMGERALAVTDII--TTGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AA G SF EL WMVEDASC Sbjct: 246 RGLSRTDFRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 NR 307 >gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1] gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1] Length = 308 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSG +CA ALE G++VS++DV R V VL+ LKPD+AFN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE L IPYTHSG+LASAL+MDK +K V S G+PV S ++NRF + Sbjct: 66 PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H + PPYV+KP+ GSS G++++++ QS P +L S+ W +G+++++E+Y+ G ELTC Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L V EI FY Y+ KY+ S HV PA+I +IY++++RLA AHQAIGC Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D P + WLEIN QPGMTP S+ P++AA AG F LL WMVEDAS Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CPR 308 >gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4] Length = 309 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 218/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ CA+ALE G+KV+++DVDR + VLA L+PD+AFN LHG Sbjct: 7 VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++ G+PV ++VNRF + Sbjct: 67 PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+I++K+DQ P L W + D L+ E+++ G ELTC Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMG+ L V E+ + FY ++ KY+ S H+LPAKI +Y+E+Q+L+ AHQA+GC Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD S + LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306 Query: 298 CLR 300 C R Sbjct: 307 CCR 309 >gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 312 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL++G CA ALE AG+KV+++DV V VL LKPD+ FN LHG Sbjct: 10 VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L IPYTHSG+ ASAL+MDK SK V + G+PV S ++NR S Sbjct: 70 PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G+++++++Q+ P ++ SS W +GD++++E+YV G ELTC Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +MG+ +L VTEI FY Y+ KY + S HV PA+I +Y++++RLA AHQAIGC Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF +D + +V WLEIN QPGMTP S+ PEMA AG+SF E + WMVEDAS Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309 Query: 298 CLR 300 C R Sbjct: 310 CRR 312 >gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 161/303 (53%), Positives = 215/303 (70%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S EREVSL SG CA ALE+ G++V+++DVDR V VLA LKPD+A N+LHG Sbjct: 5 VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV LV R Sbjct: 65 CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GGSS+G+ ++K+DQ P L + W G+ L+ E ++ G+ELTCG Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV FY YE KY++ S H+LPA++ IY++V+ LA AH+A+GC Sbjct: 185 VMGDRALDVI-EVEAVHGFYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243 Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISR+DF +D P + + LE+N QPGMT S+ P+MAA+AG SF EL+ WMVEDA+ Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303 Query: 298 CLR 300 R Sbjct: 304 LDR 306 >gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1] gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSG+ACA ALE G++V++IDVDR++ VLA KPD+AFN LHG Sbjct: 6 VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV +V+R ++ S Sbjct: 66 PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H ++PPYV+KP+ GSS G++++K+D P L W + D L+ E+Y+ G ELTC Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V +I FY YE KY+ S H+LPAKI IY+EVQ+L AHQA+GC Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305 Query: 298 CLR 300 C R Sbjct: 306 CCR 308 >gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10] Length = 304 Score = 222 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 147/301 (48%), Positives = 197/301 (65%), Gaps = 2/301 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ER+VSL +G ACA L DAG++V +ID R + LA PD+ FN LHG Sbjct: 5 IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDGLVQ +LE PYTHSG+LASAL+MDK ++K V+ + G+P I+ NRF Sbjct: 65 EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV KP GSS+G+ ++ + + P L S++W GD++LIE+YV G ELT Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM D +L P + FY YE KY++ S H+LPA I +I + LA AH+A+GC Sbjct: 185 VMEDRALC-VTEIKPNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243 Query: 241 RGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG++RSDF +D + + LEIN QPGMTP S+ PE A Y G F +L+ WM E+ASC Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303 Query: 300 R 300 R Sbjct: 304 R 304 >gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM 2831] Length = 307 Score = 222 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKACA ALE G++V+++DV + VL L+PD AFN LHG Sbjct: 5 VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V +VNR Sbjct: 65 PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS+G+I+++ +S P +L S W G+Q+L E Y+ G ELTCG Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V E+ D+Y Y+ KY+ S HVLPA++ ++Y+ VQ L+ AHQA+GC Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PEMAA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444] Length = 306 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 136/300 (45%), Positives = 195/300 (65%), Gaps = 1/300 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER VSLSSG+ A+A AG+ V++IDV R + LA +PD+ N LHG Sbjct: 8 VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V S G+ V V R + Sbjct: 68 PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYV+KP+ GSS G++++++ + P L +W +GD L+ E+Y+ G ELT Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD + D+Y ++ KY++ S HV+PA +P + + A LAH+A+GC Sbjct: 188 VLGDRA-LAVTEITTLRDYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG +RSDF +D ++ LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306 >gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256] Length = 308 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 134/302 (44%), Positives = 193/302 (63%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SGK A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ YTHSG++ S +++DK +KQ + G+P+ +V+ ++ S Sbjct: 68 VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +++ D + + + W D+LL E ++ G ELT Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD +L VTE+ V KS FY Y+ KY+ + HV PA +P D+ + ++ LA AH+ + Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + EL+ +VE+A Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306 Query: 297 SC 298 Sbjct: 307 LT 308 >gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506] Length = 307 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSER VSL SG+ACA+ALE GF+VS++DVDR V LA LKPD+AFN LHG Sbjct: 5 VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV ++ R + Sbjct: 65 PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H SPPYVIKP+ GSS G+I++++DQ P L S W G+ LL+EQ+V G ELTC Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +LDV EI FY Y+ KYS S H++PA+IP D+ +++Q + LAH+AIGC Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244 Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++RSDF +D +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CER 307 >gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4] gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4] Length = 300 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 162/298 (54%), Positives = 217/298 (72%), Gaps = 3/298 (1%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 GG SSER VSL+SG CASALE+ G++V+++DV R + VL LKPD+ FN LHG FGED Sbjct: 3 GGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFGED 62 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 G +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV + ++RF + + H I Sbjct: 63 GTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHPIE 122 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 PPYV+KP++ GSS G++++K+DQS P +L SS W +GD +++E YV G ELTCGVM Sbjct: 123 PPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMDGK 182 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +L VTE+ + FY Y+ KY++ STHV+PA++ IY+++Q L+ AH AIGCRG+SR Sbjct: 183 ALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGVSR 242 Query: 246 SDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SDF +D + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R Sbjct: 243 SDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300 >gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264] Length = 311 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+SSER+VSLSSGK CA ALE G +V+++D R + VLA LKPD+ N LHG Sbjct: 10 VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V L +R + + Sbjct: 70 EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I PPYVIKP GSS+G+ ++++ P S SW +GD +++E Y+ G EL Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREG-DAPQPEPGSDSWTYGDLVMVEPYIPGKELAVA 188 Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+A+ P FY YE KY+ S H LPA +P +++ R + AH A Sbjct: 189 VIGEATGPRALTVTDITPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHAA 248 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG+SRSDF +D + ++ LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDAS Sbjct: 249 LGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDAS 308 Query: 298 CLR 300 C R Sbjct: 309 CPR 311 >gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta ATCC 11568] Length = 312 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSLSSG+ CA ALE KV+++D R + VL LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V L +R + S Sbjct: 70 KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I PPYV+KP GSS+G+ V ++ + P+ + + W +GDQ+++E ++ G EL Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189 Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+A+ P FY YE KY+ S HVLPA++P ++ + R A LAH A Sbjct: 190 VIGEATGPRALTITDITPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHAA 249 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG+SR+DF +D ++ + LE+N QPGMTP S+ PE AA+ G +REL+ WMVEDAS Sbjct: 250 MGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDAS 309 Query: 298 CLR 300 C R Sbjct: 310 CPR 312 >gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001] Length = 307 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I++++++S P +L S W +G+++L E Y+ G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062] Length = 307 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +ER VSLSSGK CA ALE AG++V+++DVDR++ VL LKPD+AFN LHG Sbjct: 5 VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV S++V+R Sbjct: 65 PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP+ GSS G++++K+ Q P L W +G+ L++E+Y+ G ELTC Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V EI +Y Y+ KY S H+LPA+I +Y+E+Q+ + AH A+GC Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG++R+DF F+ ++ LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304 Query: 298 CLR 300 C R Sbjct: 305 CGR 307 >gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1] Length = 312 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 187/304 (61%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG A ALE G KV++ID+DR V L LA KPD+ FN LHG Sbjct: 7 IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+ + I+V ++ + Sbjct: 67 TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ +IK+ + + + + S W LL E ++ G ELT Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V VP S FY YE KY+ +TH+ PA +P DI + R+A AH+ + Sbjct: 187 VAV-LGNRALGVTELVPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D + ++ LE+N QPGMTP+S+ PE A + G ++ +L+ +V++A Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305 Query: 297 SCLR 300 + Sbjct: 306 LAGK 309 >gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4] Length = 307 Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL LKPD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B] Length = 308 Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+ FN LHG Sbjct: 13 VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK G+PV S+L ++ + + Sbjct: 73 RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+I+PPYV+KP GSS+GI ++ + + P L ++++E Y G E+T Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQLSDEMPA----RVMVETYAPGREMTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA +P +I A AH +GC Sbjct: 189 VMGDRALCVTDIL--TDGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306 Query: 299 LR 300 R Sbjct: 307 ER 308 >gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217] Length = 296 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 190/301 (63%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + + Sbjct: 62 WGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRAG 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV+KP GSS+G+ +++ + P L D +++E Y G ELT V Sbjct: 122 HVMPPPYVVKPYNEGSSVGVYLVEAGANRPPALSDDMP----DVVMVESYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +GD +L VT+I +Y Y+ KY S HV+PA +P +I+ A AH+ +GCR Sbjct: 178 IGDRALTVTDIL--TEGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE A G SF EL WMVEDASC Sbjct: 236 GVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASCN 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1] Length = 307 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 297 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 142/301 (47%), Positives = 194/301 (64%), Gaps = 7/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL GF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++ + G+P+ PS++V + + Sbjct: 62 WGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVVA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV KP GSS+GI ++ ++ + P L + D +++E+YV G ELT V Sbjct: 122 HVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAAMP----DHVMVEKYVAGRELTVTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD + + +Y Y+ KY S HVLPA IP DI+ A AH A+GCR Sbjct: 178 MGDRA-LTVTEIMTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGCR 236 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R+D+ +D +F LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 237 GVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASCD 296 Query: 300 R 300 R Sbjct: 297 R 297 >gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506] Length = 306 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+ACA A E G++V+++DV R + VL LKPD+A N LHG Sbjct: 5 VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++ VPV +V R Sbjct: 65 PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP+ GSS+G+ +IK+DQ P L W HGD LL E+Y+ G+ELTC Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L V FY YE KY+ S H+LPA+I ++Y++V+ LA AH+A+GC Sbjct: 185 VMGDEALGVI-EIQSDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRALGC 243 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RGISRSDF +D + + LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVEDAS Sbjct: 244 RGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVEDAS 303 Query: 298 CLR 300 R Sbjct: 304 LDR 306 >gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4] gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4] Length = 307 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA+ALE G++V+++DV + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 307 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 144/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG+ CA AL AG+ V++ID + L L PD+ FN LHG Sbjct: 12 VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K + G+PV S L ++ + + Sbjct: 72 RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GSS+G+ ++ + P L + +++E Y G ELTC Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQLSDEMP----EVVMVETYAPGRELTCT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VTEI + +Y Y KY++ S HV PA++P I + ++ A AH+A+GC Sbjct: 188 VMGDRALCVTEIV--TTGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AA G SF +L WMVEDASC Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 DR 307 >gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 296 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 144/301 (47%), Positives = 193/301 (64%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL G++V ++D + L + PD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK G+PV SIL ++ T+ + Sbjct: 62 WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+I+PPYV+KP GSS+GI ++ + + P L S + +++E Y G ELT V Sbjct: 122 HVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDSMP----ETVMVEAYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VT+I +Y YE KY+ S H PAK+P +I + A AH+ +GCR Sbjct: 178 MGDRALGVTDII--TDGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D K + LE N QPGMTP S+ PE A G SF +L WMVEDASC+ Sbjct: 236 GVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASCV 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2] Length = 308 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 206/303 (67%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V+++DV R + VLA LKPD+AF LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYTHSG+LAS+L+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PPYVIKP+ GSS+G+ ++ ++ + P L W+HG++LL+E+YV G ELTC Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + VP FY YE KYS S HVLPA I +Y+EV+RL AH ++GC Sbjct: 187 VIKGEA-SEVTEIVPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684] Length = 305 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 179/303 (59%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG S+EREVSL +G A ALE+ G+ V ID D+++ L + D+ F +HG Sbjct: 8 IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG +Q +LEL++IPYT SG+LASAL++DK +K++V+ GV + LV+ Sbjct: 68 RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVNSDVD 127 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 P V+KP++ GS+LGI + + + + + ++ ++L+E Y+DG E+ Sbjct: 128 DIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAI--AQARDYDRRVLVEDYIDGREV 185 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VM + VP+S FY Y KY+ + +++PA +P YK +Q+ A ++ + Sbjct: 186 TVSVMNGRA-LSIIEIVPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYAS 244 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG +R DF+ ++LE+N PGMT S+ P+ AA G F +L+ +++DAS Sbjct: 245 LGCRGAARVDFMVT--DDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDAS 302 Query: 298 CLR 300 R Sbjct: 303 LDR 305 >gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 292 Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 137/298 (45%), Positives = 191/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G CA+AL +AG++V ++D + L L+ + PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK ++K + + +PV S+L R + H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ +++ S P DL +Q+++E + G ELT VMGD Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDLSDDMP----EQVMVEAFAPGRELTATVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y+ KY+ S HV+PA IP DI+ A AH+ +GCRG+S Sbjct: 177 KALTVTDIL--TDGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292 >gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025] Length = 307 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 147/302 (48%), Positives = 199/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D + VLA ++PD FN LHG Sbjct: 12 VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S++ + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +++ D + P L L++E Y+ G ELT Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRLAPDMP----RDLMVETYIPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y+ KY S HV+PA++P +I +A AH+A+GC Sbjct: 188 VMGDRALAVTDIV--TDGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + LE N QPGMTP S+ PE AA+ G SF E WMVEDASC Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305 Query: 299 LR 300 R Sbjct: 306 NR 307 >gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53] Length = 308 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 203/303 (66%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG ACA ALE GF+V++IDV R + VL L+PD A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+ + GVPV + ++R + Sbjct: 67 HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYVIKP+ GSS+G+ +I + P L W +GD+LL+E+YV G ELTC Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ DV VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTDVI-EIVPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AAYAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040] Length = 306 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+EREVSLS+G+ CA AL G++V ++D + L +KPD+AFN LHG Sbjct: 11 VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK + G+PV S++ + + + Sbjct: 71 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+I+PPYV+KP GSS+GI ++ + + P L + Q+++E Y G E+T Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEEMPA----QVMVEAYAPGREMTVT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y YE KY++ S HVLPA+IP +I A AHQ +GC Sbjct: 187 VMGDRALCVTDIL--TDGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE A + G +F +L W+VEDASC Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304 Query: 299 LR 300 R Sbjct: 305 ER 306 >gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1] Length = 309 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL +G D + L K D F +LHG Sbjct: 12 VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 +GEDG VQ LEL++IPYT SG++ASA++MDK R+K V + G+P+ Sbjct: 72 RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPSDWN 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ +K +P+ + + + ++ E ++ G E T Sbjct: 132 AVADHLDLPLFVKPSSEGSSVGVTKVKTVDELPIAY--AEAAKYDKVVIAESFMSGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L V P ++FY YE KY ++ ++ P + ++ E+Q LA LA Q I Sbjct: 190 ATILNGRALPVI-KIEPANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLALLAFQLI 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC+G R DF K + LEIN PGMT S+ P A AG SF +L++ ++E A Sbjct: 249 GCQGWGRVDF-LRGDDGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQILEGAGI 307 Query: 299 LR 300 + Sbjct: 308 GK 309 >gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1] Length = 307 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG ACA ALE G++V++++V + VL L+PD A N LHG Sbjct: 5 VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V +VNR Sbjct: 65 PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H ++PPYV+KP+ GSS+G+I+++ ++S P +L S W +G+++L E YV G ELTC Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI ++Y ++ KY+ S HVLPA + L+IY+ VQ LA AHQA+GC Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+D +D + + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304 Query: 298 CLR 300 R Sbjct: 305 LNR 307 >gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I] Length = 294 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG+ CA+AL GF+V ++D R + LA +KPD+ FN LHG +G Sbjct: 2 LMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V S G+PV S L + + + H+ Sbjct: 62 EDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGHV 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++PPYV+KP GSS+GI ++ + + P L ++ Q+++E Y G ELT V+G Sbjct: 122 MAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEAMP----QQVMVETYAPGRELTTTVIG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D +L VT+I +Y Y+ KY S HVLPA +P +I+ A AH+A+GCRG+ Sbjct: 178 DRALTVTDIL--TDGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRGV 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SR+DF +D + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC R Sbjct: 236 SRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294 >gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative [Brevundimonas sp. BAL3] Length = 313 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 148/304 (48%), Positives = 201/304 (66%), Gaps = 4/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVLMGG+S+EREVSL+SG+ CA ALE G +VS++D R + VL+ L KPD+ N LH Sbjct: 10 VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V L +R + Sbjct: 70 GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 S+H+I PPYV+KP GSS+G+ ++ + + P+ + W +G+Q+++E Y+ G EL Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189 Query: 180 GVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+G A P FY YE KY+ S HVLPA +P +++ R A AH Sbjct: 190 AVIGYADGPRALTVTDITPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAHV 249 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG+SRSDF +D + + LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVEDA Sbjct: 250 AMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVEDA 309 Query: 297 SCLR 300 SC R Sbjct: 310 SCPR 313 >gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5] Length = 308 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 153/303 (50%), Positives = 209/303 (68%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA+ALE G++V++IDV R + VL +LKPD+A +LHG Sbjct: 7 VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+L+S+L+M K +K V+++ GVPV + + R + Sbjct: 67 KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYVIKP+ GSS+G+ ++ +DQ+ P L W HG++LL+E+Y+ G ELTC Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + DV VP FY YE KYS S HVLPA + +Y+EV+RL AH A+GC Sbjct: 187 VIKGEASDVI-EIVPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF +D + + LE+N QPGMT S+ PE+A YAG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LDR 308 >gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 173/303 (57%), Gaps = 12/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSEREVSL +G A AL G+ V +ID+DR++ L D AF LHG Sbjct: 3 IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P I + + Sbjct: 63 KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIPTPNYIAFSFDENPN 122 Query: 121 Q--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P VIK + GS++GI + Q +P + + QLL+E+++ Sbjct: 123 FEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVLEI--DKQLLVEEFI 180 Query: 173 DGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +G+E+T + + V K+ FY YE KY+ S H++P +I ++ ++ Sbjct: 181 EGVEVTASVLGNSNPVVLPLIEIVSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAIEY 240 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A ++A+GCRG +R DF+ D + + LE+N PGMT S+FP+ A G SF +L+ Sbjct: 241 ARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDLVE 300 Query: 291 WMV 293 ++ Sbjct: 301 KIL 303 >gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 305 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 174/300 (58%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL +GKA + AL G++V+ ID R + L ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++ G+ ++ R Sbjct: 71 RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L P V+KP + GS++GI ++ +Q + ++ H D +L+EQ++ G E+T G Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQEL--AAGLEEAFRHDDLVLVEQFIAGAEVTVG 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ VPK FY Y+ KY+ + ++LPA +P +Y +Q A +AIGC Sbjct: 189 VLDGQP-LPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G +R DF+ + LE+N PGMT S+ P+ A G SF EL+ ++ AS + Sbjct: 248 CGAARVDFMVTDTG--FYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGASLRK 305 >gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 317 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 146/304 (48%), Positives = 202/304 (66%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ER+VSL+SG A AL + G++V++IDVDR++ L + PD+ FN LHG Sbjct: 15 VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++ GV V + LV R Sbjct: 75 KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G++++ P +S + +++E+YV G ELTC Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPS-SIASGGSPDQIVMVERYVPGRELTCA 193 Query: 181 VMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+GD DV EI FY YE KY + S H LPA++ D+Y+ V+ L AHQA+G Sbjct: 194 VIGDFVTDVIEIVPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQALG 253 Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG+SR+DF FD + ++ LE+N QPGMT S+ PE+A +AG+SF +L+ WMVEDA Sbjct: 254 CRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVEDA 313 Query: 297 SCLR 300 SC R Sbjct: 314 SCNR 317 >gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 321 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 187/300 (62%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL SG+ ALE+AG++V+ +D+DR + L KPD+ FN LHG Sbjct: 7 VVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +++L+ I YTHSG+ ASA+++DK +K++++ +P+ LV R ++ + Sbjct: 67 TPGEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYT 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ +I + + + Q W + LL E ++ G ELT Sbjct: 127 KDPLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 VMGD + P + FY Y+ KY+ +TH+ PAKIP +I ++ L+ AHQ + Sbjct: 187 VAVMGDKA-LAVTELCPNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLL 245 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D + +F LE+N QPGMTP+S+ PE A G + L +VE+A Sbjct: 246 GCRGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305 >gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 306 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 143/302 (47%), Positives = 194/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+ CA+AL GF+V ++D + L PD+ FN LHG Sbjct: 11 VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+ + G+PV S L +R +++ Sbjct: 71 RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L L++E+YV G EL+ Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVLAPDLPAT----LMVEEYVPGRELSTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L+VT+I +Y Y KYS S HV+PA +P +I++ A AH+A+GC Sbjct: 187 VLGDRALNVTDII--TDGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D +F LE N QPGMTP S+ PE A AG SF +L WMVEDASC Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304 Query: 299 LR 300 R Sbjct: 305 DR 306 >gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 313 Score = 212 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL SG+ A ALE G +V++ID+DR V L LA KPD+ FN LHG Sbjct: 8 VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +++++ + YTHSG++ S +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + + W DQLL E ++ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+GD + + PKS FY ++ KY+ + H+ PA+IP +I + + +A AH+ + Sbjct: 188 TAVIGDRA-LLVTELRPKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE A G + +L+ ++ +A Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306 >gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11] Length = 296 Score = 212 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 142/301 (47%), Positives = 197/301 (65%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLS+G+ CA+AL D G++V+++D + LA +PD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+ + G+PV S L + + + Sbjct: 62 WGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+GI ++++ + P L + D++++E Y G ELT V Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQLSEDMP----DEVMVETYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L VT+I +Y ++ KY S HVLPA +P +I++ A AH A+GCR Sbjct: 178 VDGKALTVTDIL--TDGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D K + LE N QPGMTP S+ PE AA+ G SF +L WMVEDASC Sbjct: 236 GVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASCG 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035] Length = 296 Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 140/301 (46%), Positives = 192/301 (63%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D + L +KPD+ FN LHG Sbjct: 2 AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K + G+PV S+L R + ++ Sbjct: 62 WGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRTR 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PPYV+KP GSS+GI +++ + P L + +++E Y G ELT V Sbjct: 122 HVMPPPYVVKPCNEGSSVGIYLVEAGANNPPALSDDMP----EVVMVEAYAPGRELTTTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD +L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH +GCR Sbjct: 178 MGDRALTVTDIL--TDGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + + LE N QPGMTP S+ PE A G +F EL WMVEDASC Sbjct: 236 GVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASCN 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1] gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029] Length = 307 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 148/302 (49%), Positives = 199/302 (65%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG Sbjct: 12 VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + + Sbjct: 72 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+G+ ++ +D + P L L++E YV G ELT Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QDLMVETYVPGRELTVT 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GC Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305 Query: 299 LR 300 R Sbjct: 306 SR 307 >gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 311 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLSSG+ CA AL AG++V ++D R + LA PD+ FN LHG Sbjct: 16 VVVLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L YTHSG+LASAL+MDK R+K+++ G+PV S++ + + + Sbjct: 76 RWGEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRA 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYV+KP GSS+G+ ++ + + P L ++++E Y G ELT Sbjct: 136 RHVMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSDKMPA----RVMVETYAPGRELTVA 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VTEI +Y Y+ KY+ S HV+PA IP +I + A AH+A+GC Sbjct: 192 VLGDRALGVTEIV--TEGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGC 249 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG++RSDF +D + LE+N QPGMTP S+ PE AA++G F L W+VE+A C Sbjct: 250 RGLTRSDFRWDESRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309 Query: 299 L 299 Sbjct: 310 R 310 >gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 292 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 147/298 (49%), Positives = 192/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++ LAH+KPD+ FN LHG +GE Sbjct: 1 MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE L IPYTHSG+LASAL+MDK R+K + G+PV PS+L R + +H++ Sbjct: 61 DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + P L D +++E Y G ELT V+GD Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQLSPEMP----DVVMVEAYAAGRELTTAVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KYS S H +PA IP+ IY A AH+A+GCRG+S Sbjct: 177 RALTVTDII--TDGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+AG SF EL W+VEDASC R Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292 >gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 319 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 24 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 84 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + ++++E + G ELT Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTT 199 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 200 VVGDRALTVTDIV--TDGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317 Query: 299 LR 300 R Sbjct: 318 DR 319 >gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 332 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID +G L PD N LHG Sbjct: 37 VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK + G+PV PS++ + Sbjct: 97 RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + ++++E + G ELT Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTT 212 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HV+PA IP DI+ A AH A+GC Sbjct: 213 VVGDRALTVTDIV--TDGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMT S+ PE AA G +F +L WMVEDASC Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330 Query: 299 LR 300 R Sbjct: 331 DR 332 >gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S] Length = 321 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 182/300 (60%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + + + W H ++LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306 >gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 304 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 195/302 (64%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLSSGK CA+AL AGF ++D ++ L + PD+AFN LHG Sbjct: 9 IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K S G+PV S+L + ++ Sbjct: 69 RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP+ GSS+G+ ++++ + P L + L++E Y G ELT Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRLAPEMP----EILMVETYAPGRELTTT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY + S HVLPA +P +I+ A AH +GC Sbjct: 185 VIGDRALTVTDIL--TDGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302 Query: 299 LR 300 R Sbjct: 303 NR 304 >gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 293 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 133/298 (44%), Positives = 181/298 (60%), Gaps = 7/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ C AL +AGF +ID + LA KPD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L +PYTHSG+LASAL+MDK R+K + G+PV S L R +++ H++ Sbjct: 61 DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P L +++++E + G ELT VMG+ Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKLGAEMP----ERVMVEAFAPGRELTTMVMGE 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + Y Y+ KY S H +PA IP +I + A AH+ IGCRG++ Sbjct: 177 RGALGVTDIITDGW-YDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGVT 235 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LEIN QPGMTP S+ PE AA+AG F EL W+VEDASC R Sbjct: 236 RTDFRWDESRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293 >gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1] Length = 316 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 125/300 (41%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G +V++ID+DR V L L+ +PD+ FN LHG Sbjct: 8 VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + + + W H D+LL E Y+ G ELT Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + PKS FY ++ KY+ + HV PA IP +I + + +A AHQ + Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SRSDF +D +F LE+N QPGMTP+S+ PE AA G + EL+ +VEDA Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306 >gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel] gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel] Length = 354 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S K + AL G+KV+ ID+ + L +KPD+ FN LHG Sbjct: 58 IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKP+ GSS+GI VI ++ + + +GDQ++IE+Y+ G EL Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA---NYDFPYGDQVIIEKYIKGRELQVA 234 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA IP ++Y ++ + ++ + C Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +FL + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351 >gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM 30120] Length = 306 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 164/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR + Sbjct: 65 RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + +P + ++ D LLIE++ Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L P FY YE KY S + + P+ + D+ ++ +A Sbjct: 183 LSGPEYTVAVLGDEVLPSI-RIQPPGIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADMA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 MKAYQAVGCRGWGRVDVMQD-SDGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300 Query: 292 MVEDAS 297 ++E AS Sbjct: 301 ILELAS 306 >gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis ITI-1157] Length = 296 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 143/301 (47%), Positives = 194/301 (64%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG S+EREVSLSSG+ CA+AL G +V ++D + L +KPD+ FN LHG Sbjct: 2 AVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V + G+PV S++V + + + Sbjct: 62 WGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMAG 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H++ PYV+KP GSS+GI ++ + + P L +Q+++EQYV G ELT V Sbjct: 122 HVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQLSDDMP----EQVMVEQYVAGRELTVTV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MGD + +T + +Y Y+ KY S HVLPA IP I+ A AHQ +GCR Sbjct: 178 MGDRA--LTVTEILTDGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGCR 235 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+D+ +D + +F LE N QPGMTP S+ PE AA+ G +F +L WMVEDASC Sbjct: 236 GVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASCD 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5] Length = 301 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 6/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L P D FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V ++ G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ ++ HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADIARAW--RHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + + FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSV--LEDRALAVTEIRAEGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 Query: 299 L 299 Sbjct: 300 R 300 >gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4] Length = 308 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A AL++ G++ +IDV + L L+ +KPD+ F LHG Sbjct: 3 VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE++ +PYT GILASAL+M+K+ +K+ + S +P I +++ Sbjct: 63 KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + L P V+K GSSLG+ ++++++ + L + ++ + +L+E++++G Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180 Query: 175 IELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +E+T + V Y YE KY+ S H++P ++P ++V+ LA Sbjct: 181 VEVTAAVLGNRKPVVLPLIEIVADKGVYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELAL 240 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 ++ + CRG SR DF+ D + LE+N PG+T VS+FP+ A AG SF EL+ + Sbjct: 241 ATYRWLDCRGFSRIDFMVD-HKGNPYILEVNTIPGLTEVSLFPDAARAAGISFGELVERL 299 Query: 293 VEDA 296 + A Sbjct: 300 IYLA 303 >gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62] Length = 306 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S+EREVSLSSG CA+ L + G++V ++D + + LA +PD+ FN LHG Sbjct: 11 IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV G+PV S LV++ Sbjct: 71 RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYVIKP GSS+G+ +++ + P L D++++E + G ELT Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDEMP----DEVMVEAFAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA IP +I+ A AH A+GC Sbjct: 187 VLGDRALTVTDII--TDGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG +R+DF +D + LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304 Query: 299 LR 300 R Sbjct: 305 NR 306 >gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2] Length = 321 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI ++ ++ +G Q++IEQY+ G EL Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYNFPYGYQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301] Length = 301 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 6/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 +AVL+GGIS EREVSL+SG+ A+AL AG+ V +I+V +G V+A L P D FN L Sbjct: 4 VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK +K V +S G+P+ +V + Sbjct: 64 HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYVIKP+ GSS+G+ ++++ + D+ ++ HG + E+YV G ELT Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADIARAW--RHGSVAMTEEYVPGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + + FY Y KY++ S H +PA +P + + +A AH+A+ Sbjct: 182 VSV--LEDRALAVTEIRAEGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GCRG +RSDF +D + ++ LE+N QPGMTP S+ PE AA+ G F L WMVE+A+C Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299 Query: 299 L 299 Sbjct: 300 R 300 >gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400] Length = 316 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 182/300 (60%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A +AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P + Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRRGEAVD 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ ++K + +P L +++ + D +L+E+++ G E+ Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ VP ++FY +E KY++ + H+ P +P ++Y+ + AH+A+ Sbjct: 189 IGILDDRAMGAI-EIVPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGETAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297 GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ ++ A+ Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISAA 306 >gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18] Length = 308 Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 153/303 (50%), Positives = 207/303 (68%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SGKACA ALE G++V+++DV R++G VL LKPD+A +LHG Sbjct: 7 VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPY+HSG+LASAL+M K +K V+++ GVPV + ++R + Sbjct: 67 RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYVIKP+ GSS+G+ ++ + P L W HG+QLL+E+YV G ELTC Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ V V + FY YE KYS S H+LPA + +Y+EV+RL AH A+GC Sbjct: 187 VVKGEPTGVI-EIVQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245 Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SR+DF FD + + LE+N QPGMT S+ PE+AA AG +F EL+ WMVEDAS Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305 Query: 298 CLR 300 R Sbjct: 306 LGR 308 >gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48] gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48] Length = 318 Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 160/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P ++ Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEQDCV 139 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ + +Q + + + Q+L+EQ++ G E T Sbjct: 140 AASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAA--WKDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 330 Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSLS+G+ CA+AL A V ++D + L + PD FN LHG Sbjct: 35 VVVLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHG 94 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSGILASAL++DK R+K + + G+PV SIL + + + Sbjct: 95 RWGEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRA 154 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYV+KP GSS+GI +++ + P L ++++E Y G ELT Sbjct: 155 RHVMPPPYVVKPYNEGSSVGIYIVQDAANGPPQLSADMPA----RVMVETYAPGRELTTT 210 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD +L VT+I +Y Y KY+ S HV+PA+IP I+ A AH+A+GC Sbjct: 211 VMGDRALTVTDII--TDGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGC 268 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +D + LE N QPGMTP S+ PE AA G SF +L W+VEDASC Sbjct: 269 RGISRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASC 328 Query: 299 LR 300 R Sbjct: 329 DR 330 >gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] Length = 316 Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 181/299 (60%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL+SG A AL+ G+ +DV R + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P +V R Sbjct: 71 RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ ++K + +P L ++ + D +L+E+++ G E+ Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ VP ++FY +E KY++ + H+ P +P ++++ + AH+A+ Sbjct: 189 IGILDDRAMGAI-EIVPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDA 296 GC G SR DFL + + LE+N PGMT +S+ PE+A +G F +L+ ++ A Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISA 305 >gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C] Length = 321 Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R +F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 318 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 160/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEEDCV 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + ++ + + + Q+L+EQ++ G E T Sbjct: 140 VAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1] Length = 316 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 188/310 (60%), Gaps = 14/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAF 55 + VLMGG S+EREVSLS+G+ CA AL GF V ++D + L ++PD+ F Sbjct: 11 VVVLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVF 70 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K + + G+PV SI+ + Sbjct: 71 NALHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPK 130 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + H+++ PYV+KP GSS+G+ ++ + + P L D++++E Y G Sbjct: 131 EAVVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHLSDDMP----DEVMVETYAPGR 186 Query: 176 ELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+GDA D + V +Y Y+ KY S HV+PA+IP +I+ +A Sbjct: 187 ELTVSVLGDAPGDPGALTVTDILTDGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246 Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 AH +GC+G+SR+D+ +D + LE+N QPGMTP S+ PE G SF +L Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306 Query: 291 WMVEDASCLR 300 W+VEDA+C R Sbjct: 307 WLVEDATCDR 316 >gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1] Length = 325 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 138/296 (46%), Positives = 200/296 (67%), Gaps = 1/296 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+SSEREVSL SG+ CA ALE G KVS+ID R + VL+ LKPD+ FN LHG Sbjct: 10 VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV L NR+ + Sbjct: 70 AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H+++PPYV+K GSS+G+ +++ + P + SW +G+Q+++E ++ G+EL G Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VM + + + +FY YE KY+ S H++PA++P ++ + + AH A+GC Sbjct: 190 VMDGKA-MEVTEILTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG++RSD +D ++ + LE+N QPGMTP S+ PE AA G F L+LW+ EDA Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDA 304 >gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51] Length = 318 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + + + + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAA--WQDAAQYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A A+ Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503] Length = 311 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 189/306 (61%), Gaps = 7/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFN 56 + VL GG SERE+SL SG A AL D G+ V +IDV R + VL L PD FN Sbjct: 7 IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++ G+ V + Sbjct: 67 ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ +H ++ PYV+KP+ GSS G+ ++ +Q + + G + L+E ++ G E Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT V+G +L VPK+ FY +E KY+ STHVLPA IP ++ V+ + A Q Sbjct: 187 LTVSVLGAVAL-GVTEIVPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245 Query: 237 AIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GCRG+SR DF +D S +F LE+N QPGMTP S+ PE AA AG F L+ WM+E Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305 Query: 295 DASCLR 300 DASCLR Sbjct: 306 DASCLR 311 >gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45] Length = 306 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 140/302 (46%), Positives = 192/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSLSSG+ CA+AL GF+V+++D + L L PD+ FN LHG Sbjct: 11 VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV G+PV S+L ++ +++ Sbjct: 71 RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H+++PPYV+KP GSS+G+ ++ + P L + L++E Y G ELT Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRLSPEMP----ETLMVETYAPGRELTTT 186 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L VT+I +Y Y+ KY S HVLPA +P +++ A AH+A+GC Sbjct: 187 VVGDRALTVTDIL--TDGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE G SF L WMVEDA+C Sbjct: 245 RGVSRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDATC 304 Query: 299 LR 300 R Sbjct: 305 NR 306 >gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193] Length = 296 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 136/301 (45%), Positives = 193/301 (64%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL+GG S+EREVSLSSG+ CA+AL G++V ++D + + L +KPD+ FN LHG Sbjct: 2 AVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V G+P+ S L ++ + + Sbjct: 62 WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMAD 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+GI ++ + + P L ++L+E + G EL+ V Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQLSPEMP----QEVLVEAFAPGRELSVSV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +GD +L VT+I +Y Y+ KY S HV+PA+IP++I A AH+A+GCR Sbjct: 178 LGDRALAVTDIL--TDGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+D +D + LE N QPGMTP S+ PE AA+ G SF L W+VE+ASC Sbjct: 236 GLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASCG 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 301 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 119/298 (39%), Positives = 178/298 (59%), Gaps = 5/298 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S ER++S+ +G+ACA+AL+DAG+ IDVDR++ L + PD+ FN LHG + Sbjct: 6 VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K + G+ + L++ Sbjct: 66 GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYA-TYKSM 124 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I PYV+KP+ GSS+ + + L +W + ++E+Y+ G ELT V Sbjct: 125 EIPFPYVLKPVNDGSSIATYIFNTP---DAEKLSEQAWIYNTHAMMERYIKGRELTVTVF 181 Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + VTEI FY++ KY + S H LPA IP + A H +GCR Sbjct: 182 MNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGCR 241 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 GISRSDF+ + + +F+LEIN QPGMTP S+ PE A+AG SF +L+ +V++A+ Sbjct: 242 GISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEATID 299 >gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15] gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000] Length = 324 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 145/299 (48%), Positives = 200/299 (66%), Gaps = 3/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG ACA ALE G KVS+ID V VLA KPD+ FN LHG Sbjct: 16 IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 76 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ +IK+ + P + + + SW G+++++E Y+ G+EL Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195 Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+++ + FY YE KYS S HVLPA IP + R+A LAH A Sbjct: 196 VLGESNGPRALAVTDIRASTGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHTA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG++RSDF +D ++ + LE+N QPGMTP S+ PE A + G F +L+LW+VEDA Sbjct: 256 LGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314 >gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford] Length = 320 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL G+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 24 IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S + + SI+V++ + Sbjct: 84 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI ++ + +GDQ++IE+Y+ G E Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYDFPYGDQVVIERYIKGREFQVA 200 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA + ++Y+++ + ++ + C Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317 >gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 303 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 149/297 (50%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG SAL G D L D FN+LHG Sbjct: 7 VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 FGEDG +Q LE L +PYT G++ASA++MDK R+K + G+P+ N Sbjct: 67 PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ +K+ + ++ + D+++I + G Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAFEEARKY---DKVVIAEQFIGGGEY 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + T P +++Y Y+ KY ++ + P+ + ++ + LA A + + Sbjct: 184 TCAVIGETAYPTIKIEPATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKVL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG SR DFL D +++ LE N PGMT S+ P A G ++ +L L +++ Sbjct: 244 GCRGWSRVDFLMDEA-GEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCLKVLDT 299 >gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW] Length = 315 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 140/304 (46%), Positives = 205/304 (67%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58 +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R + +L L KPD+ FN L Sbjct: 14 VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDGL+Q +LE L +PYTHSG+LASAL+M+K +++V+++ GVPV + V R + Sbjct: 74 HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + H I PPYV+KP+ GSS+G+ +++ Q+ +L+ W +G+++L+E+++ G ELT Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GVMGD + VP+S F+ Y KY+ + HV PA+IP D+ +E RLA LAH+ + Sbjct: 192 VGVMGDRA-LAVTEIVPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250 Query: 239 GCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GC G+SRSDF +D + +++LE N QPG T +S+ PE AA G F EL W+VE Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310 Query: 296 ASCL 299 A C Sbjct: 311 ARCH 314 >gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM 11347] Length = 304 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 184/303 (60%), Gaps = 8/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+A +AL++ G+ V ID + + K D+AF VLHG Sbjct: 3 VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116 +GE+G VQ +LE++ IPYT SG+LASAL+MDK SK++ G+PV P Sbjct: 63 GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + S S P V+KP + GSS+G+ ++K ++ + + ++ G +++IE++++G E Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + GV+GD +L PK FYSYE KY+ + ++LP +I +Y++++ L AH+ Sbjct: 181 IHIGVLGDKALGGV-EVRPKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ C+G +R D + D + LE+N PGMT S+ P++A+ AGY F+ L+ ++E + Sbjct: 240 SLNCKGGTRVDMIVDQQGN-PYVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILELS 298 Query: 297 SCL 299 Sbjct: 299 LKN 301 >gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4] Length = 310 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ + + V P + R + Sbjct: 71 RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+KP + GSS+G+ ++KK+ + ++ + ++L+EQ++ G E+ Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAM--KEAFRYDREILVEQFIKGSEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L VPK++FY ++ KYS + H+LPA++P ++Y++V R AH+A+ Sbjct: 189 VGILEDKALGAI-EIVPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G SR DFL + LE+N PGMT +S+ PE+A +G F +L+ ++ A+ Sbjct: 248 GCSGYSRVDFLVTEE-GACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLVERILAAAA 305 >gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440] gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440] Length = 318 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + + + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 297 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 185/301 (61%), Gaps = 9/301 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL G++V ++D DR + LA L PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + IPYTHSG+LASAL+MDK R+K V G+P S L R + S+H++ Sbjct: 61 DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ ++ + + P + ++ + L++E++V G ELT VMG Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176 Query: 185 ASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 D + V +Y YE KY+ S HV PAKIP DI A AH A+GCR Sbjct: 177 GEGDPGPLCVTEILTDGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALGCR 236 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE A G F L W+VEDASC Sbjct: 237 GVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDASCN 296 Query: 300 R 300 R Sbjct: 297 R 297 >gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 321 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 159/295 (53%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLASEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + + ++ Q+L+EQ++ G E T Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAA--WKDASSYDSQVLVEQWITGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + Y Y+ KY + ++ + +P + KE+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R+D + D + ++LE+N PGMT S+ P A AG F++L++ ++ Sbjct: 257 GIAGWGRADVMQDA-DGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVVSIL 310 >gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1] Length = 303 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 163/298 (54%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 +A+L GG SSERE+S+ SGKA +AL+ GF+ S D + + PDLAF L Sbjct: 6 IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +LE L I YT S + SA+ MDK +K ++ + G+ V + Sbjct: 66 HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V+KP GSS+G+ +++ + + + + +++IE+++ G E+T Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKI--DSKVIIERFIKGREIT 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ K FY Y KY S + ++ PA+I +Y+++Q A + + Sbjct: 184 VGILNG-EPLDIIEIKVKEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIYNIL 242 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G++R DF+ D K ++LE+N PG+T S+ P+ AA G +F L+L ++E A Sbjct: 243 GCKGVARVDFILDK--DKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGA 298 >gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96] Length = 310 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 104/300 (34%), Positives = 156/300 (52%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG ++EREVSL SG A AL+ G IDV S LA K D FN++HG Sbjct: 15 VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118 GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K G+ P ++ Sbjct: 75 RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGLVTPKWCLLIDESDLD 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + L ++ + + E +V G E T Sbjct: 135 GCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRCD--VYAEAWVTGKEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L V + P + Y YE KY + + + P + D ++ LA A + + Sbjct: 193 VAVLDGEALPVIRLETPNTF-YDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKVV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R D D L + +E+N PGMT S+ P A AG F EL+ ++E SC Sbjct: 252 GVKGWGRVDVFIDDL-GQYQLIEVNTVPGMTDHSLVPMAARQAGMDFEELVWRILET-SC 309 >gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9] Length = 312 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 161/301 (53%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+ +AL+ G+ + D+ +L DLAF LHG Sbjct: 7 IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIA--NRDLLELKNFDLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG +Q LELL+IPYT G+++S++ M+K+ SK++ G+P + Sbjct: 65 KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P ++KP + GS++G+ + + +S +++L+E+ ++G ELT Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESI--KFDEEMLVEKCIEGRELT 182 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++G + V Y YE KY+ ++ ++ PAK+ ++ + ++ + A+ Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGNYDYEQKYTRDDTQYICPAKLDENLARNIENICIKAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++ C+G SR D + D + + LEIN PGMT S+ P A G S+ ++ +++ Sbjct: 243 DSLECQGWSRVDVMLD-KNNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEILKT 301 Query: 296 A 296 A Sbjct: 302 A 302 >gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1] Length = 318 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + + + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGKA AL+ G D + L + D F LHG Sbjct: 13 VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++ + G+P + + + Sbjct: 73 RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPTPRYVELKADSDSG 132 Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GS+LG+ +K+ + + + + +L E+++ G+ELT Sbjct: 133 KVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAY--ALASKYDRSVLAEEFIKGMELT 190 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++ T + Y Y KY + + ++ P + + +++++ A ++ Sbjct: 191 CAILELDGKPQTLPLIRIIAPDANYDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALKSY 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GCRG R D + + F LE+N PGMT S+ P A AG S+ +L L +++ Sbjct: 251 QALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLLQS 310 Query: 296 ASCL 299 A+ Sbjct: 311 ATLD 314 >gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131] Length = 294 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 146/299 (48%), Positives = 196/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG +G Sbjct: 2 LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++H+ Sbjct: 62 EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHI 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + PPYV+KP GSS+G+ ++ +D + P L L++E YV G ELT VMG Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QNLMVETYVPGRELTVTVMG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRGI Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC R Sbjct: 236 SRSDLRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294 >gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389] Length = 321 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL +AG+KV+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+LAS+L+ DK+ S+ + + + SI++++ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I PYVIKP GSS+G+ VI ++ + + +GD+++IE+Y+ G EL Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI + K+ FY YE KY+ + H+ PA +P DIY ++ + + + + C Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAY G F L+ +++ AS Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318 >gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58] Length = 321 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSLSSG+ A ALE G KV++ID+DR+V LA K D+ FN LHG Sbjct: 8 VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ S +++DK +KQ + G+P+ +V ++ + Sbjct: 68 VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + W +LL E Y+ G ELT Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + PKS FY ++ KY+ + HV PA IP DI + + +A AHQ + Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D ++ LE+N QPGMTP+S+ PE AA G + L+ +VE+A Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306 >gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N] Length = 294 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 LMGG S+EREVSLSSG +C++AL DAG++V+++D + VLA L PD FN LHG +G Sbjct: 2 LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV S+L + ++HL Sbjct: 62 EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHL 121 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + PPYV+KP GSS+G+ ++ +D + P L L++E YV G ELT VMG Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QDLMVETYVPGRELTVTVMG 177 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D L VT+I +Y Y+ KY S H++PA +P +I + +A AH+A+GCRGI Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SRSD +D + LE N QPGMTP S+ PE AA+ GYSF E W+VEDASC R Sbjct: 236 SRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294 >gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 299 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA AL G+ D+ + KPDLAF VL Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEILEYKPDLAFIVL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +QAILE L IPYT S + S ++MDK+ +K + + +P I Sbjct: 64 HGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIFFTEEKE 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+K GSS+G+ ++ Q + + + D++LIE+++ G ELT Sbjct: 124 ALNYRPDFPAVVKAPTEGSSIGVYIVNNQQEYENAVKEVFNL--DDKVLIEKFIKGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D D+ E+ V + Y + KY + + ++ PA++ D+YK VQ L ++ + Sbjct: 182 VSILDDEVFDIVEVVVSEGF-YDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKVYKLL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G +R D + + + LE+N PGMT S+ P+ A+ G +F +L+ +++++ Sbjct: 241 NCKGPARVDIIL-ENDKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIKNS 297 >gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 318 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + + + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GQFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5] Length = 321 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G+ V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 319 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1] Length = 291 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 100/294 (34%), Positives = 163/294 (55%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL +G+A AL++ G+ IDVD +V + +PD F LHG Sbjct: 5 IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPY +G+ ASA++ DK +K +V S G+ L Sbjct: 65 KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKTPDYYLCEND---- 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P V+KP + GS++GI ++K S + + ++LIE++++G ELT G Sbjct: 121 KDIRFLPAVVKPAREGSTIGISIVKSKDEFSKAF--SEAKKYDSRVLIERFIEGKELTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + L P FY YE KY+ + ++ + +D ++ ++ IGC Sbjct: 179 IINNEVLPTIY-IKPIKGFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + R D+++D + F LE+N PGMT S+ P+ A AGY F +L+ +++ Sbjct: 238 SSLCRIDYIYDGK--EFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289 >gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1] Length = 318 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL AG V IDV + L + D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + Q + + + Q+L+EQ++ G E T Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P Y Y+ KY + ++ + +P + +E+ L A AI Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D + D + + LE+N PGMT S+ P A AG F++L+L ++ ++ Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315 Query: 299 LR 300 R Sbjct: 316 TR 317 >gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVS+ SG AL G D L + D F LHG Sbjct: 13 VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEQFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LE + +PYT G+++S+++MDK+ +K++ S G+P + ++ Sbjct: 73 RYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTPRFLTLDAQATTR 132 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + L + P ++K GS++GI + + + +L E+++ G Sbjct: 133 EQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGF--DLCARYDKVVLAEEFIRG 190 Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT A Y Y+ KY + ++ ++ PA + ++ + +Q LA Sbjct: 191 RELTVPVLGTGSAARALPVIEIRAPEGNYDYQNKYFTDDTKYLCPAPLDEELTRHLQNLA 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+GCRG SR DF+ + + + LEIN PGMT S+ P A G S+ +L Sbjct: 251 VQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMSYEDLC 310 Query: 290 LWMVEDASCL 299 +++ A+ Sbjct: 311 CEILQMAALD 320 >gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25] gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25] Length = 318 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 159/301 (52%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDA--WKAASTYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHTF-YDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D ++LE+N PGMT S+ P A AG F++L+L ++ AS Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL-AASI 314 Query: 299 L 299 Sbjct: 315 E 315 >gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1] Length = 332 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 120/303 (39%), Positives = 176/303 (58%), Gaps = 7/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++EREVSL SG + ALE G +V+QID+DR V + KPD+ FN LHG Sbjct: 18 VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + GVP +V + Sbjct: 78 VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ +D ++ + + W DQLL E ++ G ELT Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197 Query: 179 ---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + FY YE KY+ + HV PA IP +I + A AH Sbjct: 198 TAVIDGADGPRALGVTELIIEHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRAH 257 Query: 236 QAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GC G SR+DF +D + + +F LE N QPGMTP+S+ PE A +AG S+ EL+ +V Sbjct: 258 KVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELIV 317 Query: 294 EDA 296 +A Sbjct: 318 REA 320 >gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594] gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594] Length = 323 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 122/300 (40%), Positives = 181/300 (60%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG ++EREVSL SG+ A ALE G V++ID+DR V +A PD+ FN LHG Sbjct: 9 VVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 69 VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQ 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELT 178 Q ++ PYV+KP+ GSS+G+ ++ + + + + W +LL E ++ G ELT Sbjct: 129 QDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G + PKS FY ++ KY+ + HV PA IP +I ++ A AH+ + Sbjct: 189 TAVVGGQA-LAVTELKPKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRIL 247 Query: 239 GCRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SR+D+ +D +F LE N QPGMTP+S+ PE AAYAG S+ +L+ +VE A Sbjct: 248 GCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307 >gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36] Length = 292 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ACA+AL D F+V ++D + L +PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V + G+PV S++V+ T+ H++ Sbjct: 61 DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+G+ + I + ++++E+++ G ELT VMG+ Sbjct: 121 DPPYVVKPNNEGSSVGVYL----VEIENNGPPQLDDAMPAEVMVEKFIPGRELTTTVMGE 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+ + + +Y Y+ KY + STHV+PA IP +I++ A AH A+GCRG+S Sbjct: 177 RALTVTD--IHTTGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D +F LE N QPGMTP S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292 >gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002] Length = 303 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 146/298 (48%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S+EREVSL SG AL+ G D L + F LHG Sbjct: 7 VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LE + +PYT G++ASA+ MDK R+K + G+P+ +L+ + + Sbjct: 67 PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G+ +K + ++ + D+L+I + G Sbjct: 127 AVEAQLGLPLFVKPATEGSSIGVTKVKHPGELRAAYEEARRY---DKLVIAEAFVGGGEY 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + T P ++FY Y+ KY ++ + P+ + ++ + LA A + + Sbjct: 184 TCAIIGDKALPTIKIEPATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAFKVL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D ++ LE+N PGMT S+ P A G S+ EL L +++ A Sbjct: 244 GGRGWGRVDFLMDEAGG-IYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDMA 300 >gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 319 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 319 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5] Length = 321 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+++GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington] gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str. Wilmington] Length = 321 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 117/297 (39%), Positives = 188/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ ID+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFH---FIDYDFPYGEDIIIEQYIQGQELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI + K+ FY YE KY+ + HV PA++P ++YK++ + ++ I C Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTINC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG SF L+ +++ AS Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318 >gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7] Length = 321 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + I+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 308 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V+ +DVD + L L+ D+AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE + IPYT SG+ ASA+ MDK SK + + G+ V Sbjct: 69 RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDVIEYRAFPPARAAE 128 Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 L P V+KP GSS+G+ ++K + +++ + +++E+YV G E Sbjct: 129 IDLRDLPFGVPCVVKPAGEGSSVGVQIVKDAARLADACREAARYKGD--VVVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L P ++FY Y KY++ + + PA+IP V A AH+ Sbjct: 187 VNVAVLEGKALGAI-EIAPANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G++R DF+ P F LE+N PGMT S+ P++AA G +F EL +++ A Sbjct: 246 GLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101] Length = 292 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 140/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLSSG+ACA+AL D F V ++D + L + PD+ N LHG +GE Sbjct: 1 MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ ILE + IPY+HSG+LASAL+MDK RSK V + G+PV SI+ + + H++ Sbjct: 61 DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L + D +++EQ+ G ELT VMG Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDDNMP----DYVMVEQFAAGRELTTTVMGQ 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I + +Y Y+ KY STH++PA IP DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDIL--TTGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A G SF +L WMVEDASC R Sbjct: 235 RTDFRWDESRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292 >gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 306 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA +AL G ID L L L D F LHG Sbjct: 8 VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q L L+IPYT S +L+SA++MDK ++KQ+ S +P ++ + D Sbjct: 68 RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S ++KP+ GSSLG+ + + + L + ++ +L+E ++ G Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKAL--TEAFKFDQTVLLETWITG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L + FY Y+ KY S ++ + P + + E+ +LA A Sbjct: 186 QEYTVSILNGKALPAI-RMHTNNTFYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AIGCRG R DF+ D S + + LE+N PGMT S+ P+ A AGY F +L + +++ Sbjct: 245 FAAIGCRGWGRVDFMLD-KSGQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTIEILK 303 Query: 295 D 295 Sbjct: 304 Q 304 >gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7] Length = 315 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+ AL G D R + L + D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q LEL+ +PYT SG LAS+L+MDK+ +KQV G+P ++ T Sbjct: 68 RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPTPRYAILRPDTDLA 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ P +IKP GS+LG+ + S+ + + +L EQ++ G ELT Sbjct: 128 SVAAVLDLPLIIKPPHEGSTLGVTKVDGLDSLREAY--QLAARYDADVLAEQFIVGRELT 185 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G A V Y YE KY S ++ ++ PAK+ + ++++A A+ Sbjct: 186 VALLGGGGSARALPVIEIVAPDGNYDYEHKYISNDTQYICPAKLDDALSASIRQIAEQAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GC G R+DF+ D K + LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 246 VALGCEGWGRADFMLDEA-GKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCLEILST 304 Query: 296 ASCL 299 ASC Sbjct: 305 ASCK 308 >gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 322 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 158/295 (53%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG IDV L K D AF +LHG Sbjct: 20 VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDA--WKAASTYDSQVLVEQWIQGPEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRGQVLPPIALGTPHTF-YDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G +R+D + D ++LE+N PGMT S+ P A AG F++L+L ++ Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL 310 >gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255] Length = 304 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SG ASAL G+ VS ID D ++ + PD+ FN LHG Sbjct: 9 VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V + G+PV S+LV++ + + Sbjct: 69 RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PYV+KP GSS+G+ ++ + + D L++E+++ G ELT Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDKPISTIKEELP----DTLMVEEFIPGYELTVT 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L VT I +Y ++ KY + S H +PA +P +I+ A AH+ + C Sbjct: 185 VLDGNALTVTNII--TDGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242 Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RG+SR+DF +D + LE N QPGMTP S+ PE AAY G SF +++ WMVEDASC Sbjct: 243 RGLSRTDFRWDENLGLSGLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDASC 302 Query: 299 LR 300 R Sbjct: 303 NR 304 >gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 306 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + D AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + +PV P + + R + Sbjct: 65 RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + K + L + ++ H +++LIE++ Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKVDKAVDLADAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + + E+Q L Sbjct: 183 LSGPEFTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246] Length = 321 Score = 202 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318 >gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E] gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii] gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22] Length = 321 Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + AL + G+KV+ +D+ + + L + PD+ FN LHG Sbjct: 25 IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ + V + + SI+V++ + Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + +G+ ++IEQY+ G EL Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFN---FTDYDFPYGEDIIIEQYIQGQELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI + K+ FY YE KY+ + HV PA +P ++YK++ + ++ I C Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G R++F+ + + K++ LEIN PGMTP+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318 >gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 319 Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ I + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 319 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKTASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVP 316 Query: 299 LR 300 +R Sbjct: 317 VR 318 >gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 319 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+P + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + + ++ LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 312 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 + V+MGG S EREVSL++G A AL++ G+ ID+D S+ + + FN +H Sbjct: 7 IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFNAVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +QA+LE+L +PYT SG+L+SA++M+K +K++ + GV + + Sbjct: 67 GLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQ 126 Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P V+KP + GSS+G+ ++KK++ + L ++ ++G +L E + G Sbjct: 127 TAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKALEEAF--SYGKLVLAEAFFTG 184 Query: 175 IELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+ GVM D+S + + P DFY Y KY+ +T+ PA + K +Q Sbjct: 185 KEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQEE 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++A+GC G++R D + D LE+N PGMT S+ P+ A G SF +L Sbjct: 245 AVKAYKALGCSGVARVDEMVDAEGN-FICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCE 303 Query: 291 WMVEDA 296 ++E A Sbjct: 304 KILETA 309 >gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 319 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S P+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGPATPLHAVLENENDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +++++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG +F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp] Length = 313 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV LA K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCE 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ ++ +++ + + Q+L+EQ++ G E T Sbjct: 135 AAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAA--WQDAARYDSQVLVEQWIAGPEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P S Y Y+ KY + ++ + +P + + E++ L A +A+ Sbjct: 193 VAVLRGEVLPPIGLGTPHSF-YDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R+D + D S + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 252 GTQGWARADVMQDA-SGQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310 Query: 299 LR 300 R Sbjct: 311 AR 312 >gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1062] Length = 304 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 170/304 (55%), Gaps = 12/304 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG F Sbjct: 7 ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119 GEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N Sbjct: 67 GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNI 126 Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V+KP+ GSS+ + + K + +++LIE+++ G E Sbjct: 127 IKLIEKNLKFPVVVKPINEGSSVHVYICDKTNILKN----LKVLKSYNEILIEEFIPGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +M + SL E+ + + SS + H++P + + ++ +A AH+ Sbjct: 183 IQVAIMNNKSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAHK 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++DA Sbjct: 243 IIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300 Query: 297 SCLR 300 S R Sbjct: 301 SINR 304 >gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique HTCC1002] Length = 304 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 172/304 (56%), Gaps = 12/304 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +GK A L G+KV + D+++ + KPD+ FN LHG F Sbjct: 7 ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119 GEDG +QAILE +IPYTHSG++AS+++MDK SK++ + I N Sbjct: 67 GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKLNI 126 Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + ++ P V+KP+ GSS+ + + K + + +++LIE+++ G E Sbjct: 127 IKLIEKILKFPVVVKPINEGSSVHVYICDK----TNIIKNLKALKSYNEILIEEFIPGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +M + SL E+ + + SS + H++P + + ++ +A AH+ Sbjct: 183 IQVAIMNNKSLGAIELEPKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARAAHK 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC+G++RSDF F + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++DA Sbjct: 243 IIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300 Query: 297 SCLR 300 S R Sbjct: 301 SINR 304 >gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] Length = 322 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+EREVSL SG +AL G D LA + D F LHG Sbjct: 11 VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLAELATEQFDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LELL IPYT SG++ASA+ +DK+ +K++ S +P ++++ T Sbjct: 71 RFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPTPRFLVLDAQTPAD 130 Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++K GS++G + K + + + +L E+++ G Sbjct: 131 VLDEVPEELGLPLMLKAPHEGSTIG--IAKVIVDADMHTGFALCAQYDSVVLAEEFISGR 188 Query: 176 ELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 E+T A Y YE KY S ++ ++ PA + ++ +Q +A Sbjct: 189 EITIPVLGSGHGARALPIVEIRAPEGNYDYEHKYFSDDTVYLCPAPLADEVTATLQDIAV 248 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A A+GC G R D + F LE+N PGMT S+ P A AG S+ +L + + Sbjct: 249 RAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISYEDLCVEI 308 Query: 293 VEDA 296 + A Sbjct: 309 LSTA 312 >gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 313 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 119/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE G KV++ID+ R + LA PD+ FN LHG Sbjct: 8 VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +++L+ + YTHSG+ AS +++DK +KQ + G+P+ +V + Sbjct: 68 TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ + + + + + W D LL E Y+ G ELT Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V S + PKS FY ++ KY+ + H+ PA IP +I + + +A AH+ + Sbjct: 188 TAV-LGDSALLVTELRPKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D +F LE+N QPGMTP+S+ PE A G + L+ +V +A Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306 >gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17] Length = 314 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 118/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG A ALE AG +V++ID+ R V L +PDL FN LHG Sbjct: 7 IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +L+L+ I YTHSG+ S +++DK+ +KQ + G+P+ +V + + Sbjct: 67 SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + W ++LL E Y+ G ELT Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V PK+ +Y ++ KY+ + HV PA+IP +I + + LA AH+ + Sbjct: 187 TAV-LGNRALGVTELKPKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG SRSDF +D +F LE+N QPGMTP+S+ PE + G + L+ +V++A Sbjct: 246 GCRGASRSDFRWDDERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDEA 305 >gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8] Length = 316 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 151/304 (49%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 +GEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P + Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLDADTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + +++ ++L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKE--AYAAAARFDAEVLAEQFITGRELT 185 Query: 179 CGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V A Y YE KY S ++ + PA +P ++ EV +A A+ Sbjct: 186 VAVLGGGKTARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPATLPPEVAAEVAEIAVQAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ + Sbjct: 246 QALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVAILSE 304 Query: 296 ASCL 299 A+C Sbjct: 305 AACK 308 >gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1] Length = 324 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 164/301 (54%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG A +AL+ AG IDV + L K D AF +LHG Sbjct: 20 VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE+ IPYT SGILASAL+MDK+R+KQV + G+P + + Sbjct: 80 RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPTPRHAVLRSEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVSSASELIDA--WKAASTYDSQVLVEQWIHGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + Y Y+ KY + ++ + +P + KE+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R+D + D K ++LE+N PGMT S+ P A AG F++L+L ++ AS Sbjct: 257 GIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVLAIL-AASV 314 Query: 299 L 299 Sbjct: 315 D 315 >gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180] Length = 308 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG ++ERE+SL SG+A AL+ G V ID D ++ L D AF +LHG Sbjct: 15 VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119 GEDG +Q LE + +PYT SG+L SAL MDK R K + CG+P +L+ + Sbjct: 75 RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS+G+ ++ + + ++ +L E+++ G+ELTC Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERA--WRAAAEFDSLVLAERWIQGMELTC 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++G +L + P + Y YE KYS+ ++ + P+ + ++ ++ LA A +G Sbjct: 193 AILGHEALPTIRLETPHAF-YDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D + D + + F LEIN PGMT S+ P A AG F +L+ ++E + Sbjct: 252 ASGWGRVDMMLDG-TGQPFLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILETS 307 >gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica] Length = 306 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L++AG ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+ G+ V P + +N + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124 Query: 121 QHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L ++ + LLIE++ Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EIAFRYDADLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD +L P + FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LYGPEYTVAILGDTALPSI-RIQPAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++++GC G R D + D + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAYKSVGCCGWGRVDIMMD-SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756] Length = 319 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 143/303 (47%), Positives = 198/303 (65%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL SG CA ALE G KV++ID + VL KPDL FN LHG Sbjct: 11 IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V L NR + Sbjct: 71 EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++K+ + P + + + SW G+++++E Y+ G+EL Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190 Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 VMG+A+ + FY YE KYS S HVLPA IP + R+A LAH A Sbjct: 191 VMGEANGPRALAVTDIRASTGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHTA 250 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCR ++RSD +D ++ + LE+N QPGMTP S+ PE AA+ G F +L+LW+VEDA Sbjct: 251 LGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDAY 310 Query: 298 CLR 300 R Sbjct: 311 ARR 313 >gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A L +AG +D+ L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+PV P + + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124 Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + + + P ++KP + GSS+G+ + L ++ H D +L+E++ Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDAL--VEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +G+ L I P FY YE KY S + + P+ + D +E+ LA Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAP-GVFYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++++ C G R D + D + + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 RKAYKSLDCSGWGRVDVMMD-SDGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13] Length = 321 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S EREVSL SGKA AL+ G D L K D F LHG Sbjct: 13 VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++ + G+P + T + Sbjct: 73 IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPTPRYTELKANTDFN 132 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GS+LG+ + + + H +L E++++G+ELT Sbjct: 133 EVVAKLGLPLIVKPACEGSTLGLTRVTDASQMKEAY--ELAATHDQSVLAEEFIEGMELT 190 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+ + Y Y+ KY S + ++ P + ++ K +Q+ ++ Sbjct: 191 CAVLERDGKPEALPMIRIIAPGANYDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQSY 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GCRG R D + K F LE+N PGMT S+ P A AG + +L + ++ Sbjct: 251 RALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLLAA 310 Query: 296 ASCL 299 A+ Sbjct: 311 ATLD 314 >gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 321 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY++ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LEIN PGM +SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 306 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L +AG +D L + D F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + K + L + ++ H +++LIE++ Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGMSKVDKADDLSSAL--AVAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWHVLGCSGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718] Length = 305 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A +AL+ + D L D F LHG Sbjct: 9 VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFDPAGQPLENLLQQGFDRVFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LEL+E+PYT SGILASAL+MDK R+K + + G+ ++++ + Sbjct: 69 RYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASSRFR 128 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP + GS+LG+ + +Q ++ + +L EQ++ GIELT Sbjct: 129 DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAY--QAAAEYDSLVLAEQFIQGIELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + Y Y+ KY S ++ + P+ + + +Q A AH+ + Sbjct: 187 AAILDDMPLPLV-RIDVAEGLYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYAHRIL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E SC Sbjct: 246 GCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILEL-SC 303 Query: 299 L 299 Sbjct: 304 E 304 >gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense SS-5] Length = 300 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 157/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA AL G+ D+ + KPDLAF VL Sbjct: 4 IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEILEYKPDLAFIVL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +QAILE L IPYT S + S ++MDK+ +K + + G+P I Sbjct: 64 HGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIFFTEEKE 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+K GSS+G+ ++ Q + + D++L+E+++ G ELT Sbjct: 124 ALNYRPDFPVVVKAPTEGSSIGVYIVNNQQEYENAVKEVFDL--DDKVLVEKFIKGRELT 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D D+ E+ V + Y + KY + + ++ PA++ D+YK +Q L ++ + Sbjct: 182 VSILDDEVFDIVEVVVSEGF-YDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKVYKLL 240 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G +R D + LE+N PGMT S+ P+ A G +F +L+ +++++ Sbjct: 241 NCKGPARVDIIL-ENDNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIKNS 297 >gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510] Length = 335 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 133/305 (43%), Positives = 203/305 (66%), Gaps = 8/305 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 +AVLMGG S+EREVSL SG A ALE+ G++V+ IDV R +G L + +PD+ FN Sbjct: 29 VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRF 116 LHG GEDG +Q +LE L +PYTHSG+ A+A++MDK +K+++ + G+ ++ Sbjct: 89 LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 H + PY++KP+ GS++G+ ++++ Q+ P+ S G+++L+E+++ G E Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GVMGD +L VTEI + Y Y KYS+ ++ H LPA IP + +E +R+A LAHQ Sbjct: 209 LTVGVMGDRALTVTEIVFQ-AQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267 Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SRSDF +D + +++LEIN QPGMTP+S+ PE AA+ G ++ L+ W+V Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327 Query: 294 EDASC 298 E+A+C Sbjct: 328 ENAAC 332 >gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath] Length = 309 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 156/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ERE+SL SGKA AL G IDV R + L + D FNV+HG Sbjct: 14 VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG++Q L L +P T SG+LASALSMDK+R+K + G+P P + Sbjct: 74 RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G+ + + + +G + E+++DG+E T Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQA--WERASGYGCAVFAERWIDGVEYT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ L + + P + Y ++ KY + + + P + E+Q L A Q + Sbjct: 192 GGMLKGVPLPLIRLETPHAF-YDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R D L D S + + +E+N PGMT S+ P A AG F+EL+ ++E + Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILETS 307 >gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 306 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG ID+ + L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD Sbjct: 65 RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + + + L ++ D++L+E + Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRVNQASELQAAL--QEAFRFDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVIGTDILPSI-RIQTASEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083] gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083] Length = 292 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 137/298 (45%), Positives = 190/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVS SSG+ACA+AL + G++V+++D + L + PD+ FN LHG GE Sbjct: 1 MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V + G+P+ SI+V + ++H++ Sbjct: 61 DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PYV+KP GSS+G+ ++ + + P L + + +++E + G ELT VMGD Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGTMP----EMVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HV+PA+IP +I+ A AH+A+GCRG+S Sbjct: 177 RPLTVTDIL--TDGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 RTDFRWDESRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292 >gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 306 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL+SG A +AL + G +D L + D F LHG Sbjct: 5 IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + V R Sbjct: 65 RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P ++KP + GSS+G+ + K + L + ++ H +++LIE++ Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGMSKVDKADDLTSAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + P+ + + +E++ L Sbjct: 183 LGGPEFTVAMLGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG +F +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMQD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393] Length = 313 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 14 IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V + Sbjct: 74 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + +LIE+++ G Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAELESAV--DFALKFDRTVLIEEWLAG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L VP+ +FY Y+ KY S N+ + PA + +E++ L A Sbjct: 192 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 251 YDVVGCRGWSRIDVIADAEGN-FRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309 Query: 295 DAS 297 ++ Sbjct: 310 LSA 312 >gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 178/308 (57%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV+ GG S ER++SL +GKA ALE G V +D + + L + D+AF LH Sbjct: 5 VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++ GV +++R D Sbjct: 65 GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124 Query: 120 S---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V+KP GSSLG+ +IKK +++ + + + +++L+E+ Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAVDTAF--EYDNEVLVEK 182 Query: 171 YVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 Y+ G E+T G+ D S+ PK+ Y +E KY+ + V+PA++ +IY + Q Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A A++ + C G++R+D + K + LE+N PGMT S+ P+ A AG F EL Sbjct: 243 KIANKAYRVLKCSGMARADLIVSKE-GKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301 Query: 289 LLWMVEDA 296 +L ++E A Sbjct: 302 VLEILEYA 309 >gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D7S-1] Length = 309 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ SAL+MDKMR+K + + G+PV +V + Sbjct: 70 RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + +LIE+++ G Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKSVDELESAV--DFALKFDNTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L VP+ +FY Y+ KY S N+ + PA + + +E+ RL A Sbjct: 188 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ] Length = 315 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL+ AG IDV + L + D AF VLHG Sbjct: 17 VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV S G+P + + Sbjct: 77 RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPRHAVPTSESDCR 136 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ + + S+ +H Q+L+EQ++ G E T Sbjct: 137 AAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAA--WLSARSHDPQVLVEQWIQGPEFT 194 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + P S Y Y+ KY + ++ + +P + +E++ L A +A+ Sbjct: 195 VALLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEAV 253 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 254 GVQGWARVDVMQDAE-GRFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADSVE 312 Query: 299 LR 300 R Sbjct: 313 AR 314 >gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 308 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 167/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +LA LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASILAELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541] Length = 306 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 162/306 (52%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P I +NR + Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + ++P + ++ D LLIE++ Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L P FY YE KY S + + P+ + E+ +A Sbjct: 183 LSGPEYTVAVLGDNVLPSI-RIQPPGVFYDYEAKYLSDETQYFCPSGLDSQREAELADIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D K + LE+N PGMT S+ P A AG F +L+ Sbjct: 242 MQAYQAVGCRGWGRVDVMQD-SDGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVAR 300 Query: 292 MVEDAS 297 ++E AS Sbjct: 301 ILELAS 306 >gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter actinomycetemcomitans D11S-1] Length = 309 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V + Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + +LIE+++ G Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAVDELESAV--DFALKFDNTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L VP+ +FY Y+ KY S N+ + PA + + +E++RL A Sbjct: 188 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H] Length = 303 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 6/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVL+GG SSER VSL SG+A AL + G V+ IDV + +A LK PD+ FN Sbjct: 3 VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +LE L +PYTHSGI ASA++MDK ++ ++++ G+PV +V Sbjct: 63 LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKP+ GSS+G+ +++ + ++ ++ G + L+E ++ G EL Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEIARTW--RFGKEALVESFIPGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T GVMGD +L VT+I ++ FY +E KY + S HV+PA++P + A AHQ Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC+G SR+DF +D + + LE+N QPGMTP S+ PE AAY G S+ EL WMV +A Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300 Query: 297 SCL 299 Sbjct: 301 LAR 303 >gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13] Length = 306 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG ID+ L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 65 RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYAG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L + H D +L+E++ Sbjct: 125 AEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY Y+ KY S ++ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13] gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13] gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 308 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +LA LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASILAELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827] Length = 306 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG ID + L D F LHG Sbjct: 5 VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + +++F S Sbjct: 65 RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + L + ++ + +LIE++ Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAAL--ALAFRFDETVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ +L P FY YE KY S + + P+ + ++ +LA Sbjct: 183 LSGPEYTVAVLGEQTLPSI-RIQPPGVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GCRG R D + D + + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 MRAYQAVGCRGWGRVDVMQD-SDGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2] Length = 306 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 165/303 (54%), Positives = 215/303 (70%), Gaps = 4/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V VL HLKPD+AFNVLHG Sbjct: 5 VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV LV+R Sbjct: 65 QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PYV+KP GGSS+G+ ++++DQ+ P L W HG+ LL E+++ G+ELTC Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 VMGD LDV FY YE KY+ S H+LPA+I +IY+ VQ L+ AH+A+GC Sbjct: 185 VMGDKVLDVI-EIESTQKFYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 RG+SRSDF FDP + LE+N QPGMT S+ PE+AA+AG SF EL+ WMVEDAS Sbjct: 244 RGVSRSDFRFDPSRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDAS 303 Query: 298 CLR 300 R Sbjct: 304 LER 306 >gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO] gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 296 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +AVL+GGIS ER +SL SG+ AL+ G V IDVD + + LK ++ FN LH Sbjct: 3 IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G+FGEDG VQAIL+ + + YT S +LASA+ DK+ + +V+ +I Sbjct: 63 GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDGYVNFPEYTI---VKKPV 119 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKP K GSS+G+ + + DL + ++++I++Y++G ELT Sbjct: 120 KESPYGFPCVIKPRKEGSSIGVHICDNSNQLYNDLSEELKKY--NEMMIQRYIEGRELTV 177 Query: 180 GV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + +G + PK FY Y KY S + +LPA + ++ Y++V + A + Sbjct: 178 SILEIGKPQILPVLELKPKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSLRAFEL 237 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G +R D + + LE+N PG+T +S P A AG SF EL+ +++ A Sbjct: 238 CGCEGFARVDGIL--KDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDAIIQTA 294 >gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 306 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG +D L + F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV G+ V P + +N Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP GSS+G+ + + + L +++ + LL+E++ Sbjct: 125 LTDSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD +L P + FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LHGPEYTVAILGDTALPSI-RIQPAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+Q++GC G R D + D + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI] gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Pelotomaculum thermopropionicum SI] Length = 318 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +AL+ + +IDV V + + DLAF LHG Sbjct: 5 VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 +GEDG +Q +LE+L+IPYT SG+LASAL+MDK +K+++ G+P P +LV + Sbjct: 65 RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124 Query: 118 -------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+K GS++G+ + K++ + L ++++ L+EQ Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182 Query: 171 YVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++ G E+T + V + Y Y+ KY++ S H++P +IP ++ Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAIK 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +LA +++GCRG++R DF+ D F LE+N PGMT S+FP+ A AG F +L Sbjct: 243 KLAVSTFKSLGCRGLARVDFIVDKQGN-PFILEVNTIPGMTATSLFPDAARAAGIEFPDL 301 Query: 289 LLWMVEDA 296 + +VE A Sbjct: 302 IEKLVELA 309 >gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 308 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 168/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V VLA LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASVLAELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170] Length = 302 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 131/302 (43%), Positives = 193/302 (63%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VLMGG S+ER VSL+SG A AL AG+ V+ +DV R V +A L +PD+ FN Sbjct: 5 VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK +K V +PV P ++ +R + Sbjct: 65 LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ ++ PYV+KPL GSS+G+ ++ W +G Q+++E+++ G EL Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTS--ETNDLPFSRDDWPYGRQVMVERFIPGREL 182 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T GVMGD +L V FY Y+ KY+ S H++PA + +++ + Q L+ LAHQA Sbjct: 183 TVGVMGDKAL-GVTEIVTDHRFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GCRG+SR+D FD + ++ LE+N QPGMT S+ PE A +AG SF +L+ W+VE A Sbjct: 242 LGCRGVSRADLRFDGET--LYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETAQ 299 Query: 298 CL 299 C Sbjct: 300 CD 301 >gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54] Length = 316 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 150/304 (49%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 FGEDG +Q LELL IPYT SG LASAL+MDK +K+V G+P + Sbjct: 68 RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLDADTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + + + ++L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAY--ALAAKFDAEVLAEQFIQGRELT 185 Query: 179 CGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + A Y YE KY S ++ + PA +P + +EV +A A+ Sbjct: 186 VAILGGGKSARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPAALPPAVAEEVADIAVRAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ EL + ++ D Sbjct: 246 RALGCEGWGRADFMLDA-DNRPWLLEMNTSPGMTSHSLVPMAARATGMSYAELCVAILAD 304 Query: 296 ASCL 299 ASC Sbjct: 305 ASCK 308 >gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21] Length = 329 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 179/307 (58%), Gaps = 9/307 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE+ G KV++ID+DR V +A +KPD+ FN LHG Sbjct: 13 IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ + YTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 73 VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELT 178 + + PYV+KP+ GSS+G+ ++ + + + +S+ D +LL E Y+ G E+T Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192 Query: 179 ---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 PKS FY ++ KY+ + HV PA IP I +A AH Sbjct: 193 AAVVDFPEGPRALAVTELKPKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKAH 252 Query: 236 QAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GC+G SR+DF +D + +F LE N QPGMTP+S+ PE A +AG + L+ ++ Sbjct: 253 KVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETII 312 Query: 294 EDASCLR 300 A+ LR Sbjct: 313 --AAALR 317 >gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 140/302 (46%), Positives = 188/302 (62%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++MGG SSER VSLSSG+ C +AL GF+V +D + L L+PD+ FN LHG Sbjct: 13 VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K ++ G+P+ S L R + + Sbjct: 73 RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +H++ PPYVIKP GSS+G+ ++ + +L D L++E +V G ELT Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELADDLP----DTLMVEAFVPGRELTVT 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V GD +L VT+I +Y Y+ KY S HVLPA++P D+Y A AH+ +GC Sbjct: 189 VQGDRALCVTDIV--TEGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246 Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 RGISR+DF +DP + LE N QPGMTP S+ PE A + G F L W+VEDASC Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306 Query: 299 LR 300 R Sbjct: 307 DR 308 >gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01] Length = 313 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 166/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A SAL+ AG IDV L K D AF VLHG Sbjct: 15 VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + Sbjct: 75 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCK 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ ++ +++ + + Q+L+EQ++ G E T Sbjct: 135 AAATELGFPLIVKPAHEGSSIGMAKVESVEALVAA--WQDAARYDSQVLVEQWIAGPEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + Y Y+ KY + ++ + +P + + E++ L A +A+ Sbjct: 193 IAVLRGEVLPPIGLGTPHTF-YDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G +R+D + D S + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 252 GTQGWARADVMQDA-SGQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310 Query: 299 LR 300 R Sbjct: 311 AR 312 >gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 321 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 183/304 (60%), Gaps = 5/304 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG ++ER VSL SG+ A ALE G V++ID+DR V +A KPD+ FN LHG Sbjct: 9 VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+L+ +PYTHSG+ S +++DK +KQ + G+P+ +V + Sbjct: 69 VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178 + PYV+KP+ GSS+G+ ++ + + W +LL E Y+ G ELT Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G +L VTE+ V +S FY +E KY+ + HV PA+IP D+ + R A AH+ + Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247 Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G SR+DF +D +F LE N QPGMTP+S+ PE A Y G S+ +L+ ++ DA Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307 Query: 297 SCLR 300 R Sbjct: 308 LADR 311 >gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582] Length = 306 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A + L +AG ID L F LHG Sbjct: 5 VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDTRDFPLAQLKAQGFSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V S G+P+ P + ++R Sbjct: 65 RGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAEFVG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + + L ++ H D +L+E++ Sbjct: 125 EAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAAL--DEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD + P FY Y+ KY S ++ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAFLGDQLMPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLSAEQESELAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A G F +L+ Sbjct: 242 ARAYRGLDCSGWGRVDVMQD-NDGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804] gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii] Length = 326 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 146/304 (48%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ER+VSL SGK AL AG D LA D F LHG Sbjct: 18 VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 +GEDG +Q LELL +PYT SG +AS+LSMDK+ +K+V G+ Sbjct: 78 RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRTPAFEVLDAQAELR 137 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + + + D++L EQ++ G ELT Sbjct: 138 TVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKE--GYAQAAKFDDEVLAEQFIAGRELT 195 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A V Y YE KY S + + PA +P + EV LA A+ Sbjct: 196 VAVLGTGAAAHALPVIEIVAPGGNYDYEHKYFSDETQYFCPADLPDAVAAEVADLAVRAY 255 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC G R DF+ D + + LE N PGMT S+ P A G S+ EL + +V + Sbjct: 256 RALGCAGWGRIDFMLDA-DNRPWLLEANTSPGMTSHSLVPMAAKAIGMSYAELCVSIVSE 314 Query: 296 ASCL 299 A+C Sbjct: 315 AACK 318 >gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 306 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG ID+ L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V S G+PV P + +NR Sbjct: 65 RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYAG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L + H D +L+E++ Sbjct: 125 AEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY Y+ KY S ++ + P+ + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + C G R D + D + LE+N PGMT S+ P A +G SF +L+ Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 292 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 134/298 (44%), Positives = 192/298 (64%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L Q D++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQDMP----DEVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLTVTDIL--TDGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15] gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter metallireducens GS-15] Length = 627 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ERE+SLSSG A AL G+ IDVDR + VL D+AF LHG Sbjct: 11 IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ ++ G+ + P ++ R Sbjct: 71 RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 I P V+KP + GSS+G+ ++KK + L +++ + +++L+E++V G E+ Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKAE--ELAAALEAAFRYDNEILVEKFVKGREIQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D ++ VPK +FY +E KY+ + H+ P +P D+Y+++ AH+A+ Sbjct: 189 VGILDDRAMGAI-EIVPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297 GC G SR DFL F LE+N PGMT +S+ PE+A AG +F EL+ ++ AS Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306 >gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 319 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + S+ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKSASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + S+ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKSASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 306 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P I +NR Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M S + + P +KP + GSS+GI + + + L ++ H D++L+E + Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAAL--VEAFRHDDEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSI-RIQTSSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N] gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N] Length = 317 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 154/304 (50%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG AL AG D L + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 FGEDG +Q LELL IPYT SG+ ASAL+MDK+ +K+V G+P ++ T Sbjct: 68 RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPTPAFEEIDSDTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + +S + +L EQ+V G ELT Sbjct: 128 RVPDRLGLPLILKPPHEGSTVGITKVAACADMEQAYAAASH--FDEVVLAEQFVRGRELT 185 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 +A V Y Y+ KY + + + PA +P+ + ++++++A A+ Sbjct: 186 VALLGSGRNARALPVIEIVAPDGNYDYQNKYFTDVTQYFCPADLPVGVAEQIEKIAVQAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ EL + ++ D Sbjct: 246 RALGCEGWGRADFILDGQ-NQPWLLEMNTSPGMTSHSLVPMAARAVGMSYAELCVAILAD 304 Query: 296 ASCL 299 ASC Sbjct: 305 ASCK 308 >gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 319 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 309 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A A+AL G +V ID++R V L + PD+ FN LHG Sbjct: 3 IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+ G+P + Sbjct: 63 KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIPTPKFLAWTGAEYAT 122 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P VIK GS++G +++++ + + + ++ Sbjct: 123 GKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGELEPAIAGALKYDLSFMAEAYLA 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 I + V + FY Y+ KY+ S H++P ++P D+ LA Sbjct: 183 GPEITAAVLGNRKPQVLPLIEIVSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAATSLA 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +GCRG +R DF+ R+ +E+N PGMT S+ P+ A AG F +L+ Sbjct: 243 GRTYALLGCRGFARVDFIV-AGGREPQVIEVNSVPGMTATSLVPDAARAAGLDFPDLVQK 301 Query: 292 MVEDA 296 +V+ A Sbjct: 302 IVDLA 306 >gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32] Length = 308 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 180/299 (60%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+EREVSL SG A AL G+ IDVDR+V + + AF LHG Sbjct: 9 IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ + G+ V P +V R + Sbjct: 69 RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+KP + GSS+G+ +++++ + + ++ + ++LIEQ++ G E+ Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESELEAAM--QDAFKYDREILIEQFIKGAEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D +L VPK +FY +E KYS + H+LPA++P D+Y++V R H+A+ Sbjct: 187 VGILEDKALGAI-EIVPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 GC G SR DFL + LE+N PGMT +S+ PE+A +G F EL+ ++ A+ Sbjct: 246 GCSGYSRVDFLVTTE-GLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303 >gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 292 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 132/298 (44%), Positives = 190/298 (63%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSLS+G+ CA+AL D G++V+++D + L +PD+ FN LHG +GE Sbjct: 1 MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG VQ +LE L IPYTHSG+LASAL+MDK R+K + + G+PV S + ++ + + H++ Sbjct: 61 DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +PPYV+KP GSS+G+ ++ + + P L ++++E + G ELT V+GD Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSADMPH----EVMVESFAPGRELTTTVLGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 L VT+I +Y Y+ KY S HVLPA +P +I+ A AH A+GCRGIS Sbjct: 177 KPLMVTDIL--TDGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE A ++G +F +L W+VEDA+C R Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292 >gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB] Length = 301 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG +AL+ G D L D AF LHG Sbjct: 7 VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQPLDALK--GYDRAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q LE++ IPYT SG+LASAL+MDK R+K + + G+ + + + Sbjct: 65 RHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDFA 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + + P +KP + GSS+G+ +K+ ++ +++ H ++ E+ V G E T Sbjct: 125 DIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEYT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ P +++Y YE KY+ ++ ++ P +P E+++ A A + + Sbjct: 183 VGII-GDEAMPIIKIEPATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRIL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G RG R DFL D K ++LE+N PGMT S+ P A G + L+ ++E A+ Sbjct: 242 GGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299 >gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC 35316] gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL+SG A + L + G +D L + D F LHG Sbjct: 5 IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + K +P L + ++ H +++LIE++ Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + P+ + +++ L Sbjct: 183 LSGPEYTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDQA 305 >gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 307 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 184/304 (60%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58 + VL GGIS ER VSL SG+ +AL +AG++V+ I+V + +A L P D+ FN L Sbjct: 6 VVVLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +L+ L IPYTHSG+ ASA++MDK ++ + G+PV LV + Sbjct: 66 HGRFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEEL 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + P+VIKP GS++G+ ++ + + ++ +S + G Q L+E+Y+ G ELT Sbjct: 126 AEQDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEIARSW--SFGGQALVEEYIPGRELT 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ D +L P+S FY YE KY+ S H+LPA++ D +K +A AH A+ Sbjct: 184 VGVLNDRAL-TVTDIRPRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHAL 242 Query: 239 GCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG +RSDF +D ++ LE+N QPG+TP S+ PE AA G F L WMVE Sbjct: 243 GCRGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQ 302 Query: 296 ASCL 299 A+C Sbjct: 303 ATCR 306 >gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553] Length = 316 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 152/304 (50%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA D F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LELL IPYT SG +ASAL+MDK +K++ G+P +++ T Sbjct: 68 RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPTPEFEVLDADTELR 127 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +IKP GS++GI + + +++ +L EQ++ G ELT Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAY--AAAARFDSVVLAEQFIIGRELT 185 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A Y YE KY S ++ PA +P + +EV +A A+ Sbjct: 186 VAVLGSGKGARALPVIEIAAPGGNYDYEHKYFSDDTQFFCPATLPDGVAEEVAEIAVKAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GC G R+DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ + Sbjct: 246 QALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVSILSE 304 Query: 296 ASCL 299 ASC Sbjct: 305 ASCK 308 >gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+EREVSL +G+A AL G++V +IDV ++ + D+AF LHG Sbjct: 5 IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++ +P L+ R + ++ Sbjct: 65 KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124 Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V+K GS++GI + ++ +P L ++ + LIEQ Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLPDAL--EEAFRYDPIALIEQ 182 Query: 171 YVDGIEL--TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++ G E+ T V + Y Y+ KY+ S H++P ++ ++ K VQ Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEIVSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNVQ 242 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA + +GC G++R DF+ D S + LEIN PGMT S+ P+ A AG SF +L Sbjct: 243 ELAVKVFKTMGCSGLARVDFIVDANSN-PYILEINTIPGMTETSLAPDAARAAGISFTDL 301 Query: 289 LLWMVEDA 296 M++ A Sbjct: 302 TDRMIKFA 309 >gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 306 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 306 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFKDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 293 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 139/299 (46%), Positives = 190/299 (63%), Gaps = 9/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 MGG S+EREVSLSSG+ACA+AL + G + V +++ DR + VL LKP N LHG +G Sbjct: 1 MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V G+PV SI+ + + + H+ Sbjct: 61 EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++PPYV+KP GSS+G+ ++ ++ + P L + ++++E + G ELT VMG Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQLSEDMPA----EVMVETFAPGRELTTTVMG 176 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D +L VT+I + +Y Y+ KY S HV+PA +P +I A AH+A+GC+G+ Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234 Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 SR+DF +D + LE N QPGMT S+ PE A G SF EL WMVEDASC R Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293 >gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str. 301020] Length = 319 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 306 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 306 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L + ++ H D++L+E++ Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P +Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 295 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 157/298 (52%), Gaps = 15/298 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA +AL+ G+ D + + + + PDLAF L Sbjct: 8 IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q++LE L I YT S SA+ MDK+ +K+++SS +PV + Sbjct: 68 HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQTFS------ 121 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V+KP + GSS+G+ + + + L + ++IEQ++ G E+T Sbjct: 122 --KDNIKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDY---KNIIIEQFIKGREIT 176 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + V FY Y+ KY S + ++ PA+I + +++ ++A + Sbjct: 177 VSILNG-KILPIVEIVVDDGFYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D + D + + LEIN PGMT S+ P+ A G SF EL+ ++E A Sbjct: 236 NCKGAVRIDMIID-KNNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292 >gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium] Length = 292 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+A AL+ K + D + L K D AF VLHG Sbjct: 2 IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S +S M+K +K + +P+ PS++ N Sbjct: 62 RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GSS+GI + + L + +W + LIE++++G E T Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKVTDQSQLNEAL--ALAWKYDQNALIERWIEGDEYTVS 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + +L +I V FY Y+ KY S ++ ++ P +P K +Q +A A +A+ Sbjct: 180 ILNNKALPAIKIIV-NRGFYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R DF+ D ++K++ LEIN PGMT S+ P A G SF EL+L ++ D Sbjct: 239 SNWGRVDFIID-KNQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292 >gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2] Length = 292 Score = 198 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 138/298 (46%), Positives = 187/298 (62%), Gaps = 8/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+ER+VSLS+G+ CA+AL DA V ++D V L + PD+ FN LHG +GE Sbjct: 1 MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 DG +Q +LE L+IPYTHSG+LASAL++DK R+K V G+PV SIL + + + H++ Sbjct: 61 DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 PPYV+KP GSS+GI ++ + + P L D++++E + G ELT VMGD Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLADDMP----DEVMVEAFAPGRELTTTVMGD 176 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +L VT+I +Y Y KY+ S H LPA IP+DI+ A AH A+GCRG+S Sbjct: 177 RALTVTDII--TDGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234 Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 R+DF +D + LE N QPGMTP S+ PE AA+ G +F E W+VEDASC R Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292 >gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 312 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D L D F LHG Sbjct: 6 VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTM 118 FGEDG VQ LELL IPYT SG++AS++SMDK+ +K++ G+ + T Sbjct: 66 RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSS+G + + + H +L EQ++ G E+T Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQCDAAY--ALASQHDSHVLCEQFIAGDEVT 183 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V G +S V Y Y+ KY + + +++PA +P + +Q L A+ Sbjct: 184 CPVWGPSSAPEALPVIRIVAPEGNYDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCKAY 243 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +GCRG +R+D + D +R + LEIN PGMT S+ P A+ AG S+ EL + +++ Sbjct: 244 QVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLLQS 303 Query: 296 ASCL 299 + Sbjct: 304 TATD 307 >gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 321 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+E EVSL S + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ DK+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYVIKPLK GSS+G+ VI ++ + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + C Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G +R++F+ + + K++ LE+N PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318 >gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1] gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR NE0994 [Aromatoleum aromaticum EbN1] Length = 309 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A +AL+ AG D + +L D AF LHG Sbjct: 13 VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P ++ T Sbjct: 73 RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPTPRYAILAGDTDWE 132 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP+ GSS+G + + + D +L E+++ G ELT Sbjct: 133 AVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAA--WERAARFDDLVLAEEFIVGAELT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +L V I P Y Y+ KY + + ++ P+ +P + + +Q L + +A+ Sbjct: 191 VPFLAERALPVIRIEAP-GGKYDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + + + LE+N PGMT S+ P A G F L L ++EDA Sbjct: 250 GCRGWGRADLMLTG-DGRPYLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306 >gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342] Length = 306 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L +L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + + L + ++ H D++L+E++ Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLQSAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P ++Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 323 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG+S+EREVSL S + + AL + G++V+ ID+ + + L +KPD+ FN LHG Sbjct: 25 IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG + +L ++ IPYTHSG+L+SAL+ +K+ S+ + + + SI+VN+ Sbjct: 85 TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELT 178 + PYVIKPL GSS+G+ VI + + +GDQ++IEQY+ G EL Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGQGRELQ 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ +L EI + K+ FY YE KY+ + H+ PA +P ++Y+++ + ++ + Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+G +R++F+ + + K++ LEIN PGM P+SI PE+AAYAG +F L+ +++ AS Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320 >gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 306 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L +L AF LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +IKP + GSS+G+ + + +P L + ++ H D++L+E++ Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSAL--ALAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P ++Q L Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 318 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SGKA AL+ G IDV + L K D AF +LHG Sbjct: 20 VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV S G+P + + Sbjct: 80 RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCI 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 140 SAVAELGLPLIVKPAHEGSSIGMAKVTSASELIDA--WKAASTYDSQVLVEQWIQGPEFT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D L + P + Y Y+ KY + ++ + +P + +E+ L A +A+ Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEAL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D + ++LE+N PGMT S+ P A AG F++L+L ++ + Sbjct: 257 GIAGWARADVMQDAQ-GQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASLE 315 Query: 299 LR 300 R Sbjct: 316 AR 317 >gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 319 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 319 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72] gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72] Length = 304 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG A +AL+ AG D +L D F LHG Sbjct: 8 VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LEL+ IPYT SG++ASAL+MDK R+K V SCG+P + + Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP+ GSS+G + + + + + ++ E+++ G ELT Sbjct: 128 AIARDLGLPIFVKPVHEGSSMGATKVTEAGQLRAA--WELAARYDSLVIAEEFISGQELT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D +L + I P Y Y+ KY + ++ + P +P + +Q L + + + Sbjct: 186 APFLDDRALPLVRIVAPDG-NYDYQHKYFTDDTRYDCPCGLPQAEEEALQALILKSARVL 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + P + + LE+N PGMT S+ P A AG SF L L ++ A Sbjct: 245 GCRGWGRADLILTPE-GRPYLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAILAGA 301 >gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense Az-Fu1] Length = 303 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 152/297 (51%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58 +A+L GG S ERE+S+ SGKA AL+ G+ D + KPDLAF L Sbjct: 5 IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q++LE L IPYT S S + MDK+ +K + + Sbjct: 65 HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLNIED 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P V+K GSS+G+ ++ + +++L+EQ++ G ELT Sbjct: 125 ALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAVEDVFKL--DEKVLVEQFIKGRELT 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D + V + FY Y+ KY + + ++ PA++P ++YK VQ + + ++++ Sbjct: 183 VGILDD-EVFDIVEVVVEEGFYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTYKSL 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 C+G +R D + D S + LE+N PGMT S+ P+ AA G SF +L+ +++ Sbjct: 242 NCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLVDRIIKS 297 >gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille] gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille] Length = 320 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 145/305 (47%), Gaps = 11/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK +AL G D LA K D F LHG Sbjct: 8 VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLAELAAEKFDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114 FGEDG +Q LE L IPYT G++ASA++MDK+ +K+V S GVP Sbjct: 68 RFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATTA 127 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 P ++K GS++G + K + + + + D +L+EQ+V G Sbjct: 128 EQLQAIAAEFGMPLMLKAPHEGSTIG--IAKVETAEGMQAGFDLCAKYDDVVLVEQFVKG 185 Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT +A + Y YE KY S ++ ++ PA K VQ LA Sbjct: 186 RELTVPVLGSGRNARALPIVEIIAPQGNYDYEHKYFSDDTQYLCPAPFDAAFTKRVQALA 245 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G +R DFL + F LEIN PGMT S+ P A AG ++ +L + Sbjct: 246 VSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLCVE 305 Query: 292 MVEDA 296 ++ A Sbjct: 306 ILRMA 310 >gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 313 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 12/309 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 +AVLMGG+S+ER+VSL+SG+ A AL G V ID + ++ L+ PD FN Sbjct: 6 IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +Q +L+ + I YTHSG+ ASA +M+K ++ V ++ G+PV +L+ Sbjct: 66 LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + PYV+KP+ GSS+G+ ++ + + + +HG +L+E+Y+ G EL Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAIARGW--SHGPHVLVEEYIPGREL 183 Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GV+ D ++ A FY YE KY++ S H LPA+I + LA AH Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243 Query: 236 QAIGCRGISRSDFLFD-----PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +A+GCRG SR+DF +D ++ LE N QPGMTP S+ PE AAY G + L Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303 Query: 291 WMVEDASCL 299 WM++ A+C Sbjct: 304 WMIDHATCR 312 >gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 308 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G +V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + + ++S +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGD--VIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L VP + FY Y KY++ + + PA++P + V + A AH+ Sbjct: 187 VDVAVLDGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] Length = 322 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 138/303 (45%), Positives = 195/303 (64%), Gaps = 3/303 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL +G A A+ALE G +VS++D + V VL L PDL FN LHG Sbjct: 14 IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV L +R + Sbjct: 74 RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H++ PPYV+KP GSS+G+ ++ + + P L + W G+Q+++E Y+ G+EL Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193 Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+G+++ + FY Y+ KYS S HVLPA IP + LA L H A Sbjct: 194 VVGESNGPRALAVTEIRSSTGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHTA 253 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +GC+G++RSDF +D ++ + LE+N QPGMTP S+ PE A +AG SF L+ W+VEDA Sbjct: 254 LGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDAY 313 Query: 298 CLR 300 R Sbjct: 314 ARR 316 >gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617] Length = 306 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK + CG+PV P + +NR MD Sbjct: 65 RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + + P +KP + GSS+GI + + + L ++ +++L+E + Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDNEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGSDILPSI-RIQTTSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + LE+N PGMT S+ P A AG +F +L++ Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] Length = 305 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL + D L D AF LHG Sbjct: 9 VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K + + G+P +L++ + Sbjct: 69 RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + L+ P ++KP + GS++G+ + + + + +L E+++ G ELT Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAY--ELAAQYDALVLAEEFIVGKELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ + Y Y+ KY S ++ + P+ + ++ E+Q A A++ + Sbjct: 187 VAILGETP-LPIVRIEITGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKVL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G R D + + + ++LE+N PGMT S+ P A AG SF +L++ +++ + Sbjct: 246 GCHGWGRVDLILT-QTGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILDLS 302 >gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946] gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 306 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + + + L ++ ++L+E + Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDHEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSI-RIQTASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K] Length = 308 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 FGEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R Sbjct: 69 RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + + ++S +++E+YV G E Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGD--VIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L VP + FY Y KY++ + + PA++P + V A AH+ Sbjct: 187 VDVAVLDGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I ++KP GSS+G+ Q + L S+++ Q+L+EQ++ G E Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD L V E+ P Y Y+ KY + + + PA + + +Q +A A Sbjct: 189 TITVLGDEVLPVIEMTTPNGF-YDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDQQGN-FYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILEQ 304 >gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5] Length = 291 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 160/294 (54%), Gaps = 7/294 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ + L +KPD F LHG Sbjct: 3 VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LE+L+IPYT S +ASA+S+DK +K++V S G+ Sbjct: 63 RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122 Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP++ GSS+G+ +++ + + L +++++E++V+G ++T Sbjct: 123 NTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKT--ERVMVEEFVEGRDMTV 180 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 G++ +L V EI Y+ + + K++Q ++ + + Sbjct: 181 GILKGEALPVVEII---PKKGVYDYECKYTKGMSEYRILKDEKLSKKLQEISLKISKFLS 237 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +R DF K+F+LE+N PGMT +S+ P A G F++L+ ++ Sbjct: 238 LKDFARIDFRVTKE-GKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxidans DMS010] gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga thiooxydans DMS010] Length = 312 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SGKA + L+ G IDV + LA + D AF VLHG Sbjct: 14 VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q L+ + +P+T SG+ AS LSM+K SKQ G+P + T Sbjct: 74 RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQATDTE 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ + +++ + + + + D ++ EQ++ G E T Sbjct: 134 QLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAI--ALALKYDDDVIAEQWIQGEEYT 191 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L + P+ Y +E KY S ++ ++ P + L+ +++Q+LA A + + Sbjct: 192 VAILDGQALPGIRLKTPREF-YDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEGL 250 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF+ D + + + LE N PGMT S+ P A AG F L+ ++E + Sbjct: 251 GMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDFDALVWRILETS 307 >gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans] gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans] Length = 334 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 11/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK +AL+ G D LA K D F LHG Sbjct: 15 VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLAELAAEKFDRVFIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 ++GEDG +Q LE L IPYT G++ASA+SMDK+ +K+V S GVP +++ T + Sbjct: 75 SYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTSA 134 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 P ++K GS++G + K + + + + +L+EQ+V G Sbjct: 135 AQLQSVAAEFGLPLMLKAPHEGSTIG--IAKVETAEGMQAGFDLCAKYEAVVLVEQFVKG 192 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V+G Y YE KY S ++ ++ PA K VQ LA Sbjct: 193 RELTVPVIGSGRNARALPIVEIRAPQGNYDYEHKYFSNDTEYLCPAPFDEAFTKRVQALA 252 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G SR DF+ + F LEIN PGMT S+ P A AG + +L + Sbjct: 253 VSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLCIE 312 Query: 292 MVEDA 296 ++ A Sbjct: 313 ILRSA 317 >gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I] gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50] gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I] gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50] gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS] Length = 316 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 149/304 (49%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P + + Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + + ++L EQ++ G ELT Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAY--ELAARFDAEVLAEQFITGRELT 185 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A V Y YE KY S ++ + PA +P D+ +V +A A+ Sbjct: 186 VAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GC G R DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ + Sbjct: 246 AALGCEGWGRVDFILDRE-NRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAE 304 Query: 296 ASCL 299 A+C Sbjct: 305 AACK 308 >gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division [Alteromonadales bacterium TW-7] Length = 306 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A +AL++ G D L L D F LHG Sbjct: 11 VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 H I ++KP GSS+G+ Q + L +++ Q+L+EQ++ G E Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDAL--INAFKFDSQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P Y Y+ KY S + + PA + +++Q ++ A Sbjct: 189 TVTVLGDEVQPVIEMTTPNGF-YDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304 >gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42] Length = 332 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 153/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D S L F LHG Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P + + T Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C +A Y Y+ KY + + + P+ +P +E+QR+ A+ Sbjct: 194 CPILGQGTEARALPVIRIEAPQGNYDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQAY 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILAS 313 Query: 296 ASCL 299 AS Sbjct: 314 ASLD 317 >gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894] Length = 306 Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L++AG +D L D F LHG Sbjct: 5 IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L +PYT SG++ASA++MDK+R+K + G+PV + + R + Sbjct: 65 RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +++ L ++ H ++L+E++ Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPAL--ELAFEHDSEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S + + PA I + +Q L Sbjct: 183 LSGPEFTVAILGDEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 MDAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026] Length = 315 Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 13 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 63 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 303 LLSWMVEDASCLR 315 >gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163] Length = 306 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTKLKEDGFTRVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRHYSE 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S ++ + P+ +P D + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAVLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ C G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY] gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY] Length = 332 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D S L F LHG Sbjct: 16 VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ + G+P + + T Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G + Y Y+ KY + + + P+ +P +E+QR+ A+ Sbjct: 194 CPILGQGAEARALPVIRIEAPQGNYDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQAY 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILAS 313 Query: 296 ASCL 299 AS Sbjct: 314 ASLD 317 >gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 301 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 119/301 (39%), Positives = 178/301 (59%), Gaps = 10/301 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLHG 60 VLMGG S+EREVSL++GK +AL+ AG++V D+ + L KPD+ FN LHG Sbjct: 7 VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 N+GEDG +Q L++L++PYTHSG+ AS L MDK +K++ S G+ V + + Sbjct: 67 NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126 Query: 121 Q-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + PYV+KP+ GSS+G+ +I+K + + ++LIE+++DG ELTC Sbjct: 127 EGTFLKMPYVVKPVSDGSSVGVYIIRKKEDAEA-----VRYEDDREILIEEFIDGKELTC 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G + VTE+ Y Y KY++ + H+LPA+IP + + A H +G Sbjct: 182 MVLGSQAHVVTELRASDEF-YDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNILG 240 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CR +SR DF ++P V LEIN PGMT +S+ PE A Y G + L ++VE+ASC Sbjct: 241 CRSVSRCDFRYNPEDG-VVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299 Query: 300 R 300 + Sbjct: 300 K 300 >gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 306 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +LIE++ Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S ++ + P+ +P D + + LA Sbjct: 183 LSGPEYTVAILGDDVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840] gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840] Length = 308 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 167/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91] Length = 306 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 105/301 (34%), Positives = 163/301 (54%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG A +AL+ + D L D AF LHG Sbjct: 9 VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFDPVGQPLEDLLKQGFDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LEL+++PYT SGILASAL+MDK R+K + + G+ ++++ + Sbjct: 69 RYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADSNFQ 128 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP + GS++G+ + Q + ++ H ++ EQ++ GIELT Sbjct: 129 EVTDRLGLPLIIKPAREGSTIGLNKVDYAQDMQSAY--QTAAQHDSLVIAEQFIQGIELT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + Y Y+ KY S ++ + P+ + + +Q A AH+ + Sbjct: 187 AAILDDVPLPLV-RIDVTEGLYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAHRIL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G SR D + D + + F+LE N PGMT S+ P A AG SF EL++ ++E SC Sbjct: 246 GCTGWSRVDLILD-KNGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILEL-SC 303 Query: 299 L 299 Sbjct: 304 E 304 >gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1] gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1] gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33] gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1] gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94] gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99] gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915] gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94] gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1] gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1] gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94] gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33] gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10] gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99] gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513] gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1] gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1] Length = 308 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032] gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032] Length = 326 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L+ AG +D L D F LHG Sbjct: 25 IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q LE L +PYT SG++ASA++MDK+R+K + G+PV P + + R + Sbjct: 85 RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + Q++ L ++ H ++L+E++ Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPAL--ELAFEHDSEVLVEKW 202 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S + + PA I + +Q L Sbjct: 203 LSGPEFTVAILGDDILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 261 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GCRG R D + D + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 262 LEAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 320 Query: 292 MVEDA 296 ++E A Sbjct: 321 ILELA 325 >gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 364 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 157/343 (45%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E EVS+ S K+ L+ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SAL MDK +K++ G+P +++ F + S P +KP Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSALGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 VP +FYSYE KY +S ++PAK+ + E++ LA ++ C G++R DF D Sbjct: 246 VPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFVDKE 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ Y+G + +LL +++ A Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453] Length = 306 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 108/299 (36%), Positives = 163/299 (54%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L + D+AFN LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 ++GEDG VQ LE L IPYT G+LASA+ MDK RSK + + +PV P ++ Sbjct: 67 SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P IKP GSS+G+ IK + + + +++ E+++ G E T Sbjct: 127 AVEAQLGLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ + +P+++FY YE KY+ ++ ++ P+ + + ++ LA A +AI Sbjct: 187 CGVIYRKAFPSI-KIIPQNEFYDYEAKYNRDDTIYLCPSDLIPADEQLMRDLALKAFEAI 245 Query: 239 -GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL D K++ LE N PGMT S+ P+ A AG +F +L + +++ A Sbjct: 246 GGGNNCGRVDFLRDA-DGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKTA 303 >gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731] Length = 310 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AV+MGG S EREVSL++G A +AL++ G+ ID+D + L + FN +H Sbjct: 7 VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFNAVH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K + + VP I +++ Sbjct: 67 GLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQ 126 Query: 120 SQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 I P V+KP GSS+G++++K ++ + L ++ +GD +L E + G Sbjct: 127 DPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLDDALQEAF--QYGDHVLCEAFFTG 184 Query: 175 IELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+ GVM + P +FY + KY+ +T+ PA + + +Q++ Sbjct: 185 KEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQKI 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++A+GC G++R+D + + LE+N PGMT S+ P+ AA G SF +L Sbjct: 245 AVAAYEALGCSGVARTDLML-ADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCE 303 Query: 291 WMVEDA 296 +++ A Sbjct: 304 KILKTA 309 >gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M] gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M] Length = 315 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 13 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 63 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 303 LLSWMVEDASCLR 315 >gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4] Length = 305 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 167/302 (55%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS+EREVSLSSGK +AL+ G +V ID L +L+ DL + LHG Sbjct: 3 IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPVCPSILVNRFT 117 +GEDG VQA+L++L I Y SG+ SAL+MDK +SK + Sbjct: 63 RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P V+KP + GS++GI + ++ + + ++ + +L+E+++ G E+ Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEELLNGIEEAFKL--DETVLLEEFIKGREV 180 Query: 178 TCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T VMG+ + VPK+ +Y YE KY++ S H++PA++ + VQ+ A LA Sbjct: 181 TVAVMGNKGREKALPVVEIVPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVLA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 HQA+GC SR DF+ LE+N PGMTP S++P+ A G S+ E++ V+ Sbjct: 241 HQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFVQ 300 Query: 295 DA 296 + Sbjct: 301 LS 302 >gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330] gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330] gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686] Length = 308 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700] Length = 309 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A AL G+ ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + Sbjct: 70 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129 Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 M + P ++KP GSS+G+ +K + + + + +LIE+++ G Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEELESAV--DFALKFDRTVLIEEWLAG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ L VP+ +FY Y+ KY S N+ + PA + + +E++RL A Sbjct: 188 DEFTVPVLDGEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 319 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 291 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 160/295 (54%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S E E+S S K+ AL+ G +V ++++D ++ L KPD F LHG Sbjct: 3 VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE+ YT SA+ MDK +K+V+ + +PV + Sbjct: 63 SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETFFQGDKIE 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V+KP + GS++GI V+K + S + ++ + +++IE+Y++G E+T Sbjct: 123 PVEI--PCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L V ++ FY ++ KY + + +PA + L + +++++++ + + C Sbjct: 179 VLNGFALPPV-EIVTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF D + + LE+N PGMT S+ P+ A AG F +L+ ++E Sbjct: 238 KGAIRIDFRIDKWNN-PYVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILES 291 >gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301] Length = 312 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 156/302 (51%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL+ G D L D F LHG Sbjct: 13 VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFDPRDKPLHDLEV--FDRVFINLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG +Q LE+L IPYT SG++ASA+ MDK R+K + + V + Sbjct: 71 RYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNVITPDFELVTATSDFA 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSSLGI +K+ + ++ ++ E++++G E T Sbjct: 131 AIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA--EADPLVIAEKFINGGEYT 188 Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 G++GD VPK++FY +E KY ++ ++ P + + ++Q+ A A Sbjct: 189 VGIIGDGKGGYQALPIIRIVPKNEFYDFEAKYLRDDTEYLCPCGLSAEKEAQIQQEALQA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + IGCRG R DFL D ++LE+N PGMT S+ P A AG SF +L++ ++E Sbjct: 249 FRTIGCRGWGRVDFLMDDAGNH-YFLEVNTSPGMTDHSLVPMAAKAAGISFEQLVVRILE 307 Query: 295 DA 296 A Sbjct: 308 LA 309 >gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 312 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 131/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D++++ +G Q L+E ++ G E+ Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKNW--TYGPQALVEAFIPGREI 184 Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD ++ DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D + + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASCL 299 VE A+C Sbjct: 305 VEQATCR 311 >gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC] gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC] gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601] Length = 322 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 152/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D + L F LHG Sbjct: 16 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P + + T Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C A V Y Y+ KY + + + P+ +P +E++R+ A+ Sbjct: 194 CPVLGQGDAAQALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEAEEREIRRIVVQAY 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ +L L ++ Sbjct: 254 RTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCLRILAS 313 Query: 296 ASCL 299 AS Sbjct: 314 ASLD 317 >gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1] Length = 323 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V+ Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + + ++L EQ++ G E T Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAY--ELAAQYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G + V Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313 Query: 296 ASCL 299 ++ Sbjct: 314 STLD 317 >gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M] gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether] gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1] gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9] gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28] gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 308 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822] gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis] Length = 316 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 148/304 (48%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SGK AL AG D LA + F LHG Sbjct: 8 VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 +GEDG +Q LELL IPYT SG LAS+LSMDK+ +K+V G+P + + Sbjct: 68 RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GS++GI + + + ++L EQ++ G ELT Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAY--ELAARFDAEVLAEQFITGRELT 185 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A V Y YE KY S ++ + PA +P D+ +V +A A+ Sbjct: 186 VAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERAY 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GC G R DF+ D + + LE+N PGMT S+ P A G S+ +L + ++ Sbjct: 246 AALGCEGWGRVDFILDRE-NRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAK 304 Query: 296 ASCL 299 A+C Sbjct: 305 AACK 308 >gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957] Length = 303 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 131/299 (43%), Positives = 192/299 (64%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 +AVL GGIS+EREVSLS+G +AL AGF+V+ ++V + ++A L KPD FN Sbjct: 4 VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK +K V ++ G+P+ +V Sbjct: 64 LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYV+KP+ GSS+G+ ++K+ + ++ ++ G Q++ E+Y+ G EL Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEIARNW--RFGPQIMAEEYIAGREL 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD L FY Y+ KY++ S H +PA+IP D+ + + A AHQA Sbjct: 182 TVAVMGDRPL-AVTEIGTGHVFYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG+SRSDF +D + K+ LE+N QPG+TP S+ PE AA+ G SF EL WMV +A Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299 >gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 306 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSAL--VEAFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILTLA 305 >gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10] gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1] gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92] gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10] gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str. 91001] gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia pseudotuberculosis IP 32953] gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516] gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua] gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92] gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F] gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125] gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola] gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516] gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. India 195] gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A] gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004] gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038] gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM D27] gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003] gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 306 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + L ++ H +LIE++ Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKAL--VEAFQHDSDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY Y+ KY S + + P+ + + +++ LA Sbjct: 183 LSGPEFTVAILGDEVLPSI-RIQPPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ A+ C G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILMLA 305 >gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ] Length = 313 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 7/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+ER+VSL SG A AL G+ + +DV +V L+L K DLAF LHG Sbjct: 11 IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ ++ G+ + P V + + Sbjct: 71 RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P V+KP++ GSS+G+ ++KK + + L ++ + +L+E+Y+ G E+ Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAAL--DEAFRYDTLVLVEKYIKGQEVQ 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ + + VPK++FY +E KYS + H+ PA++ +Y++VQ+ AHQA+ Sbjct: 189 VGILANQPIGAI-EIVPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297 GC G R DFL + + LE+N PGMT +S+ PE+A AG SF L+ + A+ Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQIACSAA 306 >gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 314 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 7/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+SSER+VSL +G A A AL G+ V +IDV + V L K D+A+ LHG Sbjct: 14 VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P P T Sbjct: 74 RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133 Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + S P V+KP + GSS+G+ V K ++ + + + LL+EQ++ G E Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAYLAAV--EDAARYAGTLLVEQFIPGRE 191 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ D +L V E+ V + + S + ++ PA +P D Y+ V + AH+ Sbjct: 192 VQGAVLDDEALGVIEVVVAREFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHR 251 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC+G SRSD + VF LE N PGMT S+ P++AA G F L +++ A Sbjct: 252 ALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGA 310 Query: 297 S 297 S Sbjct: 311 S 311 >gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001] Length = 312 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 131/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57 + VLMGG+SSER VSLSSG+ A AL G+ V +D + L KPD+ FN Sbjct: 7 VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK ++ + + G+PV ++V+ T Sbjct: 67 LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYV+KPL GSS+G+ +++ + D++++ G Q L+E ++ G E+ Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKNW--TFGPQALVEAFIPGREI 184 Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 T GVMGD ++ DFY Y+ KY S HVLPA+I K +A AH Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244 Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 QA+GC G SRSDF D + + + LE+N QPGMT S+ PE AAY G S+ EL W+ Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304 Query: 293 VEDASCL 299 VE A+C Sbjct: 305 VEQATCR 311 >gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2] Length = 319 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 306 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+DAG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S ++ + P+ +P + + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILERA 305 >gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207] Length = 302 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG SSEREVSL SG+A AL + G V ID D ++ L + DL F LHG Sbjct: 8 VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L++PYT SG+LASAL+MDK+R KQ+ G+P L+ + S Sbjct: 68 PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++KP GSS+G+ + + + + + ++ E + G E T Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAA--WADASQYNTAVIAEPLLPGPEYT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L ++FY Y+ KY S + ++ P+++ +E+Q L A ++ Sbjct: 186 VAILDGQVLPSI-RIESNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D + D + LE+N PGMT S+ P A AG SF +L+ ++ A Sbjct: 245 GCRGWGRVDVMVDHQ-GQFQLLEVNTVPGMTSHSLVPMAAKAAGLSFDQLVEKILAGA 301 >gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227] Length = 309 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 68 RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 127 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + S+ L ++ H D++L+E++ Sbjct: 128 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDEVLVEKW 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + P+ + + ++ L Sbjct: 186 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 245 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 303 Query: 292 MVEDA 296 ++E A Sbjct: 304 ILELA 308 >gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016] Length = 319 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 306 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + S+ L ++ H D++L+E++ Sbjct: 125 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + P+ + + ++ L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 306 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG L++AG +D+ L + AF LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+RSK + CG+PV P + + R MD Sbjct: 65 RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 S + P +KP + GSS+GI + + + L ++ ++L+E + Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDHEVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T GV+G L S+FY Y+ KY S + + P+ + D E++ L Sbjct: 183 LSGPEYTVGVLGTDILPSI-RIQTASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC G R D + + + LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L +AG ID L D F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + + L ++ H +LIE++ Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSAL--VEAFRHDTDVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L I P FY YE KY S + + P+ + ++ +++ L+ Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILTLA 305 >gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2] Length = 323 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + P ++KP + GSS+G+ + + + ++L EQ++ G E T Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAY--ELAAQYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G + V Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAQAGALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313 Query: 296 ASCL 299 ++ Sbjct: 314 STLD 317 >gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197] gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum SCRI1043] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S ++ + P+ + + + + LA Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ C G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1] gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P +++ R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719] gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192] Length = 319 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAK-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1] Length = 326 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG AL G D L D F LHG Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV Sbjct: 76 RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GS++G+ + + + +S + ++L E++++G E T Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLAS--RYDPEVLCEEFIEGDETT 193 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C A V Y Y+ KY + ++ + P+ +P + E++R+ A Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 254 RTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILAS 313 Query: 296 ASCL 299 A+ Sbjct: 314 AALD 317 >gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1] gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1] gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1] Length = 319 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 319 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 309 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 160/304 (52%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG AL+ AG ID R V VL D FN+LHG Sbjct: 9 VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 GEDG++Q LEL+ +P T SG+L SA+SMDK+ +K++ G+P + + Sbjct: 69 RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLPTPDYQVLDGDTDWV 128 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ ++ +P ++++ G + E++V G E T Sbjct: 129 VVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAAC--GGPVFAERWVTGTEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + + P++ Y YE KY + + + +P + + + Q LA A +A+ Sbjct: 187 AAILEGEPLPLIRLETPRAF-YDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEAV 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DA 296 G RG R D + D + + +E+N PGMT S+ P A AG F+ L+L ++ A Sbjct: 246 GARGWGRVDLMVDRV-GVPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVLRILAGTLA 304 Query: 297 SCLR 300 S R Sbjct: 305 SGER 308 >gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L AG ID L + F LHG Sbjct: 5 VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+ G+ V P + + + Sbjct: 65 RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + +++P L ++ + LLIE++ Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAAL--DLAFQFDETLLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD +L P FY YE KY S + + P+ + + E+ LA Sbjct: 183 LSGPEFTVAVLGDNTLPPI-RIQPPGIFYDYEAKYLSDETQYFCPSGLDEQLESELADLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+Q +GC G R D + D + + + LE+N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAYQVVGCEGWGRVDVMQD-SNGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLVVQ 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILRLA 305 >gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGQEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606] gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50] gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)] gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489] Length = 306 Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILDEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa] Length = 326 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG AL G D L D F LHG Sbjct: 16 VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV Sbjct: 76 RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GS++G+ + + + +S + ++L E++++G E T Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETT 193 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C A V Y Y+ KY + ++ + P+ +P + E++R+ A Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG SR+D + RK F LEIN PGMT S+ P A G S+ L L ++ Sbjct: 254 RTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILAS 313 Query: 296 ASCL 299 A+ Sbjct: 314 AALD 317 >gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39] gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39] Length = 306 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2] Length = 306 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ ++++ ++ L + ++ H +++LIE++ Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + ++ +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1] gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989] gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9] gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9] gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989] gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1] gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9] Length = 306 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37] Length = 296 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 8/301 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG S+EREVSL SG+ CA+AL G++V ++D V L + PD+ FN LHG Sbjct: 2 AVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHGR 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K + G+PV S L + + + Sbjct: 62 WGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMAA 121 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H+++PPYV+KP GSS+G+ ++ ++ + P L ++ + +++EQ+V G ELT V Sbjct: 122 HVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDETMP----EVVMVEQFVPGRELTATV 177 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 MG + + + +Y Y+ KY + S H+ PA++P DI + A AH A+GCR Sbjct: 178 MGGRA--LGVTEILTDGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGCR 235 Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+SR+DF +D + LE N QPGMTP S+ PE G SF + WMVEDASC Sbjct: 236 GVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASCD 295 Query: 300 R 300 R Sbjct: 296 R 296 >gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44] Length = 323 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG +AL+ G + D L D F LHG Sbjct: 16 VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL+IPYT SG++AS+++MDK+ +K++ G+P +V Sbjct: 76 RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + P ++KP + GSS+G+ + + + ++L EQ++ G E T Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAY--ELAAQYDAEVLCEQFIAGDETT 193 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G + V Y Y+ KY + + + P+ +P E+QR+ A Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A +G S+ L L ++ Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313 Query: 296 ASCL 299 ++ Sbjct: 314 STLD 317 >gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012] gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM 6725] gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725] Length = 364 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ ++V I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV + G+PV P + ++R Sbjct: 65 RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + +P L ++ H D +L+E++ Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L P FY YE KY S ++ + P+ + + +E+ LA Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R DF+ D + LE+N PGMT S+ P A G +F +L++ Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227] gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94] gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227] gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94] gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 307 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 6/291 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SGKA SAL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A +AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 G G +R+D + D K + LE+N PGMT S+ P A AG F++L+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307 >gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70] Length = 309 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 173/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL AGF ID L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ SAL+MDKMR+K + + G+PV +V + + Sbjct: 70 RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K+ + + + + + D +LIE+++ G Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAV--DFALKYDDTVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ + L VP+ +FY YE KY S N+ + P+ + + E+++L A Sbjct: 188 AEFTVPVLDNEVLPSI-RIVPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D + +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDG-NDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 Query: 295 DAS 297 ++ Sbjct: 306 LSA 308 >gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A] gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046] gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS] gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11] gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026] gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B] gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412] gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354] gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736] gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphonate gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine Ligase At 2.3 Angstroms Resolution gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli] gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli] gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli] gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr. W3110] gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046] gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS] gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22] gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171] gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11] gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026] gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952] gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128] gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042] gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412] gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354] gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407] gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70] gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W] gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1] gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431] gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B] gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010] gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G] gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68] gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180] gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357] gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H736] gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA143] gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA271] gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H591] gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli H299] gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D] gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D] Length = 331 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ V Y Y+ KY + ++ + PA I +D+ VQ L A+ Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688] gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688] Length = 320 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 153/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S EREVSL SG A +AL G + + D +R + +LA D F LH Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHELLA---FDRVFISLH 82 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117 G FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ + Sbjct: 83 GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+GI +K+ ++ + D L+I + G Sbjct: 143 AAVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELA---AKSDPLVIAERFVGGGE 199 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + VP ++FY +E KY ++ ++ P +P + ++ A A +A Sbjct: 200 YTVGILGDEALPIIRIVPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRA 259 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG RG R DFL D + ++LE+N PGMT S+ P A G SF EL++ ++E A Sbjct: 260 IGGRGWGRVDFLMDEA-GRHYFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317 >gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAVLGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A] gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019] gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_05] gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium CY_gF1DD01_10] gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088] gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M718] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + S G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp. 5_7_47FAA] Length = 331 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 152/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ V Y Y+ KY + ++ + PA I D+ VQ L A+ Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIAADVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113] Length = 316 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G + IDV + V L+ + AF VLHG Sbjct: 13 VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ +P + + Sbjct: 73 RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTADFSALTEDTDPA 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG++ ++ ++ +++ + E+++ G E T Sbjct: 133 VIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAI--FDTAVFAERWLSGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + + P+ Y +E KY + + + P + +Q LA A Q + Sbjct: 191 AAILADRVLPLIRLETPRVF-YDFEAKYHANTTHYFCPCGLSERQEHVLQALALEAFQVL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D D + + LEIN PGMT S+ P A AG F E++L ++E + Sbjct: 250 GASGWGRVDLRCDEKAH-PYLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILESSLE 308 Query: 299 LR 300 R Sbjct: 309 RR 310 >gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75] gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327] Length = 306 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl Phosphinate Length = 306 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE K+ S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a] gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a] gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82] gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101] gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2] Length = 306 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct] Length = 320 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG VQ +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT] Length = 308 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 169/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ + + + + + + +LIE+++ G Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT ++G+ L VP+ +FY YE KY + N+ + P+ + + +E+++L A Sbjct: 188 DELTVPILGNEVLPSI-KIVPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDGE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 Query: 295 DA 296 + Sbjct: 306 LS 307 >gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336] Length = 308 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 169/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + GF ID +L D FN+LHG Sbjct: 10 IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV Sbjct: 70 RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ + + + + + + +LIE+++ G Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G+ L VP+ +FY YE KY + N+ + P+ + + +E+++L A Sbjct: 188 DELTVPVLGNEVLPSI-KIVPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D K +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 247 YDVVGCRGWSRIDVMLDGE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305 Query: 295 DA 296 + Sbjct: 306 LS 307 >gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T] Length = 306 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520] Length = 306 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 306 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A +AL+++G D L L + F LHG Sbjct: 11 VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I ++KP GSS+G+ Q + L ++++ +Q+L+EQ++ G E Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDAL--ANAFKFDNQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E+ P Y Y+ KY S + + PA + K +Q ++ A Sbjct: 189 TITVLGDDVQPVIEMTTPNGF-YDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILEQ 304 >gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196] Length = 315 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 165/313 (52%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 13 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 63 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302 Query: 288 LLLWMVEDASCLR 300 LL WM+EDASCLR Sbjct: 303 LLSWMMEDASCLR 315 >gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905] Length = 306 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615] gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 306 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6] Length = 306 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301] gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401] gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301] gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401] gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017] gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T] gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70] gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71] gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671] gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71] gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218] gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272] gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227] gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304] Length = 306 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D +L + F LHG Sbjct: 5 IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ +++ ++ L + ++ H +++LIE++ Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + + ++Q L Sbjct: 183 LSGPEFTVALLGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC 23834] Length = 320 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 166/299 (55%), Gaps = 4/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL SG A +AL+ G + D L L +AFNVLHG Sbjct: 22 VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L+ + IPYT G+ ASAL MDK R K + + G+PV +++ T + Sbjct: 82 TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPVPDFAVLHDDTDFA 141 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ +P + + +++ E++VDG E T Sbjct: 142 AVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEYT 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G +L +P ++FY Y+ KY ++ + P+ + E++RLA +AI Sbjct: 202 CAVLGQQALPSI-RIIPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEAI 260 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G RG R DF S K++ LEIN PGMT S+ P+ AA G F +L + ++ A+ Sbjct: 261 GGRGWGRVDF-LRSQSGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318 >gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L +AG +D+ + L D AF LHG Sbjct: 5 VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q +LE L IPYT SG++ASA++MDK+R+K + CG+PV P + + R MD Sbjct: 65 RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + ++ L ++ H D +L+E + Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAAL--VEAFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+GD L S+FY YE KY S ++ + P+ + + E+ + Sbjct: 183 LSGPEYTVAVIGDEILPSI-RIKVVSEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + + + LE+N PGMT S+ P AG SF +L+ Sbjct: 242 IKAWRALGCSGWGRVDVMM-GGDGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941] gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19] gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str. 9-941] gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292] gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59] gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870] gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68] gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya] Length = 308 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 165/313 (52%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WM+EDASCLR Sbjct: 296 LLSWMMEDASCLR 308 >gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18] gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18] Length = 305 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 116/297 (39%), Positives = 189/297 (63%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L G++ IDV R + LA + + AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P +++R + Sbjct: 71 RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRG-EEL 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ ++++ Q + L + ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ ++ VPK++FY YE KY+ + H+LPA++P +Y+ V + AH A+GC Sbjct: 188 ILDGRAMGAI-EIVPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + + + LE+N PGMT +S+ PE+A +G F +L+ ++ AS Sbjct: 247 DCYSRVDFLVNEA-GECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302 >gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L + G +D L L D AF LHG Sbjct: 5 VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE +IPYT SG++ASA++MDK+RSK + G+P + + R ++ Sbjct: 65 RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + ++P L + ++ H D +L+E + Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGILGDQILPSI-KIQSASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDGEDN-FQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536] gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536] gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11] gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli TA206] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSQGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627] Length = 306 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + P+ + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89] gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1] gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88] gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89] gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1] gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88] gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA] gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034] gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146] gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263] Length = 306 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTIAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5] gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5] Length = 306 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073] gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073] gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972] gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972] gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1] Length = 306 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 306 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG A + L ++G ID +L F LHG Sbjct: 5 VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V + G+PV P + ++R ++ Sbjct: 65 RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ + L + H D +LIE++ Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKELLPAL--QEGFRHDDNVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G + P FY Y+ KY S + + P+ + +++ LA Sbjct: 183 LSGPEYTVAIVGSQVMPSI-RIQPAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+ C G R D + D LE+N PGMT S+ P A +AG SF +L+ Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4] gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4] Length = 320 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVLMGG S EREVSL SG A +AL G + + D +R + +LA D F LH Sbjct: 26 VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHELLA---FDRVFISLH 82 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117 G FGEDG VQ LEL+ IPYT SG+LAS++ MDK R+K + S G+ + Sbjct: 83 GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+GI +K+ ++ + D L+I + G Sbjct: 143 AAVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELA---AKSDPLVIAERFVGGGE 199 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + VP ++FY +E KY ++ ++ P +P + ++ A A +A Sbjct: 200 YTVGILGDEALPIIRIVPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRA 259 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG RG R DFL D S + ++LE+N PGMT S+ P A G SF EL++ ++E A Sbjct: 260 IGGRGWGRVDFLMDE-SGRHYFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317 >gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1] Length = 307 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + S Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ ++++ + + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9] gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9] Length = 308 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 142/298 (47%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ERE+SL SG+ +AL G D L D F LHG Sbjct: 12 VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 FGEDG +Q LE + IPYT G++ASA+ MDK RSK V + G+PV + Sbjct: 72 AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPVPDFRLLADDSDFA 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSSLG+ ++K + ++ + D L++ + G Sbjct: 132 AIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKF---DPLVLAEQFVGGGEY 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + P ++FY Y+ KY ++ + PA + + ++RLA + Sbjct: 189 TVALLEGRALPAIKIEPATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQGFAVL 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DFL D + + LEIN PGMT S+ P A AG ++ L L ++E A Sbjct: 249 GGSGWGRIDFLVDEA-GQPYLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLEAA 305 >gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL] gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL] Length = 364 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 162/343 (47%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+SL S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL +IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G S+ +L+ ++ A Sbjct: 306 TNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLIDKLISLA 348 >gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J] gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J] Length = 331 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG +AL G D LA D LHG Sbjct: 20 VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K+ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ V Y Y+ KY + ++ + PA IP D+ VQ L A+ Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIPADVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG R+D + F LE+N PGMT S+ P A AG S+ + +L + Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966] gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia coli O157:H7 str. EDL933] gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai] gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4196] gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4113] gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4076] gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4401] gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4486] gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4501] gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869] gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508] gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4206] gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4045] gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4042] gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC4115] gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli] gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. TW14588] gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC1212] gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125] gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044] Length = 306 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSV-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2] Length = 316 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 158/308 (51%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG AL AG D L H + AF LHG Sbjct: 7 VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ ++ G+P + Sbjct: 67 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +H + P ++KP + GSS+GI + + + + + +L E+++DG Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEMQDAV--KLASEYDADVLCEEFIDG 184 Query: 175 IELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC V A V Y +E KY S + + P+ +P E+QRL Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAPGGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRLT 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ +GCRG R+D + RK F LE+N PGMT S+ P A AG S+ +L + Sbjct: 245 LAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCVH 304 Query: 292 MVEDASCL 299 ++E A+ Sbjct: 305 VLECAALD 312 >gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G ID +L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ K + L + ++ H +++LIE++ Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGM--SKVVEENALQAALALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 170/302 (56%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 155/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SGKA AL +G D L A LHG Sbjct: 10 VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 +GEDG VQ LELL IPYT SG+LASAL+MDK R+K + S G+ I Sbjct: 70 RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GS++G+ +++ + + H +L EQ+++G ELT Sbjct: 130 AVAKELGLPLIVKPSREGSTIGLSKVREAGEVAAA--WHLAARHDAMVLAEQFIEGTELT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + + D Y Y+ KY S + + P+ + + +++ A AH+ + Sbjct: 188 ASILGDVALPLV-RIQVEGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQAHRLL 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G R D + D S ++LE N PGMT S+ P A AG SF EL+L ++ A Sbjct: 247 GCEGWGRVDLILD-KSGTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVLKILGLA 303 >gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi] gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L + ++ H +++LIE++ Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYDALQSAL--ALAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + ++ L Sbjct: 183 LSGPEFTVAILGEEILPTI-RIQPAGTFYDYEAKYLSDETQYFCPAGLETAQEALLRDLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A G SF +L++ Sbjct: 242 RKAWSTLGCKGWGRIDAMLD-SDGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L FY YE KY S + + P + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQSAGTFYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031] gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031] Length = 306 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT ++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY Y+ KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330] Length = 307 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG+A AL G D ++ L D+AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTELAKLKKQGFDIAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 +GEDG VQ LE L +PYT G+LASAL MDK R K + S+ G+P+ P ++++ + Sbjct: 67 TYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNSHFA 126 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P IKP GSS+G++ +K+ + + + +L EQ++ G E T Sbjct: 127 EVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV +L +P+++FY YE KY ++ ++ P+ + D +Q LA A +AI Sbjct: 187 CGVFNRQALPTI-RIIPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAI 245 Query: 239 -GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G + R DFL D + ++ LE N PGMT S+ P+ A G F +L + ++ +A Sbjct: 246 GGGNSLGRIDFLKDSV-GCLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILNNA 303 >gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 306 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++L+E++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1] Length = 317 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AV+ GG S+EREVSL SG A L G++V ++D+ + L ++ DLAF Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113 LHG GEDG VQA+LE+ PYT S LA L+MDK+ +K+ + G+P + Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + +S P ++KP + GS++GI + L+++ + +L+E+++D Sbjct: 130 HANADLIEEQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKAL--EYDSDILVEEFID 187 Query: 174 GIELTCGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T V+ D + P Y YE KY + ++ ++LP + D E+Q LA Sbjct: 188 GPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLAL 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++++GC G R D + D + LE+N PGMT S+ P A Y G + L+ + Sbjct: 248 DAYRSLGCFGWGRVDVMRDQA-GVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKI 306 Query: 293 VEDA 296 ++A Sbjct: 307 AQNA 310 >gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1] Length = 315 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 160/304 (52%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AVL GG +EREVSL SG +AL+ G+ ID+ DR+ L D+AF Sbjct: 8 IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 LHG GEDG +QA+L+L+ PYT S LA AL+MDK+ +K++ G+P I Sbjct: 68 IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPTPDYIADAS 127 Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + +S P ++KP + GS++GI + + L + + ++L+E++++ Sbjct: 128 DVSVECVERQLSYPVIVKPSREGSTIGISKADNTEQLMQALRDAR--EYDSEILVEEFIE 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ D + + + Y YE KY + ++ + LP+ + D ++ L+ Sbjct: 186 GPEFTVSIINDEAYPAIGLKPSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKALSL 245 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ A+GC+G R D + + LE+N PGMT S+ P AA+ G S+++L+ + Sbjct: 246 DAYLAVGCKGWGRVDVM-RRNNGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLVEKI 304 Query: 293 VEDA 296 + A Sbjct: 305 LCSA 308 >gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43] Length = 306 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14] Length = 319 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 157/302 (51%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + +E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40] Length = 308 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA+ LE+ G++V++IDVDR+V +L LK Sbjct: 6 VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS Sbjct: 56 PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ P ++ S+ W +GD++++E Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G ELTC VMGD ++DV EI FY Y+ KY + STHV PAKI +IY+++Q + Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTM 235 Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+AIGCRG+SRSDF FD +V WLEIN QPGMTP S+ P++A AG SF E Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAE 295 Query: 288 LLLWMVEDASCLR 300 LL WMVEDASCLR Sbjct: 296 LLSWMVEDASCLR 308 >gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 337 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D L K D F LHG Sbjct: 30 VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV S G+ + + + Sbjct: 90 RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGLATPEYEELTATSDWN 149 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSSLG+ +K + +P ++ +++ E + G ELT Sbjct: 150 AVVQHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAAGL--DKKVIAETCIIGDELT 207 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G +P Y + KY S + ++ P + ++ VQ LA A+ Sbjct: 208 CPLVGQGKTAEALPVIKIIPPQANYDFHNKYFSDETQYLCPTGLAPEVNAAVQTLALAAY 267 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A+GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW++ Sbjct: 268 KALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWLL 325 >gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047] Length = 306 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116] Length = 306 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GGIS+EREVSL+SG A AL + G+ ID L FN+LHG Sbjct: 8 IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKEYNVANLKKDGFHRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++DG Sbjct: 128 LDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLDG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680] Length = 314 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 15/306 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG S EREVSL SG+A A AL GF+VS +D++ + + +PD+AF LHG + Sbjct: 7 VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVADRPDVAFIALHGKY 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG VQ +L++LEIPY S +L SA+ ++K +K++++ +P P +++N Sbjct: 67 GEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKIG 126 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GSS+G ++KK++++ L ++ + +L++E+++ Sbjct: 127 LAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERFI 184 Query: 173 DGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 DG E+T DA + V +++FY YE KY+ S H++PA+I V+ + Sbjct: 185 DGTEVTASVLGNEDAEVLPLIEIVAENEFYDYEAKYTPGMSHHIIPARISERARVRVEEI 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + A CRG SR DF+ D F LEIN PGMT +S+FP+ A AG SF +L Sbjct: 245 ALKTYHAFKCRGFSRVDFIVDKNDN-PFVLEINTIPGMTSLSLFPDAARAAGMSFEDLCA 303 Query: 291 WMVEDA 296 +VE A Sbjct: 304 RLVELA 309 >gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47] Length = 364 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKVLIEQAINAREIECAVLGNDEVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH] Length = 306 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus bovienii SS-2004] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG++ + L++AG +D L AF LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---------I 111 GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+ +PV P Sbjct: 65 RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + + P ++KP GSS+G+ + + L ++ H +L+E++ Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGAL--ELAFQHDTDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L I P FY Y+ KY S + + P+ + + E+ +A Sbjct: 183 LLGPEYTVAFLGDEVLPSIRIQAP-EVFYDYDAKYLSNETKYFCPSGLSAEKELELAEIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + + LE+N PGMT S+ P A +G SF +L++ Sbjct: 242 SKAYKALGCSGWGRVD-IMDDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVVK 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)] Length = 330 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A AL+ G + + D L + D FNVLHG Sbjct: 36 VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKN--YDRVFNVLHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+ CG+ P ++ + T Sbjct: 94 RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDTDWQ 153 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q + + P ++KP+ GSS+G+ + +P +S GD ++ E+++ G E T Sbjct: 154 QVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELASGC--GDVVMAEKWIAGREFT 211 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + S+FY YE KY+ ++ + +P + + +Q L+ A +A Sbjct: 212 IVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFKA 271 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + G R D + D + + LEIN PGMT S+ P A G F +L ++ Sbjct: 272 VDAEGWGRIDAMQDE-NGNFWLLEINTVPGMTSHSLVPMAAKARGMDFEQLCWHIL 326 >gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58] Length = 319 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 156/302 (51%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG +L A IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLVELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20] gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20] gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + + + L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110] gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110] Length = 323 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL SG AL G D + L F LHG Sbjct: 12 VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPRYVRLAFDQQSR 131 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + + P ++KP + GSS+G+ ++ + + S+ + +L E++++G Sbjct: 132 EQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSA--RYDADVLCEEFIEG 189 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC V+G Y Y+ KY + + + P+ +P E+QR+ Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPEGAYDYQNKYFTDDVKYHCPSGLPEAEEHEIQRIT 249 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG R+D + RK F LE+N PGMT S+ P A +G ++ +L L Sbjct: 250 LAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLCLR 309 Query: 292 MVEDASCL 299 ++ AS Sbjct: 310 VLASASLD 317 >gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 165/306 (53%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+A AL + G+ V +IDV + + + +LAF LHG Sbjct: 5 VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++ G+P ++ Sbjct: 65 KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124 Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L+ P V+K GS++GI + + + + + +S ++ + Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQDVLVEKFI 184 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + + D + Y Y+ KY+ S H++P ++P + ++++L Sbjct: 185 SGMEVTASVLGNQDPVALPLIEITSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKIKQL 244 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A Q +GCRG+ R DF+ +V+ LE+N PGMT S+FP+ A YAG F +L+ Sbjct: 245 AVKAFQVLGCRGLGRVDFMV--QGSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQLVD 302 Query: 291 WMVEDA 296 +V+ A Sbjct: 303 KLVKLA 308 >gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368] gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14] Length = 306 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSY-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas sp. SM9913] Length = 306 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 154/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A +AL D G D L L D F LHG Sbjct: 11 VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE + +PYT S +L SAL+MDK+R K + S G+ P +V+ Sbjct: 71 RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I ++KP GSS+G+ + + L ++++ Q+L+EQ++ G E Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+GD V E++ P Y Y+ KY S ++ + PA + +++Q +A A Sbjct: 189 TITVLGDEVQPVIEMSTPNGF-YDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P A G SF +L++ ++E Sbjct: 248 VGASGWGRVDAMQDEQ-GHFYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304 >gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1] Length = 334 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D +S L F LHG Sbjct: 18 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT G++ASA++MDK+ +K++ G+P + T Sbjct: 78 RHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 137 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + +S + ++L EQ+++G E T Sbjct: 138 QALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIEGEETT 195 Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G V Y Y+ KY + + + P +P +E+QRL A Sbjct: 196 CPVLGQGAGAHALPVIRIVAPEGNYDYQNKYFTDVTQYHCPCGLPEQEEREIQRLVVEAF 255 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 256 RTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILAG 315 Query: 296 ASCL 299 AS Sbjct: 316 ASLD 319 >gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 334 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 159/319 (49%), Gaps = 25/319 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S ERE+SL SG A A AL+DAG V IDV L H + D+AF LHG Sbjct: 6 IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115 FGEDG VQ +LE+ IPYT SG+ AS ++MDK+ SK+ G+ + Sbjct: 66 YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 P VIKP GGSS+G+ +IK+ + + GD+ +E+YV G Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFH--YHVGEALKCGDEAFVERYVSGR 183 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYS-----------------YELKYSSLNSTHVLPAK 218 E T G++ SL + EI V F +E K + LN+ Sbjct: 184 EFTIGILDSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVGF 243 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + +Y + Q LA AH AIGCRG SR D L D + + LE+N PG T S+ P A Sbjct: 244 LDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKND-FYILEVNTIPGFTEKSLLPMAA 302 Query: 279 AYAGYSFRELLLWMVEDAS 297 A SF L +V+ AS Sbjct: 303 RAADISFTSLCEKIVDLAS 321 >gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1] gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1] gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8] gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1] Length = 307 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + S Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ ++++ + + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis 108] gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis 108] Length = 364 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE D + Sbjct: 186 NSGSSVGISKAKDREDLALAIHEAFLYDTKILIEQAINAREIECAVLGNDDVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++G + +L+ ++ A Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348 >gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 306 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT] Length = 302 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 146/298 (48%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL G D LA D F LHG Sbjct: 8 VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELA--GFDRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG +Q LEL+ IPYT SG++AS++ MDK R+K + + GV + + Sbjct: 66 RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGVVTPDFELVTADSNFD 125 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K + + D L+I + G Sbjct: 126 AIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALA---AKSDPLVIAEQFVGGGEY 182 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + VP ++FY YE KY ++ ++ P + + ++++ A A + + Sbjct: 183 TVGILGGAALPVIRIVPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQAFRIV 242 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D + ++LE+N PGMT S+ P A G F EL+L ++E A Sbjct: 243 GGRGWGRVDFLMDEA-GRHYFLEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILELA 299 >gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4] Length = 307 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + S Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ ++++ + + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 297 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPM-AKFLTDRLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 IS P +KP GGSS+ +K + + Q+S +++IEQ+V G E+T Sbjct: 125 EADEISFPVAVKPSSGGSSIATFKVKSFEELENAYQQASKH---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + P ++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNNDVYSSVW-IEPLNEFYDYESK-YSGKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division [Pseudoalteromonas tunicata D2] Length = 304 Score = 192 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG+A +AL G D L L+ D AF LHG Sbjct: 9 VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L +PYT SG+L SAL+MDK+R K++ + G+ ++V + Sbjct: 69 RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128 Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I ++KP GSS+G+ + + S+++ D +++E+++ G E Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGMAKAATASELNEAI--SNAFRFDDTVMLEKWITGREF 186 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ + + E+ P+ Y YE KY + ++ + PA++ + +Q LA A + Sbjct: 187 TVTMISGVAQPIVEMVTPRGF-YDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + + LE+N PGMT S+ P A G +F +L++ ++E Sbjct: 246 VGASGWGRVDAMRDQA-GQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILEQ 302 >gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 306 Score = 192 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40] Length = 314 Score = 192 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 149/293 (50%), Gaps = 6/293 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG SSEREVSL SG A AL+ G +DV + PD F LHG Sbjct: 21 VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +QA+L+ L IPYT S ASAL+MDK+++KQV S G+ + + Sbjct: 81 GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140 Query: 123 L--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L + +KP GSS+G+ V+ Q + +++ + ++L+E+ + G E T Sbjct: 141 LDSLGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAAH--YDAKVLVERRIVGREFTVA 198 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L + Y Y+ KY S + ++ P + + E+Q +A A A+GC Sbjct: 199 VLNGVALPAIGLKTDHVF-YDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAFAAVGC 257 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G R DF+ D + LE+N PGMT S+ P A +G F EL+L ++ Sbjct: 258 KGWGRVDFMQDEAGN-FYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVLEIL 309 >gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 337 Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S ERE+SL SG AL G D LA K D F LHG Sbjct: 30 VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+ S G+ + + + Sbjct: 90 RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSSLG+ +K + +P ++ +++ E + G ELT Sbjct: 150 AVVKHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAAGL--DKKVIAETCIVGDELT 207 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C A +P Y + KY S + ++ P + +I VQ LA A+ Sbjct: 208 CPLVGQGNSAEALPVIKIIPPQANYDFHNKYFSDETQYLCPTGLTAEINAAVQDLALAAY 267 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 Q +GCR R+D + D + K + LE+N PGMT S+ P A AG + +L+LW++ Sbjct: 268 QTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325 >gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325] Length = 318 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 174/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+A +AL +AGF ID L D FN+LHG Sbjct: 19 IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + IPYT G++ASAL+MDKMR+K + + G+PV +V + + Sbjct: 79 RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAV--DFALKFDETVLIEEWLAG 196 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ +L A Sbjct: 197 DELTIPVLDNEVLPAV-RIVPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVKRA 255 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + + +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 256 YDVVGCRGWSRIDVM-TDSKGQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVRILE 314 Query: 295 DAS 297 ++ Sbjct: 315 LSA 317 >gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)] Length = 325 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 + VL GG S+ER+VS +GKAC ALED G +V ID D + L L + D + Sbjct: 3 IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116 LHG GEDG+VQ +L+ L +PY SG LASAL+MDK+ SKQ+ + G+P + + Sbjct: 63 LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWDDQN 122 Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P VIKP GS++GI +++ ++S L + S ++ +E+YV Sbjct: 123 PLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSV--SSRIFLERYVP 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAAGLK 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+QA+GC G++R D DP + LE+N PGMTP S+ P+ AA G++F EL+ M+ Sbjct: 241 AYQALGCEGLARVDLRVDPEEN-PWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERML 299 Query: 294 EDA 296 +DA Sbjct: 300 QDA 302 >gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7] Length = 307 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 15 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + S Sbjct: 73 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ ++++ + + + ++L E+ + G E Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305 >gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169] gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1] gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72] gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E] Length = 333 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG A +AL G D + L D FNVLHG Sbjct: 41 VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 98 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +L+ +PYT G+LASA++MDK R + + S G+P P ++++ + S Sbjct: 99 TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 158 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G+ ++++ + + + ++L E+ + G E Sbjct: 159 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 216 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L +PK FY YE KY ++ + P+ + + +++ LA A +AI Sbjct: 217 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 275 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG SR DF K++ LEIN PGMT S+ P A AG F EL L ++ Sbjct: 276 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 331 >gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7] Length = 319 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG ++ AG IDV + L K D AF +LHG Sbjct: 21 VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SG+LASAL+MDK+R+K+V S G+P + Sbjct: 81 RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPTPDYAVLGSEDDCR 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP GSS+G+ + + + + Q+L+EQ++ G E T Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P + Y Y+ KY + ++ + +P + E++ L A A+ Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDAL 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G +G R+D + D + + LE+N PGMT S+ P A AG F++L+L ++ D+ Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 303 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 172/301 (57%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG SSEREVSL SG SA++ G V Q+D +L K D F LHG Sbjct: 3 VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLDPCSIDLSMLNLYKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115 GE G +QA+L++L+IPY SG+LASA+S++K+++K+V S+ G+ P + Sbjct: 63 GLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQS 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + I+ P VIKPL G S+G+ ++ + L +++ + D++L+EQ++ G Sbjct: 123 DILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQAL--LAAFEYDDEVLVEQFIVGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ D +L V +I F+ + K+ + ++T+ P+ + K +Q++ A+ Sbjct: 181 EYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GCRG R D L + V+ +E+N PGMT S++P AA AG ++ L+ +++ Sbjct: 239 KALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLDK 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82] Length = 306 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15] Length = 323 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 6/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL AG +DV + + + D F LHG Sbjct: 22 VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P ++ Sbjct: 82 RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPTPKFRTMSGADQAE 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP + GSS+G + K + L ++ + +L+E++++G E T Sbjct: 142 QIIDELRAPLSVKPSREGSSIG--IRKVHTAAELAHAYEAAAALDNLVLVEEWIEGPEFT 199 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D +L ++ FY YE KY + ++ + +P + + +Q LA A + Sbjct: 200 VSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAFRV 259 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR R D + D K + LE+N PGMT S+ P A AG SF EL++ +++D+ Sbjct: 260 VGCRTWGRVDIMQD-SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILKDS 317 >gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21] gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21] Length = 305 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA K ++AF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRRG-EEF 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ +++ + L ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L VPK +FY YE KY+ + H+LPA++P +Y EV R AH A+GC Sbjct: 188 ILDGKALGAI-EIVPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302 >gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 306 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901] Length = 317 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG+A A+ L + G + ++D+ + D AF LHG Sbjct: 19 VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAATFDRAFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQA+L+LL IP+T S ASA++MDK+++KQ+ S +P ++ + Sbjct: 79 EGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPTPDYRVLQSSDDFA 138 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + +KP+ GSS+G+ + + ++ ++ E V G E T Sbjct: 139 ACLQALGGSVFVKPVHEGSSIGMTCANNKEELKAAF--EAAEKFDSEVFAESTVVGREFT 196 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ L E+ +P + FY Y+ KY S + ++ P + D KE+ LA + + I Sbjct: 197 VAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSFKMI 255 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GC G R D L D LE+N PGMT S+ P A G +F EL+ ++ Sbjct: 256 GCSGWGRVDALQDEAGN-FHLLEVNTVPGMTDHSLVPMAARAVGLNFSELVAEIL 309 >gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 297 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L + G+ +D + + + L L PD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LELL I +T S + + ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPM-AKFLTDRLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 IS P +KP GGSS+ +K + + Q+S +++IEQ+V G E+T Sbjct: 125 EADEISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKH---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + P ++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNNDVYSSVW-IEPLNEFYDYESK-YSGKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A C Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297 >gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 332 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 152/296 (51%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL+ G + D L + D FNVLHG Sbjct: 38 VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKN--YDRVFNVLHG 95 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+ CG+ P + + Sbjct: 96 RGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADTDWQ 155 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP+ GSS+G+ + +P ++ GD ++ E+++ G E T Sbjct: 156 QIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAGC--GDVVMAEKWITGREFT 213 Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V S+FY YE KY+ ++ + +P + + +Q L+ A +A Sbjct: 214 IVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAFKA 273 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G +F +L ++ Sbjct: 274 VDAKGWGRIDAMQDEEGN-FWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHIL 328 >gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN] Length = 337 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D L F LHG Sbjct: 16 VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLGELRREGFARCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT G++AS++SMDK+ +K++ + G+P + T+ Sbjct: 76 RHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEETV 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P ++KP + GS++G+ + Q+S + ++L EQ+++G E T Sbjct: 136 EALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQAS--RYDPEVLCEQFIEGDETT 193 Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + P+ +P +E+QRL A Sbjct: 194 CPVLGEGAGAHALPVIRIVAPQGNYDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQAF 253 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + RK F LEIN PGMT S+ P A G S+ +L + ++ Sbjct: 254 RTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLLAT 313 Query: 296 ASCL 299 A+ Sbjct: 314 ATLD 317 >gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 335 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL G D +S L F LHG Sbjct: 19 VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT G++AS+++MDK+ +K++ G+P LV+ + Sbjct: 79 RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 138 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 Q L P ++KP + GS++G+ + +S + ++L EQ++DG E T Sbjct: 139 QALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIDGEETT 196 Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G V Y Y+ KY + + + P+ +P +E++RL A Sbjct: 197 CPVLGQGAGAHALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEQEEREIRRLVVEAF 256 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + CRG +R+D + RK F LEIN PGMT S+ P A G S+ EL L ++ Sbjct: 257 RTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILAG 316 Query: 296 ASCL 299 AS Sbjct: 317 ASLD 320 >gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3] Length = 307 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 163/299 (54%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG+A SAL G ID L D AF VLHG Sbjct: 8 VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L+IPYT S +L+SA++MDK ++KQ+ S G+P ++ + D Sbjct: 68 RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +S ++KP+ GSS+G+ + + + L ++ ++L+E +++G Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKAL--LDAFKFDKKVLLETWIEG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ A+L +DFY Y+ KY S + + P + + + +LA A Sbjct: 186 EEYTVSMLSGAALPAI-KMATDNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +IGC+G R DF+ D +++ F LEIN PGMT S+ P+ A AGYSF +L+L ++ Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVLEIL 302 >gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E] gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E] Length = 307 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 178/303 (58%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL + G+ ID L + AFN+LHG Sbjct: 9 IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V R T+D Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128 Query: 121 QHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSS+G+ + + + + + H D +LIE+++ G Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAV--DLALTHDDTVLIEEWLSG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 IE+T V+ D L +P+ +FY Y+ KY S N+ ++ PA + + +E+Q+L A Sbjct: 187 IEMTVPVLDDQVLPAV-QIIPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVKRA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + + +E+N PGMT S+FP+ AA GYSF +L++ ++E Sbjct: 246 YDVVGCRGWSRIDVM-TDANGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKILE 304 Query: 295 DAS 297 ++ Sbjct: 305 LSA 307 >gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7] Length = 319 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL +AG IDV L K D AF VLHG Sbjct: 21 VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV S G+ + + Sbjct: 81 RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + L + P S Y Y+ KY + ++ + +P + +E+++LA A AI Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G +R+D + D K + LE+N PGMT S P A AG F++L+L ++ D+ Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSVQ 316 Query: 299 LR 300 R Sbjct: 317 AR 318 >gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1] Length = 306 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202] gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60] Length = 306 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L++AG +D R L + F LHG Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + + Sbjct: 65 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124 Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T+ + + P ++KP + GSS+G+ + + L + H D++LIE++ Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPAL--VEALRHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L FY YE KY S + + P+ + + + + L Sbjct: 183 LAGPEYTVAFIGDEILPSI-RIQAAGAFYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D + LE+N PGMT S+ P A AG F +L++ Sbjct: 242 RRAYKALGCSGWGRVDVMQDAA-GEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp. novicida U112] gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112] gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1] Length = 296 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86] gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Escherichia coli M605] Length = 306 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVTILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC+G R D + D + + LE N PGMT S+ P A A SF +L++ Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 306 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ P A AG S +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061] gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus nematophila ATCC 19061] Length = 306 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L++AG +D L F LHG Sbjct: 5 VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114 GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+ +PV P + +N Sbjct: 65 RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124 Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D + P ++KP GSS+G+ + + L + ++ + +L+E++ Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGMTKVNDYAELRGAL--ALAFKYDTDVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G +GD +L I P Y Y+ KY S + + P+ + ++ +E+ +A Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDVF-YDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GCRG R D + D + LE N PGMT S+ P A AG+SF +L++ Sbjct: 242 SEAYKALGCRGWGRVD-IMDDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114] Length = 305 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 178/298 (59%), Gaps = 1/298 (0%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S ER VS+ SGKAC A++ G++V + D +++ + + PD+ FN LHG + Sbjct: 9 ILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHGKY 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++ + ++ + + Sbjct: 69 GEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIKNK 128 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + +++KP+ GSSLG+ + + + L+ E Y++G E+ V+ Sbjct: 129 ISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTAVL 188 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 G+ ++ EI ++ + S + H++P KIP + +++R+A +AH+++ CRG Sbjct: 189 GNKAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLKCRG 248 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++RSDF P + K++ LEIN QPGMT +S+ PE+A G SF EL+ WM++DAS R Sbjct: 249 VTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASINR 305 >gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2] Length = 631 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 146/298 (48%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A ++L +G D L D F LHG Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 FGEDG VQ LELL IPYT SG++AS+L MDK RSK V + G+PV ++ + Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P +KP GSS+GI +K + +++ D L+I + G Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAARH---DPLVIAERFIGGGEY 511 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + P ++FY +E KY ++ + P+ + ++Q LA A I Sbjct: 512 TVAILGDQVLPVIKIEPANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G +G R DFL + + LE N PGMT S+ P A AG SF EL+L ++ A Sbjct: 572 GGQGWGRVDFLMSEA-GQPYVLEANTSPGMTDHSLVPMAARQAGISFDELVLRVLGMA 628 >gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60] Length = 307 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL+SG+A AL G D + L D FNVLHG Sbjct: 13 VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETDISKLRD--YDRVFNVLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 FGEDG +Q +L+ IPYT G+LASA++MDK R++ V + +P P + N Sbjct: 71 TFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDFT 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ IK+ + + +L E+ + G E Sbjct: 131 AIEQQLGLPLFVKPAAEGSSVGVFKIKEVGEL--AKTYPQLKQYHGAILAEKAITGGEYA 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C ++GD L +P ++FY YE KY+ ++ + P+ + + +Q++A A AI Sbjct: 189 CSILGDEVLPSI-RIIPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFAAI 247 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G +G SR DFL D ++ LE+N PGMT S+ P A G F L + ++E Sbjct: 248 GGKGWSRVDFLRDDE-GTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILEQ 303 >gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS] Length = 323 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVS+ SG AL G D + L F VLHG Sbjct: 12 VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ + G+P + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPKYVRLAFDQQSR 131 Query: 121 QHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ P ++KP + GSS+G+ ++ + + S+ + +L E++++G Sbjct: 132 EQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSA--KYDADVLCEEFIEG 189 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC V+G Y Y+ KY + + P+ +P D E+QR+ Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPEGAYDYQNKYFTDVVQYKCPSGLPADEEHEIQRIT 249 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +GCRG R+D + RK F LE+N PGMT S+ P A AG + EL L Sbjct: 250 LAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELCLR 309 Query: 292 MVEDASCL 299 ++ AS Sbjct: 310 VLASASLD 317 >gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484] Length = 288 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 156/293 (53%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A AL G + +DV + L +KPD F LHG Sbjct: 3 VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQA+L+LL IPY SG+LASAL+MDK +K++++ G+PV I V R Sbjct: 63 PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +L P V+KP GSS+G+ V++K++ + L L + + LIE+++ G ++T G Sbjct: 123 WNL--FPAVVKPADQGSSIGLHVVEKEEDLTLALEEVWKV--SQKALIEEFIQGKDVTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D L EI Y+ + + +++Q +A H + Sbjct: 179 ILKDKPLPPIEIR---PKKGVYDYESKYTKGMTEYVFVEDPSVVEKLQEIALKVHTLLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +SR DF + LE+N PGMT +S+FP AG F +++ ++ Sbjct: 236 KDMSRIDFRLS-DDGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMVHILL 287 >gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17] Length = 342 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+ER+VSL SG+A SAL AG +DV + + + D F LHG Sbjct: 34 VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +QAIL IP+T S ++ASAL+MDK+R+K V + CG+ + Sbjct: 94 RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGLATPKFRTMASAEDAN 153 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP + GSS+GI + + ++ +L+E++++G E T Sbjct: 154 SIAAELRMPLSVKPSREGSSIGICKVTSAGELVQA--WQAAAALDTSVLVEEWIEGPEFT 211 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L ++ Y Y+ KY + ++ + +P + D +Q+LA A + + Sbjct: 212 VSLLQDRALPAIGLSTDHVF-YDYDAKYLADDTRYCIPCGLSADEELRLQQLALEAFRVV 270 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCR R D + D K + LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 271 GCRTWGRVDIMQDA-DGKFWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRILAD 326 >gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP] gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1] gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127] gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846] Length = 306 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDALGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179] Length = 311 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+EREVSL+SG A AL+D GF V ID L FN+LH Sbjct: 11 IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L IPYT G+++SAL+MDKMR+K + + G+PV +++ + T Sbjct: 71 GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130 Query: 120 SQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P ++KP GSS+G+ +KK + + + + H D +LIE+++ Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAVDTAL--THDDTVLIEEWLA 188 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E + V+G L + P +FY Y+ KY ++ + P+ + + E++ L Sbjct: 189 GQEFSVPVLGGKVLPSI-LIKPAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ +GCRG SR D + D + +E+N PGMT S+FP A GYSF +L++ ++ Sbjct: 248 AYDIVGCRGWSRIDVMTDAQ-GRFRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306 Query: 294 EDAS 297 E ++ Sbjct: 307 ELSA 310 >gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z] Length = 307 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG +SEREVSL+SG A AL G+ +D L + FN+LHG Sbjct: 9 IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG++Q +LE + +PYT G++ SAL+MDKMR+K + G+P+ +V + Sbjct: 69 RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128 Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP + GSS+G+ + + + + D +LIE+++ G Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGLTKVDSADKLKSAV--DLALKFDDIVLIEEWLSG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+GD L VP+ +FY Y KY S N+ ++ P + + + E++ L A Sbjct: 187 DELTVPVLGDEVLPAV-QIVPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GCRG SR D + D +E+N PGMT S+FP+ AA GYSF +L+ ++E Sbjct: 246 YEAVGCRGWSRIDVMTDSEGN-FRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKILE 304 Query: 295 DA 296 + Sbjct: 305 LS 306 >gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15] Length = 315 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 10/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK+ +ALE G +V +D + +L+ + A LHG Sbjct: 3 VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116 +GEDG VQA+LE+ IPYT SG+LASAL+MDK RSK G+ + + + Sbjct: 63 KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 Q P V+KP + GSS G+ + +Q + + ++ D +LIEQ++ G E Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180 Query: 177 LTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 +T V G +PK++FY YE KY+ S H+ PA+ + +Q A L Sbjct: 181 VTVPVLGAKGQEKALPVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAVL 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AHQ +GC G SR+DFL P LE N PGMT S+FP+ A G + EL+ + Sbjct: 241 AHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETFI 299 Query: 294 EDASCL 299 E A Sbjct: 300 ELAITR 305 >gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 306 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L +AG +D +L AF LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q +LEL IPYT SG++ASA+SMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ K +S LD + ++ H D++LIE++ Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGM--SKVSESRALDAALALAFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T V+G+ L P FY YE KY S + + P +E++ L Sbjct: 183 LSGPEFTVAVVGEEILPSI-RIQPAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D +++ LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 +++ A Sbjct: 301 ILDLA 305 >gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR] gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR] Length = 365 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +AV+ GG S E EVSL+S + AL +++ I Sbjct: 6 VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65 Query: 37 -----DVDRSVGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D + L +P D+ VLHG FGEDG +Q +LEL IPY Sbjct: 66 AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKP 132 G+ AS++ MDK K + + +P + R + + + P +KP Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE- 191 GSS+GI + + + + ++++E+ ++G E+ V+G+ + + Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLAC--LYDRKVVVEENINGREIEVAVLGNDEPEASIA 243 Query: 192 -IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +DFY YE KY S S +PA + EV++LA A +AI G+SR DF Sbjct: 244 GEIVPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFI 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T +S++P++ A G + +LL ++E A Sbjct: 304 KKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIELA 349 >gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523] Length = 296 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+L I +T S + +S ++MDKM SK++ +P + Sbjct: 66 GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPM-AKFLTAKLF 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1] Length = 319 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 11/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER++SL SG AL+DAG D + L F LHG Sbjct: 13 VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K+V + G+P + + Sbjct: 73 RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYVRLAPDEQTP 132 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSS+G+ + + + S+ H +L E+++DG Sbjct: 133 ERVRGVPDDLGLPLIVKPPREGSSIGVTKVLGYSQMQDAVALSA--RHDPDVLCEEFIDG 190 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC V+G+ + VP Y Y+ KY + ++ P+ +P D E+QR+ Sbjct: 191 AEVTCPVLGEGANARALPVIRIVPPEAGYDYQNKYFTDEVKYLCPSGLPADEEAEIQRIV 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GCRG R+D + RK F LE+N PGMT S+ P A AG + +L L Sbjct: 251 LAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLGYEQLCLH 310 Query: 292 MVEDASCL 299 +++ A+ Sbjct: 311 ILQGAALD 318 >gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator MP104C] Length = 306 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 179/302 (59%), Gaps = 9/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+S+EREVSL SG+A +ALE G++V IDV+R V + +LAF LHG Sbjct: 5 IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++ G+PV + DS Sbjct: 65 PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124 Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+K GSS+G+ ++++++ + + + G ++L+E+++ G E Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDL-EARITDAVAYGGTRVLVEKFIAGPE 183 Query: 177 LT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 LT + + V + Y YE KY+ S H++P ++P ++ + V LA A Sbjct: 184 LTAAVLGNREPRVLPLIEIVSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALRA 243 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GCRG +R D + + F LEIN PG+T VS+FP+ A AG SF +L+ +V Sbjct: 244 YRALGCRGFARVDLIV--SGNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLVR 301 Query: 295 DA 296 A Sbjct: 302 LA 303 >gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147] Length = 309 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL+SGKA +AL+ G D + L AFN+LHG Sbjct: 10 IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETNLAELKTQGFQAAFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LE L IPYT G+LASAL MDK R K + + G+P+ +++ + + Sbjct: 70 TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPIPAFAVLHDDSDFT 129 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P IKP GSS+G+ + + + Q N ++L EQ++ G E T Sbjct: 130 AVEQQLGLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMSGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV+ +L +P++DFY +E KY ++ ++ P+ + + + +Q LA A AI Sbjct: 190 CGVLNQQALPSI-RIIPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQAFAAI 248 Query: 239 GCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R DFL D K++ LE+N PGMT S+ P+ A G F +L + +++ A Sbjct: 249 GGGNTCGRVDFLKDAA-GKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAILQTA 306 >gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 306 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A + L + G +D L + AF LHG Sbjct: 5 IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+ V P + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L + ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGAL--ALAFQHDDEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC+G R D + + + + LE N PGMT S+ P A AG SF +L++ Sbjct: 242 LQAWKALGCKGWGRIDVMLN-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia solanacearum CFBP2957] gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CFBP2957] Length = 331 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + PA IP D+ VQ L A+ Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 258 RGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix] Length = 313 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 97/298 (32%), Positives = 143/298 (47%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ER++SL SG A +AL G +D+ R +A D F LHG Sbjct: 12 VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118 GEDG +Q L++ +PYT +G+L SAL MDK+ K++ + +P P Sbjct: 72 ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP +GGSSLGI + + +P + Q+ EQ++ G E T Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPAAFEAARVQP--GQVFAEQWITGREFT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+G+ L V EI + + + P + E+Q LA A A+ Sbjct: 190 VAVLGNEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D L D + F +E+N PGMT S+ P+ AA AG F EL L +++ + Sbjct: 250 EGCGWGRVDILQDEH-GENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSS 306 >gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica URFT1] gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis FSC198] gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica OSU18] gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis NE061598] Length = 296 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8] gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8] Length = 301 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 149/298 (50%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S EREVSL SG A +AL+ G D L D A LHG Sbjct: 7 VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFDPATRPLHDLES--FDTAMISLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 FGEDG +Q LELL IPYT SG++ASA+ MDK R+K + S+ GV + + Sbjct: 65 RFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDFE 124 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+GI +K+ + + D L+I + G Sbjct: 125 AIEQRLGLPLFVKPANEGSSIGISKVKQTGGLKAAYELA---AKSDPLVIAEQFVGGGEY 181 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + VPK++FY +E KY ++ + P + + ++Q+ A LA I Sbjct: 182 TVGILGDQALPIVRIVPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALLAFNTI 241 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+G R DFL D K ++LE+N PGMT S+ P A AG SF EL++ ++ A Sbjct: 242 GCQGWGRVDFLMDEA-GKHYFLEVNTSPGMTDHSLVPMAAKAAGISFDELVVSVLRLA 298 >gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134] Length = 327 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 158/304 (51%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + + ++ T Sbjct: 77 RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHDLSTPRFAMLYADTDFD 136 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + + + ++ E ++DG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAF--EKAAALDNDVIAETFIDGAELT 194 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ + V Y Y+ KY + ++ ++ P+ + ++ +EVQ+LA A+ Sbjct: 195 CPLVGEGATAEALPVIRIVAPDSNYDYQNKYFTDDTQYLCPSGLSAEVEREVQQLAVQAY 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + K F LE+N PGMT S+ P A AG S+ + ++ +V Sbjct: 255 RVLGCRGWARADVML-RADGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDFVMQVVAA 313 Query: 296 ASCL 299 A+ Sbjct: 314 ATLD 317 >gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 167/309 (54%), Gaps = 15/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VL----AHLKPD 52 +AV+ GG + E EVS+ S K+ + L+ ++ + +D++ +L AH D Sbjct: 5 VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + F VLHG FGEDG VQ +LEL ++PY +G+L SA+SMDK K+V +P+ + Sbjct: 65 VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +D+ + P +KP GSS+GI +Q + + + ++++E Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAK--QYDRKIIVE 182 Query: 170 QYVDGIELTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + ++G EL C V+G+ + + +P +FY YE KY + +PA +P + E+ Sbjct: 183 RGIEGRELECSVLGNEAPMASLPCEILPSREFYDYEDKYLLDMARTQVPADLPGERTDEI 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +RLA ++A+ C G++R DF + + +++ EIN PG T +S++P+M ++G F Sbjct: 243 RRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCT 302 Query: 288 LLLWMVEDA 296 LL ++E A Sbjct: 303 LLDQLIEFA 311 >gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 298 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL SG+A +L G+K ID+DR V ++ D+ F LHG Sbjct: 6 VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L+++ +PYT S A+ ++ DK+ SK+ GV I +N Sbjct: 66 TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNAPKKGM 125 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 VIKP + GSS+GI +++ ++ L ++ + ++++E+ + G+ELT Sbjct: 126 PFEC---CVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V PK Y YE KY+ + +V + + V+ A A +GC Sbjct: 181 ILDGETLPVIC-IRPKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G R+D ++D R + LE+N PGMT S+ P+ A AG SF ++ M+ A + Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGAFKDK 297 >gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1] Length = 304 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER++SL SG A +AL+ G+ D L D+ F LHG Sbjct: 13 VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L+LL IPYT SG+L SAL MDK R K++ G+P L+ Sbjct: 71 RGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPVL 130 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP + GSSLG+ ++ + + ++ + D +L E +V+G E T Sbjct: 131 DEGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAA--AYDDTVLAEAWVEGEEYTVA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L + P + + Y KY + ++ H P+ + + E+ L A A G Sbjct: 189 LLGDQALPSIRLETPHAF-FDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIASGG 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D + D + + LE+N PGMT S+ P AA AG F EL+ ++ +A Sbjct: 248 NGWGRVDVMRDT-GGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302 >gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 296 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPM-AKFLTDKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359] Length = 312 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 +AV++GG S+E VS +SGK A+AL G+ + V L + D+ FN LH Sbjct: 9 IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITELVPEEWARTLKEGQFDIVFNALH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117 G +GEDG++Q E++ IPYT G++ASA+ M+K+ SK G+ P Sbjct: 69 GRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPFRYYFEEQGV 128 Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P VIK GSS+G ++++K + L ++ +G ++ E ++ Sbjct: 129 DSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSALSEAF--AYGKSIVAEAFLS 186 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM + + V + K+ Y YE KY+ S H+ PA+IP ++ KE+Q L+ Sbjct: 187 GREFTVAVMDELAFPVI-EIISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQDLSLA 245 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C+G++R D + D + K + LEIN PGMT S+ P+ + G F +L ++ Sbjct: 246 VFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDLCERIL 304 Query: 294 EDASCLR 300 E+AS + Sbjct: 305 EEASTGK 311 >gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct] Length = 296 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana) tropicalis] Length = 334 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG AL G D + L F LHG Sbjct: 20 VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHASLADLKTHGYTRCFIALHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL IPYT SG++AS+++MDK+ +K++ G+P + T Sbjct: 80 RHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAAETA 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + ++ H ++L EQ++DG E T Sbjct: 140 QALAALGAPMIVKPAREGSTIGLTKVTSPGQCQQAYRLAA--QHDPEVLCEQFIDGDETT 197 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G + V Y Y+ KY + + + P+ +P + +QRL A+ Sbjct: 198 CPVLGQGASATALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEAEERAIQRLVERAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + R+ F LEIN PGMT S+ P A AG S+ L L ++ Sbjct: 258 RTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALCLRILAS 317 Query: 296 ASCL 299 AS Sbjct: 318 ASLD 321 >gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 288 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 162/293 (55%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSERE+SL +G+A + AL+D G +V ++D+ + L +KPD F LHG Sbjct: 3 IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L++L IPYT +G+L SA++MDK +K+++SS G+P P V R Sbjct: 63 PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRGEEPV 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P V+KP GSS+G+ V+ + + + + D++L+E +++G ++T Sbjct: 123 W--RDFPAVVKPADQGSSVGLSVVHSEAELGKAVKELFELT--DKVLVESFIEGRDMTVA 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L V EI K Y+ + ++ + +Q A ++ +G Sbjct: 179 ILKGKALPVIEI---KPIKGIYDYESKYTRGKTEYTFLEEGELSERLQDTALRVNELLGL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++R DF D + LE+N PGMT +S+FP AG SF+E+L ++ Sbjct: 236 KDMARVDFRVDGEGN-PYVLEVNTVPGMTELSLFPMACEKAGMSFKEMLSIIL 287 >gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp. HTCC7211] Length = 304 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GGIS ER +SL +G A L+ G+++ + D+S+ + KP + FN LHG F Sbjct: 7 ILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119 GEDG +Q ILE +IPYTHSG++AS+++MDK SK++ + I + ++ Sbjct: 67 GEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINLEL 126 Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KP+ GSS+ + + K Q++IE+++ G E Sbjct: 127 VNKINKELKFPVVVKPINEGSSVNVFICTK----KNINQILKKMKSYKQVMIEEFIGGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +MG+ L E+ + + ++ + H++P + + EV +A AH+ Sbjct: 183 IQVAIMGNKKLGAIELKPKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIALKAHK 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGCRG++RSDF F K + LEIN QPGMT +S+ PE+AAY G SF +L+ W+++DA Sbjct: 243 KIGCRGVTRSDFKF--YKNKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINWILKDA 300 Query: 297 SCLR 300 S R Sbjct: 301 STKR 304 >gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866] Length = 306 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21] gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII] Length = 330 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 32 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 91 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 92 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 151 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 152 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 209 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 210 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 268 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 269 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 327 Query: 295 DA 296 + Sbjct: 328 LS 329 >gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum PSI07] Length = 331 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + PA IP D+ VQ L A+ Sbjct: 198 CAVIGEGESATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 258 RGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 57/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL+S K+ + + ++V I ++++ +L Sbjct: 14 IGLIYGGRSGEHEVSLNSAKSVIANINSDKYEVVPIAINKTGKWLLGVEPTRMIEAEKST 73 Query: 47 ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72 D+ F V+HG GEDG +Q +L Sbjct: 74 QAEAELEQSTAVTFTGDPNLRRLIPVNGSQEQLENQGAIDVIFPVMHGTTGEDGALQGML 133 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 ++ ++PY G+L SAL MDK + K + G+PV ++ R + + Sbjct: 134 DMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYLVYRRNQWERDPESILNAIEEQ 193 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP+ GSS+GI + + ++ ++ + E Sbjct: 194 LNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAAEYDRKVIIERNINCREFECAVLGND 253 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + V VP ++FY Y+ KY S + PA+I ++ +E++R A +A ++ G+ Sbjct: 254 EPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEISQELSQEMRRQALIAFTSLDLSGL 313 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF + + KV+ E+N PG T VS++P + +G + EL+ +VE A Sbjct: 314 SRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEASGIPYPELIDRLVELA 366 >gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 308 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 159/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL+SG+A AL G D + L D AFN+LHG Sbjct: 12 VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETPLGELKTQGFDCAFNILHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LE L I YT G+LAS++ MDK RSK + G+PV ++ + Sbjct: 72 VFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPVPDYAVLRDDSDFD 131 Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP GSS+G++ +K+ + + + +++ E ++ G E T Sbjct: 132 AVERQLGLPMFVKPANEGSSVGVVKVKEAGRLKEVYHELKQFR--GEIIAEAFIGGGEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CG++ +L +P ++FY E KY ++ ++ P+ + + + ++ L A AI Sbjct: 190 CGILNGRALPSV-RIIPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRAFHAI 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D S +++ LE N PGMT S+ P+ AA G+ F +L + +++ A Sbjct: 249 GGRGWGRIDFLKDE-SGRLYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILKTA 305 >gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65] Length = 301 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 153/297 (51%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+EREVSL SG+A AL +ID R++ LA K D AF LHG Sbjct: 7 VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE IPYT SG+ ASA+ MDK RSK + +P + Sbjct: 67 VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P ++KP GSS+GI + + + + + G +L EQ+V+G+E T Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAKQT--GSSVLAEQFVEGLEFT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ +L ++ Y Y KY ++ +++P + + +Q LA A+Q++ Sbjct: 185 VGILDGKALPAIQLKAANDF-YDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 C G R D + D + +E+N PGMT S+ P A G SF L+L ++E Sbjct: 244 DCHGWGRVDVMQDAK-GDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILET 299 >gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6] Length = 288 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 8/293 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S ERE+SL +G+A A+ + G + +D++ ++ L +KPD F LHG Sbjct: 3 VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPYT SG+L S L+MDK +K++++ +PV I V R Sbjct: 63 TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H S P V+KP GSS+G+ ++K + + + S +H ++LIE+Y+ G ++T G Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L EI K Y+ + + K++Q +A + H+ + Sbjct: 179 ILKGEALPPVEI---KPKKGIYDYESKYTKGMSDYVFLEDEKLIKKLQDIALMVHKYLEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ISR DF + LE N PGMT +S+FP M G F+E++ ++ Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMIHMLL 287 >gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5] Length = 315 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 7 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 67 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +G L+E+++ G EL Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAIADAW--TYGPLALVEEFIPGREL 184 Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD + D+T +FY Y KY + S H+LPA+I D + + LA A Sbjct: 185 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 244 Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 245 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 304 Query: 290 LWMVEDASCL 299 WMVE A+C Sbjct: 305 RWMVEHAACR 314 >gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655] gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA] gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 306 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVSVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 306 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S S+ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D + + LE N PGMT S+ A AG SF +L++ Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12] Length = 342 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + + Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAA--RFDSRVLVEQFIEGDEVT 192 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G V Y YE KY S ++ ++ P+++P D +Q L ++ Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLHSY 252 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L ++ Sbjct: 253 RTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILSM 312 Query: 296 ASCL 299 A+ Sbjct: 313 AALD 316 >gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 645 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 + VL GG+S+ER VSLSSG ++AL + GF V +D +G ++A L +PD+ FN Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK ++ + G+PV ++ Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + PYVIKPL GSS+G+ +++ + + + +G L+E+++ G EL Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAIADAW--TYGPLALVEEFIPGREL 514 Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD + D+T +FY Y KY + S H+LPA+I D + + LA A Sbjct: 515 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 574 Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GC G SR+DF +D ++ LE+N QPGMTP S+ PE A G + L Sbjct: 575 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 634 Query: 290 LWMVEDASCL 299 WMVE A+C Sbjct: 635 RWMVEHAACR 644 >gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp. holarctica LVS] gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp. holarctica LVS] Length = 296 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 6 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 66 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 125 AEDEISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 >gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC 33392] Length = 316 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 18 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + Sbjct: 78 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENAHE 137 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 138 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--DYALKFDNTILIEEWLAG 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G L VP+ +FY Y+ KY S N+ + PA + + +E+ +L A Sbjct: 196 DELTVPVLGGEVLPAV-RIVPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELAKLVKRA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ A+ G SF +L++ ++E Sbjct: 255 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 313 Query: 295 DAS 297 ++ Sbjct: 314 LSA 316 >gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1] gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 355 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 39/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S E +VSL + ++ +A+ F V I + + Sbjct: 14 GILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNELA 73 Query: 46 ---------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 L D+ F +LHG GEDG VQ +LELL +PY +G+LASA+ MDK+ Sbjct: 74 FQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVVM 133 Query: 97 KQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 KQ+ + G+ + + + I P +KP GSS+GI K Sbjct: 134 KQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKNR 193 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + ++++E+ + G E+ V VPK +FY YE K Sbjct: 194 EQLQTAFQEAF--RYDRKVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEAK 251 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y N+ +PA + Y+ ++++A A + + G+ R+DF +V+ E+N Sbjct: 252 YVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADFFLTA-DGEVYINEVNTM 310 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP S+FP + + G + EL+ +++ A Sbjct: 311 PGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341 >gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative [Nitrosococcus oceani AFC27] Length = 316 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG S+ERE+SL SG A +L G + IDVD+ V L+ + AF LHG Sbjct: 13 VVVLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++ +P ++ R T Sbjct: 73 RGGEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDTNPA 132 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG++ ++ +++ ++ + E+++ G E T Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVI--FDTAVFAERWLPGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D L + + P+ Y +E KY + + + P + +++Q LA A QA+ Sbjct: 191 AAILADRVLPLIRLETPRVF-YDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G R D D + + LEIN PGMT S+ P A AG F E++L ++ + Sbjct: 250 GASGWGRVDLRCDEKAH-PYLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVLQILASSLE 308 Query: 299 LR 300 R Sbjct: 309 RR 310 >gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG] gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG] Length = 306 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVS +SG+A AL G+ ID L + AFN+LHG Sbjct: 8 IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303 Query: 295 DA 296 + Sbjct: 304 LS 305 >gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685] Length = 307 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A + L+ AG +D L F LHG Sbjct: 6 VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV + G+PV P + + Sbjct: 66 RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125 Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T+ + + P ++KP + GSS+G+ + + L + H D++LIE+ Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVNEPCEFDPAL--VEALRHDDEILIEKC 183 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD L +FY YE KY S + + P+ + + + + L Sbjct: 184 LVGPEYTVAFIGDEILPSI-RIKAAGEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D S + LE+N PGMT S+ P A AG SF +L++ Sbjct: 243 KRAYQALGCSGWGRVDVMQDE-SGRFCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301 Query: 292 MVEDA 296 ++E A Sbjct: 302 ILELA 306 >gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str. Tucson] Length = 306 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG A + L + G ID + L + F LHG Sbjct: 5 VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LELLE+PYT SG++ASAL MDK RSK + S +PV P + +NR Sbjct: 65 RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+G+ + + ++ + L ++ + D++L+E++ Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGMSKVSESSTLEVAL--EEAFRYDDEVLVEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L FY Y+ KY S N+ + P+ + + E+ LA Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQSAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+ CRG R D + D + LE+N PGMT S+ P A G SF +L+ Sbjct: 242 LRAYRALDCRGWGRIDLMQD-SDGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLVTR 300 Query: 292 MVEDA 296 ++ A Sbjct: 301 ILALA 305 >gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003] Length = 317 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 144/295 (48%), Gaps = 9/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 16 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERPLAALKEEGFVRAFNALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 76 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 135 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + + +++E+ ++G Sbjct: 136 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--VEAVKYDRIVVVEKSIEG 193 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + D ++ LA A Sbjct: 194 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVLARRA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 254 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 307 >gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551] gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum MolK2] gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum IPO1609] Length = 331 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + G+P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ+++G ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARL--DRDVMAEQFIEGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + PA IP ++ VQ L A+ Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 258 RSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As] Length = 378 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SGK +AL+ G D L AF LHG Sbjct: 15 VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 +GEDG VQ LELL IPYT G+LASAL++DK +K++ + + Sbjct: 75 RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P + K GS+LG+ + + L+++ ++L+EQ+++G E+T Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAA--RFDSRVLVEQFIEGDEVT 192 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G V Y YE KY S ++ ++ P+++P D +Q L ++ Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLRSY 252 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + R+ F LEIN PGMT S+ P A AG + +L L ++ Sbjct: 253 RTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILSM 312 Query: 296 ASCL 299 A+ Sbjct: 313 AALD 316 >gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem] Length = 305 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 125/297 (42%), Positives = 187/297 (62%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SGKA ++L GF+ IDV R + LA + +LAF LHG Sbjct: 11 IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P ++ R + Sbjct: 71 RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRRG-EEL 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP + GSS+G+ +++ + L ++ + ++LIE ++DG E+ G Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L +PK +FY YE KY+ + H+LPA++P +Y EV R AH A+GC Sbjct: 188 ILNGKALGAI-EIIPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 SR DFL + F LE+N PGMT +S+ PE+A AG +F EL+L +++ AS Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302 >gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1] Length = 317 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 9/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG+ AL G +D ++ LA K D FN+LHG Sbjct: 20 VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----VNR 115 GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV S +P + Sbjct: 80 GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P ++KP GSS+G+ + + + + + + + ++L+EQ V G Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDGLDEAI--ALAARYPGEMLMEQMVVGD 197 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELT GV+GD +L VP+ ++Y Y KY + ++ ++ P D V+ LA A Sbjct: 198 ELTVGVLGDIALPSI-RIVPRGEWYDYNAKYIAEDTQYLCPGLEGEDE-LRVRELALAAF 255 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A GC G R D + + + LE+N PGMT S+ P+ AA G F EL ++E Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILEQ 315 >gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1] Length = 313 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 145/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SG+ L +AG D L AFN LHG Sbjct: 12 VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT G+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDHA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ VIK + L + H +++E+ ++G Sbjct: 132 ARAAEIVAKLGLPLFVKPASEGSSVA--VIKVKDAAALPAALDEAGRHDRIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P I E +RLA A Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GC G R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FEVLGCSGWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703] Length = 304 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV +++ + Sbjct: 67 TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEEFKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9] Length = 359 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL IPY Sbjct: 66 KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------TMDSQHLISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + ++ +P L ++ ++ + IE + + V V Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIEKGIEAREIECSVLGNENPEASVAGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y KY + + +PA +P + +E+++LA A++A+ RG++R DFL D Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFLMDRN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V+ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 306 TGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348 >gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 306 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G+ ID L D FN+LHG Sbjct: 8 IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V + + Sbjct: 68 RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENANE 127 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP GSS+G+ +K + + + + + +LIE+++ G Sbjct: 128 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--DYALKFDNTILIEEWLAG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT V+G L VP+ +FY Y+ KY S N+ + PA + ++ +E+ +L A Sbjct: 186 DELTVPVLGGEVLPAV-RIVPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLVKRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +GCRG SR D + D +E+N PGMT S+FP+ A+ G SF +L++ ++E Sbjct: 245 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 303 Query: 295 DAS 297 ++ Sbjct: 304 LSA 306 >gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 320 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 27/319 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++SL SG A + L +AG ID + L AF LHG Sbjct: 5 VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK + G+PV P + +NR + Sbjct: 65 RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124 Query: 121 Q-----------------------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + P ++KP + GSS G+ ++ + L ++ Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDALKKA 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +++L+E++ G ELT ++GD L I V FY Y+ KY S + + P+ Sbjct: 185 WH--YDEEILVEKWHFGTELTVAILGDTVLPSIRIQVS-DIFYDYQAKYVSDKTQYFCPS 241 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + K++ L+ A++A+GC G R D + D + +EIN PGMT S+FP Sbjct: 242 GLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDE-GHFYLMEINTAPGMTDHSLFPMA 300 Query: 278 AAYAGYSFRELLLWMVEDA 296 A AG+SF EL+ ++ A Sbjct: 301 ARQAGFSFSELVCKILSLA 319 >gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 308 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG +AL G D LA AF LHG Sbjct: 9 VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLA--GFARAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q LEL+ IPYT SG++ASAL MDK R+K + + G+PV P ++++ T + Sbjct: 67 RYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDLA 126 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+GI +K+ + ++ + H ++ E+ + G E T Sbjct: 127 AVEAALGLPLFVKPACEGSSIGITKVKRPGELAAA--RAEAARHDSLVIAERAILGGEYT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + P ++FY YE KY ++ + P + E+++ A A + + Sbjct: 185 VAIL-GNAALPIIKIEPSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRVL 243 Query: 239 GCRGISRSDFLFDPLSRKV----FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G RG R DFL D + ++LE+N PGMT S+ P A AG S+ +L++ ++ Sbjct: 244 GGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVVRILA 303 Query: 295 DAS 297 A+ Sbjct: 304 LAT 306 >gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab] Length = 323 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 + +L GG S+ER+VSL +GKAC ALED G + ID + + L L + D + Sbjct: 3 IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115 LHG GEDG+VQ +LE L +PY SG LASAL+MDK+ SKQ+ + G+P ++ + Sbjct: 63 LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPTPEWLVWDEAQ 122 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P V+KP GS++GI + + + S+ L +SS ++ +E+Y+ Sbjct: 123 PLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASSV--SSRVFLERYIP 180 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+T ++ L EI + DFY YE KY+ S H++P + + Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEAAGLR 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++ +GC G++R D D + LE+N PGMTP S+ PE AA G++F EL+ M+ Sbjct: 241 AYRVLGCEGLARVDLRVDA-DENPWVLEVNTLPGMTPTSLCPEAAAALGWTFTELVERML 299 Query: 294 EDA 296 +DA Sbjct: 300 QDA 302 >gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581] Length = 305 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 166/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG+A +AL+ G D L L PD F LHG Sbjct: 8 VVVLYGGDSAEREVSLKSGEAILAALQRGGVAPIAFDPAEGGLAGLEALAPDRVFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q L+LL IPYT SG+LASAL MDK R+K V + G+P +++N + + Sbjct: 68 RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAESDWN 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP+ GS+LGI ++ +++ ++ ++ +++ E+++ G E T Sbjct: 128 AVVERLGLPLIVKPVHEGSTLGITIVDSAETLAAAYRDAARYD--ARVMAERFIQGEEYT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + VP S FY YE KY S + + LP + K + L A +A+ Sbjct: 186 VSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEAV 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D + D + + LE+N PGMT S+ P+ AA+AG F L+L +++ A Sbjct: 245 GCRGWGRVDVMRDDQ-GRFWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301 >gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 359 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------TMDSQHLISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + ++ +P L ++ ++ + IE + + V V Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIEKGIEAREIECSVLGNENPEASVAGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y KY + + +PA +P + +E+++LA A++A+ RG++R DFL D Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFLMDRN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V+ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 306 TGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348 >gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 302 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL G S EREVSL SG+A +ALE G +V+ +D + + L PD + LHG Sbjct: 3 ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNR 115 + GE+G +Q +L+ L +PY SG+ ASA++MDK+ SK++ + G+P + Sbjct: 63 DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GGS++G+ + ++ +P + + + Q+LIEQY+ G Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAV--RLALQYSPQVLIEQYIPGQ 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+T ++ L EI DFY YE KY+ S H++P + D+ K A+ A Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+G G+ R+D DP + + LE+N PGMT S+ PE A AG F +L+ +++ Sbjct: 241 RAVGSTGLVRADVRVDPE-GRPWVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIIDR 299 Query: 296 A 296 + Sbjct: 300 S 300 >gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 309 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 155/304 (50%), Gaps = 13/304 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VLMGG S EREVSL SGKA L+DAG++V +D + PD+ F LHG Sbjct: 6 VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDK--------MRSKQVVSSCGVPVCPSILVN 114 GEDG VQ LELL IPYT SG+LASA+ M+K + Sbjct: 66 GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFNRDL 125 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 P V+KP GSS+G +++K ++I L + + +++L+E+++ G Sbjct: 126 FNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPAL--ELALSLDEEILVEKFIAG 183 Query: 175 IELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V + VPK+++Y YE KY S H++PA+I + + V+ ++ Sbjct: 184 TELTVTVLGKDNLKTLPVIEIVPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEISC 243 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ A+GCRG R D + D + LEIN PGMT S+ P+ A AG F ELL Sbjct: 244 KAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLDLF 302 Query: 293 VEDA 296 V+ A Sbjct: 303 VKMA 306 >gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 303 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG SSEREVSL SG +A+E G + +D +L K D F LHG Sbjct: 3 IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLDPRYIDLSMLGFYKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115 GE G VQ++L++L+IPY SG+LASA+S++K+++K++ + G+ P + + Sbjct: 63 GMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQV 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 M ++ P V+KPL G S+G+ + + L +++ + ++L+EQ++ G Sbjct: 123 DIMALCSELTFPVVVKPLNQGCSIGVAKADNEVQLWDAL--LAAFEYDTEVLVEQFIVGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ +L V +I +F+ + K+ + ++T+ P+ + + +Q A+ Sbjct: 181 EYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 QA+GCRG R D L + V+ +E+N PGMT S+FP AA G S+ L+ +++ Sbjct: 239 QALGCRGWGRIDVLLTEHND-VYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLDH 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10] Length = 303 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + I + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP + GSS+G+ + + D+ + + +++++Y+ G E+T Sbjct: 122 --SPLGYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLPQY--GSVIVQEYIPGREMTV 177 Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ PK FY Y KY+ + +LPA + + V+ A A Sbjct: 178 SILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAFV 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D +F + + ++LEIN PG+T S P A G F EL+ +++ A Sbjct: 238 EAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295 >gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct] Length = 331 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S EREVSL SGKA +L G+ +D + + L LKPD F LH Sbjct: 32 IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G V A+LE+LEI +T S + +S ++MDKM SK+++ +P + Sbjct: 92 GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 150 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++ IS P +KP GGSS+ +K Q + ++S + +++IEQ+V G E+T Sbjct: 151 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 207 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D P+++FY YE K S S + P+ + EV++LA A+ +G Sbjct: 208 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 265 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G +R DF++D + +EIN PGMT S+ P+ AA G F + ++E A Sbjct: 266 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321 >gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 315 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + ++ + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + I PYV+KP+ GSS+G+ +I + SS+ +++++E+Y+ GIEL Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKNNSSTIM--EKMIVEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 183 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299 >gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360] gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313] Length = 376 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 153/357 (42%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 D +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC BAA-1200] Length = 303 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 151/298 (50%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER+VSL SG+A +AL + G D + L D AFN+LHG Sbjct: 7 VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LE L I YT G+LASA+ MDK R K + G+PV ++ + Sbjct: 67 IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPVPDYEVLREDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ IK+ + + + +I + G Sbjct: 127 AVERKLGLPLFVKPANEGSSVGVVKIKEKGRLKNVYRELRQYKGE---IIAEKFIGGGEY 183 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +P ++FY E KY ++ ++ P+ + K+++ L A AI Sbjct: 184 TCAILGGEALPSVRIIPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRAFDAI 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG R DFL D + +++ LE N PGMT S+ P+ AA AG F +L L +++ A Sbjct: 244 GGRGWGRIDFLKD-KNGRLYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQTA 300 >gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20] Length = 376 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 92/357 (25%), Positives = 152/357 (42%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDAPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1] Length = 353 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 100/333 (30%), Positives = 162/333 (48%), Gaps = 39/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKP-------- 51 +AVL GG S E EVSL S + L D G ++V + + R L ++ Sbjct: 6 IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F VLHG +GEDG VQ +LEL IPY +G+ SA+ MDK+ Sbjct: 66 GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125 Query: 95 RSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIK 145 K + + G+PV P + + ++ P +KP GSS+GI Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGISKAY 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + ++ + ++L+E+ + G E+ C V+G+ + + +P +DFY Y Sbjct: 186 DSAQLEKAINEAL--QYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEIIPCNDFYDYS 243 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY NS +PAK+ + K+V+ +A A+ C G+ R DF D + +++ +EIN Sbjct: 244 AKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEIN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P++ +G SF ELL +V+ A Sbjct: 304 TLPGFTSISMYPKLWEASGISFNELLQKLVKLA 336 >gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405] Length = 376 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 153/357 (42%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE EVS S + + F VS I + + + Sbjct: 9 VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68 Query: 46 -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70 K D+ F VLHG GEDG +Q Sbjct: 69 ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121 + EL IPY G+LASA+ MDK+ +K + G+P + R + + Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 S P +KP GSS+G+ + L+ ++ + ++LIE++++G E+ C V Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 D +P ++FY Y+ KY S +PA +P + ++++ A A +A+ Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFKALD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF + KV+ EIN PG T +S++P + +G S+ EL+ +++ A Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1] gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1] Length = 303 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V + I + F Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP + GSS+G+ + + D+ L + +++++Y+ G E+T Sbjct: 122 --SPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRY--GSVIVQKYIPGREMTV 177 Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ PK FY Y KY+ + +LPA + + V+ A A Sbjct: 178 SILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAFV 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D +F + + ++LEIN PG+T S P A G F EL+ +++ A Sbjct: 238 EAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295 >gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM] Length = 305 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 175/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GGIS EREVSL+SGK ALE+ G +V ID L L+ D+ + LHG Sbjct: 3 VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ++LE+ +PYT SG+LASAL+MDK R+K + ++ G+ + +L+ Sbjct: 63 KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122 Query: 121 Q----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP + GSS G+ + + + + ++ + +L+EQY+ G E Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNGLTIAMDEAMLREGIDKAFAC--DTAVLVEQYIKGRE 180 Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 LT V+G+ + +PK++FY YE KYS S HV PA++P + +EVQ A Sbjct: 181 LTVPVLGNHGAEAALPVIEIIPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAIK 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+GC G SRSDFL + LE N PGMTP+S+FP+ A G S+ ELL + Sbjct: 241 AHRALGCSGYSRSDFLISE-DGLAYILETNTLPGMTPLSLFPDSARAVGISYGELLERFI 299 Query: 294 EDA 296 E A Sbjct: 300 ELA 302 >gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102] Length = 304 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV +++ + Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1] Length = 307 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 148/296 (50%), Gaps = 12/296 (4%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 VLMGG S+EREVSL SG A AL AG ID+ ++ +A D AF LHG Sbjct: 15 GVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGT 74 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG VQ +LE++ IPYT S ++ASAL M+K KQV+ G+ I + + Sbjct: 75 LGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRIEVTGPE-- 132 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 P +KP+ GSS+G+ I Q Q+ + + E V+G+E+ V Sbjct: 133 ---RYPVFVKPVAEGSSVGLHRISSQQE-----WQALNIQSPAAWMAEMPVNGVEIAVSV 184 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + +L PKS Y Y KY+ + + PA++P++ + A A A GC Sbjct: 185 LAGVALMPV-EVAPKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G R D + + LEIN PGMT S+ P+ AA AG F+ L L ++E AS Sbjct: 244 GAPRVDMIV-GSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298 >gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 304 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LEL+ IPYT SG+ ASAL MDK R K + + G+PV +++ + Sbjct: 67 TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 317 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + ++ + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + I PYV+KP+ GSS+G+ +I + SS+ +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKNNSSTIM--EKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L] Length = 300 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 143/299 (47%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+SSEREVSL+SGKA L+ + V +D + DLA LHG Sbjct: 4 IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117 FGEDG +QA+LE + I Y+ L S + MDK +K + GV +V Sbjct: 64 KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P IKP GGSS+ ++K + + ++ + D ++IE+Y+ GIE Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAV--IEAFKYDDIVMIEEYIKGIEH 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ +F+ YE KYS+ N ++ + K ++ + Sbjct: 182 TSFILNGEVFPTI-RITSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CRG R+D++ +V+ LEIN PGMT S+ P+ A G + LL ++E A Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298 >gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi] Length = 317 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + ++ + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + I PYV+KP+ GSS+G+ +I + SS+ +++++E+Y+ GIEL Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKDNSSTIM--EKMIVEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D ++ PK+ FY YE KY+ + H+ PAKIP +IYK A HQ +G Sbjct: 185 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296 C+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED+ Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301 >gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069] Length = 312 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 167/306 (54%), Gaps = 9/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+E+E+SL SGKA +AL + G ID + + D +N LHG Sbjct: 9 VVVLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++QA L+LL +PYT SG++ASA++MDK+R+K + + PV ++N + Sbjct: 69 RGGEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTI 128 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ ++KP++ GSS+G+ +++ + + + ++++EQ++DG Sbjct: 129 EQAEDVLADMNDCVMVKPIREGSSVGMAKADNAKALVEAVENAK--QYDREVMLEQWIDG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L + P + Y ++ KY S ++ +V P+ + + E+ L+ A Sbjct: 187 EEYTVSILNGKALPSIRVKTPNTF-YDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G R D + + + LE+N PGMT S+ P+ A +G SF EL++ ++E Sbjct: 246 FYALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305 Query: 295 DASCLR 300 + R Sbjct: 306 TSFVER 311 >gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578] Length = 364 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 101/339 (29%), Positives = 161/339 (47%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVS S A L+ F+V + + L Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V R ++ + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + ++ + ++ + +++IEQ ++ E+ CGV G+ + + Sbjct: 189 GISKVHDERGLKKA--CELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEIIHTH 246 Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY YE KY +PA++ + + V+ +A A++A+ C G +R DFL D + Sbjct: 247 EFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETEV 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 307 FYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIEL 345 >gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas maltophilia K279a] Length = 320 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 115/298 (38%), Positives = 167/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D + LA D FN+LHG Sbjct: 20 VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ + Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L VPK +Y Y KY + ++ ++ P D + ++R+A A +A Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGGDEEE-IRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ A AG SF EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLEQ 313 >gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 365 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 51/348 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG S E EVSL S + +AL+ F+V I + ++ + Sbjct: 6 VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65 Query: 46 ----------------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L L P DL F VLHG FGEDG VQ L+L IPY S Sbjct: 66 QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+L S+L+MDK+ K+++ G+ V R + + +S P +KP Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPIFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI +K + + + + + + L E+++ G E+ + V Sbjct: 186 NLGSSVGISKVKNREELIQGIDLAV--KYDMKCLAEEFIPGKEIELSILGNDNPKTSVPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P ++FY Y KY + S V+PA + + +++ + A + + C G+SR D+ Sbjct: 244 EIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDYFVL 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V+ EIN PG T +S++P++ +G S+ +LL ++ A Sbjct: 304 EDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALAR 351 >gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia solanacearum CMR15] Length = 331 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 151/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ++DG ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIDGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + PA IP D VQ L A+ Sbjct: 198 CAVIGEGEHATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADAAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 258 RSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000] gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine synthetase)(d-ala-d-ala ligase) protein [Ralstonia solanacearum GMI1000] Length = 331 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 151/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ERE+SL SG +AL G D LA LHG Sbjct: 20 VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 FGEDG +Q +LE IPYT SG+LASAL+MDK +K++ + +P ++++ Sbjct: 80 RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + +P +++ ++ EQ++DG ELT Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIDGDELT 197 Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ + PA IP + VQ L A+ Sbjct: 198 CAVIGEGEHATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQAY 257 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +++GCRG R+D + F LE+N PGMT S+ P A G S+ + +L + Sbjct: 258 RSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317 Query: 296 AS 297 AS Sbjct: 318 AS 319 >gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10] gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10] Length = 376 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVS S ++ ++ + V I + +S + Sbjct: 6 VAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNGDWE 65 Query: 46 -LAHLKP--------------------------------DLAFNVLHGNFGEDGLVQAIL 72 +A KP D+ F VLHG GEDG +Q + Sbjct: 66 AIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLF 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 EL IPY G+L SA+ MDK +K + G+P ++ NR + + + Sbjct: 126 ELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGR 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181 ++ P +KP GSS+G+ +S+ L ++ + ++L+E++++G E+ C V Sbjct: 186 LTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAA--KNDRRILVEEFINGREIECAVLG 243 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + VP +DFY YE KY + + + + ++++ A A + + Sbjct: 244 NDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR DF + +++ EIN PG T +S++P++ A +G + EL+ ++E A Sbjct: 304 CAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 >gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001] Length = 313 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 143/295 (48%), Gaps = 9/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + + +++E+ ++G Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--VEAVKYDRIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + ++ LA A Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 313 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 6/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+++ER+VSL SG AL+ G DV LV K D AF LHG Sbjct: 18 VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K + G+P I+V+ Sbjct: 78 RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ P ++KP GSS+G+ + ++ + + + ++LIEQ++ G E T Sbjct: 138 VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAV--DFAQQYDSEILIEQWITGREFT 195 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+ +L + ++ Y ++ KY S + ++ P + + K +Q L A A+ Sbjct: 196 CAVLDGEALPMIQLKTDHDF-YDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQAFDAV 254 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G R R D + D + + +EIN PGMT S+ P A SF +L+L ++ Sbjct: 255 GARHWGRVDLMLDDQ-NQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLI 308 >gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H] Length = 317 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 162/302 (53%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+A A LEDAGF V ID L K D F LHG Sbjct: 17 IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q LE L+IPYT S +L S+LSMDK+RSKQ+ +CG+P P +VN+ Sbjct: 77 RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136 Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + ++KP GSS+G+ K + L ++ Q+L+E ++DG Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNAL--IEAFGFDTQVLLEAWIDG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD +L + P+ Y YE KY S ++ + P + E++ L+ A Sbjct: 195 PEYTVTILGDKALPAIHMETPREF-YDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A G +G R D + + + LE+N PGMT S+ P+ A G +F EL+ +++ Sbjct: 254 FNATGAQGWGRVD-IMRNKTGEWQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQILQ 312 Query: 295 DA 296 + Sbjct: 313 LS 314 >gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 362 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 50/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E EVS S + + ++ ++V + + + L Sbjct: 6 VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG VQ ++ELLE+PY Sbjct: 66 KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130 +L+S+L MDK+ SK++ G+P +V R ++ I P + Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + L ++ ++ + IE + + V Sbjct: 186 KPANMGSSVGISKVHNEGELIDALKIAAKYDRKIIVEEGIDAREIECSVLGNDNPEASVA 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FY Y+ KY S +PA IP +E++ LA A+ A+ RG++R DFL Sbjct: 246 GEIVPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVDFLM 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + KV+ E+N PG T +S++P++ +G + EL+ +++ A Sbjct: 306 DKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELIDELIQLA 351 >gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256] Length = 304 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 364 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ EIN PG T +S++P++ ++ + +L+ ++ A Sbjct: 306 TNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348 >gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400] Length = 313 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + +++E+ ++G Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKFDRIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + D ++ LA A Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307 >gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685] Length = 319 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L + AFN+LHG Sbjct: 22 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 82 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 141 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 142 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 199 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 200 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 258 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 259 IGAEGCVRVDFLRDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCIEILKTA 316 >gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 364 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 159/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG+S+E E+S+ S K+ ++ +++ I + + +L K Sbjct: 6 VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133 G+L+SA+ MDK +K++ G+P ++V F + S P +KP Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI K + + L + ++ ++ + IE + + Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +FYSYE KY +S ++PA++P ++ +E++ LA ++ C G++R DF D Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVDKD 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV++ E+N PG T +S++P++ ++ + +L+ ++ A Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348 >gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114] Length = 304 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV ++++ + Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFVVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DFL D K++ LEIN PGMT S+ P+ A + G F +L + +++ A Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADLCIEILKTA 301 >gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 315 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 174/303 (57%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L+GGIS EREVSL+SG+ AL +AGF+V+ +D D+ L D+AF LH Sbjct: 12 VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE++ +PY SG+ +SAL+MDK++SK + G+ PSI + Sbjct: 72 GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131 Query: 120 SQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I V+K GS+LG+ +++ +I + ++ +++L+E+Y+ G Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAIEKAR--ELDNEILVERYIKGK 189 Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V+G+ + VP +DFY YE KY S H+ PA + + +++Q +A Sbjct: 190 ELTVAVIGNDNPRALPIIEIVPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAVQ 249 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+ C G+SRSDF+ D + LE N PGMT S+ P+ A AG SF EL ++ Sbjct: 250 AHKALECAGVSRSDFILDDE-GDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTMLI 308 Query: 294 EDA 296 E A Sbjct: 309 EFA 311 >gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824] gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824] gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018] Length = 343 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 155/334 (46%), Gaps = 37/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + + I + + Sbjct: 5 VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +L+ +P +L+S++ MD Sbjct: 65 KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + ++V+ ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + L ++ ++ + IE+ + + VP +FY YE Sbjct: 185 AHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEPKAAIPGEIVPAKEFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY + S ++PA + + ++++ +A ++A+ C G+SR DFL D + +++ E+N Sbjct: 245 AKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLNEVN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 PG T +S++P++ A AG + +L+ ++E A+ Sbjct: 305 TIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338 >gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996] Length = 304 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA+ G F +L + +++ A Sbjct: 244 IGADGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301 >gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052] Length = 301 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 168/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ + ++V I +D+ ++ D A LHG Sbjct: 3 IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK V+ + G+ P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I+ P V+KP GGSS+ ++K+++ I + ++ W +++IE+++ G E+ Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIENCVSEAFKW--DSEVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + L V PK++F+ + KY + ++ ++ +++KEV+++A ++A Sbjct: 181 TCPVYNNKMLPVI-AIKPKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LEIN PGMT S+ P+ AA F EL+ +++D+ Sbjct: 239 LKCEVYSRVDMIVTEE-GVPYILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296 >gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925] gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium botulinum BKT015925] Length = 343 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 37/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDNIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL+IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + G+ ++V ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + L ++ ++ + IE+ + VP ++FY YE Sbjct: 185 AHNREELEKGLSEALKFDRKVLVETALNAREIEVAVLGNDEPEAATPGEIVPANEFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KYS+ S +LPA + ++V+ LA ++ + C G+SR DFL D + +V+ EIN Sbjct: 245 AKYSNAESKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P+M G S+ L+ ++E A Sbjct: 305 TIPGFTKISMYPKMWQAEGKSYGNLISEIIELA 337 >gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8] gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8] gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2] Length = 303 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 148/300 (49%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 3 VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAIL+ L I YT S +S + DK+ + + + V V Sbjct: 63 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKG---TVEIPDFVEIKEFM 119 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P V+KP + GSS+G+ V + D+ L + +++++Y+ G E+T Sbjct: 120 KTSPLGYPCVVKPRREGSSIGVFVCESDEEFQHALKEDLPRY--GSVIVQKYIPGREMTV 177 Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ PK FY Y KY+ + +LPA + + V+ +A A Sbjct: 178 SILETEKGFEILPVLELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKEMALKAFV 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R D +F + ++LEIN PG+T S P A G F EL+ +++ A Sbjct: 238 EAGCRGFGRVDGIF--SDGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295 >gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 310 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 120/299 (40%), Positives = 176/299 (58%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL+SG A AL GF +DV R + LVL+ AF LHG Sbjct: 9 IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ S G+ P R S Sbjct: 69 RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P V+KP++ GSS+GI ++K++ + + ++ H D++L+EQ++ G E+ Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVKEESQLAAAV--KLAFRHDDEILVEQFIKGQEVQ 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++ D + V +++FY +E KY+ + H PA++ +Y+E R+ AH A+ Sbjct: 187 VGILDDRPMGAI-EIVSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 GCR SR D L P + + LE+N PGMT +S+ PE A A F EL+ ++ A Sbjct: 246 GCRCYSRVDLLVTPA-GECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERIILSA 303 >gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155] Length = 1029 Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSER +SL S +A A AL D G +V++ID+ ++ DL F VLHG Sbjct: 732 IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISK-DIDLVFPVLHG 790 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ++E PY I +S L +DK + + + G+PVC S+++ + Sbjct: 791 EFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEEI 850 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I+ P V+KP + GSS+ + +++K+ + + + + D +L+E + GIE T G Sbjct: 851 SQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDLAF--ENDDTVLVESFFKGIECTVG 908 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ +L +P F+ Y+ KY+ + P +IP D+ + +++ + + Sbjct: 909 LIDGKAL-SVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKV 967 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + R + R D +++P S K LE N PG T S+ P+ A G SF EL + + A Sbjct: 968 LKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKA 1026 >gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN] gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN] Length = 313 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 95/295 (32%), Positives = 144/295 (48%), Gaps = 9/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + + +++E+ V+G Sbjct: 132 ARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDKIVVVEKSVEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + D ++ LA A Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS] Length = 290 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 6/294 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S+EREVSL SG+A +AL ID ++ L D AF LHG GE Sbjct: 1 MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQH 122 DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+ G+P S + + Sbjct: 61 DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDSDFNSIIE 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++KP GSS+GI +K + + +S ++ ++ E Y+ G E T ++ Sbjct: 121 KLGLPLMVKPSLEGSSVGITKVKNVDELASAVETASQFHCD--IIAEHYISGTEYTAAIL 178 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D +L + + P+ Y + KY+ ++++ P +P +E+Q +A A ++G +G Sbjct: 179 HDTALPLIRLETPREF-YDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAKG 237 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D S K + +EIN+ PGMT S+ P A AG SF EL+L ++ A Sbjct: 238 WGRVDFLCDETS-KPWLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290 >gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] Length = 364 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 102/339 (30%), Positives = 162/339 (47%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVS S A L+ F+V + + + L Sbjct: 9 IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L+ D F ++HG FGEDG +Q +LE + Y +G+L S Sbjct: 69 EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSL 139 AL MDK R+K V G+P+ P ++V R ++ + + P +KP +GGSS+ Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + ++ + ++ + +++IEQ ++ E+ CGV G+ + + Sbjct: 189 GISKVHDERGLKKA--CELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEIIHTH 246 Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY YE KY +PA++ + + V+ LA A++A+ C G +R DFL D + Sbjct: 247 EFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETEV 306 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + EIN PG TPVS+FP MA AG SF +LL ++E Sbjct: 307 FYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIEL 345 >gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1] Length = 316 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S+EREVSL++GKA AL + G+ ID+D L FN +H Sbjct: 6 IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPPRFLEQLRENGVTFVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q L+LL IPYT SG+LASAL+MDK SK++ + G+P + + + Sbjct: 66 GKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIPTPRAEIYTKADAK 125 Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 P V+K GSS+G+++++++ + ++++ + D +++E ++ Sbjct: 126 RNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVEAF--RYSDCIVVENFIK 183 Query: 174 GIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELT + + VP S Y Y KY+ + +++PA+I + + V+++A Sbjct: 184 GKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVRQVA 243 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GCRG++R D + D + LE+N PGMT S+ P+ AA AG SF +L Sbjct: 244 VAAFNLLGCRGVARVDIMLD-DDNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADLCER 302 Query: 292 MVEDA 296 ++ A Sbjct: 303 ILLIA 307 >gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1] gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1] Length = 316 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 157/317 (49%), Gaps = 23/317 (7%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG 60 VL+GGIS ERE+S+ SGK A AL + G V +IDVD + L+ LK D FN+LHG Sbjct: 4 GVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------------CGVP 106 FGEDG +QAIL+ + IPYT SG+ S ++ DK V + + Sbjct: 64 TFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLL 123 Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + + I P V+KP K GSS+G + + + L D++ Sbjct: 124 ISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNY--DEM 181 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++++Y+ G E+T V+ PK FY YE KY+ + ++PA++ + Sbjct: 182 IVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDGET 241 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 +++ ++++GC+ SR D + ++LE+N PGMT +S P A G Sbjct: 242 TEKINHAVLKIYKSLGCKHFSRIDGIV--KDGVFYFLEVNTLPGMTELSDLPMSANAFGI 299 Query: 284 SFRELLLWMVEDASCLR 300 SF EL+ ++++A C + Sbjct: 300 SFDELVDLIIKEA-CRK 315 >gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont] Length = 306 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L++PYT SG++ASA++MDK+RSK + G+P + + R + Sbjct: 65 RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + + +++P L ++ H D +L+E + Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAAL--QEAFRHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L S+FY YE KY S ++ + P+ + + E+Q L Sbjct: 183 LSGAEYTVGIVGDEILPSI-RIQTASEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GC G R D + D LE+N PGMT S+ P A AGYSF +L+ Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1] Length = 313 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + +++E+ ++G Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKFDRIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + D ++ LA A Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307 >gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 313 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 9/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + + +++E+ ++G Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDRIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + + ++ LA A Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 250 FDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund] Length = 343 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 37/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G++ASA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 Q + L ++ ++ + + IE+ + VP ++FY YE Sbjct: 185 AHNRQELESGLEEALKFDRKVLVEVALNAREIEVAVLGNDEPMAATPGEIVPANEFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KYS+ S +LPA + L+ ++V+ LA + + C G+SR DFL D + +V+ EIN Sbjct: 245 AKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P+M G ++ EL+ ++E A Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337 >gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 306 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G ID L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R + Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS+GI + ++P L ++ + + +L+E + Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L S+FY YE KY S ++ +V PA++ + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSI-EIKSASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D + LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGE-GRFQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4] gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4] Length = 316 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG A AL G IDV V L+ + + AF LHG Sbjct: 13 VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG++Q LE L +PYT SG+L SAL+MDK+RSKQ+ G+P + Sbjct: 73 RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGTDLA 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSSLG+ + +++ + ++ EQ++ G E T Sbjct: 133 LVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAY--REAMAFDGTVIAEQWLPGAEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ +L + + P FY +E KY + + ++ P + + + +Q LA A QA+ Sbjct: 191 AAILTGRALPLIGLETP-RIFYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQAL 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF D + + LE+N PGMT S+ P A AG F +L+L ++E + Sbjct: 250 GASGWGRVDFRCDAQA-RPCLLEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILESS 306 >gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8] Length = 325 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 156/297 (52%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV MGG S+EREVSL SGKA +AL+ AG D+ + + D F LHG Sbjct: 25 VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118 GEDG +QAIL IPYT S +LASAL+MDK+R+K V CG+P + Sbjct: 85 RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAE 144 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G + K + + L ++ D +L+EQ+++G E T Sbjct: 145 GIVAALGTPLSVKPAHEGSSIG--IRKVNSAAELAEAYEAAARLDDLVLVEQWIEGPEFT 202 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L ++ + Y Y+ KY + ++ + +P + D +Q LA A + + Sbjct: 203 VSLLQDKALPAIGLSTDHAF-YDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRVL 261 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCR R D + D + + LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 262 GCRTWGRVDIMQDRA-GEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317 >gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164] Length = 311 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 166/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P++IKP+ GSS+G+ ++K + P L +++ H ++ E++++G E T Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKAT--EHDAVVMAEKWINGREFT 185 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ +L V + PK FY YE KY+ + + +P + K +Q LA A QA Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC+G R D + D + LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302 >gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34] gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34] Length = 327 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 158/304 (51%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASAL+MDK +K++ + G+ ++ T Sbjct: 77 RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLYANTDFD 136 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + +++ + ++ E ++DG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDAD--VIAETFIDGAELT 194 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ V Y Y+ KY + ++ ++ P+ +P + +EV+ LA A Sbjct: 195 CPIVGEGPTAEALPVIKIVAPESNYDYQNKYFTDDTQYLCPSTLPDALEREVRALAVEAF 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + K + LE+N PGMT S+ P A G S+ + ++ ++ Sbjct: 255 RVLGCRGWARADVMLT-RDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVMQVLAA 313 Query: 296 ASCL 299 A+ Sbjct: 314 ATLD 317 >gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii] gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 332 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSEREVSL +G+A +L +G+ IDV + L ++ F LHG Sbjct: 17 IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +Q LE L IPYT SG+ ASA+ M K+ +K +++ G+PV +V R Sbjct: 77 PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136 Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S + P V+KP GS++G+ +++K L ++ + ++ ++E ++ G Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEAL--RTAHRYDEEAMVEAFIPG 194 Query: 175 IELTCG----VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T G + V FY + KY + ++ PA + + +++++ Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAPDGFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQF 254 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +QA+GC G +R DF P K F LEIN PGMT S+ P A AG S+ L Sbjct: 255 AIRTYQALGCSGAARVDFRVTPK-GKPFVLEINTVPGMTETSLLPMAAGKAGLSYDALTE 313 Query: 291 WMVEDA 296 +++ A Sbjct: 314 RILQSA 319 >gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801] gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801] Length = 351 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVSL+S KA A+AL+ + + I + ++ VL Sbjct: 6 VGLLFGGRSGEHEVSLNSAKAIATALQSGENPQKYDIIPIYIQKNGVWQAGDTAQQVLND 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L S Sbjct: 66 AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKG 135 A+ MDK+ K + G+P I V+R + + + P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ + +E + V Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDRRIVIETGVKAREVECAVLGNENPKASVIGEITY 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + S+ Sbjct: 246 NSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVEDSQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +VF EIN PG T S++P++ G F EL+ +++ A Sbjct: 306 EVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLA 346 >gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873] Length = 343 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 37/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + G+ ++V ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + L ++ ++ + IE+ + VP ++FY YE Sbjct: 185 AHNREELEKGLSEALKFDRKILVETALNAREIEVAVLGNDEPKAATPGEIVPANEFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KYS+ S +LPA + + ++V+ LA ++ + C G+SR DFL D + +V+ EIN Sbjct: 245 AKYSNAESKLLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P+M G ++ +L+ ++E A Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGDLISEIIELA 337 >gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599] Length = 334 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 7/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG SSER VSL SG+ AL+ G D L D AF LHG Sbjct: 22 VVVLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLGDLEKAGYDRAFIALHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+ + +P P + Sbjct: 82 RYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLA 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP GS+LG+ + +P +++ +L E++V G ELT Sbjct: 142 GLAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAADI--DFPVLAERFVQGRELT 199 Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+G + Y Y KY + ++ ++ PA + + ++ LA A+ Sbjct: 200 VAVIGSGAAARALPIVEIRAPNGNYDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAAY 259 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+GC G R D + D +++ + LE+N PGMT S+ P A AG S+ +L+L + Sbjct: 260 RAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTAQ 319 Query: 296 AS 297 AS Sbjct: 320 AS 321 >gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 312 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 + VL GG S+EREVSL SG+A AL AG+ V +IDV + L + +AF LH Sbjct: 5 IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++ G+P ++ + ++ Sbjct: 65 GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124 Query: 120 SQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P V+K GS++GI + + + + + ++ + Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKMAEAIESALKYDQDVLVEQF 184 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + + Y Y+ KY+ S H++P ++P DI ++++ Sbjct: 185 VAGTEVTASVLGNNSPEALPLIEITSVTGVYDYQSKYTPGMSDHIIPPRLPQDIQEKIKE 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA + ++GCRG+ R DF+ + + LE+N PGMT S+FP+ A YAG SF EL Sbjct: 245 LAIKSFLSLGCRGLGRIDFII--RDNQPYALEVNTLPGMTATSLFPDAANYAGISFPELT 302 Query: 290 LWMVEDA 296 +++ A Sbjct: 303 DRLIKLA 309 >gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160] Length = 313 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 9/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKEEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++P L + + +++E+ ++G Sbjct: 132 ARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDRIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + + ++ LA A Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +GC R+DF+ D K ++LE+N PGMT S+ P+ A G S++EL+ Sbjct: 250 FDVLGCTDWGRADFMLDGE-GKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303 >gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 298 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSER VSL SG+ L ++V I +D +V D AF LHG Sbjct: 3 VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE LEIPY+ +L SA+ M+K +K ++ + + P I V Sbjct: 63 KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I P IKP GGSS+ +K + + + + +++IE+Y+ G E+ Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAV--KEGLKYDTEVMIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ I S F+ Y KY + + + + +V ++ Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDDNGAEENV-VYLKEQLQSQVAEISKKIWDL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + CR SR D + + + LE+N PG+TP S+ P+ A G F ELL +++ Sbjct: 240 LYCRSYSRVDMII--SNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELLDKIIK 294 >gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 337 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 21/317 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SG+A AL+ + +IDVD ++ L + P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S + ++ + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + I PYV+KP+ GSS+G+ ++ + ++ + Y+D E Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184 Query: 180 GVMGDASLDV-------------------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 + D + T PK+ FY YE KY+ + H+ PA+IP Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIP 244 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA- 279 +IYK A HQ +GC+ ISRSDF ++P + + LEIN PG T +S+ PE+A Sbjct: 245 DNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKL 304 Query: 280 YAGYSFRELLLWMVEDA 296 G +F EL+ ++ED+ Sbjct: 305 AKGINFNELVKIIIEDS 321 >gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159] Length = 372 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 54/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +VSL S +A ++ F++ + + R ++ Sbjct: 7 VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F VLHG +GEDG +Q +LEL IPY Sbjct: 67 PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130 G+LASA++MDK +K++ +S G+ I QH + P + Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLD 188 KP GSS+G+ ++ + + + +S + ++++E+ +D EL V + Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELAS--RYDRRIVVEEAIDARELEVSVLGNEEPVAS 244 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + VP +FY YE KY +S ++PA I + V+R+A A + I G++R DF Sbjct: 245 IVGEIVPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + ++ E+N PG T +S++P++ +G FR+L+ ++E A Sbjct: 305 FLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352 >gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 361 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 49/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E EVS S + + ++ + V + + + L Sbjct: 6 VAVLFGGQSGEHEVSRVSATSIINNIDRDKYDVYMVGITKKGEWYLYNGDIEKIATGEWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG VQ +LELLE+PY Sbjct: 66 KDAVPALIGPSTKYKGILAFKDSRYEFYPIDVVFPVLHGPNGEDGTVQGLLELLEMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLISPPYVIK 131 +L+S+L MDK+ SK++ G+P + I P +K Sbjct: 126 PNVLSSSLCMDKVFSKRIFLEAGIPTPKFTVVYRKELNNVDNYEEIRRRVSEIGYPCFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + + L +S ++ + IE + + + Sbjct: 186 PANMGSSVGITKVHNENELMDGLKLASKYDRKIIIEEGIDAREIECSVLGNDNPEASIAG 245 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VP +FY Y+ KY S +PA IP +E++ LA A+ A+ RG++R DFL D Sbjct: 246 EIVPAHEFYDYDAKYFDEASKLFIPAPIPDVKMEEIRELAIKAYIALDVRGMARVDFLMD 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV+ E+N PG T +S++P++ +G + +L+ +++ A Sbjct: 306 KNTGKVYLNELNTIPGFTKISMYPKLWEASGKPYSKLIDDLIQLA 350 >gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 306 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 5/296 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+SSERE+S+ SGKA + + V IDV+RS+ + K D+A+ LHG Sbjct: 15 IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L IPYT SGI ASA S+DK SK++ + ++ +F Sbjct: 75 PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGTVP 134 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V+KP+ GS++G+ ++K+ + + +GD+ LIEQ+++G E+T G Sbjct: 135 EIK-KYPVVVKPVSQGSTIGVAIVKRPSEFAAAV--KEVFKYGDEALIEQFIEGKEVTVG 191 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ + VPK FY ++ KY S H++PA I + Y+ VQ A ++ C Sbjct: 192 VLNGKA-LPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R I R D + D +V+ E N PGMT S+ P+ + GYSF L+L + E A Sbjct: 251 RAICRVDMIVDRKD-RVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305 >gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118] Length = 346 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 156/304 (51%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG+ AL G D L F LHG Sbjct: 29 VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALHG 88 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG++AS++++DK+ +K++ S G+P V+ S Sbjct: 89 RFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSAAATS 148 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + + + ++ H +L EQ+V G E+T Sbjct: 149 EAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAA--RHDAMVLCEQFVKGDEVT 206 Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 A V Y Y+ KY + + +++PA +P +Q+LA A+ Sbjct: 207 IPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTDTTQYLVPANLPAGEEAHIQQLALKAY 266 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +GCRG +R D + D +R F LEIN PGMTP S+ P A AG S+ L L ++ Sbjct: 267 QVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLRH 326 Query: 296 ASCL 299 A+ Sbjct: 327 ATLD 330 >gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 302 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 177/299 (59%), Gaps = 5/299 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG +SE VS S C A AG+ +++VDR + LA +KPD FN LHG Sbjct: 8 VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V ++ + T Sbjct: 68 QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +VIKPL GSS G++++K P S WN QLL E ++ G ELT Sbjct: 128 PEHAMQAHVIKPLNDGSSFGVVIVKDGDKAPA----RSLWNTDTQLLCEPFIPGRELTVA 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ +L ++ FY ++ KY+ S H+LPA IP D+ + A A++A GC Sbjct: 184 VLEGTALC-VTEITSENSFYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFGC 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 RG+ R+D+ ++ ++ ++F LEIN QPGMT S+ PE A + G + EL+ ++E A C Sbjct: 243 RGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQCD 301 >gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens NRL30031/H210] Length = 304 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSEREVSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q LEL+ IPYT SG+ ASAL MDK R K + + G+PV +++ + Sbjct: 67 TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G SR DFL D + K++ LEIN PGMT S+ P+ A + G F +L + +++ A Sbjct: 244 IGADGCSRVDFLKD-MDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLCIEILKTA 301 >gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 293 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER VSL SG+A AL + + D L + D AF VLHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS +DK R+K + + + PSI+ + Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+++KP GSS+GI + + L +W + LIEQ+++G E T Sbjct: 122 PIDFPLPWMVKPTLEGSSIGISKVDSQIQLNNAL--MLAWQYNSHALIEQWIEGDEYTVA 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD + + FY YE KY S ++ P + + +Q +A A AI Sbjct: 180 ILGDKA-LPVVKIITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF+ + K + LEIN PGMT S+ P A G SF +L++ ++ + Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292 >gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424] gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus taiwanensis LMG 19424] Length = 327 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASAL+MDK +K++ + G+ +++ T Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLHADTDFD 136 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + + + ++ E +VDG ELT Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAF--DKAAALDNDVIAETFVDGAELT 194 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C V+G+ V Y Y+ KY + ++ ++ P+ + ++ ++VQ LA A+ Sbjct: 195 CPVVGEGDTAEALPVIRIVAPEANYDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQAY 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + F LE+N PGMT S+ P A G S+ + +L ++ Sbjct: 255 RVLGCRGWARADVML-RADGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVLAA 313 Query: 296 ASCL 299 A+ Sbjct: 314 ATLD 317 >gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 368 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EVSL S + A+ + ++ + + + L Sbjct: 6 VMVVFGGRSGEHEVSLMSATSVLRAMNKEKYNITTVGITKKGIWKLYRGSIDKIQSGEWE 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 K D+ F VLHG FGEDG +Q + E Sbjct: 66 GIADNWAKENNFSTNISVLPSEEGKGIINFGDGKTEKIDVVFPVLHGPFGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLI 124 ++ IPY +G+LAS+L+MDK SK++ G+P + Sbjct: 126 MMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAKYHAFLVKEYKENEKEVLDTIEEKF 185 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 + P +KP GSS+GI + + + + ++ + ++++E+ ++G E+ C V+G+ Sbjct: 186 TYPVFVKPANMGSSVGITKVHNREKLEKAIELAA--KYDRKIVVEEGINGREIECSVLGN 243 Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + +P ++FY Y KY + S +PA +P D+ + ++ L+ ++ + C G Sbjct: 244 DEPIASLPAEIIPSAEFYDYNDKYFAGTSKFEIPANLPEDVIEGIRSLSVKVYKLLDCSG 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR D + S ++ E+N PG T +S++P+M G + EL+ ++E A Sbjct: 304 LSRVDCFIERDSNRILLNEVNTMPGFTQISMYPKMWEATGIEYEELIDRLIELA 357 >gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 328 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 156/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A L +AG +D L F LHG Sbjct: 27 IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG +Q L L++PYT S +SALSMDK+++K S G+P+ P + + Sbjct: 87 RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSSLG+ + +P L ++ + +++LIE++ Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ +L I P FY Y+ KY S + + P+ + +++ LA Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+QA+GC G R D + D + + LE+N PGMT S+ P A G +F +L++ Sbjct: 264 KQAYQALGCSGWGRVDVMQDSDAN-FYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVVQ 322 Query: 292 MVEDA 296 ++ A Sbjct: 323 ILALA 327 >gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394] Length = 308 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SGKA AL+ G D L D+AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFDPAEMELSELKTQNFDMAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LE L IPYT G+LASAL MDK R K + S+ G+PV P +++ + + Sbjct: 67 TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDSDFA 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P IKP GSS+G++ IK+ + Q +L EQ++ G E T Sbjct: 127 AVEQKLGLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSGGEYT 186 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 CGV +L +P+++FY YE KY ++ ++ P+ + + + +Q LA A AI Sbjct: 187 CGVFNGKALPSIH-IIPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEAFAAI 245 Query: 239 GCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G + R DFL D ++ LE N PGMT S+ P+ A G SF +L + ++++A Sbjct: 246 GGGNTLGRIDFLKDSA-GCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVLQNAQ 304 Query: 298 CLR 300 R Sbjct: 305 DER 307 >gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2] Length = 308 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 158/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K +Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum 3TCK] Length = 304 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 167/301 (55%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ +A+E G + ID ++ K D F LHG Sbjct: 3 IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ Sbjct: 63 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 P V+KP+ G S+G+ + + + + +++ + D +LIE ++ G Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFIAGR 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ +L + +I F+ Y+ K+ S ++T+ P+ + + +++Q LA A+ Sbjct: 181 EYTCAVLNGEALPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALNAY 238 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG R D + D S VF +E+N PGMT S+FP A AG SF +++ +++ Sbjct: 239 NALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLLDS 297 Query: 296 A 296 A Sbjct: 298 A 298 >gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14] Length = 320 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 117/298 (39%), Positives = 169/298 (56%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ VLA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V+ T+ Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139 Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HVLAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L VPK +Y Y KY + ++ ++ P D + ++R+A A +A Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGADEDE-IRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ AA AG F EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLEQ 313 >gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7] Length = 300 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG++QA+LE ++IPY+ G L S + MDK +K+++ S G+ + V Sbjct: 63 KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+ +IKK Q I + + ++ +++IE+Y+ G E+ Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAV--RLALDYDTEVMIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC +M + PK++F+ Y KY+ S ++ + + +++ +A + Sbjct: 181 TCCIMNG-KVLPIIAIKPKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A S+ +LL + E Sbjct: 239 LKCSVYVRVDMII--KEGVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293 >gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 315 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 162/297 (54%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG +AL + G +D R L D F VLHG Sbjct: 20 VAVLFGGASAERDVSLKSGGQVLAALRNVGVDCFHVDP-RDGLQPLLDGDFDRVFIVLHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L LL PYT S +LASAL+MDK+R+KQ+ + G+P +++ + Sbjct: 79 RGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPTPKYAVLDAGSDWE 138 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P ++KP+ GSS+G+ + + + L+++ ++ EQ++ G E Sbjct: 139 AIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAA--KFDSVVIAEQWITGAE 196 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++G+ +L ++ FY YE KY ++ ++LP +P D E++ LA A++ Sbjct: 197 YTVSILGEDALPAIKLET-DRQFYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRAYR 255 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AIGC G R D + D + + LE+N PGMT S+ P A +G SF +L+L ++ Sbjct: 256 AIGCSGWGRVDIMCDAA-GQPWLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVLSIL 311 >gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745] Length = 375 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHL------ 49 + V+ GG S E +VSL S +A A++ F+V I + R + L L Sbjct: 10 VGVIFGGRSGEHDVSLRSAQAILRAIDRERFEVVPIGITREGRWLSGGDPLRQLAATSRL 69 Query: 50 -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72 + D+ F VLHG +GEDG VQ +L Sbjct: 70 ALAPGDDPPAEESDLGSALAVPETGHAVEVAGAGVVQQLDVVFPVLHGPYGEDGTVQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 EL ++PY +G+L SA+SMDK+ +KQ+ G+PV P + V R + + Sbjct: 130 ELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWLWVTRRQWERDPEGVAARVERE 189 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181 + P +KP GSS+G+ + +P + +++ + +L++E+ +D EL V Sbjct: 190 LGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAA--RYDRKLVVERGIDARELEVSVLG 247 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + V P ++FY Y+ KY S ++PA I + V+ +A A + + Sbjct: 248 NDEPITSVVGEIRPVNEFYDYQAKYVDEGSELLVPAPITQEQSDTVREMAVRAFKVVDAA 307 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + ++ EIN PG T +S++P + +G SFREL+ ++E A Sbjct: 308 GMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWEASGLSFRELVSRLIELA 362 >gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211] Length = 343 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 39/335 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44 +L GG S E EVSLSS + +AL F+V+ + + + Sbjct: 11 LLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAETG 70 Query: 45 -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 V D+ F +LHG GEDG VQ +L L IP+ SG+L SA SMDK +K Sbjct: 71 GDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAMTK 130 Query: 98 QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 QV+++ G+P P L+ R + + P +KP GSS+GI ++ + Sbjct: 131 QVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGEDE 190 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYSYELK 205 + L ++ H ++++E G +DFY YE K Sbjct: 191 LDGALREAF--AHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYETK 248 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y+ +T +PA +P + ++V+ A A +A+ C G++R DF ++ + +V+ E+N Sbjct: 249 YTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVNTM 308 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG TP S++P + A AG S+ +L+ +VE A+ R Sbjct: 309 PGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343 >gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514] gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561] gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513] gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 359 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 158/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ + + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL++PY Sbjct: 66 KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V + P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + ++ +P L ++ ++ + IE + + + V Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPEASIAGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y KY + + +PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFLMDRN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G S+ LL ++ A Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348 >gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1] Length = 306 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL+SG+A + L + G +D L L AF LHG Sbjct: 5 VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R D Sbjct: 65 RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS+GI + ++P L ++ H D +L+E + Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAAL--DMAFKHDDDVLVEAF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++GD L S+FY YE KY S ++ +V PA + + E+Q+L Sbjct: 183 LSGAEYTVAIVGDRILPSI-EIKSASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +A+GCRG R D + D + LE N PGMT S+ P A AG SF +L+ Sbjct: 242 LAAWRALGCRGWGRVDVMTDGE-GRFQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300 Query: 292 MVEDA 296 ++E A Sbjct: 301 ILELA 305 >gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16] gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16] Length = 327 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG S+ERE+SL SG +AL+ G D LA D F LHG Sbjct: 17 VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L +PYT SG+LASA++MDK +K++ + G+ +++ T Sbjct: 77 RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGLATPRFAMLHADTDFD 136 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP + GSS+G+ + + + + ++ E ++DG ELT Sbjct: 137 AVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAF--EKAAALDNDVIAETFIDGAELT 194 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 C ++G+ V Y Y+ KY + ++ ++ P+ + ++ +EV+ LA ++ Sbjct: 195 CPIVGEGDSAEALPVIRIVAPEANYDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQSY 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +GCRG +R+D + K F LE+N PGMT S+ P A G S+ + ++ +V Sbjct: 255 RVLGCRGWARADLML-RADGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVVAA 313 Query: 296 ASCL 299 A+ Sbjct: 314 ATLD 317 >gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 301 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 168/299 (56%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ++L+ LEIPY+ G L+S++ MDK SK ++ + + P I + R + Sbjct: 63 QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122 Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I P V+KP GGSS+ +IK+++ I + ++ W +++IE+++ G E+ Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + PK++F+ + KY+ S + ++P ++++EV+ +A ++A Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296 >gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 285 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 16/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 L S L ++ Sbjct: 65 RGV------------MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKAR 112 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE+++ G E T Sbjct: 113 ISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKWLCGPEFTVA 170 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ L P FY YE KY S + + PA + +Q L A +A+GC Sbjct: 171 IVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLVLQAWKALGC 229 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R D + D + + LE N PGMT S+ P A AG SF +L++ ++E A Sbjct: 230 TGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 284 >gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EVSL S + A+ + + + + ++ L Sbjct: 6 VMVIFGGQSGEHEVSLMSAASVMGAINKEKYHIIPVGIAKNGDWKLFNGSVEEIESGDWE 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 K D+ F VLHG +GEDG +Q + E Sbjct: 66 QSINELTEKGEDNKKFSLLPLTDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------I 124 +++IPY G++ASA++MDK+ +K+V+ + + P ++ L Sbjct: 126 MIDIPYVGCGVMASAVAMDKVITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATF 185 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--M 182 P +KP GSS+GI K +++ + + ++ + ++++IE +V+G E+ C V Sbjct: 186 EYPVFVKPANMGSSVGISKAKNREALKIAIKEAG--KYDNKIVIEAFVEGREIECAVLGN 243 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + +P +FY Y KY S +V+P + ++ +E+Q LA ++ + CRG Sbjct: 244 EAPRVALPAEIIPSHEFYDYHDKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRG 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR DF + + +V E+N PG T +S++P+M G + +L+ +++ A Sbjct: 304 LSRIDFFVENETNRVLVNEVNTMPGFTKISMYPKMWEATGLPYDKLIDELIQLA 357 >gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989] Length = 307 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 154/296 (52%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ER+VSL SG A AL G ID+ +V + D AF VLHG Sbjct: 12 VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+L+++ IPYT S +SAL+M+K+ SKQ+ GV I+++ T Sbjct: 72 GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + ++KP GSS+G+ + + + + + +L E+ + G E T Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAY--AHAKKYDAIVLAEKVLVGDEYT 189 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ L + ++ FY Y+ KY + ++ ++ P + L+ +EV LA A ++ Sbjct: 190 VAILNGQVLPIIKLET-DRVFYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C G R D + D + LE+N PGMT S+ P A AGYSF L+ +++ Sbjct: 249 QCEGWGRVDIMRDE-NGGFHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLVGEILK 303 >gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768] Length = 343 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 165 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 166 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 223 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 224 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 283 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340 >gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 308 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 158/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K +Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1] Length = 355 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 93/338 (27%), Positives = 142/338 (42%), Gaps = 43/338 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+E EVSL + KA AL+ + + I + + Sbjct: 5 ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 D+ F +LHG GEDG VQ +LELL +PY +G+LAS Sbjct: 65 EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSS 138 + MDK+ K + + G+ + R ++ P +KP GSS Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI K + ++ ++ + IEL D V V K D Sbjct: 185 VGISKCKNRTELEAAFKEAFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAKKD 244 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY + ++PA IP +YK+ A A +A+ C G+ R+DF +V Sbjct: 245 FYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADFFVTE-DERVI 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG TP S+FP + AG + +L+ ++E A Sbjct: 304 INEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIELA 341 >gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 379 Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L D FNVLHG Sbjct: 85 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQ--YDRVFNVLHG 142 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P + + Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +++ P +IKP+ GSS+G+ + +P + GD ++ E+++ G E T Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELPAAYATAVQC--GDVVMAERWITGREFT 260 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A +A Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G F L ++ Sbjct: 321 VDAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGMDFESLCWHIL 375 >gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82] Length = 311 Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 165/298 (55%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P +V++ Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P++IKP+ GSS+G+ ++K + L +++ H ++ E++++G E T Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKAT--EHDAVVMAEKWINGREFT 185 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ +L V + PK FY YE KY+ + + +P + K +Q LA A QA Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GC+G R D + D + LE+N PGMT S+ P+ A GY F +L + ++E Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302 >gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 315 Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 5 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + ++ + Sbjct: 65 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + PYV+KP+ GSS+G+ +I + SS+ ++++IE+Y+ GIEL Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIM--EKMIIEEYIPGIELHT 182 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V T PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 183 AV-LLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 301 Query: 299 LR 300 R Sbjct: 302 HR 303 >gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 314 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 188/310 (60%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57 ++VLMGG+S+EREVSL SG AL G+ V Q+ +G +++ L +PD+ FN Sbjct: 6 ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG +Q +L+ + I YTHSG+ SA++MDK ++ V ++ G+PV +V Sbjct: 66 LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +++ + PYVIKPL GSS+G+ +I+ + + +S G L+E+++ G EL Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASIARSW--RFGTSALVEEFIPGREL 183 Query: 178 TCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GVMGD +L VT+I + FY Y+ KY S+HVLPA+I D ++ + LA A Sbjct: 184 TVGVMGDRALTVTDITPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALAA 243 Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 H+A+GCRG SR+DF +D ++ LE N QPGMT S+ PE AA G ++ +L Sbjct: 244 HRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQLC 303 Query: 290 LWMVEDASCL 299 W+VE A+C Sbjct: 304 QWLVEQATCR 313 >gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021] gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21] Length = 297 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 10/299 (3%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVSL+SGKA AL G+ ID L + AFN+LHG G Sbjct: 2 LLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122 EDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 62 EDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDP 121 Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP GSS+G+ +K + + + + + +LIE+++ G EL Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAGDEL 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A+ A Sbjct: 180 TVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E + Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELS 296 >gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii HA] Length = 293 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 142/295 (48%), Gaps = 4/295 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+LMGG S+ER +SL SG+A L + D + D F +LHG Sbjct: 2 IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE I YT S AS SMDK R+K + + + PSI+ N + Sbjct: 62 RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIANIDQPIN 121 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GSS+GI + + L +W + LIEQ++ G E T Sbjct: 122 PINFPLPWAVKPTLEGSSIGISKVDNQMQLNDAL--MLAWQYAPYALIEQWIKGDEYTVA 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD + + +FY YE KY S + ++ P + L K +Q +A A AI Sbjct: 180 ILGDKA-LPVVRIITDQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAFFAINA 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G R DF+ + K + LEIN PGMT S+ P A G SF +L+ ++ + Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLVTSIINE 292 >gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110] Length = 366 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 157/349 (44%), Gaps = 53/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG SSE E+S+ S ++ A+AL+ +K+ I + ++ + A Sbjct: 6 VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 K D+AF VLHG +GEDG VQ +LE+ + Sbjct: 66 AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127 + Y SG+LASA++MDK +K G+ V + R + + + P Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + + +++ + +E+ + Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGNDEPIA 245 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 VP ++FY Y+ KY +S ++PA+I +++ A A A C G++R D Sbjct: 246 SAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMARVD 305 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 FL + + +++ EIN PG T +S++P++ A G S+ EL+ ++E A Sbjct: 306 FLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354 >gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710] gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304] Length = 304 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9] gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum SS9] Length = 308 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 10/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG SSER VSL SG+ A+E G + ID ++ K D F LHG Sbjct: 7 IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++ S + + +++ Sbjct: 67 GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126 Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 P V+KP+ G S+G+ + + + + +++ + D +LIE ++ G Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFIAGR 184 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E TC V+ L + +I F+ Y+ K+ S ++T+ P+ + + +++Q LA A+ Sbjct: 185 EYTCAVLNGKPLPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALALNAY 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG R D + D S VF +E+N PGMT S+FP A AG SF +++ +++ Sbjct: 243 NALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDS 301 Query: 296 A 296 A Sbjct: 302 A 302 >gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b] Length = 308 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 178/303 (58%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG+ AL + G +V+ ID L L D+ + LHG Sbjct: 3 VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116 +GEDG VQ++LE+ IPYT SG+LASAL+MDK R+K + ++ G+ V + + Sbjct: 63 KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P V+KP + GSS G+ + + + + ++ + +L+EQY+ G E Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNGLTIAMDEAMLREGIEKAFAC--DSAVLVEQYIKGKE 180 Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 LT V+G+ + +PK++FY YE KY+ S HV PA+I D+ EVQ+ A L Sbjct: 181 LTVPVIGNFGKEEALPVIEIIPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAVL 240 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+GC G SRSDFL K + LE N PGMTP+S+FP+ A G S+ ELL + Sbjct: 241 AHRALGCSGYSRSDFLVSEE-GKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERFI 299 Query: 294 EDA 296 E A Sbjct: 300 ELA 302 >gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355] Length = 304 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL I YT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 317 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 5/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK + S + ++ + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + PYV+KP+ GSS+G+ +I + SS+ ++++IE+Y+ GIEL Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIM--EKMIIEEYIPGIELHT 184 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V T PK+ FY YE KY+ + H+ PA+IP +IY+ A HQ +G Sbjct: 185 AV-LLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298 C+ +SRSDF ++P + + LE+N PG T +S+ PE+A G F EL+ +VED+ Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 303 Query: 299 LR 300 R Sbjct: 304 HR 305 >gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624] Length = 333 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG AL+ G D + L F LHG Sbjct: 11 VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELGELKRDGYARCFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG+LAS+++MDK+ +K++ + G+P V Sbjct: 71 RFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPTPRWKNVTSVDETR 130 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L P ++KP + GS++G+ + ++ H +L EQ++ G E+T Sbjct: 131 AALAELGAPMIVKPAREGSTIGLTKVNDATQCAQAYQLAA--QHDPLVLCEQFIAGDEVT 188 Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+G + V Y YE KY S + +++P+ +P +Q L + Sbjct: 189 VPVIGSGADARALPAIRIVAPGGNYDYEHKYFSDGTQYIIPSGLPEGEEARIQDLVLRSF 248 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+GCRG +R+D + D +R + LEIN PGMT S+ P A AG S+ +L L ++ Sbjct: 249 HALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDLCLRLLAT 308 Query: 296 ASCL 299 A+ Sbjct: 309 ATLD 312 >gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 361 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 158/347 (45%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG S+E E+S+ S ++ A + ++V I + R+ + Sbjct: 6 VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65 Query: 50 -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+AF +LHG++GEDG +Q L+ + IP Sbjct: 66 LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129 YT G+ ASAL+MDK SK VS G+ V P + V + + P Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + +P L + + + + + IE+ D Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEALAHACNLDTKVLIEQAMHGKEIEVAVLGNNDPIASA 245 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P SDFY Y+ KY + +PA++P ++ + VQ A A++A+GCRG++R DF Sbjct: 246 CGEIEPGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S +V + EIN PG T +S++P++ AG +F EL +++ A Sbjct: 306 VDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPELCDRLLQLA 352 >gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae] Length = 300 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVSL SG A + L DAG +D+ + L + F LHG G Sbjct: 2 LLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121 EDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ + G+P+ P I +++ + Sbjct: 62 EDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMSD 121 Query: 122 -------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP GSS+G+ + + + L ++ + +LIE++++G Sbjct: 122 EMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELRIAL--EFAFRYDKDVLIEKWLNG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++G+ L P FY Y+ KY S + + P+ + + +++ +LA A Sbjct: 180 PEYTVAIVGEQVLPSI-RIQPVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALAA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+GC G R D + D + LEIN PGMT S+ P A AG +F +L+ ++E Sbjct: 239 YKAVGCAGWGRVDVMRD-NDGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKILE 297 Query: 295 DA 296 A Sbjct: 298 LA 299 >gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1] Length = 306 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 143/311 (45%), Positives = 209/311 (67%), Gaps = 21/311 (6%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA ALE G+ V ++DVD+ + VL L+ Sbjct: 6 IAVLMGGFSSERSVSLSS----------GTACADALEKQGYHVIRVDVDQQIATVLKQLQ 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+ FN LHG FGEDG +Q ILE +IPYTHSG++ASAL+MDK R+K +V++ GV V PS Sbjct: 56 PDIVFNALHGPFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++NRF + +H + PPYVIKP++ GSS G++++ D+++PL + SS W +GD++++E+ Sbjct: 116 CVMNRFAIGREHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEK 175 Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G ELTC V +A + FY Y+ KY S H+ PA++ L+IY++VQR Sbjct: 176 YIPGRELTCAVLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQR 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ AH+AIGCRG+SRSDF F + ++ WLEIN QPGMTPVS+ P++A +G ++ +++ Sbjct: 236 MSLAAHRAIGCRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIV 295 Query: 290 LWMVEDASCLR 300 W+ EDASC+R Sbjct: 296 KWIAEDASCMR 306 >gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 301 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 167/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L IPY+ G L+S++ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I +++ W +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + PK++F+ + KY+ S + ++P +++EV+++A ++A Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296 >gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205] Length = 308 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG+A AL +G + D L D AF VLHG Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVA--YDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + + + Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDSDLN 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL L ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILEQ 302 >gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802] gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802] Length = 351 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVSL+S +A A+AL+ + + I + ++ VL Sbjct: 6 VGLLFGGRSGEHEVSLNSARAIATALQSGENPQKYDIIPIYIQKNGVWQAGETAQQVLND 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L++ P+ SG+L S Sbjct: 66 AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135 A+ MDK+ K + G+P I V+R + S + P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ + +E + V Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDRRIVIETGVKAREVECAVLGNENPKASVIGEITY 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ + +PA++P I ++Q +A A +A+ G++R DF + S+ Sbjct: 246 NSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVEDSQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +VF EIN PG T S++P++ G F EL+ +++ A Sbjct: 306 EVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLA 346 >gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202] Length = 308 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 157/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 120 SQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K +Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILEQ 302 >gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 311 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG+A AL G +D + L D AF LHG Sbjct: 12 VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVDTAQVALAELT--GFDRAFIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q LE L +PYT SG+L A+ MDK R+K + +PV P L+ T Sbjct: 70 RGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALLRPETNRQ 129 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP GSS+G+ K ++ L+ ++ + + D +L E++++G E T Sbjct: 130 ALIGSVGLPLMIKPAHEGSSIGMA--KVERPEELEAARAEAARYDDLVLAERWIEGGEYT 187 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ +L + P+ Y +E KY S ++ + PA + +++++LA A + Sbjct: 188 VAILGEEALPAIRLETPRGF-YDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFRVA 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DF+ D + + LEIN PGMT S+ P A G F EL ++ D+ Sbjct: 247 GASGWGRVDFMRDRQ-GRFWLLEINTIPGMTDHSLVPMAARAVGIDFDELCWRILLDS 303 >gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S+E EVS +G A A AL G+ VS ++++ R+V + +LK D+ FN +H Sbjct: 6 IIVLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q LE+ EIPYT SGI+A ++ M+K SK V +P SI N Sbjct: 66 GRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQS 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 D + S P V+KP GSS+G+ ++K++ + + ++ + L++EQY+ Sbjct: 126 KEDIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAVTEAL--TYDPILVVEQYL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +G E T V+ +L P S Y Y KY++ + +++PA I D+ KE+Q + Sbjct: 184 NGREFTVSVLDGKAL-AIIEIRPHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G R D + D ++ LE N PGMT S+ P+ A G F EL + Sbjct: 243 LVYREVQASGAIRVDVMTDDKDN-MYVLEYNTIPGMTATSLVPKAAKEVGIDFPELCEKI 301 Query: 293 VEDA 296 + A Sbjct: 302 LLTA 305 >gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] Length = 313 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K ++ L + +++E+ ++G Sbjct: 132 ARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPAL--EEAVKFDKIVVVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P I + +++LA A Sbjct: 190 GGEYTACIAGDLDLPIIRIVPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKKLARQA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S++EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDGEGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYQELVVKVL 307 >gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 301 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL SGK+ ++ ++V I +D ++ D A LHG Sbjct: 3 VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L IPY+ G L+SA+ MDK SK ++ + + P I + + Sbjct: 63 QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ +IK+++ I + + W +++IE+++ G E+ Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKW--DSEVIIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + PK++F+ + KY+ S + ++P +++EV+ +A ++A Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + + LE+N PGMTP S+ P+ AA SF EL+ +++++ Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296 >gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 304 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + PA+ + ++ LA QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAAGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301 >gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105] Length = 323 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 150/301 (49%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+EREVSL SG +AL+ G D + LA + D A LHG Sbjct: 13 VVVLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K S G+ + + S Sbjct: 73 RFGEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVS 132 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS+LG+ +K + ++ + +L E++V G ELT Sbjct: 133 EVVQRLGLPLIVKPAQEGSTLGLTKVKTVDQLQAAF--DLAYKYDPNVLAEKFVSGQELT 190 Query: 179 CGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 VMG+ A Y Y KY + + P+ + D EVQ L A+ Sbjct: 191 VPVMGEGAGAHALPVIRIQAPDGNYDYHNKYIGNETKYFCPSGLNSDFEAEVQALCVKAY 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +GC G R+D L D S K + LE+N PGMT S+ P A +G + +L+L + Sbjct: 251 QVLGCAGWGRADVLVDE-SGKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLVLQIAAS 309 Query: 296 A 296 A Sbjct: 310 A 310 >gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501] Length = 349 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS++S +A A AL D + V + + ++ + Sbjct: 6 IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKNGVWIAGETADEVLES 65 Query: 46 -------------LAHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L P+ + F VLHG GEDG +Q +L L+++P+ SG+L S Sbjct: 66 KTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135 A+ MDK+ K + G+P V R + S I P +KP Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++S++ + +E + V Sbjct: 186 GSSVGIAKARSHSELEAALDSAASYDRRIVIEAGVTARELECAVLGNDNPKASVVGEITF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ S +PA +P + K++Q +A A + + G++R DF + ++ Sbjct: 246 DSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFYVEETQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P++ G SF +L+ +++ A Sbjct: 306 AIYLNEINTLPGFTKFSMYPQLWQATGISFEQLVDKLIQLA 346 >gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893] Length = 325 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 6/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV +GG S+EREVSL SG+A SAL AG +DV + + + D F LHG Sbjct: 26 VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +QAIL IP+T S +LASAL+MDK+RSK V CG+P + Sbjct: 86 RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPTPKFRAMASAEEAG 145 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +S P +KP + GSS+GI + +Q + + + +L+E++++G E T Sbjct: 146 SLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAY--TQAAALDPLVLVEEWIEGPEFT 203 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ D +L + FY Y+ KY + ++ + +P + D ++Q LA A + + Sbjct: 204 VSLLQDQALPAIGL-CTDHVFYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRVL 262 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCR R D + D + + LE+N PGMT S+ P A AG SF EL++ ++ D Sbjct: 263 GCRTWGRVDIMQDRQ-GEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRILMD 318 >gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145] Length = 309 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A AL +G D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L +PYT +G+ SA+ MDK+++KQV +P P +V + + + Sbjct: 68 RGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDSDAT 127 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 EIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGREYT 185 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+ +L V + P+ FY YE KY + + +P + ++++ L+ A QA Sbjct: 186 IVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ AA GYSF EL + ++E Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILEQ 302 >gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 376 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVS S ++ ++ ++V I + + + Sbjct: 6 VAIIFGGQSSEHEVSRVSAQSVIENIDKEKYEVEIIGITKKGQWLKYNGPVEKIGSGEWE 65 Query: 46 ---------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG GEDG +Q + Sbjct: 66 AVAHNKLLEGKSSENETASEITNVNSARQVIAGNTKKPIDVVFPVLHGCNGEDGTIQGLF 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123 EL IPY G+L +A+ MDK SK + G+P ++ NR +++ + Sbjct: 126 ELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVFNRKQVNNRLEEAVAQVEST 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181 ++ P +KP GSS+G+ +S+ L+ ++ + ++L+E+++DG E+ C V Sbjct: 186 LTYPCFVKPANAGSSVGVNKASDRESLEKALIIAA--KNDRRILVEEFIDGREIECAVLG 243 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + VP ++FY YE KY + + + + ++++ A A + + Sbjct: 244 NDEPVASTVGEVVPCNEFYDYEAKYQVGDSSKVVIPAENLSTETVEKIREYAVRAFKCLD 303 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR DF + ++ EIN PG T +S++P++ A +G + +L+ ++E A Sbjct: 304 CAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMYPKLWAASGIPYSQLIDKLIELA 360 >gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 304 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P++I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ ELL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] Length = 304 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ ELL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 318 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + G EDG+VQ ++E ++PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGLCTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+GI + + ++ ++ + LL+EQ ++ Sbjct: 139 ADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+G+ +L VPK +Y Y KY + ++ ++ P + +++LA Sbjct: 197 GDELTVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A G RG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus stomatis DSM 17678] Length = 298 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GGISSERE+SL SGKA L+ ++V +D + D+A LHG Sbjct: 3 VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFT 117 FGEDG+VQ+ILE I Y L S + MDK +K + + V Sbjct: 63 KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P IKP GGSS+ IK + + + + + +LIE+YV G+E Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAV--REGLKYDEIVLIEKYVKGVEY 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++ ++F+ +E KYS+ N ++ ++ K+++ + + Sbjct: 181 TSFILNGQVFPTI-RITSDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D++ + V+ LE+N PGMT S+ P+ A G S++ LL ++E + Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIESS 297 >gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514] gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514] Length = 304 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 150/296 (50%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+EREVSL +G A A AL G +V ++D + A ++ F LHG Sbjct: 12 ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP V+KP++ GSS+G+ + + L ++ + Q+L+E+ + G E T G Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ PK+ Y Y+ KY++ + ++ PA + +Q A A +AIG Sbjct: 188 IL-GNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R SR D + P + + LE+N PGMT S+ P+ A AG + EL MV+ A Sbjct: 247 RDYSRVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301 >gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 318 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2] Length = 322 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER+VSL+SG A +AL D L K D +LHG Sbjct: 18 VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114 GEDG +Q L+LL+IPYT + +L SAL+MDK+ +KQV S G+P Sbjct: 78 RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++N+ +Q+L+EQY+ G Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQLENAI--QDAFNYDNQVLLEQYIKG 195 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + Y Y KY + + P+ + + + +L+ A Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHTF-YDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +I G R D + D + LE N PGMT S+ P+ A AG SF EL+L ++ Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVLAILA 313 Query: 295 DA 296 + Sbjct: 314 TS 315 >gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 299 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 6/296 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 +L GG S EREVSL G+ A+AL++ G V+ D + ++ + D AF LHG Sbjct: 5 LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREHDAAFINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQAIL+ + PY +G S L++ K ++Q+ G+ + + + Sbjct: 65 PGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPGPNW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +K GGSSL + + ++ + L S G++ ++E V G E+TCG Sbjct: 125 KPDLQYPMFVKSNTGGSSLHLSRVTNEEELYTALNSLFSM--GEEAIVETAVVGREVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+G+ +L + V K +++ Y KY+ + + PA I + +VQ A AH A+G Sbjct: 183 VLGEEALAPI-LVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALRAHHALGL 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G SR+DF+ ++ LE+N PGMT S+ P AA G SF +L+ ++E A Sbjct: 242 KGYSRADFIL-QDDGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLLELA 296 >gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 302 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 179/298 (60%), Gaps = 3/298 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L+GG S ER+VSLS+G+A AL G++V ++D + + DLAFN LHG F Sbjct: 8 LLVGGPSKERKVSLSTGRAVYLALRKLGYEVVKVDP-KIGSKNFSQHNCDLAFNALHGQF 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q++LE +IPYTHSG+ +SA++MDK++SK+ + ++ + + + Sbjct: 67 GEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKAKIKTPKFKVIKKLSDLNNI 126 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + +V+KP+ GSS+G+++ K S+ ++ +G +LL E++++G E+ +M Sbjct: 127 ISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAAIM 185 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 G +L EI ++ + + + H++PA + IY +V ++A AH+ + C+G Sbjct: 186 GSKALGAIEIKPSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLSCKG 245 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++RSDF +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S R Sbjct: 246 VTRSDFRVT-RDNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTNR 302 >gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18] gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035] gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2] gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18] gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2] Length = 304 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSIYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301 >gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT] gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Clostridium novyi NT] Length = 343 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 37/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+L GG S+E EVS S + ++ + + V I + + Sbjct: 5 VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +L + + D+ F V+HG +GEDG +Q + +LL IP G+++SA+ MD Sbjct: 65 KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143 K+ +K V+ + GV ++VN + ++ + IKP GSS+GI Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + L ++ ++ + + IE+ + VP ++FY YE Sbjct: 185 AHNREELEAGLEEALKFDRKVLVEVALNAREIEVAVLGNDEPVAATPGEIVPANEFYDYE 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KYS+ S +LPA + + ++V+ LA + + C G+SR DFL D + +V+ EIN Sbjct: 245 AKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P+M G ++ EL+ ++E A Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337 >gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] Length = 318 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEAETQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166] Length = 314 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAA--WRAASAYDAQVLVEQWIHGPEFT 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + Y Y+ KY + ++ + +P + +E++ L+ A +A+ Sbjct: 194 VAVLHGEVLPPIGLGTPHTF-YDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEAV 252 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG +R D + D + LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638] Length = 302 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 7/296 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 ++ GG S EREVSLS K AL + G V +D + +L D AF LHG+ Sbjct: 5 LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS 120 GEDGL+QA+L + PY + +S L+++K +K V G+ + Sbjct: 65 PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PP IKP GGSSLG+ + + + + + GD L+E+Y GIE+TCG Sbjct: 125 LQDLEPPVFIKPNSGGSSLGMTFARTAEELEKGIETVF--SLGDSALVEEYTKGIEVTCG 182 Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ + + I P + +F+ Y KY+ + + PA I + +++Q++ AH+ +G Sbjct: 183 ILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLLG 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 SR+DF+ + LE+N PGMTP S+ P+ A AGYSF EL+ ++E Sbjct: 243 LTDYSRADFIISE--GVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIEL 296 >gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON] Length = 360 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S + ++ ++ I + + +L Sbjct: 6 IAVLFGGRSGEHEVSLMSAVSVLRNMDKDKYEPIMIGITKEGRWMLYEGALEDIEENRWQ 65 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D F VLHG GEDG VQ +LEL +IPY Sbjct: 66 ISARPVVLAPDPSYKGFIDIKRDCTFIPVDAVFPVLHGPHGEDGTVQGLLELADIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+L+MDK+ SK+V G+ V + + P +KP Sbjct: 126 GVLASSLAMDKVLSKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTE 191 GSS+GI + + + + ++L+E+++DG IE Sbjct: 186 NMGSSVGITKAHNRDELMEAIELAG--KYDRKILVEEFIDGHEIECAVLGNDYPEASTVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP ++FY Y KY + V+PA +P+D+ +EV+R+A A++A+ C G++R DFL Sbjct: 244 QIVPCNEFYDYNAKYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ + + +L+ ++E A Sbjct: 304 KKSDNTIYLNEVNTIPGFTKISMYPKLWDASSLPYDKLIDRLIELA 349 >gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13] Length = 299 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 161/298 (54%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ER++S+ SG A AL++ ++VS ID + L + D AF LHG Sbjct: 6 IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFICLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++LELL++P+T S AS L+M+K SK V ++ + +++N+ +D Sbjct: 64 KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123 Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + +I+ P+++KP GSS GI ++K + L + + + ++ E++++G E Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAF--TDASKYDPTVIAEEFIEGREF 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T + K++FY Y KY S + P + ++ ++++ +A A + Sbjct: 182 TVSI-LGNKSLGVLEITTKNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 IGC G R DF+ D + +E+N PGMT S+FP A AG +F + + +V+ Sbjct: 241 IGCSGWGRVDFMMDKKFN-FYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVDL 297 >gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 318 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 11/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 E 294 E Sbjct: 315 E 315 >gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945] gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18] gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140] gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19] gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11] gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1] gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1] gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332] gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679] gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090] gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945] gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291] gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02] gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19] gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11] gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1] gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332] gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679] gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62] gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 304 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301 >gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1] Length = 308 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +LE L +PYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 67 GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 120 SQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K +Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 245 AVGAESWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666] Length = 338 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 163/304 (53%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+ERE+SL SG+ AL G D L + F LHG Sbjct: 24 VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDISELKKDEFARCFIALHG 83 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG++AS++++DK+ +K+V+ + G+P +L+ R + S Sbjct: 84 RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGS 143 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P ++KP + GSS+G+ + + + + Q+ + +L EQ++ G Sbjct: 144 ADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDAD--ILCEQFISG 201 Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC +A V Y Y+ KY + + +++P +P +Q+L Sbjct: 202 DEVTCPVLGTGSEARALPVIRIVAPDGNYDYQNKYFTDTTQYLVPCGLPEGEEAVIQQLV 261 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++ + CRG +R+D + D ++RK + LEIN PGMT S+ P A AG S+ +L + Sbjct: 262 LQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYEDLCIE 321 Query: 292 MVED 295 +++ Sbjct: 322 VLKT 325 >gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 359 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ I + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R ++ I P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + ++ +P L ++ ++ + IE + + + V Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPQASIAGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y KY + + +PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMDRN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G + LL ++ A Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348 >gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70] gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70] Length = 364 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49 + +L GG S E VSLS+ A +A++ F V I + + + L Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64 Query: 50 KP-----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + + + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + ++ + ++++E+ + G E+ D V Sbjct: 185 PANAGSSVGITKCKQRDDLKAAFAEAF--KYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + EIN PG TP S+FP + ++G S+ EL+ +++ A Sbjct: 303 LTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQLA 348 >gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 318 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GDA+L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDAALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] Length = 304 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640] gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970] gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06] Length = 304 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ + Sbjct: 67 VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + PA+ + + + R A QA Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAAGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301 >gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411] Length = 294 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58 +AV+ GG SSERE+S+ +G A + L F+ I D R + P + F L Sbjct: 3 VAVVCGGNSSEREISIITGNAVYNGLLKN-FEAECIVCDNARDCLDKIIKSSPSVVFIAL 61 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGE+G +QA LE L I +T S ++M+K +K ++ +P L+ + Sbjct: 62 HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLI-KKVE 120 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + +++ P IKP GSS+ + + + ++L+IE+ + G ELT Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANN--ENQAKYISQNLLKKHNELIIEKRLSGKELT 178 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 GV+ +L PKS FY Y+ KY+ + +++PA + +I K ++ +A A +AI Sbjct: 179 VGVLFGKAL-PIIEIRPKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAFEAI 237 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+ +R DF+ D + LEIN PGMTP S+ P+ A AG SF EL +VE A Sbjct: 238 GCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEGA 293 >gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM 16795] Length = 301 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59 + V+MGGISSEREVSL+SGK+ SA+ + V ++ +D + +V D A +LH Sbjct: 5 VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116 G +GEDG +QA+LE + I Y+ L S + MDK SK+V+ + +P P + + Sbjct: 65 GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D+ + P IKP GGSS+ + + + + + Q D ++IE Y+ G E Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGLEV--DDIVMIEGYLPGDE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++ +I+ P F + + + ++ E+ + Sbjct: 183 YTSFILNGEVFPTIKISSPNEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECWD 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A CR R DF+ + K + LE+N PGMT S+ P A G S+ EL+ ++E Sbjct: 243 AFNCRAFVRVDFIL--SNGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298 >gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1] gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Magnetospirillum magneticum AMB-1] Length = 305 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 137/306 (44%), Positives = 190/306 (62%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+ + + +PD+ FN Sbjct: 5 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + +S G+PV ++ R Sbjct: 65 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P+V+KPL GSS+G+ +++ +Q PL D++L+E ++ G EL Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL----PDWPFDADEVLVESFIPGREL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD +L FY YE KY+ S H++PA IP Y E RLA AH+A Sbjct: 181 TAAVMGDRAL-GVLEITSDHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHKA 239 Query: 238 IGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SR+D +D ++ LE+N QPGMT S+ PEMAAY G +F EL+ WMV Sbjct: 240 LGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWMV 299 Query: 294 EDASCL 299 E+A C Sbjct: 300 EEARCD 305 >gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61] gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61] gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52] Length = 367 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50 + VL GG S E +VSLS+ A +A++ F V I + + + +K Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 51 ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFTQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + +++ + +++IE+ + G E+ + V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--QYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A QA+ G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 328 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 155/304 (50%), Gaps = 14/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 +AVL GG EREVSL SG A SALE+AGFKV D+ + + D F L Sbjct: 17 VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHIDSVFIAL 76 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------L 112 HG++GEDG VQ+ L+ L +PY+ SG LA LSMDK +K +++ GVP + Sbjct: 77 HGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVLVLKGSS 136 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + V+KP GGS+LG+ V+ Q + + +W + + +IE+Y+ Sbjct: 137 FSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRCVIEKYI 194 Query: 173 DGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG++L V + P+ FY Y+ KY+ + +++PA I ++ + Sbjct: 195 DGVDLAVTVWKQKGYLEALPEVMICPEKGFYDYDSKYTPGKTRYIVPAPFDPSIRSDIHQ 254 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A +A+ C G +R DF + LE+N PGMT S+ P+ AA AGY F L Sbjct: 255 MACRAFEALSCEGYARVDFRV-EEKGTPWVLEVNTAPGMTGTSLTPKAAAAAGYDFPAFL 313 Query: 290 LWMV 293 +V Sbjct: 314 SHVV 317 >gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941] Length = 371 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 165/361 (45%), Gaps = 63/361 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51 + VL GG S E EVSL S +A L+ + V+ I + + + LA P Sbjct: 7 VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG GEDG VQ Sbjct: 67 AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121 +LEL+EIPY G++ASA+ MDK +K S G+PV P +L+ R + Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 ++ P +KP GSS+G + K L + + + ++++EQ + E+ + Sbjct: 187 QRLTYPMFVKPANLGSSVG--ISKVTGRAALARGIAEAAAYDRRIVVEQGIPAREIEVSI 244 Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G+ + + VP ++Y YE KY S S ++PA I L++ V+RLA A +AI Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL + + ++ EIN PG TPVS++ M +G + +LL ++E A Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIELALER 364 Query: 300 R 300 R Sbjct: 365 R 365 >gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius C56-YS93] gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1] Length = 364 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49 + +L GG S E VSLS+ A +A++ F V I + + + L Sbjct: 5 VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64 Query: 50 KP-----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + D+ F +LHG GEDG VQ +LELL IPY Sbjct: 65 QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + + + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + ++ + ++++E+ + G E+ D V Sbjct: 185 PANAGSSVGITKCKRRADLQAAFAEAF--KYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY Y+ KY N+ ++PA + + Y+ ++++A A +A+ G+ R+DF Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ EIN PG TP S+FP + ++G S+ EL+ +V+ A Sbjct: 303 L-GEDGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQLA 348 >gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521] gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 301 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL+SGK+ + ++V I +D+ +V D A LHG Sbjct: 3 IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQA+L+ L IPY+ G L+SA+ MDK +K ++ + + P I ++ Sbjct: 63 QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D+ + P V+KP GGSS+ ++K+++ I + + W +++IE+++ G E+ Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKW--DSEVMIEKFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V GD L V I F + ++ ++++EV+++A ++A Sbjct: 181 TCPVYGDRMLPVIAIKPKAEFFD--FASKYQDGGAEEVVVELDKNLHEEVEKMALATYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR D + + LE+N PGMT S+ P+ AA F +L+ ++ED+ Sbjct: 239 LKCEVYSRVDMIVTT-DGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296 >gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426] gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426] Length = 367 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50 + VL GG S E +VSLS+ A +A++ F V I + + + +K Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 51 ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKRGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + +++ + +++IE+ + G E+ + V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--QYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A Q + G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQVLDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046] Length = 309 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG A AL +G D L + D AF VLHG Sbjct: 10 VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTEL--VGYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQV +P P ++++ + + Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQESDLA 127 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS+G+ ++K + + + +++ H ++ E+++ G E T Sbjct: 128 EVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + + +++Q L A QA Sbjct: 186 ISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILEQ 302 >gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799] Length = 306 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 147/299 (49%), Gaps = 12/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L+ G D L D AF VLHG Sbjct: 10 VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERSLDELK--GFDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG VQ LEL++IPYT S +L A++MDK+R+K + + G+P Sbjct: 68 RGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESFSP 127 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + P ++KP GSS+G+ + S+ + ++ + D +L+E +V G Sbjct: 128 NSAEDIMARLGSPVMVKPACEGSSIGMAKAEDAASLQKAI--DTALQYDDTVLVEAWVHG 185 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++G+ +L + P Y YE KY S + + PA + D + ++ LA A Sbjct: 186 PEFTVSILGEEALPAIRMETPNVF-YDYEAKYQSQTTQYHCPAGLSDDDEQALRALALRA 244 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A+G G R D + D LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 245 FKAVGASGWGRVDVMRDA-DGSWRLLEVNTVPGMTETSLVPKAANAVGVDFDTLVARIL 302 >gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 339 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 15/311 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S ER++SL SGKA AL+ + +IDV+ + L + PDLAF LHG Sbjct: 19 ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++M+K SK + S G+ I+ + Sbjct: 79 PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I PYV+KP+ GSS+G+ + + + + G + ++ Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198 Query: 177 LTCGVMGDASLDV----------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + T PK+ FY Y+ KY++ + H+ PA+IP +IY+ Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHIFPAEIPDNIYEM 258 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSF 285 A H+ +GC+ ISRSDF ++P + LEIN PG T +S+ PE+A G F Sbjct: 259 TLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDF 318 Query: 286 RELLLWMVEDA 296 EL+ ++ED+ Sbjct: 319 NELVKIIIEDS 329 >gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU] gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900] gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU] gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978] gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624] gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606] gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2] gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715] gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059] Length = 308 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P I Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K++Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G G R D + D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302 >gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium sp. YIT 12067] Length = 315 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 14/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV++GG SSE E+S +G A A+AL + G+ +++++ ++ L + + FN +H Sbjct: 9 VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPSNLINELRDMNAKVVFNAVH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--------SCGVPVCPSI 111 G +GEDG +Q+ILE IPYT G+LASA+SMDK +K+ + + + Sbjct: 69 GMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDAG 128 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P VIK GSS+G+++ K Q + L ++ + + +L E+ Sbjct: 129 DLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPALEEAF--KYSENVLAEKC 186 Query: 172 VDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + G ELT +M + P S Y + KY+ + + PA +Q Sbjct: 187 IKGKELTISIMEENGEPKPLPVIWIAPHSGAYDFHSKYTKGATDYHCPAPFDEKTTAYIQ 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A ++ +G G++R D + + LE N PGMT S+ P+ AA G SF EL Sbjct: 247 KIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFPEL 306 Query: 289 LLWMVEDA 296 ++ A Sbjct: 307 CEKILLSA 314 >gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 304 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] Length = 359 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E EVSL S K+ + L+ +++ I + + L Sbjct: 6 IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG GEDG +Q +LELL+IPY Sbjct: 66 KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PPYVIKPLK 134 + +L+SAL MDK+ +K++ G+P ++V R ++ I P +KP Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + ++ +P L ++ ++ + IE + + + V Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPQASIAGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P ++FY Y KY + + +PA +P + +EV++LA A++A+ RG++R DFL D Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMDRN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G + LL ++ A Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348 >gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3] Length = 367 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50 + VL GG S E +VSLS+ A +A++ F V I + + + +K Sbjct: 5 VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64 Query: 51 ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L IPY Sbjct: 65 QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ I V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + +++ + +++IE+ + G E+ + V Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--KYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++++A A QA+ G++R DF Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348 >gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 304 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ V L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2] gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2] Length = 305 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 162/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 + V+MGG S+EREVSL +G+ + L+ + ++V I +D+ + + H D A L Sbjct: 3 IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ S GV + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGVLTPAGLCWQGMGD 122 Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 Q + P ++KP GGSS+GI ++ ++ + + ++ +L+E ++ G Sbjct: 123 YDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKAC--ALDQTILVEPFIQGT 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ELTC ++ L + I S+++ Y+ KY + + + ++P I + V+ A ++ Sbjct: 181 ELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEEKV-IQLPPVIEQRVRETALASY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + C+ +R D + + LE+N PGMT S+ P+ AA AG +F +LL ++ Sbjct: 240 RLLQCKVYARIDMILCQ--DVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDRIITS 297 Query: 296 ASCLR 300 + R Sbjct: 298 SLHER 302 >gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4] Length = 366 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 152/296 (51%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+ER VSL SG A AL++ G + D L D FNVLHG Sbjct: 72 VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQ--YDRVFNVLHG 129 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDGL+Q +L+ +IP T SGILASAL MDK+R+KQ+ CG+ P + Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAETDWQ 189 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +++ P +IKP+ GSS+G+ + +P + GD ++ E+++ G E T Sbjct: 190 QIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELPAAYATAIQC--GDVVMAERWITGREFT 247 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + V + ++FY +E KY+ ++++ +P + K +Q L+ A +A Sbjct: 248 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFRA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G R D + D + LEIN PGMT S+ P A G F L ++ Sbjct: 308 VEAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGIDFESLCWHIL 362 >gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse] Length = 306 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 145/311 (46%), Positives = 208/311 (66%), Gaps = 21/311 (6%) Query: 1 MAVLMGG----------ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA LE G++VS++DVD + VL L+ Sbjct: 6 VAVLMGGGSSERSVSLSS----------GTACADILEARGYRVSRVDVDSHIASVLERLQ 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+AFN LHG FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS Sbjct: 56 PDVAFNALHGPFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++RF + +H + PPYVIKPL GSS G++++K+++S P + + W + D++++E+ Sbjct: 116 CIMSRFAVGREHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEK 175 Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G E TC V +A FY+Y+ KY S S H+ PA++ +IY+ VQR Sbjct: 176 YIPGREFTCAVLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQR 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ AHQAIGCRG+SRSDF F+ + ++ WLEIN QPGMTP S+FP++A +G ++ +++ Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIV 295 Query: 290 LWMVEDASCLR 300 WMVEDASC+R Sbjct: 296 QWMVEDASCMR 306 >gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168] Length = 343 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 44/340 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49 VL GG S E EVS+ S ++ + +KV + + V Sbjct: 7 GVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINEV 66 Query: 50 ------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 K D+ F VLHG +GEDG +Q L+ L+IPY + +L+SA M Sbjct: 67 KASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAAGM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGII 142 DK K + S +P + + + + P +KP GSS+G+ Sbjct: 127 DKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIGVS 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200 + + L + + +L+ E++V+G E+ C V+G+ ++ + +P +FY Sbjct: 187 KVHSPGEVKKALEKGFY--YDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPGKEFY 244 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KY + V+PA + + + + LA A +AI G +R DF + + Sbjct: 245 DYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFL-KNNGVLLVN 303 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG T S++P++ G ++ +L+ ++E A R Sbjct: 304 EINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343 >gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1] gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1] Length = 306 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 155/311 (49%), Positives = 216/311 (69%), Gaps = 21/311 (6%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA LE G++VS++DVD + VL L+ Sbjct: 6 IAVLMGGFSSERSVSLSS----------GTACADVLEAQGYRVSRVDVDGHIASVLEQLQ 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+AFN LHG FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS Sbjct: 56 PDIAFNALHGPFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++RF + +H + PPYVIKP+ GSSLG+I++K+++S+P + S W + D +++E+ Sbjct: 116 CVMSRFAVGKEHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEK 175 Query: 171 YVDGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G ELTC VMG+ +LDV EI FY Y+ KY S S HV PA++ +IY+ VQR Sbjct: 176 YIPGRELTCAVMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQR 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ AHQAIGCRG+SRSDF FD + ++ WLEIN QPGMTP S+FP++A +G ++ +++ Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIV 295 Query: 290 LWMVEDASCLR 300 WMVEDASC+R Sbjct: 296 QWMVEDASCMR 306 >gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Magnetospirillum magnetotacticum MS-1] Length = 306 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 133/306 (43%), Positives = 189/306 (61%), Gaps = 12/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNV 57 + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+ + + +PD+ FN Sbjct: 6 VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK ++ + + G+PV +V R Sbjct: 66 LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P+V+KPL GSS+G+ +++++Q PL D++L+E +V G EL Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPLA----DWPFDADEVLVESFVPGREL 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T VMGD +L + FY YE KY+ S H++PA I Y E RLA AH+A Sbjct: 182 TVAVMGDKAL-GVLEITSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHKA 240 Query: 238 IGCRGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SR+D +D + ++ LE+N QPGMT S+ PE+AA+ G +F L+ WMV Sbjct: 241 LGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWMV 300 Query: 294 EDASCL 299 E+A C Sbjct: 301 EEARCD 306 >gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE] Length = 297 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 10/299 (3%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L+GG S+EREVS +SGKA AL G+ ID L + AFN+LHG G Sbjct: 2 LLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHGRGG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122 EDG +Q +LE + +PYT G++ASAL+MDKMR+K + + G+PV +V R T Sbjct: 62 EDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAELDP 121 Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP GSS+G+ +K + + + + + +LIE+++ G EL Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAGDEL 179 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ + L VP+ +FY YE KY S N+ + PA + + +E+ L A+ A Sbjct: 180 TVSVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT S+FP+ AA G SF +L++ ++E + Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELS 296 >gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171] Length = 304 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + LV D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501] Length = 314 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG ID + L+ + D AF VLHG Sbjct: 16 VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 GEDG +Q +LE IPYT SGILASAL+MDK+R+KQV S G+P + Sbjct: 76 RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + ++ P ++KP GSS+G+ + + ++ + Q+L+EQ++ G E T Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAA--WRAASAYDAQVLVEQWIQGPEFT 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V+ L + P + Y Y+ KY + ++ + +P + + ++ L+ A +A+ Sbjct: 194 VAVLHGEVLPPIGLGTPHTF-YDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEAV 252 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G RG +R D + D + LE+N PGMT S+ P A AG F++L+L +++D+ Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309 >gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 313 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 147/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL+SGK L DAG D L AFN LHG Sbjct: 12 VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDPIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P D E++R+A A Sbjct: 190 GGEYTACIAGDLDLPVIKIVPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKRVARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD] Length = 313 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307 >gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 302 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ + +L +K D A LH Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 62 GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P +KP GGSS+ + K + I + + ++++IE +V G E Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAV--MEGLKYDEEVIIESFVKGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans NG80-2] gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2] gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16] Length = 364 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S E +VSLS+ +A +A++ F V I + + Sbjct: 5 VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64 Query: 47 --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +LE+L +PY Sbjct: 65 QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131 +G+LASA+ MDK+ K + + G+ + V ++ + + P +K Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189 P GSS+GI K+ + ++ + +++IE+ + G E+ + V Sbjct: 185 PANAGSSVGISKCKQRDDLKTAFAEAF--KYDRKIIIEESIVGREIEIGVIGNDEPICSV 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VPK +FY YE KY + ++PA + + Y+ ++ +A A +A+ G++R DF Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TP S+FP + ++G + EL+ ++ A Sbjct: 303 L-AEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELIERLIALA 348 >gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1] gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1] Length = 309 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 8/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER+VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTEL--VGYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L+IPYT +G+ SA+ MDK+++KQ+ +P P +V++ + + Sbjct: 68 RGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDSDLN 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 EIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKAT--AHDAIVMAEKWITGREYT 185 Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+ +L V + P+ FY Y+ KY + + +P+ + K++Q L A Sbjct: 186 IVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAFHT 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G G R D + D + LEIN PGMT S+ P+ A G F L + ++ Sbjct: 246 VGASGWGRVDAMQDEHGN-FWLLEINTVPGMTSHSLVPKAAQAIGIDFDALCVEIL 300 >gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 311 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 10/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ ++V I++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+++ + G+ + R Sbjct: 63 AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLERAMFAD 122 Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ P +KP GGSS+G+ + + + + L ++ W G+ +L+E V G Sbjct: 123 GTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVSG 180 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TC ++ L V I + S P +P D V+ A Sbjct: 181 QEITCPILDGELLPVLGIRAANGAEWFDYEAKYSDGGAEEKPITLPPDEETRVRAAALAC 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL ++E Sbjct: 241 YRLLQCRVYARVDMIL--KDGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRIIE 298 Query: 295 DASCLR 300 + R Sbjct: 299 LSLAER 304 >gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 317 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D +++ L D+AF LH Sbjct: 12 VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE + IPYT SGI AS+++++K ++K + G+ V S+ ++ + Sbjct: 72 GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131 Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++LIS P V+KP GSSLG+ +++ I + + + + ++EQ++ Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAV--DVEAMVEQFI 189 Query: 173 DGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT GV+G+ V +I + +FY+Y KY++ S H+ PA + D+ + Q Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH +GCRG+SR+D + D + LE N PGMT S+ P+ A AG F++L Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVDA-DDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308 Query: 290 LWMVEDA 296 ++ A Sbjct: 309 EKLIALA 315 >gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355] Length = 305 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R M S Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + + +P L ++ H D +L+E + Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L S+FY YE KY S ++ + PA + + E+Q+L Sbjct: 182 LSGEEYTVGILGDQILPAI-KIKTASEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L++ Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299 Query: 292 MVEDA 296 ++E A Sbjct: 300 ILELA 304 >gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str. F0314] Length = 303 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETPLADLKTQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG+VQ LEL IPYT SG+ ASA+ MDK R K + + G+PV ++ T Sbjct: 67 TYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLREDTDFE 126 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K+ + + +++ E+++ G E + Sbjct: 127 AVEKRLGLPMFVKPANEGSSVGVVKVKEKGRLKDVYAELKHMK--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V+G L + VP ++FY YE KY+ ++ + P+ + + ++ LA +AI Sbjct: 185 CPVLGGRGLPSI-LIVPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRGAEAI 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R DFL D L K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 GAEGCVRVDFLKD-LDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILKTA 300 >gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1] gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1] Length = 339 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 149/333 (44%), Gaps = 35/333 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S E EVSL S ++ +AL F V+ + + + + Sbjct: 7 LLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSSQG 66 Query: 46 --------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 A D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ +K Sbjct: 67 GDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 QV+ S G+P L R + P +KP GSS+GI + + Sbjct: 127 QVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSPEE 186 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207 + L + + L E+ G+ +DFY YE KY+ Sbjct: 187 LDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSFDADFYDYETKYT 246 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + +PA+IP ++ + ++ A A +A+ C G++R DF + + ++F E+N PG Sbjct: 247 EGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVNTMPG 306 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T S++P++ AG S+ EL+ +VE A R Sbjct: 307 FTTTSMYPKLFEAAGLSYSELVTRLVELALEER 339 >gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 365 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 53/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A++ GG S+E EVSL S K A AL+ F I + + Sbjct: 7 VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66 Query: 45 --------------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 VL LK D+AF +LHG GEDG +Q + +++++P Sbjct: 67 DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134 + G+ +SA MDK K++++ +P + + + P+ IKP Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--- 191 GSS+G+ IK + + L + ++L E+++ G E+ C VMG Sbjct: 187 AGSSVGVHKIKTAEDFVVKLKDAF--QFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P+ +FYSYE KY N +PA++ + K VQ++A +QA+GC G++R DF Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 P + +++ EIN PG T +S++P+M +G S+++L+ +++ Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQL 348 >gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 318 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ + Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA] Length = 299 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 158/299 (52%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGGISSEREVSL+SG + + ++V + +D+ ++ D A LHG Sbjct: 3 VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQA+LE L IPY+ L+S+L MDK +K ++ + G+ + + Sbjct: 63 KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P IKP GGSS+ I K + + + + W ++++IE+++ G E+ Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKW--DNEVMIEEFIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V + + K+DFY YE KYS+ + H + DI+ EV+++A ++A Sbjct: 181 TCPV-FENEMFPVLAIKAKTDFYDYEQKYSANGAEHYA-INLEKDIHSEVEKMALDTYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ E + ++E + Sbjct: 239 LKCSVYARIDMIITEE-GVPYVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIEHS 296 >gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 302 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ + +L +K D A LH Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 62 GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +KP GGSS+ + K + I + + ++++IE +V G E Sbjct: 122 DYEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAV--MEGLKYDEEVIIESFVKGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296 >gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103] gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103] Length = 305 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ER+VSL SG A + L +AG ID L L + F LHG Sbjct: 4 VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +QA+LE L++PYT SG++ASA++MDK+R+K + G+P + + R M S Sbjct: 64 RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS+GI + + + L ++ H D +L+E + Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAAL--EEAFRHDDNVLVEAF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T G++GD L S+FY YE KY S ++ + PA + + E+Q+L Sbjct: 182 LSGEEYTVGILGDQILPAI-KIKTASEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + A +A+GC G R D + D LE N PGMT S+ P A AG +F +L++ Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299 Query: 292 MVEDA 296 ++E A Sbjct: 300 ILELA 304 >gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92] Length = 315 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55 +AV+ GG SSER VSL SG A AL AG ID+ + L D AF Sbjct: 16 VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113 +LHG GEDG +Q L++L PYT SG+ ASA+ MDK+R+K + +P P I Sbjct: 76 LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + + P ++KP GSS+G+ + + + L ++ + ++ E ++ Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAA--EYDRTVIAESWMS 193 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T ++ +L ++ + Y ++ KY + ++ + + + E++RLA Sbjct: 194 GGEYTVAILDGQALPPIQLITDHAF-YDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+GCRG R D + D LE+N PGMT S+ P A AG SF EL++ ++ Sbjct: 253 AFSAVGCRGWGRVDAMRDECGN-FQLLEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311 Query: 294 EDA 296 A Sbjct: 312 RTA 314 >gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 302 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++MGGISSEREVSL SG++ + ++ ++VS+I ++ + +L +K D A LH Sbjct: 3 VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIIN-NKRDILEKVKGLDFALLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116 G FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I VN Sbjct: 62 GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEI 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P +KP GGSS+ + K + I + + ++++IE +V G E Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAV--MEGLKYDEEVIIESFVKGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum Ice1] Length = 366 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E EVSL+S ++ AL+ F V I +DR L Sbjct: 6 IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG GEDG +Q + E +PY Sbjct: 66 YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPL 133 G+LASA MDK K + + +P P ++V R +S + P +KP Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+GI + + ++ + V IE++ + V Sbjct: 186 NMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 VP +FY Y+ KY++ +S ++PA I Q +A A +AI G+SR DFL D Sbjct: 246 VPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLDKN 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 S +V+ EIN PG T +S++P++ G + ELL +V+ Sbjct: 306 SGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDL 347 >gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2] gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 52/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S E EVSL+S + A++ +++ I + ++ Sbjct: 6 IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65 Query: 45 ----VLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +LAH K L F VLHG FGEDG +Q + E+ IPY S Sbjct: 66 GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPL 133 G+L SAL MDK R K V + G+P P I + + + +H + P +KP Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + L + + +L++EQ + G E+ DA + Sbjct: 186 NLGSSVGISKARNREELIQAL--QLAAEYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 304 E-GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346 >gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002] Length = 318 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVS++SG+ L+D G D L AFNVLHG Sbjct: 12 VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R Sbjct: 72 GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ +I +K + + + + +L+E+ ++G Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAI--AHAAKFDTIVLVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + + VP +FY Y+ KY S + +++P + +Q LA A Sbjct: 190 GGEYTACIAGDLDLPVILIVPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +GCR R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FEVLGCRDWGRADFMLDGEGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYEELIMTVL 307 >gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3] Length = 313 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+S+EREVSL SG L +AG D L AFN LHG Sbjct: 12 VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERPLAALKDEGYVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT +G+L SAL +DK R+K V G+P P +V + Sbjct: 72 GYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ VIK + L + H +L+E+ ++G Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVA--VIKVKDAAALPAALDEAARHDKIVLVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P I EV+RLA A Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1] Length = 292 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 165/293 (56%), Gaps = 5/293 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A++ GG S E E+S S ++ AL+ G +V ++++ + + L LA PD+AF LHG Sbjct: 3 VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG VQ +LE++ IPYT G+ SA+++DK +K+++ S G+ V I V R Sbjct: 63 SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFRGQEIP 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++KP + GSS+G+ ++K + + ++ + + LIE++++G E+T G Sbjct: 123 EPA-ELPCIVKPARVGSSVGLSLVKSQEEFERAVNEALTV--DAKALIEEFIEGREITVG 179 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L EI P Y YE KYS + +V+PA++ + + RLA A++ + C Sbjct: 180 VLNGRPLPPVEILTPGE-LYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKVLEC 238 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RG R DF D LEIN PG+T S+ P+ A AG F EL+ M+ Sbjct: 239 RGAVRVDFRLDKY-NSPVLLEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290 >gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528] Length = 296 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSEREVSL+SGK + L+ ++V I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG +Q++LE ++IPY+ G L SA+ MDK SK+V+ S + I + Sbjct: 63 KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D I P V+KP GGSS+ ++KK + I ++ + ++ +++IE+Y+ G E+ Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNV--KLALDYDTEVVIEKYIQGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ +L V P ++F+ Y KY+ S ++ ++ + ++V+++ + Sbjct: 181 TCCMLKGKTLPVI-AIKPNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C+ +R D + + + LE+N PG+T S+FP+ A SF +LL +++ Sbjct: 239 LKCKSYARVDIIV--ENGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLLDKVIQ 293 >gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 313 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 162/307 (52%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AV++GG S+E +S +G A A+AL++ G+K +++ + + L K D+ FN LH Sbjct: 10 IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q E+ IPYT G++ASA+ M+K+ SK + G+P P Sbjct: 70 GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAPFAYYFAAQSP 129 Query: 120 ------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + S P VIK GSS+G +++++ ++P + ++ ++ + ++ EQ++D Sbjct: 130 AAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKEAF--SYSNSIIAEQFID 187 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM D + V V + Y Y KY+ + H+ PA + +++Q LA Sbjct: 188 GDEFTVAVMDDMAFPVI-QIVSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLALQ 246 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G++R D + D + F LEIN PGMT S+ P+ A G SF +L ++ Sbjct: 247 VFHLCHASGVARVDMMTDAA-GRPFVLEINTVPGMTETSLVPDAARAMGMSFADLCEKIL 305 Query: 294 EDASCLR 300 ++A + Sbjct: 306 QEACTGK 312 >gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris str. 8004] gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris] Length = 318 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78 Query: 61 NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + I P ++KP GSS+G+ + + + + + + LL+EQ ++ Sbjct: 139 AQQIHAAAEQIGLPVIVKPANEGSSVGVSRVFDQAQLDEAV--TLAARYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + Q Sbjct: 197 GDELTVAVLGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGDAEAQIGQLALDA 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A GC G R D + D + +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 256 F-RAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEALVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231] Length = 315 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 8/295 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL SG AL G + ID D L D AF LHG Sbjct: 17 VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLGALGE--FDRAFIALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118 GEDG++Q LE++ +PYT +G+L SAL MDK+R+K V + G+P + ++ Sbjct: 75 RGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPTPAFLRLDSEAALD 134 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GSSLG+ + ++ + + ++ E+++DG E T Sbjct: 135 RVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEA--WRKACRYDREVFAERWIDGQEYT 192 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++G+ +L V FY ++ KY + + P + + LA A +A+ Sbjct: 193 VSLLGEQALPVI-RIESAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAAAAFEAV 251 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G R D L D + LE+N PGMT S+ P A AG EL+ ++ Sbjct: 252 GGSGWGRVDLLRDAE-GVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDELVWRIL 305 >gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +K GSS+G+ +K + + + + +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAI--HEALKFDSIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ P +FY Y KY S N+ +V+PA + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVPALND-ERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D K +E+N PGMT SIFP+ AA G SF +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGE-GKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213] Length = 303 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A +AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +K GSS+G+ +K + + + + +L+E+++ G E Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAI--HEALKFDSIVLVEEFLAGNE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ P +FY Y KY S N+ +V+PA + EV +L A+ Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVPALND-ERQAEVAKLVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D K +E+N PGMT SIFP+ AA G SF +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGE-GKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 314 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 158/293 (53%), Gaps = 6/293 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 GG S+EREVSL SG A ++L +G D L L PD F +HG GE Sbjct: 22 YGGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGE 81 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123 DG +Q LELL IPYT SG+LASAL MDK R+KQ+ + G+P S+++ + Sbjct: 82 DGSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEGEPDWDAVIE 141 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++KP+ GS++GI +++ ++ + + ++ E++V G E T ++ Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAA--HAEASRFDSAIMAERFVQGEEYTVSLL 199 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 GD L + VP S FY YE KY S + ++LP + + + + + A +AIG RG Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R D + D + + LE+N PGMT S+ P+ AA+AG F L+L +++ Sbjct: 259 WGRVDVMRDAQ-GRFWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILDT 310 >gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454] gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica HKI 454] Length = 315 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSER+VSL SG+ L DAG D L AF LHG Sbjct: 14 VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114 +GE+G +Q L+ I YT G+L SAL MDK R+K + G+P P + Sbjct: 74 GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K ++P L + + H +L+E+ +DG Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHAL--AQAARHDPVVLVEKSIDG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + + VP +FY Y KY + ++ +++P + + + LA A Sbjct: 192 GGEYTACIAGSLPLPLIRIVPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARRA 251 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + C R+DF+ D ++LE+N PGMT S+ P+ A G S+ ELL+ ++ Sbjct: 252 FEVLACTAWGRADFMLD-SDGNPYFLEVNTSPGMTDHSLPPKAARAVGISYSELLVNVL 309 >gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str. 306] Length = 318 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + G EDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + ++ + LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIADDTQYLCPGL-EGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 308 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 161/301 (53%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SSEREVSL +G ACA AL G V +DVD V L + ++AF LHG Sbjct: 9 VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 +GEDG +Q +LE + IPYT SG+LASA+ MDK SK + S G+ V + R Sbjct: 69 RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP GSS+G+ ++ + + + +++E+YV G E Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLVNAAAELGPA--CRDAAGYAGDVIVERYVKGTE 186 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ +L VP + FY Y KY++ + + PA+IP + V A AH+ Sbjct: 187 VDVAVLEGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IGC G++R DF+ + LE+N PGMT S+ P++AA G SF +L +++ A Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304 Query: 297 S 297 + Sbjct: 305 A 305 >gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 353 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 5 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 65 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 125 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD + + Sbjct: 185 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 242 Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 243 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S +V + EIN PG T +S++P + G ELL +++ A Sbjct: 303 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 351 >gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S E EVSL+S + L+ + + I + + + Sbjct: 7 IGVIYGGRSCEHEVSLASAVSVVRYLDTEKYDIIPIVIMKDGAWLWNVEPGQLLQASSDP 66 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 A + DL F VLHG +GEDG +Q + E Sbjct: 67 ELAAALASAPVVSLATDTQSRQFFALQNKQPLPADGRLDLLFPVLHGPYGEDGTIQGLFE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLI 124 + IPY G+L SA+ MDK K + + G+PV S++ F + + Sbjct: 127 MANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSLVYRHFQWKRDPEGLLNEVEQRL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 S P +KP GSS+G+ + Q + + ++ +++ + Sbjct: 187 SYPCFVKPANLGSSVGVSNARNRQEMARAISEAFTYDRKVIIEQGLECREFSCAILGNEY 246 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + +P +F YE KY + V+P+ +P + +E++ +A A+QA+ G+S Sbjct: 247 PLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLPAETARELREMALRAYQALDLSGLS 306 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF D + + E+N PG T +S++P++ A +G S+ ELL ++E A Sbjct: 307 RVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAASGLSYPELLDRLIELA 358 >gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca] gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39] Length = 358 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 162/344 (47%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLK 134 SA+ MDK+ K S G+P V R + S I P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI ++ Q + L ++ + ++++E V+ EL C V V Sbjct: 186 LGSSVGISKVRSRQELETAL--DAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T +S++P++ + G SF EL+ ++E A Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIELA 347 >gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107] Length = 328 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S+ERE+SL SG A +ALEDAG IDV +V + D AF +LHG Sbjct: 19 VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +QA+LE L IPYT S + +SAL+MDK+R+K + + Sbjct: 79 PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138 Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + ++KP GSS+G+ +K + + + ++ +L E+ + Sbjct: 139 RESDFVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAF--VKATDYQGSVLAERLI 196 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ +L + S Y + KY + ++ ++ P + + +E+++LA Sbjct: 197 VGAEYTVAILDGEALPPIRLETDHSF-YDFNAKYIAEDTRYICPCGLSAEKEQELKQLAL 255 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +GCRG R D + D + LE+N PGMT S+ P A G SF EL++ + Sbjct: 256 TAFNVLGCRGWGRVDVMADAQQN-FYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTI 314 Query: 293 VEDA 296 + + Sbjct: 315 LRAS 318 >gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 311 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLH 59 +A+L GG S+EREVSL SG+ +AL+ + V + D + + A K D+A +LH Sbjct: 8 VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115 G GEDG +Q +LE L IPY SG+L SA++M+K+ SKQ+ G+PV P Sbjct: 68 GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GSS+G+ +++ + + + + LIE+YV GI Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAVETGW--QYDRRCLIEKYVHGI 185 Query: 176 ELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T +P +F+ Y+ KY+ S + PA++ I + Q A Sbjct: 186 EITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQEYA 245 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQA+ C+G SR+D + +F LE N PGMT S+FP+ AA AG SF LL Sbjct: 246 RKAHQALCCKGYSRTDMIV--SGNDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDR 303 Query: 292 MVEDA 296 ++E A Sbjct: 304 LIELA 308 >gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031] Length = 369 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 163/351 (46%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG S+E E+S+ S K+ A+ + ++V I + +L Sbjct: 6 VAIIFGGRSAEHEISIISAKSIAANINTDRYRVIPIYITHDGEWLLDGIARDILNFDLAT 65 Query: 48 -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76 D+AF VLHG++GEDG +Q L+ Sbjct: 66 LLRSSSLDAAGKTLRRMTKESGQHPFDRNFTATGIDVAFLVLHGSYGEDGRIQGFLDTCA 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPP 127 IPYT G+LASA++MDK +K V+ G+ V P I + F P Sbjct: 126 IPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGITLLSSDYLADPDSFHTRIDREFEYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185 IKP GSS+GI + +PL L + + ++L+E+ + G E+ V Sbjct: 186 LFIKPANLGSSVGISKVHNPAELPLALKTACTL--DTKILVEKAIKGREIEVAVLGNAQP 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V P SDFY YE KY ++ +PA+IP + ++V+ LA A +A+GCRG+SR Sbjct: 244 EVSVCGEIEPGSDFYDYEDKYIHNSAKTFIPARIPSVLQEKVRELALRAFKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D S+ + E+N PG T +S++P++ +G F EL ++E A Sbjct: 304 IDFFVDEESKSIILNEVNTIPGFTDISMYPKLMEASGIPFPELATRLLELA 354 >gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM 19672] Length = 298 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 157/293 (53%), Gaps = 10/293 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +AVL GG+SSER+VS+ +G +AL GF +DVD S+ L KPD + LH Sbjct: 6 IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG VQ +LE + IPY G+ ASA+S DK+ +K+++ S +P Sbjct: 66 GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTADYFEYKNEQSS 125 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P V+KP + GS++G+ ++ +D+ + + + +++++E+++ G ELT Sbjct: 126 P----FYPCVVKPAREGSTIGVTIVYEDKEFIPAIEDAK--KYDNKIIVERFIKGKELTI 179 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ D L + PK FY Y KY+ + ++ + + V+++A A++ +G Sbjct: 180 SIIDDLVLPIIW-IKPKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEVVG 238 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 C G SR D ++D LEIN PGMT S+ P AA G ++ EL+ + Sbjct: 239 CEGASRVDIIYD--GDIPNVLEINTLPGMTETSLLPNAAAKYGIAYDELVEML 289 >gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047] Length = 297 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 146/299 (48%), Gaps = 10/299 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNVLH 59 MGG ++ER++SL SGKA SAL AG ID S+ L+ D FN++H Sbjct: 1 MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT 117 G GE+G + +L + +P T S + ASAL+M+K + K + +P + Sbjct: 61 GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTARFQVLSAESDW 120 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP GSS+G+ + + + + ++ + ++ E ++ G E Sbjct: 121 QQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAV--QYDQTVIAESWITGGEY 178 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++ L ++ + Y Y+ KY ++ +++P + + + +Q +A A + Sbjct: 179 TVGIIKGQPLPGIKLETAREF-YDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIALRAFDS 237 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG R D + D + LE+N PGMT S+ P AA G SF L+L ++ A Sbjct: 238 LGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQILSTA 296 >gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 304 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+YV G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYVKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++ Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255] Length = 299 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ + D+ D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P + V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGLEV--DEFVMIEKYIPG-G 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + T S F+ YE KYS + ++ K V ++ + Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149] Length = 283 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 128/288 (44%), Positives = 176/288 (61%), Gaps = 8/288 (2%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SLSSG+ACA+AL D G+ V +ID + +G L + PD N LHG +GEDG VQ +LE Sbjct: 2 SLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLEW 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + +PY+HSG+LASAL+MDK RSK+ + G+PV PS++ + H++ PPYV+KP Sbjct: 62 MGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPNN 121 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + P L + ++++E + G ELT V+GD L VT+I Sbjct: 122 EGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTTVVGDRPLTVTDIV- 176 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y Y+ KY S HV+PA IP DI+ A AH A+GCRG+SR+DF +D Sbjct: 177 -TDGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDETK 235 Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMT S+ PE AA G F +L WMVEDASC R Sbjct: 236 GAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283 >gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630] gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26] gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932] gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42] gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55] gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34] gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79] gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196] gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291] gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58] gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Clostridium difficile] gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196] gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291] Length = 299 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ + D+ D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P + V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGLEV--DEFVMIEKYIPG-G 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + T S F+ YE KYS + ++ K V ++ + Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Candidatus Cloacamonas acidaminovorans] Length = 314 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 161/312 (51%), Gaps = 20/312 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAF 55 + VL GG S EREVSL SG ASAL + G+ V +ID + + + +P L F Sbjct: 4 IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N LHG GE+G +QA L L I +T SG AS SMDK SK + + G+PV IL+ Sbjct: 64 NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123 Query: 116 F----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 + + P ++KP GSS+GI ++ + + + ++ ++H Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS-- 181 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+E+Y+ G ELT ++ + P +Y Y KY+ + + PA+I + K Sbjct: 182 VLLEEYIPGRELTVTIIDSEAY-PVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +Q A +A G G +R DF +D L K ++LE+N PGMT +S+ P A AG SF Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298 Query: 286 RELLLWMVEDAS 297 +ELL ++ A+ Sbjct: 299 QELLQKIIYIAA 310 >gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] Length = 304 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56'] Length = 345 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56 + V+MGG S ER+VSL SG A A ALE G+ V +I + + L + D AF Sbjct: 10 VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 LHG GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++ VP P V Sbjct: 70 ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129 Query: 117 TMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSSLG+ + + L + D ++E++ Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVTKAGSLEELKSALALAF--EFDDAAIVERF 187 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G E+ G++ L VPK Y YE KY+ + + +PA++P Y+ V LA Sbjct: 188 VAGTEVNVGILDGKVLGAI-EIVPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVLNLA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A QA+GC G R D L + + LE+N PGMT S+ P++A AGY F +L Sbjct: 247 ERAAQALGCTGAVRVDLLVTGGENE-YVLEVNTLPGMTQTSLLPKIAEAAGYEFGDLCEA 305 Query: 292 MVEDA 296 ++ A Sbjct: 306 ILASA 310 >gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH] gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4] gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264] gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264] Length = 312 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K L + H +++E+ ++G Sbjct: 132 ARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + E +R+A A Sbjct: 190 GGEYTACIAADLDLPLIKIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63] gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08] gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07] Length = 299 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AV+MGGISSEREVSL+SGK + L+ ++V ++ + D+ D A LH Sbjct: 3 IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116 G FGEDG +Q+ILE ++IPY+ G L S + MDK +K+++ +P P + V+ Sbjct: 63 GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P IKP GGSS+ I + + + + ++IE+Y+ G Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGLEV--DEFVMIEKYIPG-G 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + T S F+ YE KYS + ++ K V ++ + Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+ R D + + LE+N PGMT S+ P AA G + ELL ++E Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295 >gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE] gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056] gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE] gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057] gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294] gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150] gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113] Length = 308 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P I Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E T Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K++Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF EL + +++ Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 302 >gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 304 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] Length = 304 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 304 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1] Length = 321 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 146/307 (47%), Gaps = 13/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 + VL GG S EREVSL SG+A AL+ AG++ ID+ + A P DL F VLH Sbjct: 7 IVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG +QA L+L PY SG LAS L MDK SK + G+ +LV + Sbjct: 67 GSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGT 126 Query: 120 -------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++KP GGS++ V+ + + L + G L+E+++ Sbjct: 127 GDLPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGG-ALVEEFI 185 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ELT + S +P S FY Y+ KY+ S + PA++ + + + Sbjct: 186 PGRELTVAMWDSGSGPEALPAVEILPASGFYDYQAKYTDGASRYESPARLSGEEARALSE 245 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A +A+G R R+DF P + LEIN PGMT S+ P A AG + L Sbjct: 246 AAVAAWRAVGLRDYGRADFRL-PPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDFL 304 Query: 290 LWMVEDA 296 + A Sbjct: 305 SRLARRA 311 >gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158] Length = 313 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P D E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAQGNA-YFLEVNTAPGMTDHSLPPKAARAIGIGYSELVVKVL 307 >gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968] gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150] Length = 364 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 55/352 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44 +L GG S E E+SL S + + L+D + + I +D+ + + Sbjct: 8 VLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKDGLLHQHQYQDLLASKEKLPV 67 Query: 45 VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V KP D+ F ++HG EDG +Q +LEL + Y +L+SA+ Sbjct: 68 VTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSAIG 127 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141 MDK ++++ G+ +++ F + P +KP GSS+GI Sbjct: 128 MDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSVGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192 K + + + + +++L+E +V G E+ G + + Sbjct: 188 HKAKNMDELINAVEDAL--RYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFAGEIRV 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA + +Y+++++ A + C+G++R DF + Sbjct: 246 NHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVDFFVNE 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS----CLR 300 + +++ E+N PG T +S++P++ +G ++ +LL ++ A C R Sbjct: 306 KTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLLDELIRIAMVHQNCRR 357 >gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 318 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + + + + LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYLAEDTQYLCPGLEGDAE-AQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616] gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1] gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2] gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M] Length = 313 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRDDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P D +++RLA A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKRLARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAIGISYSELVVKVL 307 >gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 304 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 318 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78 Query: 61 NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + + + + LL+EQ ++ Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P + + ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCP-GLEGEAEAQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda] gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda] Length = 324 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 170/301 (56%), Gaps = 5/301 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 + +L GG+S+EREVSL S +AL G++V++IDV + + + L+ + +P FN L Sbjct: 27 VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N Sbjct: 87 GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I PYVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203 Query: 180 GVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + + EI + FY Y+ KYS + H++P +P++ +V +A ++ Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 CRG R + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323 Query: 299 L 299 Sbjct: 324 D 324 >gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3] gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 320 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 164/298 (55%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG+ AL+ G +D ++ LA D FN+LHG Sbjct: 20 VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117 + G EDG+VQ +++ +PYT S +L SALSMDK+R+KQV S G+P V Sbjct: 80 HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVTAEDV 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GSS+GI + D + + ++ + QLL+EQ V G EL Sbjct: 140 HANAAALGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVIGDEL 197 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T ++GD +L VPK +Y Y KY + ++ ++ P + ++R+A A +A Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGDAEDE-IRRIALAAFRA 255 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GCRG R D + D S + F LE+N PGMT S+ P+ A AG F EL+ ++E Sbjct: 256 AGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLEQ 313 >gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 311 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1] Length = 361 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 13 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 72 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 73 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD + + Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250 Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S +V + EIN PG T +S++P + G ELL +++ A Sbjct: 311 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359 >gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16] gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16] Length = 368 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V+ I +D+ + Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q + L + Sbjct: 66 LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V + R + P IK Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + ++ ++ ++LIE + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAF--SYDHKVLIEAAIKGREIECAVLGNDYPKAST 243 Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P+ FYSY+ KY + +PA +P D+ + +Q +A A++ + C G++R D Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V E+N PG T +S++P++ +G S+++L+ ++E A Sbjct: 304 FLTE-TGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIELA 350 >gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM 14863] Length = 366 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 50/344 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S E EVSL S + AL+ + ++V + + + + Sbjct: 9 LLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAAAG 68 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 AH P + F VLHG +GEDG +Q +LE+ +PY Sbjct: 69 GRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPYVG 128 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKP 132 G+LAS+++MDK +K + G+ V P + R + + P +KP Sbjct: 129 CGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFVKP 188 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI +K+ + + + +++ ++ + IE+ D V Sbjct: 189 ANLGSSVGITKVKRPEDLDRAMDEAARFDRRIIVEQGIDAREIEVAVLGNDDPIASVPGE 248 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P ++FY Y KY S S +PA +P D+ +E +R A +A +AI G++R DF + Sbjct: 249 ILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDFFLER 308 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++F E+N PG T +S++P++ +G + ELL +++ A Sbjct: 309 GTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQLA 352 >gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 302 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 156/299 (52%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 63 KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP GGSS+ + K + I + + ++++IE +V G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAV--MEGLKYDEEVIIESFVKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296 >gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B] gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 300 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 155/299 (51%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGGISSERE+SL SG+A +A++ + ++ I +D ++ D AF LHG Sbjct: 3 VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ++L+ L IPY+ G + SA+ MDK +K+V+ S G+ V Sbjct: 63 QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTVRAIQDID 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L I P+ +KP GGSS+ + K + + + + + +++IE+YV G E+ Sbjct: 123 YALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAV--VEALKYDTEVMIEEYVKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ P +F+ + KY + ++ ++ ++ K V+ +A A Sbjct: 181 TCSIINR-KTYPIVAIKPTGEFFDFTSKYQDNGAEEIV-VQLEENLSKTVEAMAIACWDA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + R D + + + LE+N PGMT S+ P+ A AG S+ +L+ ++E++ Sbjct: 239 LKFSAYVRVDMII--KNNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295 >gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 318 Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 8/304 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+GG+S+ER+VSL +G+A + AL G+ V +IDV R + LA K D+A+ +HG Sbjct: 18 VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV + G+P Sbjct: 78 RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P V+KP + GSS+G+ + K + + + + + LL+EQ+V G E Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAV--TDAAKYAGTLLVEQFVKGRE 195 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + GV+ D +L V E+ + + + + ++ PA +P D Y V + AHQ Sbjct: 196 VQGGVLDDEALGVIEVRAAREFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAHQ 255 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC G SRSD + VF LE N PGMT S+ P++AA G F L ++ A Sbjct: 256 ALGCSGGSRSDVIVT-DGGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLGA 314 Query: 297 SCLR 300 CL+ Sbjct: 315 -CLK 317 >gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4] Length = 303 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 147/294 (50%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ERE+SL + KA AL G+++S IDV + ++ F +HG Sbjct: 9 IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDA--EICFLCIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +Q +L IP+T S +S + DK SK + G+P P Sbjct: 67 SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPF---CVVGDGK 123 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PPYVIKP + GSS+GI + + + + +S+ + +L E + G ELT G Sbjct: 124 KIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKST--QYDHVVLAEALITGKELTVG 181 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ +L PK FY Y KY+ ST+ PA + +D VQ+ A A +GC Sbjct: 182 ILDGKAL-PVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLGC 240 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R D + + + LEIN PGMT S+FP A +G +F +L ++E Sbjct: 241 SVYGRVDIILS-DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293 >gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG SSE +VS S ++ + V + + + +L Sbjct: 13 VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGRWLLVDGVKDIEDGSWRE 72 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG VQ + EL +IPY Sbjct: 73 GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + V + + I P +KP Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + + L ++ H +L E+ + G E+ C V+GD + + Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250 Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + FY ++ KY++ S V+ ++P + ++++ A +A+ G+SR DF Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S +V + EIN PG T +S++P + G ELL +++ A Sbjct: 311 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359 >gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 302 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++MGGISSEREVSL+SG++ + ++ ++V +I ++ + +L +K D A LH Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 62 GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P +KP GGSS+ + K + I + + ++++IE ++ G E Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYDEEVIIESFIKGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 180 ITCPIFNG-EFFPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 325 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 11/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG AL G D L F LHG Sbjct: 11 VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLGELKTGGFARCFIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ LELL IPYT SG++AS++++DK+ +K+++ S +P +L+ R Sbjct: 71 RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRGGYSP 130 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSSLG + K + + + + +L EQ++ G Sbjct: 131 AQVDAIVDTLGLPLIVKPAREGSSLG--LSKVTERAAMAAAVALAEKMDADILCEQFISG 188 Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+TC A V Y Y+ KY + + +++P +P +Q+L Sbjct: 189 DEVTCPVLGTGEQARALPVIRIVAPEGNYDYQNKYFTDTTQYLVPCGLPAGEEAAIQQLV 248 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + + CRG +R+D + D +RK + LEIN PGMT S+ P A AG S+ L + Sbjct: 249 LQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYEALCVE 308 Query: 292 MVEDA 296 +++ A Sbjct: 309 VLKTA 313 >gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6] Length = 313 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307 >gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6] Length = 329 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 11/295 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+ERE+SL SG AL G D L H F LHG Sbjct: 12 VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LELL IPYT SG++ASA++MDK+ +K++ + G+P + + + Sbjct: 72 RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P ++KP + GSS+G+ + + + + S+ + +L E +++G Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSA--GYDADVLCEAFIEG 189 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELTC V+G+ + VP + Y Y+ KY + ++ P+ + ++ +E+QR+ Sbjct: 190 EELTCPVLGEGAHAVALPVIRIVPPAAGYDYQNKYFTDEVQYLCPSGLSAELEREIQRIT 249 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +++A+GCRG R+D + ++ F LE+N PGMT S+ P A +G S+ Sbjct: 250 LASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISYE 304 >gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668] gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668] Length = 312 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K L + H +++E+ ++G Sbjct: 132 ARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + E +R+A A Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC 13177] gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655] gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei MSHR346] Length = 312 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K L + H +++E+ ++G Sbjct: 132 ARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + E +R+A A Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243] gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344] gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b] gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1] gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247] gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98] gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14] gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91] gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9] gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210] gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894] gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112] gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215] gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243] gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344] gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b] gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1] gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229] gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a] gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247] gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305] gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH] gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU] gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280] gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e] gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur 52237] gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399] gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13] gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576] gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan 9] gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4] gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b] gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20] gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a] Length = 312 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K L + H +++E+ ++G Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + E +R+A A Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens] Length = 327 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 11/306 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK L+ + ++V IDV + L+ D A LHG Sbjct: 17 VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ +LE + IPY+ SG+L+S+L MDK +K+V+ + G+ + ++R Sbjct: 77 TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136 Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ P +KP GGSS+G V + D+ L + ++ +++E V G Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIG--VQRVDRQEALRAALAEAFRWDASVVVESMVTG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E+TC ++ L V I ++++ YE K S P +P D+ V+ A Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAK-YSDGGAEERPITLPSDVEARVREAALAC 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + CR +R D + + LE+N PGMT S+ P AA AG S+ ELL ++E Sbjct: 254 YRVLQCRVYARVDMIL--QDGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311 Query: 295 DASCLR 300 + R Sbjct: 312 LSLVER 317 >gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 305 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ + Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRW--DRFVMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ + P S+F+ Y ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNG-DMLPIVSIKPNSEFFDY-ASKYEEGEADEQVIELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E + Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296 Query: 298 CLR 300 R Sbjct: 297 SER 299 >gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 305 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL +GK + L+ + ++V I++ L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ L+ L IPYT SG+LAS+L MDK SK+++ G+ I+V+ + Sbjct: 63 AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W ++IEQ+++G E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRW--DRFVMIEQWIEGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ + P S+F+ Y ++P ++ ++V+ A ++A Sbjct: 181 TCPVLNG-DMLPIVSIKPNSEFFDY-ASKYEEGEADEQVIELPTELQEQVRTAALQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + + LE+N PG+T S+ P A AGYSF LL ++E + Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296 Query: 298 CLR 300 R Sbjct: 297 SER 299 >gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu] Length = 313 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG+S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAAKHDPIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + D E++R+A A Sbjct: 190 GGEYTACIAGDLDLPVIKIVPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D + ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDA-NGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] Length = 313 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307 >gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797] Length = 320 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 9/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S+E E+SL SG+ A AL G +V +D D+ F LHG Sbjct: 14 IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 +GEDG +Q+ L+ L IPY+ S L+ K SK+ V +L++ Sbjct: 74 TYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDAG 133 Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GSSLG+ ++K + +P L + + ++E + G Sbjct: 134 RIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCFH--YDSFGILESAIKGT 191 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T V+ D L + +I P + YE KY+ ++ ++ +P ++ + + + A Sbjct: 192 EWTVTVVDDQVLPLIQIQTPHEF-FDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTGVNAC 250 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+G GI R D L D ++ + LE+N PG T S+ P+ AA AG F EL Sbjct: 251 TALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQ 305 >gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 357 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 84/340 (24%), Positives = 148/340 (43%), Gaps = 44/340 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S A A AL ++V + ++ + Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGG 136 + MDK+ K + G+P V R + + + P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI ++ Q + L +++++ + +E V Sbjct: 186 SSVGIAKVRSRQELETALDNAATYDRRIIVEAGVVAREVECAVLGNDHPQASVVGEISFN 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDFY YE KY+ + ++PA + + +++Q ++ A A+ G++R DF + + + Sbjct: 246 SDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVESTGE 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345 >gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L] Length = 348 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 170/341 (49%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG+S E EVS+SS +A A+AL + ++V + + ++ VL Sbjct: 6 VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 P D+ F +LHG GEDG VQ +L+L+ +P+ SG+L SA+ Sbjct: 66 GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137 MDK+ K V + G+P + V R + + ++ PY +KP GS Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195 S+GI ++ + L +++ ++ +L++E+ V G E+ C V V Sbjct: 186 SVGIAKVRSRSELEAALDKAA--SYDRRLIVEEGVVGREVECAVLGNDHPKASVVGEITY 243 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +SDFY YE KY+ + ++PA +P D+ ++Q +A A A+ G+ R DF + +R Sbjct: 244 ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEATR 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F EIN PG T S++P++ A G SF EL+ +++ A Sbjct: 304 EIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQLA 344 >gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453] Length = 332 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSEREVSL++G+ S L+ ++V I++D L+ D+A LHG Sbjct: 3 VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT S +L+S++ MDK SK+++ G+ ++V + Sbjct: 63 KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP GGSS+G +++ + + ++ W ++IEQ++DG E+ Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQW--DRAVMIEQFIDGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ + P S+F+ Y KY + + ++P ++ K V A ++A Sbjct: 181 TCPILNG-EMLPIVSIKPNSEFFDYTSKYVEGEADEQV-IELPPELRKAVNAAAIQCYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + LE+N PG+T S+ P A AG+SF LL ++E + Sbjct: 239 LKCSVYARIDIIL--KDNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIEFSL 296 Query: 298 CLR 300 R Sbjct: 297 TER 299 >gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43] Length = 312 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG+ L DAG D + L AFN LHG Sbjct: 12 VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ + +K L + H +++E+ ++G Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + E +R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRVARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCADWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424] gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424] Length = 352 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A+AL + + + + + VL Sbjct: 6 VGLLFGGRSGEHEVSINSAKAIATALSASENATKYDILPVYIRKDGCWQAPDVAQQVLES 65 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +P D+ F +LHG GEDG +Q +L L+++PY SG+L S Sbjct: 66 AQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135 A+ MDK+ K V + G+P + ++R + S I P +KP Sbjct: 126 AVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L Q++S++ + +E + V Sbjct: 186 GSSVGIAKVRSRSELEKALDQAASYDRRIIVEAGVIAREVECAVLGNDNPKASVVGEITF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ + ++PA +P I ++Q ++ A A+ G++R DF + + Sbjct: 246 NSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYVEKTG 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P++ A G SF +L+ ++E A Sbjct: 306 EILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIELA 346 >gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis] gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583] Length = 306 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 140/283 (49%), Positives = 203/283 (71%), Gaps = 1/283 (0%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 G ACA LE G+ V ++DVD + VL L+P FN LHG FGEDG +Q ILE L+IP Sbjct: 24 GTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHGPFGEDGCIQGILEYLKIP 83 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 YTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ ++H + PPYVIKP++ GSS Sbjct: 84 YTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGAEHPMKPPYVIKPIREGSS 143 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KS 197 G++++ D+++PL + ++ W + D++++E+YV G ELTC V+GD LDV EI Sbjct: 144 FGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCAVLGDEVLDVCEIVPKECF 203 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY S S H+ PAK+ +IY+ VQR++ AHQAIGCRG+SRSDF F+ + ++ Sbjct: 204 QFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIGCRGVSRSDFRFNEETGEL 263 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 WLEIN QPGMT S+ P++A +G ++ +++ W+VEDASC+R Sbjct: 264 IWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASCMR 306 >gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5] Length = 371 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 153/340 (45%), Gaps = 50/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRS----- 41 + VL GG S+ERE+S+ +G AL G +D+ D+ Sbjct: 28 IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87 Query: 42 -------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 + +K D+ F LHG+ GEDG VQA +LL I Sbjct: 88 AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLK 134 YT +G L+SAL+MDK +K++ VP + + + + P V+K Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ + + + ++ D++++E+Y+ G E + V+ + Sbjct: 208 GGSSVGVYIVNNQKEYEDAIDGAY--SYEDEVVVEEYIRGREFSVAVVDGKAY-PIIEIA 264 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK FY Y+ KY + ++ PA+I ++ +++Q A +A+ G +R DF+ + Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMM-KEN 323 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + +L ++ Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELIR 363 >gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976] Length = 303 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ K + + + + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAI--EEALKFDSIVLVEAFLTGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L ++ P +FY Y KY S N+ +V+P + + EV +L +A+ Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVP-ALTDERQAEVAKLVKVAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 318 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78 Query: 61 NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113 + G EDG+VQ ++E IPYT S +L SALSMDK+R+KQV S G+P Sbjct: 79 HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+GI + + +L ++ + LL+EQ ++ Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAA--RYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++G+ +L VPK +Y Y KY + ++ ++ P + Q Sbjct: 197 GDELTVAILGETALPSI-RIVPKGQWYDYNAKYLADDTQYLCPGLDGDAEAQIGQLALDA 255 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +A G R R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++ Sbjct: 256 F-RAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEELVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 305 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 158/303 (52%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +G +D + L D A+ LHG Sbjct: 4 IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111 GEDG +Q +LE L IPYT SGI++SA+S+DK R+K + S +P S Sbjct: 64 KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDISQ 123 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P VIKP GSS+GI ++ + + + +++ ++IE++ Sbjct: 124 YTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHYQDLLIDSINAAFNYSSD--IIIEKF 181 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ++G E T ++ L + K+ FY Y KY ++ ++ P+++ KE++ +A Sbjct: 182 IEGREYTVSILNKKILPPV-KIITKNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNIA 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A + +GC+G R D + D K + LE+N PGMT S+ P A G SF EL+L Sbjct: 241 ETAWRTLGCKGCGRIDVILD-NKNKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELVLK 299 Query: 292 MVE 294 +++ Sbjct: 300 ILK 302 >gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL+S + + L+ ++V I + ++ +L Sbjct: 15 IGLIFGGRSGEHEVSLASANSVMANLDKDKYEVILIGITKTGAWLLGTDPTRLLASPDAQ 74 Query: 47 -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71 + D+ F V+HG +GEDG +Q + Sbjct: 75 PNSAQSDQQATTAVTLTGDPNVRRLIPLQNGTQLHDNGALDVIFPVMHGTYGEDGALQGL 134 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------H 122 LE+ +PY G+L SAL MDK + K + + +PV P + +R Sbjct: 135 LEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFLAYHRKQWKQAPETILLAVEQ 194 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181 + P ++KP GSS+G+ Q++ + Q+ + +++IE+++D EL+C V Sbjct: 195 ELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAG--EYDTKIIIERWLDVRELSCAVL 252 Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + V + Y+ KY +PA IP + KEV ++ A + Sbjct: 253 GNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIPGPLAKEVFHMSTQAFLVLDL 312 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF D +++ E+N P T S++P++ + + + +LL ++E A Sbjct: 313 SGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSASNLPYPKLLDRLIELA 368 >gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353] Length = 353 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VLMGG SSE +VSL S K ++ + V + + + L Sbjct: 6 IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134 G+LASA SMDK +K VV S GV + V R + + P +KP K Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS G+ + + + L ++ H ++L+E+ + G E+ CGV M + Sbjct: 186 AGSSQGVSKAENREELIDALNLAA--KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +FYSY+ KY++ S V+ ++P +E+++ A +A+ C G+SR DF Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G S + L+ +++ A Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLIDLA 347 >gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328] Length = 358 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 163/344 (47%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 +A+L GG S E EVS++S KA A+AL + ++V I ++++ VL Sbjct: 6 VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +P DL F +LHG GEDG VQ +L L+++PY SG+L Sbjct: 66 GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLK 134 SA+ MDK+ K S G+P V R + S I P +KP Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI ++ Q L+ ++ + ++++E V+ EL C V V Sbjct: 186 LGSSVGISKVRSRQ--ELEAALDAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 SDFY YE KY+ + ++PA I I +V+ +A A A+ G++R DF + Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V EIN PG T +S++P++ + G SF EL+ ++E A Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIELA 347 >gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF] gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii] Length = 308 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 155/299 (51%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL+GG S+ER VSL SG+A AL +G + D DRSV ++ D AF VLH Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117 G GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P I Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P +IKP+ GSS+G+ ++K + + +++ H ++ E+++ G E Sbjct: 127 DSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184 Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T + L V + P FY YE KY + + +P + K++Q L A Q Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQ 244 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G G R D + D + LE+N PGMT S+ P+ GYSF EL + ++E Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILEQ 302 >gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4] Length = 313 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307 >gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259] Length = 310 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 99/298 (33%), Positives = 155/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+ER VSL+SG A +AL G D L + D F LHG Sbjct: 13 VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSGEFDRVFIALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 +GEDG +Q LELL IPYT SG++ASA+ MDK R+K + + G+P + Sbjct: 73 RYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDFA 132 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ + P +KP + GSS+G+ + + ++ + H +L E+++DG E T Sbjct: 133 ATEARLGLPIFVKPAREGSSIGMSKVTEAGTLQAAY--EKAAEHDALVLAEKFIDGAEFT 190 Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 G++GD++L + + FY +E KY ++ + PA +P +++LA A + Sbjct: 191 VGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFRL 250 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G RG R D + D L + LE+N PGMT S+ P A AG F L + ++E Sbjct: 251 LGGRGWGRVDLMTDRLGN-PYLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILEQ 307 >gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 300 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 306 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 141/311 (45%), Positives = 207/311 (66%), Gaps = 21/311 (6%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA LE+ G++VS++DV + VL L+ Sbjct: 6 IAVLMGGFSSERSISLSS----------GAACADVLEEQGYRVSRVDVGAHIASVLEQLQ 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+AFN LHG FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS Sbjct: 56 PDIAFNALHGPFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++NRF++ H + PPYVIKP+ GSS G++++++++++P + S W + D++++E+ Sbjct: 116 RIMNRFSIGKTHPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEK 175 Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G ELTC V + + FY Y+ KY + S H+ PAK+ L+IY+ VQR Sbjct: 176 YIPGRELTCAVLGNEVLDVCEILPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQR 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ AHQAIGCRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIV 295 Query: 290 LWMVEDASCLR 300 WMVEDASC+R Sbjct: 296 QWMVEDASCMR 306 >gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305] Length = 303 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID+ L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R + Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +KP GSS+G+ +K + + + + + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P +FY Y KY S N+ +V+PA D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC 3502] gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall] gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916] gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 300 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091] Length = 343 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 46 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 105 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 165 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + +++ E+++ G E + Sbjct: 166 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 223 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 224 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 283 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340 >gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 353 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 44/338 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 V+ GG S E EV+ S A++ + V+ I + + ++ Sbjct: 8 GVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQE 67 Query: 47 ---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 A D+ F ++HG GEDG +Q + E++ PY G+LASA+ M Sbjct: 68 DTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVGM 127 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIV 143 DK+ SK + G+PV P + + P IKP+ GSS+GI Sbjct: 128 DKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGITK 187 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFY 200 + + Q+ N+ ++L+E ++D E+ C V+ + T V +FY Sbjct: 188 AHDRAELIAGVHQAL--NYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEFY 245 Query: 201 SYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 YE KY +S +PA+I +++ A A AI G+SR DF D +++ Sbjct: 246 DYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLYI 305 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 E+N PG T +S++P M + G S+ EL+ ++ A+ Sbjct: 306 NEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343 >gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 300 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KEGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58] gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14] gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275] gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis 8013] gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579] gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385] gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945] gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013] gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136] gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76] gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149] gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196] gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33] Length = 304 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 333 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 166/300 (55%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG+SSE+ +SL++G A ++LED G+ V +I VDR V + L D+AF LHG Sbjct: 6 IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116 FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++ +P + Sbjct: 66 RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KPL GSS+G+ + + + ++ +++E++V+G+E Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAA--CERAFVFDHSVVVERFVEGME 183 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ V+ D +L + + Y KY+S + +++P ++ + Y+ V A AH Sbjct: 184 VSVAVLEDRALGAV-EVASEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G SR D + P + + LE+N P + P S+ P++A AG F +L+ ++ A Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLVEAILLGA 301 >gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51] gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 52/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S E EVSL+S + A++ +++ I + ++ Sbjct: 6 IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65 Query: 45 ----VLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +LAH K L F VLHG FGEDG +Q + E+ IPY S Sbjct: 66 GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPL 133 G+L SAL MDK R K V + G+P P I + + + +H + P +KP Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + L + + +L++EQ + G E+ DA + Sbjct: 186 NLGSSVGISKARNKEELIQAL--QLAAEYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +P DFY YE KY S V+PA + ++ + +Q A A +A+ G+SR DF Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +++ EIN PG T +S++P++ +G + EL+ ++E Sbjct: 304 E-GSQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346 >gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1] gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 304 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142] gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 351 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV--------LAH 48 + +L GG S E EVS++S A A AL + + I + ++ V L Sbjct: 8 VGLLFGGRSGEHEVSINSAAAIAQALQTGDNANKYDILPIYIQKNGVWVAGDTANEVLDS 67 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 P ++ F VLHG GEDG +Q +L L+++P+ SG+L S Sbjct: 68 KAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135 A+ MDK+ K + G+P V R + S I P +KP Sbjct: 128 AVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++S++ + +E + V Sbjct: 188 GSSVGIAKVRSHSELETALDSAASYDRRIVIEAGVNARELECAVLGNDNPKASVIGEVTF 247 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + DFY YE KY+ S +PA +P I ++Q +A A + + G++R DF + + Sbjct: 248 EGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVEETE 307 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P++ G +F +L+ +V+ A Sbjct: 308 EIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348 >gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup] Length = 306 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 141/311 (45%), Positives = 206/311 (66%), Gaps = 21/311 (6%) Query: 1 MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG G ACA LE G++VS++DVD + VL L+ Sbjct: 6 IAVLMGGFSSERSVSLSS----------GAACADVLEVQGYRVSRVDVDAHIASVLEQLQ 55 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 PD+AFN LHG FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS Sbjct: 56 PDIAFNALHGPFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPS 115 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++RF + H + PPYVIKP+ GSS G+++++++++ P + + W + D+++IE+ Sbjct: 116 RIMSRFALGQTHPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEK 175 Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Y+ G ELTC V + + FY Y+ KY + S H+ PA++ L+IY+ VQR Sbjct: 176 YIPGRELTCAVLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQR 235 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 ++ AHQAIGCRG+SRSDF FD + ++ WLEIN QPGMT S+ P++A +G ++ +++ Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIV 295 Query: 290 LWMVEDASCLR 300 WMVEDASC+R Sbjct: 296 QWMVEDASCMR 306 >gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2] Length = 331 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 153/306 (50%), Gaps = 9/306 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG+S+EREVSL SG AL D + L F LHG Sbjct: 16 VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GEDG VQ LELL I YT SG++AS++++DK SK++ S G+P + Sbjct: 76 RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P ++KP + GS++G+ + + Q L ++ + ++L EQ++ G ELT Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAA--RYDPEVLCEQFIAGDELT 193 Query: 179 CGVMGDASLDVTE-----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 C V+ + V Y Y+ KY S + + P+ +P + + RLA Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGNYDYQHKYFSDATRYHCPSGLPEAQERAIGRLAEQ 253 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+GCRG +R+D + ++ F LEIN PGMT S+ P A AG S+ +L L ++ Sbjct: 254 AFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRLL 313 Query: 294 EDASCL 299 A+ Sbjct: 314 AMATLD 319 >gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVA--YDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P ++ + T Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDTDLD 127 Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +IKP+ GSS+G+ ++K + + + H ++ E+++ G E T Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAA--AIAKATAHDAVVMAEKWITGREFT 185 Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + L V + P FY YE KY + + +P + K +Q L A QA Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAFQA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G R D + D + LE+N PGMT S+ P+ A GYSF L + ++E Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILEQ 302 >gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] Length = 304 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386] Length = 305 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GGISSEREVSL SG+ L + V I ++ + + D F LHG Sbjct: 6 IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116 FGEDG +QAILE ++IPYT G+LAS+L MDK +K ++ S GV I V Sbjct: 66 KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + KP GGSS+G+ IK +Q L + +++IE+ + G+E Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKDIFTI--DKEVMIEEVLRGVE 183 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ ++ I F+ Y + + ++ E+ L A+ Sbjct: 184 ISVPIIDGKVYPTLCIEPKAGTFFDY-ASKYEVGGADEYVVEFEKELQDEINELTKTAYH 242 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G +R DF+ K + +EIN PGMT S+ P+ + G S+ ELL ++E Sbjct: 243 AVKCEGYARIDFML--KDNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298 >gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl] gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl] Length = 356 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAHLKP 51 +AV+ GG S E EVSL S A S L+ A +++ I + + ++A P Sbjct: 7 VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F VLHG +GEDG +Q +LEL PY Sbjct: 67 ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132 G+ ASA+ MDK K ++ G+PV P +LV R + + P +KP Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ ++ + L +++ ++ + IE++ + + Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAARYDRRLIVEQGIPAREIEISVLGNDEVVASIPGE 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P ++Y Y KY S ++PA + +VQ LA A QAI G++R DFL D Sbjct: 247 IIPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFLLDR 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG TP+S++P+M A +G S+ +LL +V+ A Sbjct: 307 DQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVDLA 350 >gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822] Length = 377 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS++S KA A AL +++ I + + VL Sbjct: 32 VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91 Query: 49 LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ F +LHG GEDG +Q +L L+++PY SG+L S Sbjct: 92 GKPLSTESDDSVGLWQFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 151 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKG 135 A+ MDK+ K G+P P + + R + + + P +KP Sbjct: 152 AVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPANL 211 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++S++ + +E + + Sbjct: 212 GSSVGIAKARTRSELETALDAAASYDRRIIVEAGVSAREVECAVLGNDNPKASIVGEITF 271 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ + ++PA IP I ++Q ++ A A+ G++R DF + + Sbjct: 272 NSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFFYVEKTG 331 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T S++P++ +G F +L+ +++ A Sbjct: 332 EVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQLA 372 >gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315] gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315] Length = 313 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 145/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALEEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168] Length = 373 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 64/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E EVSL S + + A + I + +S L + Sbjct: 3 IAVIYGGKSGEHEVSLVSAASIVRNINTAKHDIILIGIAKSGKWFLQNETECERVRADAH 62 Query: 50 -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F+VLHG +GEDG +Q +L++ IP Sbjct: 63 AALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGTIQGLLDMTGIP 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------------TMDSQHLIS 125 YT +SAL+MDK ++KQ+ +PV P + + + ++ Sbjct: 123 YTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQKLMRQAETEFG 182 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184 P +KP GSS+G + K+ + + ++ W D++LIE +D E+ C V G+ Sbjct: 183 YPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRW--DDKILIEPAIDAREIECSVTGNS 240 Query: 185 -----ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAI 238 + P FY Y+ KY+ N +PA + + V++ A A++ + Sbjct: 241 VSGGEVTAYTPGEIKPSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDVVRKTAVKAYETL 300 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C G+SR DF D + ++ EIN PG T +S+FP+M AG S+ +L+ ++ Sbjct: 301 DCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYADLVELII 355 >gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300] Length = 339 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 141/333 (42%), Gaps = 35/333 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S E EVSL S ++ +AL F V+ + + + Sbjct: 7 LLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAVRG 66 Query: 46 --------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS- 96 + D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ + Sbjct: 67 GDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 97 -------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+ + + P +KP GSS+GI + Sbjct: 127 QVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGPGE 186 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207 + L + S L EL G+ ++DFY YE KY+ Sbjct: 187 LERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFYDYETKYT 246 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 +T +PA +P +I + V+ LA A + + C G++R DF + + ++F E+N PG Sbjct: 247 EGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVNTMPG 306 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T S++P++ AG S+ EL+ +VE A R Sbjct: 307 FTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339 >gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065] Length = 300 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88] gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 358 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 36/329 (10%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------- 44 + GG S+E EVS +S + + +++ I + + Sbjct: 26 VFGGQSTEHEVSRNSVTSILKNINRDKYEICPIGITKEGKWFQYTGDINNIKNGQWEKDN 85 Query: 45 ---------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 VL + + +L F VLHG +GEDG +Q + +L+ +P G+L+SAL MDK+ Sbjct: 86 KNKLENGYNVLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIY 145 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKD 147 +K V+ + ++VN+F + + IKP GSS+GI Sbjct: 146 TKYVLENFKFKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNK 205 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + L ++ + + IE+ D V +P +FY YE KY Sbjct: 206 EELLKGLEEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAKYQ 265 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + NS ++PA I +E++ LA ++ +GC G++R DFL D S +V++ E+N PG Sbjct: 266 NENSELLIPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTLPG 325 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P++ +G S+ L+ ++E A Sbjct: 326 FTKISMYPKLWEASGKSYSALIDELIELA 354 >gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147] gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786] Length = 312 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 144/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFARAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V G+P P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + H +++E+ ++G Sbjct: 132 ARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P + ++R+A A Sbjct: 190 GGEYTACIAADLDLPLIKIVPAGEFYDYHAKYIADDTQYLIPCGLDAAKEAALKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307 >gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4] Length = 375 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 154/348 (44%), Gaps = 57/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S E EVSL S + A++ + V I +++ + Sbjct: 7 VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66 Query: 46 ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 K D+ F VLHG FGEDG +Q + EL ++ Y SG+L S Sbjct: 67 QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 A MDK K++ ++ +P+ + + R + + P +KP GSS Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-------ELTCGVMGDASLDVTE 191 +GI + +P + +++ +++IEQ V G E+ V Sbjct: 187 VGISKVHDRSELPKAMDEAA--RFDRKIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244 Query: 192 IAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FY Y KY + S +PAKI K+++ +A A +A C G++R DFL Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304 Query: 251 DPLSR-----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DP S K++ EIN PG T +S++P++ G S+REL+ ++ Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELIDRLI 352 >gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] Length = 304 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491] gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491] gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala ligase) [Neisseria meningitidis WUE 2594] Length = 304 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHFQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTA 301 >gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015] Length = 310 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 7/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG ++EREVSL SG AC +ALE + + + +D L L+ D A NV+HG Sbjct: 14 VVLLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118 GEDG +QA L L IP + S +L SAL+MDK+R+K + + G+P + + Sbjct: 74 RGGEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEAL 133 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P ++KP GSS+G+ + + + ++ + ++ EQ++ G E T Sbjct: 134 SVAEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQY---GEVFAEQWIVGKEYT 190 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++GD +L + + DFY Y KY ++ + P + + +Q LA A + Sbjct: 191 AAILGDETLPLVRLET-DQDFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTV 249 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G G R D + D + + +E+N PGMT S+ P A AG SF EL+L ++ A Sbjct: 250 GASGWGRVDLMVDEA-GQPWLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTA 306 >gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926] Length = 284 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 102/295 (34%), Positives = 161/295 (54%), Gaps = 14/295 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AV MGG+SSERE+SL +GKA +L G+ +D+ + + DLA+ LH Sbjct: 3 IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QA+L++++ PYT SG+ SA++MDK +K + I + + D Sbjct: 63 GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKI------IAEKAGIRIPKSYRD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 +IS P V+KP GSS+G+ + + + G LLIE++V G ELT Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNSIEEVEKA----EKNLMGKSLLIEEFVSGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ PKS Y ++ KY+ + + PAK+ +Y+E + HQ +G Sbjct: 173 GVLNG-EPLGVLKISPKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQELG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+SRSDF+ K+++LE+N PGMT S+ P++A GY+F +L+ +++ Sbjct: 232 LSGVSRSDFIL--KDDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284 >gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 303 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + + +P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ +K + + + + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAV--EEALKFDSIVLVEAFLAGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P+ +FY Y KY S N+ +++P + D EV L A++ Sbjct: 186 YSVPVLDGQVLPAV-QIIPEGEFYDYHAKYISDNTQYLVP-ALSDDRQAEVAELVKAAYE 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDA-NGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 304 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9] Length = 357 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 86/340 (25%), Positives = 149/340 (43%), Gaps = 44/340 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S A A AL +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + DL F +LHG GEDG +Q +L L+++P+ SG+L SA Sbjct: 66 GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGG 136 + MDK+ K + G+P V R + + + P +KP G Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI ++ Q + L +++++ + +E A V Sbjct: 186 SSVGIAKVRSRQQLETALDSAATYDRRIIVEAGVVAREVECAVLGNDHAQASVVGEITFN 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDFY YE KY+ + ++PA +P I +++Q ++ A A+ G++R DF + + + Sbjct: 246 SDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVESTGE 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345 >gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] Length = 304 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 326 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL SG+A +AL AG D L K D +LHG Sbjct: 28 VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQLHELVEQKFDRVLIMLHG 87 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P Sbjct: 88 RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 147 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + ++KP + GSS+G+ + + + ++ + D++L+EQ++ G Sbjct: 148 ANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAI--QQAFEYDDKVLLEQFIQG 205 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ +L ++ P+ Y YE KY S ++ + P+ + + ++ +LA A Sbjct: 206 SEYTVSLLNGIALPSISMSTPRDF-YDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALNA 264 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R DF+ D + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 265 FDAVAGTGWGRIDFMQDAQ-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVLA 323 Query: 295 DA 296 A Sbjct: 324 TA 325 >gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC 15579] Length = 300 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KEGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293 >gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126] Length = 327 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 154/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G D L L D A +LHG Sbjct: 22 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114 GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P Sbjct: 82 RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++ + +Q+L+EQY+DG Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAI--QDAFKYDNQVLLEQYIDG 199 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + Y Y KY + + P+ + + ++ +LA A Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHTF-YDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L ++ Sbjct: 259 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 317 Query: 295 DA 296 + Sbjct: 318 TS 319 >gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T] gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T] Length = 304 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A +AL+ AG D VL + AF LHG Sbjct: 8 VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LEL+ IPYT SG++ASALSMDK R+K V S G+P ++ + Sbjct: 68 RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPTPRYAILEHDSDWD 127 Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP+ GSS+G + + + + + ++ E+++ G ELT Sbjct: 128 AVVAELGLPIFVKPVHEGSSMGATKVVEAGQLRAA--WELAARYDRLVIAEEFICGAELT 185 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D +L + I P Y Y+ KY + ++ + P+ +P E+Q + + + Sbjct: 186 APFLEDRALPLVRIVAP-GGNYDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMKCARVL 244 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG R+D + + + LE+N PGMT S+ P A AG F L L +++ A Sbjct: 245 GCRGWGRADLILTE-DGRPYLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEILQGA 301 >gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 305 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 148/299 (49%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG SSER+VS+ SG + +LE G +V D+ R L LK DL F LHG Sbjct: 5 IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG VQ ++EL +PYT S SA+ DK + ++V + D Sbjct: 65 KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLW--KKVISEKDL 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P VIKP + GSS+G+ + ++ + D LL+E+Y+DG E+T Sbjct: 123 EGWKIFPCVIKPTREGSSIGVFICDDASTLIN--RTRLLLDVYDSLLLEEYIDGREITVS 180 Query: 181 VMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ PK FY YE KY+ + V+PA I + + + ++ Sbjct: 181 IIDSREGIKVLPVLEIKPKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVYKL 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR +R D + ++LE+N PGMT +S P A AG +F +++L ++E A Sbjct: 241 LGCRDFARVDGIL--KGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIEAA 297 >gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2] Length = 377 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E EVS S + + ++ + F VS + + + V Sbjct: 7 VMVIFGGQSTEHEVSRFSATSIINNMDRSKFDVSFVGITKEGRWVPYNGPVEKIASGEWE 66 Query: 46 --------------------------------------LAHLKPDLAFNVLHGNFGEDGL 67 + D+ F VLHG GEDG Sbjct: 67 EIAINEMVKGIPYRDNIINAIVSRGASSEAVIKNENKEINGGPIDVVFPVLHGCNGEDGT 126 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------- 119 +Q + E+ IPY SG+L SAL MDK+ +K V GVP + R + Sbjct: 127 IQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYLFFTRKEIKENSDRVAD 186 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P IKP GSS+G+ + + L ++ + ++LIE++++G E+ Sbjct: 187 AIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEALNFAA--KYDRKVLIEEFINGREVE 244 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 C V + +P ++FY Y KY +S V+PA +P D +++ A A + Sbjct: 245 CAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLPADTILKIREYAVKAFK 304 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G+SR DF + +++ EIN PG T +S++P + +G + EL+ +++ A Sbjct: 305 ALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEASGIPYSELIERLIDLA 364 >gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4] Length = 358 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 157/341 (46%), Gaps = 46/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50 + +L GG S+E +VSL + KA AL++ + + I + V + + K Sbjct: 5 ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64 Query: 51 --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ +LHG GEDG VQ +LELL +PY +G+ Sbjct: 65 AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LASA MDK+ K + + G+P + + T D + + P +KP Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++ ++ + IEL + V +P Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDRKIIIEQGVKAREIELGVLGNDEPECSVPGEILP 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K DFY Y+ KY ++ ++PA+IP IY++++R+A + +A+ C G+ R+DF Sbjct: 245 KKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE-DG 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG TP S+FP + ++G + EL+ +V+ A Sbjct: 304 GIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQLA 344 >gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] Length = 304 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 304 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTSMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5] Length = 303 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 156/300 (52%), Gaps = 12/300 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +LMGG S EREVS+ SG ALE+ G+ V +D + + D+ +N LHG Sbjct: 5 VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDP-QEPRWQEKLIGVDMVYNTLHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ L++ IPYT +G+L SA+SMDK+ +K++ +CG+P ++V Sbjct: 64 PVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIPTPAYLVVTADMAHG 123 Query: 121 QHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + S P V+K + GSS+G+ ++ L + Q+++E+Y+ G Sbjct: 124 AVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQL--DSQVMVEEYIQG 181 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 ELT G + D +L + V + FY Y KY+ + + +P K+ V + Sbjct: 182 YELTSGFLDDLALPLV-GIVAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRVVDYSRRL 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G RG R D++ ++LE+N PGMT S+ P+ A AG SF +++ ++E Sbjct: 241 CRALGLRGAFRVDYML--KDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFADVVAKVLE 298 >gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +EIN PGMT S+ P+ A G + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 RVR 306 >gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGIS+EREVSL+SG+ LE ++ I +D+ ++ D AF LHG Sbjct: 3 IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K + I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 309 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S ER +SL SG ++L +G ID L H K AF LHG Sbjct: 8 IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q++L+ L IP+T S L SA+S++K ++K + S +PV P + +N+ + Sbjct: 68 RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127 Query: 121 QHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L P ++KP + GSS+GI ++ +++ +++ + +LIE++ Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKA--CKTAFIFDNSILIEKF 185 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T + + P++ FY+Y KY S +T+ P+ + E++++ Sbjct: 186 IYGEEYTISI-LGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A I G R D + D K + LE N PGMT S+FP A AG S++ L+ Sbjct: 245 LTAWNIIDGTGWGRVDVIMD-YKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303 Query: 292 MVEDA 296 ++E A Sbjct: 304 ILELA 308 >gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59 + VL GG+S ER +SL SG +ALE G+ V D+ LA L+ DL F LH Sbjct: 8 ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +Q++LEL I Y S L SA+ +K + +++S+ + Sbjct: 68 GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLLSNTITMPRW--KTITSEEE 125 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P VIKP GSS+G+ + + + + L++E+Y+ G ELT Sbjct: 126 LEGWKHFPAVIKPANEGSSIGVYICDTFEELQNK--TTKVLKEYKTLILEEYIKGRELTI 183 Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ V PK FY YE KY++ + ++PA I + +E+++L+ Sbjct: 184 SIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRIFT 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCR +R D + + ++LE+N PG+T +S P A AG F EL+ +V++A Sbjct: 244 ALGCRHFARIDGIL--KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEA 301 >gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054] gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424] Length = 313 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] Length = 311 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 188 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KVR 306 >gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma proteobacterium HTCC2148] Length = 307 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+ + AL + V +D V D AFN LHG Sbjct: 11 IAVLLGGTSAERDVSLLSGRTVSDALRGLDYSVRDVDPA-DADWVAQLQGVDYAFNALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q LE L I YT SG+L SAL+MDK RSKQ+ G+ +++ T Sbjct: 70 PGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADTDWQ 129 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + +KP GSS+G+ +S+ +++++ G ++ E++++G E T Sbjct: 130 AVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEYTV 187 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++GD +L + +++FY Y+ KY S ++++ P+ + +V +A A +++G Sbjct: 188 AILGDEALPSIRMVT-ENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRSLG 246 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C G R D + D + F LE+N PGMT S+ P A AG L+ ++ AS Sbjct: 247 CAGWGRVDTMRD-SDGRFFVLEVNTIPGMTSHSLVPMAARQAGMEVPALVERILTLAS 303 >gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106] Length = 364 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL------------ 44 + +L GG S E EVS+ S +A A AL+ +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65 Query: 45 ----VLAHLK-------------PD--------LAFNVLHGNFGEDGLVQAILELLEIPY 79 L K PD + F +LHG GEDG +Q +L L+++P+ Sbjct: 66 GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------------LISPP 127 SG+L SA+ MDK+ K + S G+ +V R + S + P Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185 +KP GSS+GI ++ + L ++ ++ ++++E V+ EL C V Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAA--SYDRRIIVEAGVEARELECAVLGNDTP 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 SDFY YE KY++ + +PAK+ +I +V+ +A A A+ G++R Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + +V EIN PG T S++P++ A +G SF EL+ +V+ A Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQLA 354 >gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20] gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 303 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL+SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + + G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP GSS+G+ +K + + + + +L+E ++ G E Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAV--EEALKFDSIVLVEAFLAGKE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P+ +FY Y KY S N+ +++P + D EV L A++ Sbjct: 186 YSVPVLDGQVLPAV-QIIPEGEFYDYHAKYISDNTQYLVP-ALSDDRQAEVAELVKAAYE 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D + +E+N PGMT SIFP+ AA G F +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 318 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL+SG AL G +D ++ L + D FNVLHG Sbjct: 19 VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78 Query: 61 NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + GEDG+VQ ++E +PYT S +L SALSMDK+R+KQV S G+ Sbjct: 79 HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P ++KP GSS+G+ + + + + + + LL+EQ ++ Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT V+GD +L VPK +Y Y KY + ++ ++ P ++++LA Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYLAEDTQYLCPGLEGDAE-AQIRQLALD 254 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GCRG R D + D S +++ LE+N PGMT S+ P+ A G F L+ ++ Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314 Query: 294 ED 295 E Sbjct: 315 EQ 316 >gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153] Length = 304 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG G R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 302 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 10/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ + +L +K D A LH Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIIN-NKRDILEKVKGLDFALLALH 61 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116 G FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 62 GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 D I P +KP GGSS+ + K + I + + ++++IE +V G E Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYYEEVIIESFVKGRE 179 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6] Length = 365 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 62/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GG S E EVSL S +A +AL+ ++V + + + + Sbjct: 5 VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64 Query: 46 ----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAI 71 L D+ F VLHG GEDG VQ + Sbjct: 65 TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------- 123 LEL + Y G+ ASA+ MDK K ++ G+P+ P +LV R Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ P +KP GSS+G+ K L + + + ++++EQ + E+ V+ Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRD--GLAEALAEAARYDRRIVVEQGIPAREIEVSVL 242 Query: 183 GDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 G+ +V+ VP ++Y Y KY S +PA I D+ +EV+RLA A Q+I Sbjct: 243 GNDEPEVSIPGEVVPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSIDG 302 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DFL D S +++ E+N PG TP+S++ +M A +G + LL ++ A Sbjct: 303 AGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLLDRLISLA 358 >gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 304 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49] Length = 313 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L + AF LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDRIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G S+ EL++ ++ Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSVGISYSELVVKVL 307 >gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_06A21] Length = 359 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 153/347 (44%), Gaps = 49/347 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------- 47 +L GG S+E EVS+ S ++ +A++ ++ + + R +LA Sbjct: 3 LLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVDDM 62 Query: 48 ------------HLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 LK D+ F +LHG FGEDG +Q +LEL+ + Y +G Sbjct: 63 SLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 + AS++ MDK +K + ++ G+ ++ R + + P +KP Sbjct: 123 VAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ K S+ L ++ ++ + + +E + Sbjct: 183 MGSSVGVSKAKDAASLTKALDIAAQYDVKMLVEESVEDCHEVECAVLGNDSPRASIIGEI 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P +DFY Y+ KY S ++PA + + VQ +A A Q+I C G++R DF Sbjct: 243 IPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFFVRRA 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +F EIN PG TP+S++P + +G ++ EL+ +++ A R Sbjct: 303 DDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQLAVERR 349 >gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii] Length = 307 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 14/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF---NV 57 +A+LMGG SER+VSL + ++ A AL G V ++DV V P F N+ Sbjct: 9 IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEV-----PGDVFIAMNL 63 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 +HG FGEDG +Q+ILE I YT +G+ +S ++ DK+ SK+ + GVP S Sbjct: 64 IHGTFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRSQTYPLDG 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I P V+KP + GSS+G+ + + L + + H LIE YV G EL Sbjct: 124 SQPL-AIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGHD--TLIEDYVAGKEL 180 Query: 178 TCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T GV+GD L + I Y + + + PA + ++ K VQ A A Sbjct: 181 TVGVLGDQVLPIIHIEPVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q+ G R D + + F LE+N PGMT S+ P+ A G F +L ++E Sbjct: 241 FQSCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIE 300 Query: 295 DASCLR 300 + R Sbjct: 301 LSLAAR 306 >gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 304 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + + F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36] gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36] Length = 312 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 159/302 (52%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL SG A + L AG +D L AF LHG Sbjct: 14 VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG++Q LE L IPYT S +L +AL+MDK+R+KQ+ S G+P +V + Sbjct: 74 RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133 Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +IKP K GSS+G+ + + + ++++ + +++L+EQ+++G Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGMAKVHNVAELETAV--TAAFAYDNEILVEQWIEG 191 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++GD L V ++ P + Y Y+ KY S + ++ PA I + +++Q A A Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNTF-YDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R D + D + LE+N PGMT S+ P A AGY+F L+ ++ Sbjct: 251 FHAVAAEGWGRVDAMLDAQ-GQFQLLEVNTVPGMTEKSLVPMAANAAGYNFDSLVSKVLA 309 Query: 295 DA 296 A Sbjct: 310 LA 311 >gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 318 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 154/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG S+EREVSL SG+A SAL AG D S L K D +LHG Sbjct: 20 VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG +Q L+ + +PYT +G+L SAL MDK+RSKQV S G+P Sbjct: 80 RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + ++KP + GSS+G+ + Q L ++ + D++L+EQ++ G Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGMAKVSNAQ--QLAAAIQQAFEYDDKVLLEQFIQG 197 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T ++ ++ ++ P+ Y YE KY S + + P+ +P + + RLA A Sbjct: 198 SEYTVSLLNGEAMPSISMSTPRDF-YDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ G R DF+ D L + + LE N PGMT S+ P A AG SF +L L ++ Sbjct: 257 FDAVAGSGWGRVDFMQDML-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315 Query: 295 DA 296 A Sbjct: 316 TA 317 >gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli] Length = 365 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 49/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +AVL GG S+E E+SL S A L+ F + I +D+ Sbjct: 11 VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70 Query: 43 -------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +V D+ F VLHG GEDG +Q +L+L++I Y + +L SA+ Sbjct: 71 ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 MDK+ SK++ + +PV P + N + I P IKP+ GGSSLG Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL------DVTEIAV 194 I IKKD + + + ++L+E+ ++ E+ V+ + + Sbjct: 191 ITKIKKDTDLENAIELVF--TYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEII 248 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P+ +FYSYE KY ++PA + ++++RLA + C G++R DF + Sbjct: 249 PRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEKR 308 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S+K+++ E+N PG T +S++P + +G ++ LL ++E A Sbjct: 309 SQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTR 354 >gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYKA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 RVR 306 >gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 154/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A +AL G D L L D A +LHG Sbjct: 17 VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLSLDVDRALIMLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114 GEDG +Q L+ L+IPYT S +L SAL+MDK+ +KQV S G+P Sbjct: 77 RGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 136 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + + + + ++ + +Q+L+EQY+DG Sbjct: 137 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAI--QDAFKYDNQVLLEQYIDG 194 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T V+ +L ++ P + Y Y KY + + P+ + + ++ +LA A Sbjct: 195 PEFTVSVIQGQALPSIRMSTPHTF-YDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 253 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 AI G R D + D R+ + LE N PGMT S+ P+ A AG +F EL+L ++ Sbjct: 254 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 312 Query: 295 DA 296 + Sbjct: 313 TS 314 >gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 361 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 ++ GG S+E VSL + A AL F + I + V Sbjct: 6 GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVKGARLTEPVSNVKMLQ 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 66 FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+LAS+ MDK+ K + + + + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPEESCEQVEQELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ ++G E+ D V Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA + + Y ++ +A A +AI G+ R+DF Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAHVTDEEYAKISEMAIKAFKAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28] gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 304 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-KQLPIVSIRHAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 306 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 161/303 (53%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + S Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P VIKP GSS+GI ++ + + + ++N+ + ++IE++ Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ L + K++FY Y KY ++ ++ P+ + +E++++ Sbjct: 183 LKGTEYTVSILNKKVLPPI-KIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A ++GC+G R D + D K + LEIN PGMT S+ P A G SF EL+L Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMAAKSIGISFDELILK 300 Query: 292 MVE 294 +++ Sbjct: 301 ILK 303 >gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555] gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016] gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555] gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 297 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 160/297 (53%), Gaps = 8/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SGK+ + ++ +++ I +D+ + D AF LHG Sbjct: 3 VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117 FGEDG++Q++ + ++IPY+ L S + MDK SK+++ S + I + Sbjct: 63 KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+ +I+K + I ++N+ ++++IE+Y++G E+ Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAA--RLAFNYDEEVMIEKYIEGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ +L + I K F+ Y KY+ S ++ + + +++ ++ + Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEISLKCWEL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C+G R D + + + LE+N PG+T S+FP+ A SF ELL +++ Sbjct: 240 FKCKGYVRVDMIL--KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQ 294 >gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3] Length = 306 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 152/309 (49%), Positives = 216/309 (69%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 +AVLMGG L SSG ACA LE G+ V+++DVD + +L L+P Sbjct: 6 IAVLMGG--------LSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPH 57 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + FN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS Sbjct: 58 IVFNALHGSFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYT 117 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++RF + S+H + PPYVIKP+ GSS GII++ D++ P + SS W H D++++E+Y+ Sbjct: 118 MSRFAIGSKHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYI 177 Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELTC V+G+ LDV EI FY+Y+ KY S S H+ PA++ L+IY++VQR++ Sbjct: 178 PGRELTCAVLGNEVLDVCEIIPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRIS 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQAIGCRGISRSDF F+ + ++ WLEIN QPGMTP S+ P++A +G ++ +++ W Sbjct: 238 LAAHQAIGCRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKW 297 Query: 292 MVEDASCLR 300 +VEDASC+R Sbjct: 298 IVEDASCMR 306 >gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 301 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18] gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18] gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190] gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399] gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902] Length = 304 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAESCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila] Length = 316 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV +LA+N++H Sbjct: 15 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH--GPDFRLPEGTELAYNIIH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + +++ Sbjct: 73 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP GSS+G+ ++++ + + + ++ HG +L+E+++ G ELT Sbjct: 133 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 190 Query: 180 GVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 G++ +L V I + Y + ++ PA +P + VQ A A++ Sbjct: 191 GILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYK 250 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + E + Sbjct: 251 AAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELS 310 >gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf] gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 300 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGIS+EREVSL+SG+ LE ++ I +D+ +V D AF LHG Sbjct: 3 IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L+IPY+ G L SA+ MDK +K+++ + + V Sbjct: 63 EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +KP GGSS+ ++K I + + + +++IE Y G E+ Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAV--ELALKYDKEVMIENYTKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M + + P ++F+ Y KY+ S V+ ++ +++K+V+ +A + Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C R D + + + LE+N PGMT S+FP+ A G SF ELL +V+ Sbjct: 239 LKCEVYVRVDMIV--KAGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293 >gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835] Length = 311 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59 +A+L+GG +EREVSL SG + AL AGF V+++DV +LA+N++H Sbjct: 10 IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH--GPDFRLPEGTELAYNIIH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG +QAILE +PYT +G +SAL +K SK+V GVP + +++ Sbjct: 68 GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP GSS+G+ ++++ + + + ++ HG +L+E+++ G ELT Sbjct: 128 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 185 Query: 180 GVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 G++ +L V I + Y + ++ PA +P + VQ A A++ Sbjct: 186 GILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYK 245 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A G R D L F LEIN PGMTP S+ P+ AA +G+ + +L + E + Sbjct: 246 AAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELS 305 >gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] Length = 304 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-KHLPIVSIRHAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365] Length = 330 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 162/299 (54%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58 + VL GG SSEREVSL SG +AL++ G++ +D S+ +L + ++ +N L Sbjct: 26 VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ + + +P T + I ASA++MDK+ SK++ S GVP ++ Sbjct: 86 HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145 Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D+ + P VIKP GSS+G+ ++++ I L ++ + +L+E+Y++G+ Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 EL+ G++ D L P S Y YE KY ++ ++P ++ + L A+ Sbjct: 204 ELSVGILADRVLGAV-EIRPTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+GC G +R+D F LE+N PGMT S+ P++AA+AG + L ++E Sbjct: 263 HALGCTGYARADLRV-QADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320 >gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755] gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+ERE+SL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R + Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +KP GSS+G+ +K + + + + + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P +FY Y KY S N+ +V+PA D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568] Length = 304 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSERE+SL SG A +AL+ G D + L AFN+LHG Sbjct: 7 VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 67 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126 Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + P +KP GSS+G++ +K + + +++ E+++ G E + Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237 C V+ L +P ++FY YE KY+ ++ + P++ + + + R A QA Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 244 IGAESCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301 >gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421] gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421] Length = 368 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG SSE EVSL S + + + I + + L + Sbjct: 3 IAIMYGGKSSEHEVSLVSATSIVRNINSL-HTIHLIGITKQGTWFLQNQDELMRIRSDEQ 61 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L+ D+ F VLHG+FGEDG +Q + E+ E+ Sbjct: 62 AVLQIHTAAENQVSIIPGGGTKGALKVGQRFLETDVIFPVLHGSFGEDGTIQGLFEMAEL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126 PY G+LAS+LSMDK ++K + + G+P+ P V + T D + + Sbjct: 122 PYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQSERDLLIQEIEKELDY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+G + K + ++ SW++ + IE + Sbjct: 182 PLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDYKILVEACIPAREIECSVTGNETCI 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +P FY YE KY+ + +PA+I D K ++ +A A++ + G +R Sbjct: 242 AYTPGEIIPSHSFYDYEAKYTDPDGAILKIPAEITDDERKTIREIAMKAYKTLDLSGFAR 301 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D ++K++ EIN PG T +S+FP+M A +G + +L+ +++ A Sbjct: 302 VDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYPDLITLLLQLA 352 >gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 161/301 (53%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S+EREVSL+SGK+ AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G++Q LE L IPYT G++ASA+++DK R+K + ++ G+P +V R + Sbjct: 68 GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +KP GSS+G+ +K + + + + +L+E+ + G E Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIPAI--EEALKFDSIVLVEENLAGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P +FY Y KY S N+ +V+PA D EV +L A+ Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D +E+N PGMT SIFP+ AA GYSF L+ ++E + Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302 Query: 297 S 297 + Sbjct: 303 A 303 >gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3] Length = 313 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKRIARRA 249 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 250 FAVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307 >gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens] gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b] Length = 364 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 149/347 (42%), Gaps = 51/347 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44 +L GG S E EVSL S + L+ + + I +D+S + + Sbjct: 8 VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67 Query: 45 VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V P ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 68 VTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141 MDK ++++ G+ L++ F + P +KP GSS+GI Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192 + + + + +++L+E+++ G E+ CG + + ++ Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA++ + +++++ A + C+G++R DF + Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLAMIH 352 >gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2] gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2] Length = 307 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG A + L + G +D L D AF LHG Sbjct: 16 VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLR--GFDAAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R Sbjct: 74 RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGRE---- 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P ++KP GSS+G+ + + L+ + +L+E +V+G E T Sbjct: 130 EAELGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAE--KFDQDVLVEAWVNGPEYTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L + P Y +E KY S ++ ++ PA + + ++ LA A + GC Sbjct: 188 VLGDEALPAIRLQTPHVF-YDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG R D + D + LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 247 RGWGRVDVMRDEQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485] Length = 362 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 48/347 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S E EVSL S A S L+ + + + + + Sbjct: 7 IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + D+ F VLHG +GEDG +Q + EL PY Sbjct: 67 ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132 G+ ASA+ MDK K ++ +P+ P +LV R + + P +KP Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ ++ + L +++ + + IE++ + + Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAARHDRRIVVEQGISAREIEISVLGNEHVEVSIPGE 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P ++Y Y KY + S ++PA + +VQ LA A QAI G++R DFL D Sbjct: 247 IIPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFLLDR 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ++ E+N PG TP+S++ +M +G + +LL ++E A Sbjct: 307 EQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIELALAR 353 >gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 383 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 63/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 + V+ GG S E EVSL S K+ AL+ + I + + L +P Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67 Query: 52 ---------------------------------------------DLAFNVLHGNFGEDG 66 D+ F VLHG FGEDG Sbjct: 68 ALPSKSAQNASSPSNRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------ 120 +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + R + Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDGRIV 187 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+GI + + + + + S++ + IE+ Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDRRVIVEEAIDAREIEI 247 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 D V VPK +FY YE KY + +PA + + K V+ A A QA Sbjct: 248 GILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAFQA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 I G++R DF + + +V EIN PG T S++P++ +G ++ +LL ++E A Sbjct: 308 IDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIELA 366 >gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 336 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 160/330 (48%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +AVL GG SSEREVS++S +AL D G V ID + Sbjct: 3 IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62 Query: 41 ---------SVGLVLAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 V L D+ F LHG GEDG +QA+L+ IPYT SG+L Sbjct: 63 PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK SK++ GVP I+ + I P ++KP GS++G+ V+K Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +++W +++IE++V G EL GV+ +L V EI + + Y+ KY Sbjct: 183 PEQLEEAIATAAAW--DHEVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + PA +P + EVQRLA AH+A+ SR DF D +++ LE N P Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQ-GRLWCLEANTLP 299 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GMT S+ P+ AA G F EL + E A Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCELA 329 >gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 283 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 135/288 (46%), Positives = 181/288 (62%), Gaps = 8/288 (2%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SLSSG+ CA+AL G++V ++D + L+ + PD+ FN LHG FGEDG VQ +LE Sbjct: 2 SLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLEW 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L IPYTHSG+L+SAL+MDK RSK+V S G+P+ S L ++ ++ +H++ PPYV+KP Sbjct: 62 LRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPYN 121 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + P L D L++E+YV G ELT VMGD +L VTEI Sbjct: 122 EGSSVGVYIVAEGANTPPKLAVDMP----DTLMVEKYVPGRELTVTVMGDRALAVTEIV- 176 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 +Y Y+ KY S H +PAK+P I A AH A+GCRG+SRSDF +D Sbjct: 177 -TDGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDEDK 235 Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N QPGMTP S+ PE AA G +F L+ WMVEDASC R Sbjct: 236 GLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283 >gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13] Length = 357 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +VSL S + ++V I + + + Sbjct: 6 VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65 Query: 46 ---------------------LAH-----LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + + K D+ F VLHG GEDG +Q +++L IPY Sbjct: 66 RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIK 131 G+LASA MDK+ + V+ + ++ + + P +K Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189 P GSS+GI +++ + + +H ++++IE+++ G EL V G + Sbjct: 186 PANCGSSIGINKATDAETLKDAVKIAF--SHDNKVVIEEFIQGKELEVAVFGYDNPFASF 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P +DFY YE KY S +PA+I D KE++ A A++A+GC+G+SR DF Sbjct: 244 VGEIEPCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLSRVDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG TP+S++P++ G S+ L+ ++E A Sbjct: 304 L-KQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349 >gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 316 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 161/307 (52%), Gaps = 10/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 + V+MGGISSEREVSL +G+ + L+ + ++ I + + + + D A L Sbjct: 3 IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + G+ + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQTPAGLYWKDVYD 122 Query: 119 DSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP GGSS+G+ +++ ++ + + ++S +LIE Y+ G EL Sbjct: 123 PQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYL--DQGILIEPYLKGTEL 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L + I S+++ Y KY + + ++P DI + V+ A ++Q Sbjct: 181 TCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEEKV-IELPPDIQQRVREAALASYQL 239 Query: 238 IGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C+ +R D + + LE+N PGMT S+FP+ AA AG +F ++L ++ Sbjct: 240 LQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVLDRII 299 Query: 294 EDASCLR 300 + R Sbjct: 300 ASSLHER 306 >gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27] Length = 310 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+K GSS+G+ +++ + + + ++ + L++EQ++ Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V P S Y Y KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D ++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDASCLR 300 + AS + Sbjct: 302 LLTASIGK 309 >gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724] Length = 311 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++L + + +AL+ G+ +I +D +V + K D+A HG Sbjct: 3 VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +LELL IPY SG+LASAL++DKM +K++ + +P +++ +++ Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122 Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + L + P++IKP GS++G+ ++ +++ + + + + + +++E+Y Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEEELLKGIELAF--QYDENIIVEEY 180 Query: 172 VDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + GIE+T G+ +PK+ FY Y+ KY+ S H++PA++P ++Y++ Q Sbjct: 181 IKGIEITAGIYDVNKPICLPLIEIIPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEKAQG 240 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F +L+ Sbjct: 241 LGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFPDLI 300 Query: 290 LWMVE 294 ++ Sbjct: 301 DNFIK 305 >gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus chthonoplastes PCC 7420] Length = 349 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 43/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S +A A AL ++V I + + Sbjct: 6 IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65 Query: 46 -----------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L P ++ F +LHG GEDG +Q +L L+++P SG+L SA+ Sbjct: 66 GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125 Query: 90 SMDKMRSKQVVSSCGVP------------VCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 +MDK+ KQV G+ + + + + P +KP GS Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI ++ + L ++S++ + +E + V S Sbjct: 186 SVGIAKVRSRSELETALDSAASYDRRIIVEAGVVAREVECAVLGNDNPKASVVGEISYTS 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY YE KY+ +T +PA +P + +++Q +A A A+ G+SR DF + + +V Sbjct: 246 DFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEATGEV 305 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P++ A G F +L+ ++E A Sbjct: 306 LINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIELA 344 >gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR] gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR] Length = 309 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 147/299 (49%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV++GG S+ER+VSL SG A L G D L K D F LHG Sbjct: 9 VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114 GEDG +Q L++LE+PYT S +L AL MDK+R KQ+ S G+P + Sbjct: 69 RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP + GSS+G+ + +S+ L L + D LL+EQ+V+G Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALAL--QHAAEFDDDLLVEQWVEG 186 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T G++ +L V + P Y +E KY + ++ + PA + D ++ LA A Sbjct: 187 AEYTIGILEGKALPVIRLQTPHEF-YDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AIG G R D + + + F LE N PGMT S+ P A AG F +L+ ++ Sbjct: 246 FAAIGGSGWGRIDVMRNNA-GEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLVERIL 303 >gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto BEST195] gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5] Length = 361 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E VSL + A AL F + I + V Sbjct: 6 GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQ 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 66 FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+LAS+ MDK+ K + + + + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPKESCEQVEQELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ ++G E+ D V Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008] gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula ATCC 17745] gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44] Length = 310 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+K GSS+G+ +++ + + + ++ + L++EQ++ Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V P S Y Y KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D ++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDASCLR 300 + AS + Sbjct: 302 LLTASIGK 309 >gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200] Length = 364 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 154/344 (44%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50 +L GG S+E +VSL + A AL F++ I + V + LK Sbjct: 10 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDIEALK 69 Query: 51 ---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 70 MSVAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 189 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 190 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTGEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 304 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY +++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 KVR 299 >gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 160/347 (46%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S E EVSL S + +A++ + + + I + + Sbjct: 6 VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG VQ + EL+ IPY Sbjct: 66 DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 SG+ SA+ MDK+ +K+++ G+PV + + + + P +KP Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVFYKKDLPHKLTEMVEEVEKSFGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + ++ ++ +LL+E+++ E+ C V+G+ + Sbjct: 186 ANLGSSVGITKAHDREELKNAIMHAA--EFDRKLLVERFIPAREIECSVLGNDDPVASVP 243 Query: 193 --AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P +FYSY KY + + +PA + + ++++ LA A++A+ C ++R DFL Sbjct: 244 GEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVDFL 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ + E+N PG T +S++P++ +G ++EL+ ++E A Sbjct: 304 ISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIELA 350 >gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662] gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 350 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE EVS S +L++ + V + + + +L Sbjct: 5 IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64 Query: 50 ---------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG GEDG +Q + E+ +IPY Sbjct: 65 SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V G+ + + R + + +S P +KP + Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+G+ + +++ L +++ H +L+E+ + G E+ C V + Sbjct: 185 AGSSVGVSKAEDREALSKALSKAA--EHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY Y+ KY++ S ++ +P + +E+++ A +A+ G+SR DF Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDFFI-A 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + A G L ++ A Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQGIKTPALADELIRLA 345 >gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 308 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AVL GG S EREVSL SG A L+ G +D+ + + +A +AFNV H Sbjct: 7 IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+ + G+PV IL++R + Sbjct: 67 GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126 Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 P IKP GGSSLG+ + + L + + D++L E V G E+ Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLGVSKVGGPAELDAALQCAFAIE--DEVLCEGAVIGHEV 184 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G++ +L I P++ Y Y KY + ++ ++LP+ + + +++Q LA A Sbjct: 185 TVGILDGQALPPIVIETPRAF-YDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR R DF+ + LE+N PGMT S+ P A G F EL ++ A Sbjct: 244 LGCRDWGRVDFMI-GGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301 >gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999] Length = 321 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 8/300 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 A+L+GG S+EREVSL+SG+A A++ G + D + L + A +LHG Sbjct: 7 AILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHGR 66 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RF 116 GEDG +Q LE L IPYT SG+L SA++MDK+ +K V +CG+P + Sbjct: 67 GGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVDE 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P ++KP GSS+G+ + + + + + +++LIEQY+ G E Sbjct: 127 AQTIMLNIGPDLMVKPSHEGSSIGMSKTGTAEELISAVNTAL--TYDERVLIEQYIVGTE 184 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++G+ +L + P Y YE KY + + + P+ + + + +L+ A + Sbjct: 185 YTVSILGENALPSISMVTPNIF-YDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAFK 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ C G R D + D + + LE+N PGMT S+ P+ A AGY F EL+ ++ A Sbjct: 244 AVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELVKQILVSA 303 >gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 304 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIERYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402] Length = 368 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 57/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51 +A++ GG SSE EVSL S + ++ K+ I + ++ L + Sbjct: 3 IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D F VLHG FGEDG +Q + E+ ++ Sbjct: 62 AVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126 PY ++++++SMDK ++K + G+P+ P I + + D + + Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKALLARAEKDLEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P IKP + GSS+G ++K + +S W++ + +E + Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +P FY YE KY+ N +PA + K ++ A A++A+ G+SR Sbjct: 242 AYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLSR 301 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 DF D + K++ E+N PG T +S+FP+M +G + EL++ ++E A R Sbjct: 302 VDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMHLIELA-IDR 355 >gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 311 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I +D + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY +++ + ++P ++ + V + + ++A Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYRA 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIETSL 303 Query: 298 CLR 300 +R Sbjct: 304 KIR 306 >gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241] Length = 361 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + H + P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271] Length = 361 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 52/347 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +LASA MDK+ K + + G+ R T + + P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELINLAIAR 350 >gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115] gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115] Length = 339 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 148/333 (44%), Gaps = 35/333 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44 +L GG S E EVSL S ++ +AL F V+ + + + Sbjct: 7 LLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAPGG 66 Query: 45 -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 V + D F +LHG GEDG +Q +L L IP+ SG+L SA+SMDK+ +K Sbjct: 67 GDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 QV++S G+ L R + P +KP GSS+GI + Sbjct: 127 QVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHTDD 186 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207 + L + S + L E+ G+ S+FY YE KY+ Sbjct: 187 LQAALDLAFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSFDSEFYDYETKYT 246 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + +PA++P D+ + V+ +A A +A+ C G++R DF + + ++F E+N PG Sbjct: 247 EGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEVNTMPG 306 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T S++P++ AG + EL+ +V A R Sbjct: 307 FTTTSMYPKLFEAAGIGYSELVTRLVTLALEER 339 >gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 302 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 96/299 (32%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L+ ++V I +D + ++ D+A LHG Sbjct: 3 VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ GV + + + Sbjct: 63 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGVATPDWVHLIKGEELP 122 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L+ P V+KP GGSS+G+ ++ ++ + + W ++ +IEQY+ G E+ Sbjct: 123 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKW--DNESIIEQYLIGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ + + F+ Y+ K ST P ++PL I+ V + A ++++A Sbjct: 181 TCPILNEQL-LPVLSIKHTAVFFDYQAK-YDDASTVEEPVELPLAIHDRVAKAAMISYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL ++E + Sbjct: 239 LRCTVYARVDMLI--KDGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIESS 295 >gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. SMY] Length = 361 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E VSL + A AL F + I + V Sbjct: 6 GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQ 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 66 FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+LAS+ MDK+ K + + + + + + + P +KP Sbjct: 126 GVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ ++G E+ D V Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347 >gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 304 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY +++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 R Sbjct: 297 KAR 299 >gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3] gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 360 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 164/351 (46%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+ GG S+E E+S+ S ++ A+ L+ F + I + S + Sbjct: 6 VALFFGGQSAEHEISIISAQSIAAHLDTERFTLLPIYITHSGEWLCDGFARTLLTTNLAS 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 LA L D+AF LHG+FGEDG +Q LE Sbjct: 66 KLRGSSREETAAALQQMVRNAAQAPCNRNLAALGVDVAFLALHGSFGEDGRMQGFLETCG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127 IPYT G+LASAL+MDK +K V+ G+ V + + +S P Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + + L + ++++E V G E+ V+G+A Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAAC--ALDWKVVVESTVKGREIEVAVLGNADP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + P +FY ++ KY ++ +PA+IP + +EV+R A A++A+GC G++R Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D + V E+N PG T +S++P+M +G S+R L+ ++E A Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLELA 354 >gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 306 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 154/295 (52%), Gaps = 6/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 ++ GG S+EREVSLS AL G KV+++D +L D AF +HG Sbjct: 5 LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+LE ++ PY SG AS L+++K +KQV + G+P R Sbjct: 65 PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSSL + + + + + G+ +L+E+ V+G E+T Sbjct: 125 STKLRFPLFVKPNMGGSSLDLCRADNAEELTPAIERIFC--RGETVLLEEGVNGQEVTSA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ +L + I F+ Y KY+ + + PA IP I + VQ L+ AH+A+ Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 RG SRSDF+ + + LE+N PGMTP S+ P+ A AG F L+ +++ Sbjct: 243 RGYSRSDFML--EGDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALIKRLMDL 295 >gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437] Length = 367 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AVL GG S E VSL S + A++ V + ++ Sbjct: 7 VAVLFGGKSGEHAVSLQSAASVIQAMDPEKMDVFPVLINPEGKWQPGEYALPALEGKMEP 66 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 VL + D+ F VLHG FGEDG +Q +LE+ +IPY Sbjct: 67 KLLEELGKRSTARDPLPVTTSLPVLKWEEIDVVFPVLHGTFGEDGTIQGMLEIADIPYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 +G+LASA+ MDK+ K++ + G+P R ++ + + P +KP Sbjct: 127 AGVLASAVGMDKVMMKKIFAQEGLPQGDFTFCLRRAIEQDIDTVISGIEAEFAYPCFVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI K + + L ++ + ++++E+++D E+ V+G+ + Sbjct: 187 ANLGSSVGISKAKNREELKGALQLAA--RYDRKVIVEEFIDAREVEVAVLGNEEPVASVP 244 Query: 193 --AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V +DFY Y KY S +PA +P + +E+ LA A+Q I C G++R DF Sbjct: 245 GEIVSSNDFYDYRAKYIDGKSEMRIPADLPEPVLEEISGLALKAYQGIDCSGLARVDFFI 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K+ EIN PG TP S++ + ++G S+ EL+ +++ A Sbjct: 305 RKSDGKILINEINTMPGFTPFSMYANLWKHSGISYPELISRLIDLA 350 >gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 304 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ + +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ GV I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPGEIKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG ++ +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 304 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725] Length = 288 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 109/296 (36%), Positives = 157/296 (53%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL+SGKA +L G+ IDV + ++ + D A+ H Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIENEYDFAYLAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L++L PYT SG AS ++MDK+ +K + + + + Sbjct: 63 GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITK------KLAESVGVRIAKNYDK 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P VIKP GSS+ I + + + G +++IE+ + G ELT Sbjct: 117 VADIDSYPVVIKPALEGSSVEIFFCYNREEAEKAV----AELKGKKIVIEEMITGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +PK++FY YE KY+ S H PAKI Y E A H +G Sbjct: 173 GVING-EGIGVLRIIPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVLG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285 >gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 304 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 368 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 51/344 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44 +L GG S E EVSL S + L+ + + I +D+S + + Sbjct: 12 VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 71 Query: 45 VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V P + F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 72 VTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 131 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141 MDK ++++ G+ L++ F + P +KP GSS+GI Sbjct: 132 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 191 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192 + + + + +++L+E+++ G E+ CG + + ++ Sbjct: 192 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 249 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA++ + +++++ A + C+G++R DF + Sbjct: 250 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 309 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 310 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 353 >gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405] gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405] Length = 368 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 153/355 (43%), Gaps = 57/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51 +A++ GG SSE EVSL S + ++ K+ I + ++ L + Sbjct: 3 IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D F VLHG FGEDG +Q + E+ ++ Sbjct: 62 AVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126 PY ++++++SMDK ++K + G+P+ P I + R D + + Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDLEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P IKP + GSS+G ++K + +S W++ + +E + Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +P FY YE KY+ N +PA + K ++ A A++A+ G+SR Sbjct: 242 AYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLSR 301 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 DF D + K++ E+N PG T +S+FP+M +G + EL++ ++E A R Sbjct: 302 VDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA-IDR 355 >gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 364 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 51/344 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44 +L GG S E EVSL S + L+ + + I +D+S + + Sbjct: 8 VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67 Query: 45 VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V P + F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 68 VTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141 MDK ++++ G+ L++ F + P +KP GSS+GI Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192 + + + + +++L+E+++ G E+ CG + + ++ Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA++ + +++++ A + C+G++R DF + Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349 >gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] Length = 304 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 295 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 158/298 (53%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ + PK F+ KY + + K+ D++KEV+++A ++ Sbjct: 181 TCPIIDG-KMLPVLAIKPKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E+ Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294 >gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88] gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88] Length = 301 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 169/299 (56%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+S+E+E+S +GK L+ + +++ I ++ L+ + AF LHG Sbjct: 3 IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117 NFGEDG VQA+LE + +PY+ SG+LAS+L MDK SK+++ G+ I++ + Sbjct: 63 NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +S I P V+KP GGSS+GI ++KK+Q + + ++ +++LIE+Y+ G E+ Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC M D K +F++Y+ KY + + A + L++ +V++++ ++ Sbjct: 181 TC-CMLDGKPLPILSIKTKEEFFNYKAKYFEGVAEEKV-ADLSLELKDQVEKISNKCWKS 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + R D + +V+ +EIN PGMT S+FP+ A G +F ELL ++E + Sbjct: 239 FKLKVYGRIDMII--KGNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIELS 295 >gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22] Length = 365 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI +K ++ + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSSAENAISPLSLSTEIIPSAASEENTIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 301 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055] Length = 377 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al Hakam] gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 367 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 13 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 72 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 73 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 132 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 133 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 193 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 250 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 251 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 309 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 310 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353 >gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W] gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108] gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820] gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102] gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1] gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201] gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 150/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + + P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4] Length = 303 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 154/295 (52%), Gaps = 5/295 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ +L D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP GGSSL + + + + + L + + ++E + G+E+TCG Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPALEAVFAHC--GEAIVEPAIPGVEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 243 RGYSRADYIL-RDDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIEL 296 >gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032] gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032] Length = 360 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 142/342 (41%), Gaps = 48/342 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E VSL + A AL F + I + + Sbjct: 6 GLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRMLQ 65 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 A K D+ F +LHG GEDG +Q +LELL IPY +G Sbjct: 66 FEQNAKTFLPTSLNESMFPQPTSADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNG 125 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134 +LASA MDK+ K V + G+ + N+ + ++ P +KP Sbjct: 126 VLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + + ++ + IE+ + V Sbjct: 186 MGSSVGISKCRSKEELQTAFDLAFQYDRRVVVEEGVVGREIEIGVLGNDEPKCSVVGEIA 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA + D YK + +A A +++ G+ R+DF Sbjct: 246 PKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTEK- 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + + G + EL+ +V A Sbjct: 305 GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346 >gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407] gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 148/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 +LAS+ MDK+ K + + + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRQEAYSKVEDKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3] gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29] gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 147/344 (42%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENSISPLSLSTEIIPSATSEEDAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 +LAS+ MDK+ K + + + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELESAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550] Length = 364 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 10 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 69 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 70 MSGAENAISPLSLSTEIIPAAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 189 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 190 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876] gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W] gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24] gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15] gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2] gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185] gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676] gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 364 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 10 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 69 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 70 MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 189 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 190 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350 >gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 301 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579] gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264] gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134] gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264] gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 365 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342] Length = 365 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350 >gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3] Length = 376 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 77 RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I D + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 254 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 314 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 315 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 361 >gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842] gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222] Length = 361 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 367 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 13 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 72 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 73 MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 132 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LAS+ MDK+ K + + G+ R + + + P +KP Sbjct: 133 VLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 192 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + +++ ++++E+ + G E+ GV + V Sbjct: 193 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 250 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 251 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 309 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 310 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353 >gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2] Length = 358 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 145/341 (42%), Gaps = 46/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VS+ + A AL+ F++ I + V Sbjct: 5 VGLLYGGKSAEHKVSMQTAMAVIKALDLEKFEIHPIYISEEGQWVKGPQLQGPVSSVKEL 64 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG VQ +LELL +PY +G+ Sbjct: 65 EFSQGEALPPTALAPTLFQGAQDKGPFDVIFPLLHGPNGEDGTVQGLLELLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135 LAS+ MDK+ K + + G+P + R +++ + P +KP Sbjct: 125 LASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENETEAAYDQVERELGYPCFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + ++ ++ + IE V VP Sbjct: 185 GSSVGISKCMNRSELEEAFKEAFQFDRKIIIEEGVTAREIEAGVLGNDYPECSVAGEIVP 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K +FY Y+ KY ++ ++PA+I Y E++ +A A +A+ C G+ R+DF Sbjct: 245 KVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMAIKAFKALDCSGLVRADFFLTRE-G 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG TP S+FP + + G + +L+ +V A Sbjct: 304 KLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 344 >gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101] Length = 301 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--RDNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032] Length = 315 Score = 175 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 162/304 (53%), Gaps = 13/304 (4%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG 60 A++ GG S EREVSL AL+ ++V + D + + A D+AF +LHG Sbjct: 7 ALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHIDVAFLLLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GEDG +Q L+LL IPY +G+L SAL+MDK +K + G+PV P ++V Sbjct: 67 VHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGDLAD 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 T + P V+KP++ GSS+G+ ++++ + +P L + H +++++E Y+ G E Sbjct: 127 TRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAALRLAL--RHDNEVMVEAYIKGRE 184 Query: 177 LTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LT A + I + +F+ YE KY S + PA + ++ ++ Q A Sbjct: 185 LTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQAYAM 244 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+++ RG SR+D + +++ LE N PGMTP S+ P+ AA AG F LL + Sbjct: 245 EAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALLDRL 302 Query: 293 VEDA 296 V A Sbjct: 303 VALA 306 >gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax sp. DG881] Length = 307 Score = 175 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 10/296 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL SG A L + G +D L D AF LHG Sbjct: 16 VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLK--GFDAAFIALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+ G+P + R Sbjct: 74 RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRD---- 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P ++KP GSS+G+ + + L+ + +L+E +V+G E T Sbjct: 130 EADLGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAE--KFDQDVLVEAWVNGPEYTVA 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L + P + Y +E KY S ++ ++ PA + + +++LA A + GC Sbjct: 188 VLGDEALPAIRLQTPHAF-YDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAGC 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG R D + D + LE+N PGMT S+ P A G F L+ ++ DA Sbjct: 247 RGWGRVDVMRDAQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301 >gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055] gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum] gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94] gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames] gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne] gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488] gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193] gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389] gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465] gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174] gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] Length = 304 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 304 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B] gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442] Length = 304 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG Q LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris] gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris] gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby] gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 364 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 149/344 (43%), Gaps = 51/344 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44 +L GG S E EVSL S + L+ + + I +D+S + + Sbjct: 8 VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67 Query: 45 VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V P ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 68 VTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141 MDK ++++ G+ L++ F + P +KP GSS+GI Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192 + + + + +++L+E+++ G E+ CG + + ++ Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA++ + +++++ A + C+G++R DF + Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++++ EIN PG T +S++P++ G ++ +LL ++ A Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349 >gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 304 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY + + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L] gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANTEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase) (D-alanine--D-lactate ligase) [Pyramidobacter piscolens W5455] Length = 355 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 152/345 (44%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE EVS SG A ++ + + I + + + Sbjct: 7 VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG Q I EL +IPY Sbjct: 67 GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLK 134 +L+SA +MDK +K V++ CG+P R + +S P +KP Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEI 192 GSS G+ + L ++ +++ E+ + G EL C DA Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAA--AQDCKVIAEETIVGRELECALLGGWDAEASGVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY Y+ KY S S V+ +P +E++ +A +A+ CRG+SR+DF + Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + +V + EIN PG T +S++P++ AG EL+ ++E A+ Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349 >gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583] gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium 6_1_63FAA] Length = 343 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 48/338 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG S+EREVS++SG+ AL + K +D +L P Sbjct: 3 IIVLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAA 62 Query: 52 --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F LHG GEDG VQ++L+L+ I Y Sbjct: 63 DAMREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGG 136 T SG L+S ++MDK +K V + GVP I + + + + P ++KP GG Sbjct: 123 TGSGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGG 182 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ + LL++ ++ +++++EQ++ G E + V+ + V P Sbjct: 183 SSVGVCIANNQTEYQAALLEAF--SYENEVVVEQFITGREFSVAVVDGKAYPVI-EIAPL 239 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY + + PA + + KE+Q+ A + ++A+ + +R DFL D Sbjct: 240 QGFYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDDEGN- 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + +L ++E Sbjct: 299 MYCLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336 >gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1] gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEILK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187] gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97] gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187] gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293] gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987] gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987] Length = 361 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831] gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831] Length = 366 Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 51/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + V + +D+ ++ P Sbjct: 5 VGIVFGGKSAEHEVSLQSAKNIVDAIDSDKYDVYLLGIDKQGNWHVNDRSHYLINEEDPK 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 65 LISLNKTNEGIAVIPGAEKNQIVTSNSTKSLDQLDVIFPIVHGTLGEDGSLQGMLRMANI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V + + P IK Sbjct: 125 PFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGYAYRSVDKESIHFDSLKEELGLPMFIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ ++ + + ++H + IE + V Sbjct: 185 PANQGSSVGVHKVENEEQFYSAIKDAFQFDHKLLVEEAIVGREIECAVLGNEKPAASVPG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P DFYSYE KY +PAK+ + +Q +A A +A+ C G++R D Sbjct: 245 EILPTGDFYSYEAKYIDETGAVLQIPAKLEEPVVDSIQDIALQAFKALNCEGLARVDVFL 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S++P++ +G S+REL+ ++E A Sbjct: 305 T-DDNEIVINEINTLPGFTKISMYPKLWEESGVSYRELIENLIELA 349 >gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99] Length = 361 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum] Length = 323 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 6/302 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S E E+S SGKA A AL AGF+V + + DRS+ L PD+AF HG Sbjct: 14 VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G +Q LE ++IPYT SG+LASA+ M KMRS+ + G+ V + + Sbjct: 74 GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEESFN 133 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 IS PY++KP GSS+G+ + + + + + ++ ++H +L+EQ + G E+ Sbjct: 134 PGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSHW--VLVEQLIPGREIQ 191 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ L EI K FY+Y KY S H+ PA + D E+ R+ A + Sbjct: 192 SAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACRV 251 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + RG R D + + LEIN PG+TP S+ PE+A++ G SF +L++ ++ AS Sbjct: 252 LDVRGACRLDTILNDE-GVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATAS 310 Query: 298 CL 299 Sbjct: 311 LD 312 >gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 361 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESSVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 301 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V + V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F K+ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98] Length = 362 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 150/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 +L GG S+E +VSL + A AL F++ I + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQALQ 66 Query: 45 ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG VQ +LEL+ IPY + Sbjct: 67 MSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPL 133 G+LASA MDK+ K + + G+ R + + P +KP Sbjct: 127 GVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191 GSS+GI K + + ++ ++++E+ + G E+ GV D V Sbjct: 187 NLGSSVGINKCKDREELEKAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDDPKCSVVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK +FY Y+ KY ++ ++PA+I + +QR A A QA+ G++R+DF Sbjct: 245 EIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADFFLT 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G S+ EL+ ++ A Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELIEELIRLA 348 >gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 298 Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 148/301 (49%), Gaps = 8/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSE+EVSL SG+ + ++ I + + D AF LHG Sbjct: 3 VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QA+LE L+IPY+ +L SAL M+K +K++++S + IL+ + Sbjct: 63 RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122 Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ P ++KP GGSS+G ++ + + ++ + ++LLIE+Y+ G E+ Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKTDLLSAI--DEAFKYDEELLIEEYIAGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+ I F+ Y KY+ + + + + +V ++A Sbjct: 181 TSFVLDGEVFPTVCIKPRFGQFFDYNSKYTINGALEEIALLPSI-LQDKVTQIAEKIWAL 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 C+ R DF+ + ++ LEIN PG+T S+ P+ A G F L+ ++ + Sbjct: 240 FNCKSYCRIDFII--KNETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLIDAIIRTSM 297 Query: 298 C 298 Sbjct: 298 I 298 >gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638] gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638] Length = 366 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRDQHSFAQITAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K ++ ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVG--VSKVTSEAQFADAVRLAFEFDHKVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA + +I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T +S++P++ +G S+ EL+ ++E A Sbjct: 304 FLTAEND-VIINEINTLPGFTNISMYPKLWQASGISYPELITRLIELA 350 >gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 301 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V ++ V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P IKP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803] Length = 361 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 151/348 (43%), Gaps = 53/348 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + + P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +V+ E+N PG TP S+FP + + G + EL+ ++ A R Sbjct: 304 QDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA-IDR 350 >gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414] Length = 355 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 150/338 (44%), Gaps = 43/338 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+SS +A A AL +++ + ++ + + Sbjct: 6 VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKNGCWLAGEIPQQVLET 65 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F +LHG GEDG +Q +L L+++P+ SG+L SAL Sbjct: 66 GTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAL 125 Query: 90 SMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKGGS 137 MDK+ K G+P + + + + + P +KP GS Sbjct: 126 GMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI ++ Q + L +++++ + +E + S Sbjct: 186 SVGIAKVRSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDQTKASIVGEITFNS 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY YE KY+ + ++PA IP + +++Q +A A A+ G++R DF F + ++ Sbjct: 246 DFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEATGEI 305 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 EIN PG T S++P++ A +G F EL+ +++ Sbjct: 306 LINEINTFPGFTATSMYPQLWAESGIPFPELVDRLIQL 343 >gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam] Length = 311 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 9/302 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 11 GVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGK 70 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTM 118 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 71 YGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLNF 130 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+T Sbjct: 131 DELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEIT 188 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C + ++F+ Y KY + + ++P ++ + V + + ++A+ Sbjct: 189 CSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKAL 246 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C +R D + + +E+N PGMT S+ P+ A G + +LL ++E + Sbjct: 247 KCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSLR 304 Query: 299 LR 300 +R Sbjct: 305 VR 306 >gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748] Length = 310 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A ALE G+ ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLES 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+K GSS+G+ +++ + + + ++ + L++EQ++ Sbjct: 126 AEAIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVVRVDVMTDHAD-KMYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301 Query: 293 VEDASCLR 300 + AS + Sbjct: 302 LLTASIGK 309 >gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1] Length = 383 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 63/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 + V+ GG S E EVSL S K+ AL+ + I + + L +P Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67 Query: 52 ---------------------------------------------DLAFNVLHGNFGEDG 66 D+ F VLHG FGEDG Sbjct: 68 TLPSKGAQNTASPSKRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------ 120 +Q +LE++ IPY SG+LASAL MDK+ KQ+ S+ G+P + R + Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWTQDDGRIV 187 Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GSS+GI + + + + + S++ + IE+ Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDRRVIVEEAIDAREIEI 247 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 D V VPK +FY YE KY + +PA + + K V+ A A QA Sbjct: 248 GILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAFQA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 I G++R DF + + +V EIN PG T S++P++ +G ++ +LL ++E A Sbjct: 308 IDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIELA 366 >gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241] gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 304 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IEQY+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEQYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAF--EFDHKVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA I I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + EL+ ++E A Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIELA 350 >gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI] gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 150/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134 +LASA MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA+ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAERTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347 >gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 304 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 304 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ G+ I Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QVR 299 >gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 301 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 151/297 (50%), Gaps = 9/297 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+S+ SG + AL+ ++ I ++ L+ D A LHG Sbjct: 3 VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQ++L+ L IP++ G L+SA+ MDK +K++++ V + V+ Sbjct: 63 KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +KP GGSS+ +++ +++ + + + +++IE+Y+ G E+ Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ L V I F ++ D++KEV+++A ++ Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYGDGGADEFIVELNEDLHKEVEKMALETYKL 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + C +R D L + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293 >gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184] Length = 312 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 10/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K L + + H +++E+ ++G Sbjct: 132 ARATDIVTKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T + GD L + VP +FY Y KY + ++ +++P +P + E++R+A A Sbjct: 190 GEYTACIAGDLDLPLI-KIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 248 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GC R+DF+ D ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 249 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 306 >gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109] Length = 309 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 13/304 (4%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHG 60 A+L GG SSEREVSL SG AL+ A + + + D + ++ D+A ++HG Sbjct: 7 ALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVNRF 116 +GEDG +Q +L+LL +PY SG++ASAL+M+K SK + G+ V S Sbjct: 67 RWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAID 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P VIKP+ GSS+G+ V + + + ++ + ++L+E+++ G+E Sbjct: 127 PRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEAL--AYDRRVLVEEFISGME 184 Query: 177 LTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 +T GV+G+ + V + F++YE KY + ++PA++ ++ VQ Sbjct: 185 VTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECGL 244 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+GC G SR+D + +++ LE N PGMT S+FP+ A G F LL + Sbjct: 245 TAHRALGCWGYSRTDTIV--RDGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDRL 302 Query: 293 VEDA 296 VE A Sbjct: 303 VELA 306 >gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1] Length = 370 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 59/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---------HLKP 51 + VL GG S E EVSL S +A L+ + + I + + ++A P Sbjct: 7 VGVLFGGQSGEHEVSLVSARAIMDGLDPEKYDIIPIGITKQGRWIIAADAHARLLVQADP 66 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG GEDG VQ Sbjct: 67 SKLPGGSISATTTASAGVGDQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQG 126 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121 +LEL+ +PY G+LASA+ MDK +K S G+PV P +LV R + Sbjct: 127 LLELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIE 186 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP GSS+G+ + ++ + +++S++ + IE++ Sbjct: 187 SRLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDRRIIVEQGIPAREIEVSVLG 246 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + V +P ++Y Y KY S +S ++PA I L++ +V+ LA A +AI Sbjct: 247 NDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAIDGA 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DFL + + ++ EIN PG TPVS++ M +G + LL +++ A Sbjct: 307 GLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLLDRLIDLA 361 >gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776] Length = 338 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ER +SL SG+A AL++ G + ID + D F LHG Sbjct: 18 IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALHG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNR 115 FGEDG VQ +LE IPYT S AS L+ DK +KQ VP Sbjct: 78 RFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFD 137 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + + P VIKP GSSLG+ ++++ + + ++ + + L++E + G Sbjct: 138 SLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARH--YDEALIMEAAIVGS 195 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T G+ D L +F+ + KY ++ ++ +P ++++ A Sbjct: 196 EWTVGLHDDEILPPIC-IETDREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRGAV 254 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G GISR D + D + LEIN PG+T S+ P+ A AG+S EL + Sbjct: 255 HALGVTGISRVDLMLDSEGN-PWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHR 313 Query: 296 A 296 A Sbjct: 314 A 314 >gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817] Length = 288 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 155/296 (52%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL SG A +L+ G+ +DV +++ + DLA+ H Sbjct: 3 IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GE+G Q +L++L PYT SG + SA++MDK + V I + Sbjct: 63 GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDK------AYTKAVANSVGIKTAKTYNC 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P V+KP + GSS+GI + + L G + LIE+ + G ELT Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVREAL----RALEGRKPLIEEMIQGEELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +PK+ FY YE KY++ S H PAKI Y + A H IG Sbjct: 173 GVLNG-EGLGVLRIIPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ +V++LE+N PGMT S+ P++ GY+F +L+ MV+ Sbjct: 232 LKGISRSDFML--KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285 >gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1] gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1] Length = 378 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 152/363 (41%), Gaps = 66/363 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE VS + A++ ++V I + +S VLA Sbjct: 15 VAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSAA 74 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG +GEDG +Q +LEL Sbjct: 75 LPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLEL 134 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126 + Y +G+LASA+ MDK K V S G+ V P + V + + Sbjct: 135 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEAVRKRVDKLGF 194 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + + ++ H +L+IE + G E+ C V+ Sbjct: 195 PVFVKPARAGSSMGISKVDSMEGLDAAIDEAR--RHDLKLVIEAGIVGREIECAVLQGRG 252 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 D ++P + + PA +P + V+ LA +A A Sbjct: 253 TDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALSCPADMPDEAIARVRELAAVAFDA 312 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G G+SR DF + P ++ EIN PG TP S++P+M A +G ++ +L+ ++ A Sbjct: 313 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLAYGDLIDELIHLAL 371 Query: 298 CLR 300 + Sbjct: 372 TRK 374 >gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] Length = 304 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QIR 299 >gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP] gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP] Length = 303 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 9/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL SG A AL+ G+ V ID L FN+LHG Sbjct: 8 IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116 GE+G++Q LE + IPYT G++ASA+++DK R+K + ++ G+P ++V R Sbjct: 68 GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 +S P +KP GSS+G+ +K + + + +++ +L+E+++ G E Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLPAI--TAALEFDTIVLVEEFLTGAE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V+ L +P +FY Y KY S + +++P + + EV ++ A+ Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYLSDKTQYIVP-ALTNERQAEVAKIVKAAYD 243 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCRG SR D + D ++ +E+N PGMT SIFP+ AA G SF +L+ ++E + Sbjct: 244 VVGCRGWSRIDVMED-QNQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLELS 302 >gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342] Length = 304 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 63 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ + L W +++IEQY+ G E+ Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEQYIKGDEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY ++ + ++P +I + V + + ++A Sbjct: 181 TCSILDGKP-LPIVSIRHAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG + +LL ++E + Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 RVR 299 >gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A] gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 348 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGL--------VLAH 48 + V+ GG SSE EVS+ S K +AL + I +D+ +L Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67 Query: 49 LK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGS 137 L MDK+ K V S +P P I + +IS P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195 S+GI + + ++ + +++++E+ ++G EL CG+ V Sbjct: 188 SVGITKAYSKEEFIAGIEFAA--KYDERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346 >gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120] gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 364 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 58/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS+SS +A ASAL + +++ + + VL Sbjct: 3 VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 62 Query: 49 LKP----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 P D+ F +LHG GEDG +Q +L L Sbjct: 63 GAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125 ++ P+ SG+L SAL MDK+ K G+P V R + S + Sbjct: 123 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 182 Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS+GI ++ Q + L +++++ + +E Sbjct: 183 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAVLGN 242 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 SDFY YE KY++ + ++PA IP DI +++Q +A A A+ G Sbjct: 243 DQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAVDAAG 302 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF + + +V EIN PG T S++P++ A++G F EL+ +V+ A Sbjct: 303 LARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLA 356 >gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2143] Length = 313 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 5/297 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG ++ER VSL SG+A +AL +D + + F LHG Sbjct: 19 VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMD 119 GE G VQ L+ +++ YT SG++ASA+++DK+R K + +P D Sbjct: 79 GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPTPSFCELSINSHWD 138 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++KP GSS+G+ + + + + ++ EQ+V G E T Sbjct: 139 DIIRQWGKVIVKPASEGSSIGMAIATTGAELKGAY--EIASQYQGAVMAEQWVQGAEFTV 196 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++G +L V + Y YE KY S ++ ++ P + +E++++A A ++G Sbjct: 197 AILGKETLPVIRLETDHGF-YDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSVG 255 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G R DF+ D F LE+N PGMT S+ P A A +F EL+ ++ + Sbjct: 256 CEGWGRVDFMQDESDN-FFLLEVNTVPGMTDHSLVPMAAKEASVNFEELVAEILRLS 311 >gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 369 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ + F V + +D+ + Sbjct: 10 VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 70 RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ V P I D + + P +K Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K ++ + + ++++EQ + G E+ C V+G+ + Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 247 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I +I +++ +A A+Q +GC G++R D Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 307 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + L+ ++E A Sbjct: 308 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 354 >gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRS------------ 41 + VL GG S+ER VS++SG AL G + +D+ DR Sbjct: 3 IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62 Query: 42 ------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 + +K D+ F LHG GEDG VQA +L+ I Sbjct: 63 SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKG 135 YT +G L+SAL+MDK +KQ+ VP + + + M + + P V+K G Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ L + ++ +++++E+Y+ G E + V+ + P Sbjct: 183 GSSVGVYIVNDQAEYEQALKDAY--SYENEVVVEEYIKGREFSVAVVDGKAY-PIIEIAP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY Y+ KY + ++ PA+I ++ +++Q A +A+ G R DF+ + Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMM-KENG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ A G + L ++E Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337 >gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 352 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 144/341 (42%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS++S ++ A + V +D++ Sbjct: 6 VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65 Query: 46 -------------LAHLKPDL-----AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + P++ F +LHG GEDG +Q +L L+ + + SG+L S Sbjct: 66 GQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKG 135 L MDK+ K ++ G+P + + I P IKP Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + Q + L ++S++ + IE + + Sbjct: 186 GSSVGISKARNQQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ S+ V+PA IP I +V+ +A A +A+ G+SR DF + + Sbjct: 246 DSDFYDYETKYTDGRSSMVIPANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEKTG 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T S++P++ G F +L+ +V+ A Sbjct: 306 EVLINEINTLPGFTNFSMYPQLWKATGLEFDQLVDKLVQLA 346 >gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7] gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208] gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3] Length = 361 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 85/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 ++ GG S+E VSL + A AL F + I + Sbjct: 6 GLVYGGKSAEHNVSLQTALAVTKALNTDKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQ 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG +Q +LELL +PY + Sbjct: 66 LEQNGESFALSALNREMFPEASADEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+P + + + P +KP Sbjct: 126 GVLASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEEELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ + G E+ + Sbjct: 186 NLGSSVGISKCRNREELEKAFELAF--EYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA++ + Y E+ +A A +AI G+ R+DF Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 304 -NDGQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 347 >gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514] Length = 304 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 148/296 (50%), Gaps = 6/296 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V++GG S+ REVSL +G A A AL G +V ++D + A ++ F LHG Sbjct: 12 ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ L+ L IPYT AS L DK+ +KQ GVP ++ + Sbjct: 70 TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP V+KP++ GSS+G+ + + L ++ + Q+L+E+ + G E T G Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ PK+ Y Y+ KY++ + ++ PA + +Q A A +AIG Sbjct: 188 IL-GNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R S D + P + + LE+N PGMT S+ P+ A AG + EL MV+ A Sbjct: 247 RDYSXVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301 >gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1] Length = 291 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + + ++ L ++ H +++LIE++ Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++G+ L P FY YE KY S + + PA + +Q L Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A +GC+G R D + D + + LE N PGMT S+ P A AG Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 >gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428] Length = 308 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV + + D+AFNV+HG Sbjct: 10 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDV--NGSDFIVPAGTDVAFNVIHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ KQ VP ++ Sbjct: 68 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILRDGA--- 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYV+K K GSS+G+ ++++ + +W++G +LL+E +++G ELT G Sbjct: 125 NPTLPLPYVVKAPKEGSSVGVFIVRE--EAKVADTMREAWSYGKELLVEDFINGRELTVG 182 Query: 181 VMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+GD +L + + + Y + + + H PA I ++ + VQ +A A Sbjct: 183 VLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAA 242 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI R D L + + LEIN PGMT VS+ PE AA AG S+ EL ++E Sbjct: 243 RAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIEL 301 Query: 296 ASCLR 300 + R Sbjct: 302 SLARR 306 >gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428] Length = 315 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SER+VSL+SG A+AL G V+++DV + + D+AFNV+HG Sbjct: 17 IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDV--NGSDFIVPAGTDVAFNVIHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +Q ILE + YT G+ S L++DK+ +KQ VP ++ Sbjct: 75 TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDGA--- 131 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PYV+K K GSS+G+ ++++ + +W++G +LL+E +++G ELT G Sbjct: 132 NPTLPLPYVVKAPKEGSSVGVFIVRE--EAKVADTMREAWSYGKELLVEDFINGRELTVG 189 Query: 181 VMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 V+GD +L + + + Y + + + H PA I ++ + VQ +A A Sbjct: 190 VLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAA 249 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI R D L + + LEIN PGMT VS+ PE AA AG S+ EL ++E Sbjct: 250 RAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIEL 308 Query: 296 ASCLR 300 + R Sbjct: 309 SLARR 313 >gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413] gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 367 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 58/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E EVS+SS +A ASAL + +++ + + VL Sbjct: 6 VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 65 Query: 49 LKP----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 P D+ F +LHG GEDG +Q +L L Sbjct: 66 GAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 125 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125 ++ P+ SG+L SAL MDK+ K G+P V R + S + Sbjct: 126 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 185 Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS+GI ++ Q + L +++++ + +E Sbjct: 186 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVECAVLGN 245 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 SDFY YE KY++ + ++PA IP +I +++Q +A A A+ G Sbjct: 246 DQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVDAAG 305 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF + + +V EIN PG T S++P++ AY+G F EL+ +V+ A Sbjct: 306 LARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359 >gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii] Length = 306 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG SEREVS + ++ +AL+ G +V ++DV V A +A N++HG Sbjct: 9 IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QAILE IPYT +G+ +S ++ DK +SK+ + GVP S Sbjct: 67 TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRSQNYLLDGSQP 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 IS P V KP + GSS+G+ + + + + ++ G L+E++V+G ELT G Sbjct: 127 L-DISIPLVSKPPREGSSVGVNICRTEAEWVSAIEEAKKC--GTSTLVEEFVEGKELTIG 183 Query: 181 VMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++GD L + I Y + + + PA + + VQ A A ++ Sbjct: 184 ILGDQVLPIIHIEPVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAAFKS 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G R D + + F LEIN PGMT S+ P+ A G F +L + ++E + Sbjct: 244 CGTEVYGRVDVML-RNDGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIELSL 302 Query: 298 CLR 300 R Sbjct: 303 AAR 305 >gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681] Length = 309 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58 + V+MGGISSERE+SL +G+ + L+ + ++V + +++ + + D+A L Sbjct: 3 IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG VQ LE L IPYT SG+LAS+L M+K SK ++ + GV + Sbjct: 63 HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122 Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++KP GGSS+GI +++ ++ + + ++ + +LIE Y G Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEAC--SLDQAILIEPYYKGT 180 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E+TC ++ L + I+ S ++ Y+ KY + + ++P I + V+ A ++ Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEEKV-VELPPVIEQRVREAALASY 239 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + C+ +R D + + + LE+N PGMT S+ P+ AA AG +F +LL ++ Sbjct: 240 RLLQCKVYARVDMILCQ--DRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIAS 297 Query: 296 ASCLR 300 + R Sbjct: 298 SLHER 302 >gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanB ligase gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin [Enterococcus faecalis] gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis] gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583] gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis Merz96] gi|741410|prf||2007289A D-Ala lactate ligase Length = 342 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ + F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++ + ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ ++PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P MAA AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLA 339 >gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC 7061] Length = 360 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 142/342 (41%), Gaps = 48/342 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E VSL + A AL F + I + + Sbjct: 6 GLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRMLQ 65 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 A K D+ F +LHG GEDG +Q +LELL IPY +G Sbjct: 66 FEQSAKTFLPTSLNESMFPQPASADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNG 125 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134 +LASA MDK+ K V + G+ + N+ + ++ P +KP Sbjct: 126 VLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + + ++ + +E+ + V Sbjct: 186 MGSSVGISKCRSKEELQTAFDLAFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVGEIA 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA + D YK + +A A +++ G+ R+DF Sbjct: 246 PKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTEK- 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + + G + EL+ +V A Sbjct: 305 GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346 >gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] Length = 313 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 12 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----R 115 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+P PS+ + Sbjct: 72 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +++ +I + ++ ++L+E+Y+ G Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAIEKAFDI--DSEVLVERYIKGK 189 Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V+GDA ++ VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 190 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 249 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+ C G+SRSDF+ + LE N PGMT S+ P+ A AG SF EL ++ Sbjct: 250 AHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 308 Query: 294 EDA 296 A Sbjct: 309 GYA 311 >gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185] Length = 288 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 156/296 (52%), Gaps = 14/296 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV MGGISSEREVSL+SGKA +L G+ IDV + ++ + D A+ H Sbjct: 3 IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIDNEYDFAYLAFH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG VQ +L++L PYT SG AS ++MDK V + + + V + Sbjct: 63 GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDK------VITKKLAESAGVRVAKNYDK 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P VIKP GSS+GI + + G +++IE+ + G ELT Sbjct: 117 VSDIDSYPVVIKPALEGSSVGIFFCHNREEAEKAAGELV----GKKIVIEEMITGDELTV 172 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +PK++FY YE KY+ S H PAKI Y E A H +G Sbjct: 173 GVING-EGIGVLRIIPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVLG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GISRSDF+ KV++LE+N PGMT S+ P++A GY++ +++ MVE Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285 >gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591] Length = 366 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG SSE EVSL S K A++ F V + +D+ + Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + D + P +K Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEFDHAVELAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N +PA + D+++ ++ +A A QA+ CRG++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIELA 350 >gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1] Length = 320 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +L SALSMDK+R+KQV + G+P Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + Q Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 258 FH-SVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A] Length = 310 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSERE+SL G+A +AL AG +D D + L AF +LH Sbjct: 10 VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +QAIL+ L IPYT S +LA AL+MDK+ K+V S G+PV +LV + Sbjct: 70 GRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRF 129 Query: 120 S---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + L +VIKP GSS+G+ +K + + + + +++ E ++ G E Sbjct: 130 ETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARA--KIMAEPWIVGRE 187 Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT G++ D L EI FY Y+ KY + N+ ++ PA I + + +AF A Sbjct: 188 LTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFAAF 247 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 QAIG RG R D + D + + LEIN+ PGMT S+ P A G F L+ ++ Sbjct: 248 QAIGARGWGRVDMIVDAQ-NRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSIL 304 >gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13] Length = 367 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ V P + + P IK Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ L + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVQDRAGFDAALALAF--SFDHKVLVESAIVGREIECAVLGNDEPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N V+PA+I ++ +++ +A A +A+ C G++R D Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ A +G S+ EL+ ++E A Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIELA 350 >gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 313 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 166/304 (54%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S ERE+SL+SG+ A AL+ AGF+V +D + L D+AF LH Sbjct: 10 VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q LE + +PY GI +SA +MDK+++K G+P SI ++R Sbjct: 70 GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +I+ ++ L ++ + +LIE ++ G Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSALDRALTEAFKL--DNAVLIETFMAGT 187 Query: 176 ELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+G+ + V EI +FY +E KY++ S H+ PA++ + VQ++A Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+GC G+SRSD + + LE N PGMT S+ P+ AG SF +L + Sbjct: 248 QAHKALGCCGVSRSDVIL-AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRL 306 Query: 293 VEDA 296 +E A Sbjct: 307 IELA 310 >gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273] gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273] Length = 361 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 109/349 (31%), Positives = 171/349 (48%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG S E E+S+ S +A A+ ++ ++V + + R G Sbjct: 6 VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65 Query: 46 -------------LAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L D+AF VLHG++GEDG VQ +LE L++P Sbjct: 66 LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129 T G+LASAL+MDK +K + G+ V S+ V +S P Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP+ GSS+GI + + + + + + ++LIEQ V G E+ V+G+ +L+ Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHAC--SLDSKVLIEQAVKGREVEVAVIGNDTLEA 243 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + P S+FY YE KY + +PA+IP D+ ++V+ A A++A+GCRG+SR D Sbjct: 244 SPCGEIEPGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRVD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F D + + + EIN PG TPVS++P + A AG F EL ++ A Sbjct: 304 FFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMELTDRLIRLA 352 >gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 316 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 148/303 (48%), Gaps = 11/303 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60 V GG S EREVSL SG+A AL G+ V +D D + +V L DL F LHG Sbjct: 5 VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L+ IPYT A MDK ++ V+ + GV V I + Sbjct: 65 GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFDGSMDQG 124 Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 L V+KP + GS++GI ++ + L ++ + +L++E++++G E Sbjct: 125 VLLELLRRWGRLVVKPCRCGSTVGIGIVDHPSRLDRALDEAF--RYDRRLVVERFIEGRE 182 Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 LT V T P+S FY Y KY+ + ++ PA + + V R A Sbjct: 183 LTVAVFDTPEGPKALPTVEIRPRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAAVE 242 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A++A+GC SR D + + + LE+N PGMT S+ P+ A G+ F E+L + Sbjct: 243 AYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRRIC 302 Query: 294 EDA 296 E + Sbjct: 303 EAS 305 >gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 785 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ------VVSSCGVPVCPSILV 113 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+ + + + S Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K + GSS+G+ ++ D+ + L + +GD++L+E+Y++ Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPALDAAF--TYGDEVLVEEYIE 656 Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G EL+ V G + S Y YE KY+ TH++PA I + +EV++L Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVPSGRYDYESKYTPGGVTHLVPAPISAECRREVEQL 716 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ A GC G++R D L + + +E+N PGMT S+ P+ A G F EL Sbjct: 717 ARRAYAACGCNGLARVDLLLSAE-NQPYVIELNAVPGMTETSLVPDAARAVGIDFPELCE 775 Query: 291 WMVEDASCLR 300 ++ A R Sbjct: 776 KILALAGYHR 785 >gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13] gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetaseB gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13] Length = 302 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 157/299 (52%), Gaps = 8/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + ++MGGISSEREVSL+SG++ + ++ ++VS+I ++ + ++ D A LHG Sbjct: 3 VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 FGEDG VQA L++++IPY+ G L+S+L MDK SK+V+ + + I + Sbjct: 63 KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P +KP GGSS+ + K + I + + ++++IE ++ G E+ Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYDEEVIIESFIKGREI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + K+DFY Y+ + + N LP ++ +Y EV+ +A + Sbjct: 181 TCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFEV 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D + + LE+N PGMT S+FP+ A G S+ + + ++E + Sbjct: 239 LKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296 >gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243] Length = 307 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL+S + ALE+AG+ V+Q+D D+ L D+AF LH Sbjct: 6 VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----R 115 G +GEDG VQ +LE + +PY SG+ +SAL+MDK++SK G+ PS+ + Sbjct: 66 GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GS+LG+ +++ +I + ++ ++L+E+Y+ G Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAIEKAFDI--DSEVLVERYIKGK 183 Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V+GDA ++ VPKSDFY +E KY+ S H+ PA + + + VQ LA Sbjct: 184 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 243 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH+A+ C G+SRSDF+ + LE N PGMT S+ P+ A AG SF EL ++ Sbjct: 244 AHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 302 Query: 294 EDA 296 A Sbjct: 303 GYA 305 >gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708] Length = 351 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 44/340 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S + A+AL +++ + + Sbjct: 6 VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65 Query: 46 ------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L P DL F +LHG GEDG +QA+L L+++P+ SG+L SA Sbjct: 66 GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKGG 136 MDK+ K + G+P + R + S + PY +KP G Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI ++ Q + L +++++ + +E + V Sbjct: 186 SSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDNPKASVIGEITFD 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDFY YE KY+ + +PA +P +++Q A A A+ G++R DF + + + Sbjct: 246 SDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEATGE 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P++ A G SF +L+ +++ A Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 345 >gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 776 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 +AV+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ T Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589 Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + S P V+K + GSS+G+ ++ ++ + L ++ ++G ++L+E+++ Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDEAF--SYGGEVLVEEFIA 647 Query: 174 GIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V G+ S Y YE KY+ S H++PA I + EVQ L Sbjct: 648 GRELTVVVWGETGHAEALPVIEITTTSGRYDYESKYTPGASAHLVPAPISPECTAEVQEL 707 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 708 AVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLCE 766 Query: 291 WMVEDASCLR 300 ++E A R Sbjct: 767 KILEMAGYQR 776 >gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1] Length = 303 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 154/295 (52%), Gaps = 5/295 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSER+VSL+ + AL G V+ D S+ +L D AF LHG+ Sbjct: 5 LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+L+ PY SG S L+++K SKQ++ G+ R D Sbjct: 65 PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP GGSSL + + + + + L + + ++E + G+E+TCG Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPALEAVFAHC--GEAIVEPAIPGVEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I + F+ Y KY+ +T + PA +P ++ VQ + AH+ +G Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 RG SR+D++ +F LE+N PGMTP S+ P+ AA G F L+ ++E Sbjct: 243 RGYSRADYIL-RDDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIEL 296 >gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 375 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 54/349 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 ++ GG SSE EVSL + + A++ ++V+ + V V Sbjct: 9 GIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEAL 68 Query: 46 -LAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 L+ P D+ F V+HG FGEDG +Q +LEL Sbjct: 69 RLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELAN 128 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127 IPY +G++ASA+ MDK K V + G+P + + R + + P Sbjct: 129 IPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGYP 188 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI K + + L ++ ++ + V +E+ + Sbjct: 189 CFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLGNEELMT 248 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V + +FY YE KY + +PA +P + +++ +A A QA+ G+SR D Sbjct: 249 SVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLSRVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F +D + K++ E+N PG TP S++P + AG + EL+ +V+ A Sbjct: 309 FFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357 >gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 348 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 50/345 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50 +AVL GG SSER+VSLS+G A AL + G V +D + L Sbjct: 3 IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ FN LHG+ GE+G +QA+ +LL I Y Sbjct: 63 HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKG 135 T SG L+M+K SKQ+ + G+P +++++ + P V+KP Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ L + S H +++E+Y+ G E G++G L +P Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAI-EIIP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K FY Y+ KY + + PA I D + + + +G +R+DF+ D Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVDE--N 297 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ LE N PGMTPVS+ P+ AA F LL +++++ LR Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342 >gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A] Length = 348 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + V+ GG SSE EVS+ S K +AL + + +D+ +L Sbjct: 8 IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67 Query: 49 LK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D+ F LHG GEDG++Q + + P+ SG+L SA Sbjct: 68 KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127 Query: 89 LSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGS 137 L MDK+ K V S +P P + + +I+ P IKP GS Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195 S+GI + + ++ + +++++E+ ++G EL CGV V Sbjct: 188 SVGITKAYSKEEFITGIEFAA--KYDERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++D+Y+YE KY++ S+ ++PA + ++I ++Q+LA A +AI G++R DF + ++ Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ ++E A Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346 >gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383] Length = 342 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 159/334 (47%), Gaps = 38/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAHLK 50 +AVL GG S ER+VS+SS AL AG V ID R + + Sbjct: 8 IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67 Query: 51 P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 P D+AF LHG GEDG +QA+L+L +PYT SG + Sbjct: 68 PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++M+K +K++ SS G+ +++ D + P ++KP + GS++G+ ++ Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + Q+++EQY+ G ELT GV+G +L V EI + + Y KY Sbjct: 188 PDELESAVRLAR--RFDTQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + PA +P + QR+A AH + G SR+D D ++ LE+N P Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLDAQ-GILWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 GMT S+ P+ AA +G +F +L + A R Sbjct: 305 GMTATSLLPQSAAASGIAFPQLCEQIC-LAGINR 337 >gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10] Length = 359 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 51/342 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E +VSL + KA +AL+ ++V I + + + Sbjct: 6 GLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLLK 65 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG +Q +LE+L+IPY +G+ Sbjct: 66 FEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKG 135 LAS+ MDK+ K + + G+ + R + ++ P +KP Sbjct: 126 LASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIA 193 GSS+GI Q + + ++ ++++E+ +DG E+ + V Sbjct: 186 GSSVGISKASNRQELVQAFQTAF--DYDRKVIVEEGIDGREVEIAVLGNDEPECSVVGEI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 VPK+DFY Y+ KY ++ ++PA+I + Y+ ++ +A + +A+ C G+ R+DF Sbjct: 244 VPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFLT-K 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E+N PG TPVS+FP + +G S+ L+ M+ Sbjct: 303 DSTILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMIRL 344 >gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272] gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273] Length = 361 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+E +VSL + A AL F++ I + V Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 +LAS+ MDK+ K + + + + + P +KP Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 187 LGSSVGINKCKDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADFFLT- 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + +L+ ++ A Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELINLA 347 >gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602] Length = 365 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V+ + +D+ + Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131 + SG+L SA+SMDK +K+++ G+ V P + + R + P IK Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L ++ + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSDEDGYQRALDKAF--SFDHKVLVESAIKGREIECAVLGNDHPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N + +PA +P + + ++ +A A Q + CRG++R D Sbjct: 244 CGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ A +G S+ EL+ ++E A Sbjct: 304 FLTEQ-GDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIELA 350 >gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704] Length = 356 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 143/351 (40%), Gaps = 51/351 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSL SG L + G K +DV Sbjct: 3 IIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYV 129 ++L I YT ALSMDK+ +KQ+ GVP + T + P V Sbjct: 123 DILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP GGSS+G+ ++ ++ + S NH D+++IE Y+ G E C ++ +L + Sbjct: 183 IKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI F P + ++QR A + + +R+DF+ Sbjct: 243 IEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDVYARADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D K + LE+N PGMTP S+ P+ A G + +L ++E++ R Sbjct: 303 VDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353 >gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6] Length = 364 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ + F+ I +D++ L Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNSENPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKANQQVVETTGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I + + + + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNRLGLPMFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + +++L+E V G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVGSEAEYHAAVELAL--GFDEKVLLESAVQGREIECAVLGNDNPIASG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I + + ++RLA A + +GC G++R D Sbjct: 244 CGEIVVSNGFYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLGCAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ AG S+ EL+ ++E A Sbjct: 304 FLT-DDGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350 >gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627] Length = 364 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I + Q + P +K Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDDPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1] Length = 360 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S+E E+S+ S K+ A+ + +KV + + + Sbjct: 6 VALIFGGRSTEHEISIISAKSIAANISAERYKVIPLYITHQGTWLCEGIARDILNLDLSA 65 Query: 46 -------------------LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLE 76 A KP ++AF LHG +GEDG +Q L+ Sbjct: 66 LLRNSSPEAAAMALDRMVEEAEQKPFNLDFRAIGIEVAFLTLHGTYGEDGRIQGFLDTCN 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127 IPYT G+LASAL+MDK +K V+ G+ V PSI + + P Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEKFIYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185 + +KP GSS+GI + + +P L + + ++++E+ + G E+ V + Sbjct: 186 FFVKPANLGSSIGISKVHHREQLPAALKSAC--SLDSKIVVEKAITGREIEVAVLGNDEP 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + V P SDFY Y KY ++ +PA+IP ++ EV+ +A A++A+GCRG+SR Sbjct: 244 EVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D + E+N PG T +S+FP + A +G+SF EL +++ A Sbjct: 304 IDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPELAERLLQLA 354 >gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] Length = 304 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VSL +G+ + L+ + ++V I ++ LV D+A LHG Sbjct: 3 VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 +GEDG +Q LE L +PYT S +L+S + MDK SK+++ + I Sbjct: 63 EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 +D + P V+KP GGSS+G+ ++ S+ L W +++IE+Y+ G E+ Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ ++F+ Y KY + + + ++P Y+ V A ++A Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + + +E+N PGMT S+ P+ A AG S+ +LL ++E + Sbjct: 239 LKCSVYARVDIII--KDEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296 Query: 298 CLR 300 +R Sbjct: 297 QVR 299 >gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 306 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 151/309 (48%), Positives = 213/309 (68%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 +AVLMGG L SSG ACA LE G+ V+++DVD + VL L+P Sbjct: 6 IAVLMGG--------LSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPH 57 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + FN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS + Sbjct: 58 IVFNALHGSFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYV 117 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++R + SQH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ Sbjct: 118 MDRCAIGSQHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYI 177 Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELTC V+GD LDV EI FY Y+ KY S S H+ PA++ L+IY++VQR++ Sbjct: 178 PGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMS 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQAIGCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W Sbjct: 238 LAAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKW 297 Query: 292 MVEDASCLR 300 +VEDASC+R Sbjct: 298 IVEDASCMR 306 >gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_40H22] Length = 362 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 51/346 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50 +L GG S+E EVS+ S ++ A++ ++V + R+ L K Sbjct: 8 LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67 Query: 51 --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ +LHG GEDG VQ +LEL + Y +G+ Sbjct: 68 NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 ASA+ MDK ++ V + G+ +++ R D + + P +KP+ Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193 GSS+GI +S+ + ++S++ ++ + EL C V D V Sbjct: 188 GSSIGISKAHDTKSLESAIDLAASYDV-KMMVETSVENARELECAVLGNDDPKASVIGEI 246 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P ++FY Y KY S ++PA++P I E+QR++ A +AI C G+ R DFL P Sbjct: 247 IPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP- 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S +F EIN PG TP+S++P + +G + EL+ ++E A Sbjct: 306 SGDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIELALAR 351 >gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145] Length = 308 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 9/298 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A +AL D L L D AF VLHG Sbjct: 9 VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLSLGVDRAFIVLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NR 115 GEDG +Q L+ L +PYT S +L AL+MDK+R+KQ+ S +PV PSI++ Sbjct: 69 RGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQW 128 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + ++KP GSS+G+ V + + + ++ + +L+E++++G Sbjct: 129 DAAQILKQLGDKVIVKPALEGSSIGMSVASEAGELDAAIREALRYQSD--VLVERWINGK 186 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E T ++ D +L V + P Y + KY + ++ + PA + + + ++ LA LA Sbjct: 187 EYTVALLNDEALPVIRLQTPHQF-YDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLAF 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AI RG R D + D + F LE N PGMT S+ P A G SF +L+ ++ Sbjct: 246 SAIDGRGWGRIDAMRDDE-GQWFLLEANAVPGMTEKSLVPMAAKQYGLSFEQLVWNIL 302 >gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1] Length = 365 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ L Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + + ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAF--SFDRKVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+++L+ +++ A Sbjct: 304 FLT-NDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLIDLA 350 >gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125] Length = 305 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSLSSGK AL+ G +V ID L L DL F LHG Sbjct: 3 IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG VQA+L+LL IPY +G+ SAL+MDK ++K G+ V ++++ FT D Sbjct: 63 RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P V+KP + GS++G+ V + ++ + + ++ H D +LIE+++ G E+ Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEEELLQGI--EEAFRHDDTILIEEFIAGTEV 180 Query: 178 TCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 T G+ VPK+ Y YE KY+ S H++PA+I + VQ+ A A Sbjct: 181 TVAVLGNKGEERSLPVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAAVRA 240 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 HQA+GC SR DF+ L++N PGMTP S++P+ A G S+ E++ V Sbjct: 241 HQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVN 300 Query: 295 DA 296 + Sbjct: 301 LS 302 >gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843] gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 352 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 144/341 (42%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS++S ++ A + V +D++ Sbjct: 6 VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65 Query: 46 -------------LAHLKPDL-----AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + P++ F +LHG GEDG +Q +L L+ + + SG+L S Sbjct: 66 GQPLAIESNIKVNIWQFPPEVREMEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKG 135 L MDK+ K ++ G+P + + I P IKP Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + Q + L ++S++ + IE + + Sbjct: 186 GSSVGISKARNRQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ S+ V+PA IP I +V+ +A A +A+ G+SR DF + + Sbjct: 246 DSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVENTG 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T S++P++ G F +L+ +V+ A Sbjct: 306 EVLINEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLA 346 >gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 369 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 165/347 (47%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKP- 51 + V+ GG S E EVSL S ++ + L ++V+QI + +V L + Sbjct: 7 VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66 Query: 52 ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG FGEDG +Q +LE+ + Y Sbjct: 67 GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKP 132 +G+L SA+ MDK K V+ + G+PV S+LV R + L P+ KP Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189 GSS+GI + LL+++ + ++LIE+ V IE++ + V Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAA--RYDRRILIERGVPDAREIEVSVLGNDEPIASV 244 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VP +FYSYE KY S ++PA + + + +++LA A++AI C G++R DFL Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + + F EIN PG T +S++P++ +G S+ L+ ++E A Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELA 351 >gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthase A gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 158/353 (44%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG S E EVSL S + L+ F+V + +D++ L+ Sbjct: 7 VVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAAL 66 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F V+HG EDG VQ +LEL ++ Sbjct: 67 PILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADV 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128 Y SG+LASA+SMDK +K++ G+PV P ++ R + +S P Sbjct: 127 AYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPV 186 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI +K ++ L + + ++L++Q +D E+ V+ D +L Sbjct: 187 FVKPCNMGSSVGIHKVKTQDALEAALDDAF--RYDVKVLVQQGIDAREIEVAVLEDETLF 244 Query: 189 VTE----IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +FYSYE KY + V PA++ + V+ LA A+ C G Sbjct: 245 ASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGF 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF D + + + EIN PG T +S++P+M +G + ELL +V+ A Sbjct: 305 ARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357 >gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 352 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG SSE EVS S S ++ ++ I + + + Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V + Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G L+ ++E A Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIELA 348 >gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 356 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis str. 168] gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis] gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str. 168] Length = 354 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 53/342 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46 GG S+E VSL + A AL F + I + V Sbjct: 2 YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ F +LHG GEDG +Q +LELL IPY +G+L Sbjct: 62 GGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVL 121 Query: 86 ASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 AS+ MDK+ K + + + + + + + P +KP G Sbjct: 122 ASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPANLG 181 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAV 194 SS+GI + + + + + ++++E+ ++G E+ D V Sbjct: 182 SSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIA 239 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA + + Y + +A A +AI G+ R+DF Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTA-D 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 299 GEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 340 >gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9] Length = 377 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 154/355 (43%), Gaps = 61/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S E EVSL + A + + ++V + A + Sbjct: 7 VGLIYGGKSGEHEVSLRTALAVMGEFDFSRYEVKPFYITTDGQWRTADVLLAPPADVAAL 66 Query: 50 -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72 D+ F +LHG FGEDG +Q +L Sbjct: 67 RLGGAEQADAAAIGSGGALAPVFQGLQAGSASHGGNGAVDVIFPLLHGTFGEDGTIQGLL 126 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------- 125 E+ IPY +G+LASA+ MDK+ K+V + G+P C NR D + Sbjct: 127 EMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRYFNRTQWDKETDYYVTEIEVS 186 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P IKP GSS+GI K + + + + + ++++E++VD E+ V+G Sbjct: 187 LGYPCFIKPANLGSSVGISKAKNREELIEAINYAF--RYDRKVIVEEFVDAREIEVSVLG 244 Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + P +DFY Y+ KY S +PA IP + V+ +A A+QAI Sbjct: 245 NDEPKASVPGEIRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEAVREMAIRAYQAIDGS 304 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+SR DF ++F E+N PG TP S++P M G +RELL ++E A Sbjct: 305 GLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQETGLPYRELLDTLIELA 359 >gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 312 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 164/306 (53%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E E+S +G A AL+ G+ ++++ + + + FN LH Sbjct: 6 IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGEDG++Q L++L IPYT SG+LA+A++MDK SK+V + G+ S R+ M Sbjct: 66 GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + S P V+K GSS+G+ +++ ++ L ++ ++ D++L+E+++ Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAF--SYNDEVLVEEFIR 183 Query: 174 GIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V G+ S Y YE KY+ STH++PA++ + KE+Q L Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYTKGASTHIIPARVSAEKTKEIQDL 243 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A GC+G++R D + + +E+N PGMT +S+ P+ G F EL Sbjct: 244 AIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELCE 302 Query: 291 WMVEDA 296 ++E A Sbjct: 303 RILEMA 308 >gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181] Length = 302 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 146/298 (48%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ERE+SL SG+A ++L + +D LA F LHG Sbjct: 9 VAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAE--CSRVFICLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q+ L+ ++IPYT SG AS L MDK+ SK + + + + Sbjct: 67 KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEGMTYD 126 Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + IK GSS+GI + K Q + + ++ E + G E T Sbjct: 127 EVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAFESAYKV--DNTVIAEMMIFGEEFT 184 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ S PK+DFY YE KY ++ + PAK+ + ++ +L A A+ Sbjct: 185 LPILDS-SPLSIVEIRPKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNAL 243 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G R DF+ + +VF +E+N PGMT S+ P A +G SF L+L +++ A Sbjct: 244 GCSGWGRVDFMINNQ-NEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300 >gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC 27755] Length = 355 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 143/351 (40%), Gaps = 51/351 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSL+SG L + G + +D+ Sbjct: 3 IIVLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EIAKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129 +LL I YT ALSM+K+ +KQ+ GVP + S+ P V Sbjct: 123 DLLGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS+G+ + ++ + +S N ++L+IE Y+ G E V+ +L + Sbjct: 183 VKPCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI F + P I + + + R A A+ +R+DF+ Sbjct: 243 VEIIPKDGVFNYENKYQAGGAQEICPPVSIDEETQQRMMRAGEEAFAALRMDVYARADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + + LE+N PGMT S+ P+ A AG + EL ++E++ R Sbjct: 303 IDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353 >gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253] Length = 364 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + + ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C] Length = 306 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 151/309 (48%), Positives = 215/309 (69%), Gaps = 17/309 (5%) Query: 1 MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 +AVLMGG L SSG ACA LE G+ V+++DVD + +L L+P Sbjct: 6 IAVLMGG--------LSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPH 57 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 +AFN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS + Sbjct: 58 IAFNALHGSFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYV 117 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++R + SQH + PPYVIKP+ GSS+G+I++ D++ P + SS D++++E+Y+ Sbjct: 118 MDRCAIGSQHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYI 177 Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 G ELTC V+GD LDV EI FY Y+ KY S S H+ PA++ L+IY++VQR++ Sbjct: 178 PGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMS 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +AHQAIGCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ +++ W Sbjct: 238 LVAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKW 297 Query: 292 MVEDASCLR 300 +VEDASC+R Sbjct: 298 IVEDASCMR 306 >gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 300 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 7/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG S ER+VSL+ AL+ G +V +D+ ++ + D A LHG Sbjct: 5 LIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG +Q +LE + +PY SG+ S L+++K SKQ ++ G+ F Sbjct: 65 PGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKG--GLYFPQGRL 122 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 H + PP + KP +GGSSL + + + + L Q S + ++L+E+ ++G E++C V Sbjct: 123 HHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSEH---EILVEELINGHEVSCAV 179 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + L I K DF+ Y KY + + PA I + + +Q ++ AH+ +G R Sbjct: 180 LDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRILGLR 239 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SRSDF+ D ++ LE N PGMT S+ P+ A AG F EL+ ++ A Sbjct: 240 HYSRSDFMLDQQDN-IYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLA 293 >gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101] gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 366 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 59/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S K A+AL +++ I + ++ Sbjct: 6 VGLLFGGCSGEHEVSIRSAKVIATALTKVQNKEKYELIPIYIQKNGLWQPSDFSQKVLNS 65 Query: 46 ---------------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73 L + P D+ F +LHG GEDG +Q +L+ Sbjct: 66 DHPSLLQLTNENNHDLNTSLTQQSSSPLWQIPPQAAQVDVWFPILHGPNGEDGTIQGLLK 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQ 121 L+++P+ SG+L SA+ MDK+ K G+P +V R + + Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQVVTRSQIWSNSCVFPKLCDDIE 185 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +KP GSS+GI ++ + L ++S++ + +E Sbjct: 186 TTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAASYDRRIIVEAGVEAKELECAVLG 245 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + SDFY YE KY+ + +PA++ I +++ +A A A+ Sbjct: 246 NDMPKASIVGEITYNSDFYDYETKYTEGKADLHIPARVSEAIATKIKEMATQAFLAVDAA 305 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF + + ++ EIN PG T S++P + +G F EL+ +++ A Sbjct: 306 GLARVDFFYVEKTGEILINEINTMPGFTSSSMYPMLWEASGIPFSELVDTLIQLA 360 >gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 316 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 19/309 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVLHG 60 VL GG S EREVSL+SGKA A GF V ++ + V ++ D+ F LHG Sbjct: 5 VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111 ++GEDG +QA L+ +IPYT SG A L+M+K+ SK G+P + Sbjct: 65 SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124 Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 L VIKP + GS+LG+ VI + + +S ++ ++ Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLAS--SYDSLIIA 182 Query: 169 EQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E+Y+ G E+T V D VPK+ YSY+ KY+ NS + +PA++ I K+ Sbjct: 183 ERYISGKEITVAVWDDGKPQAFPIIEIVPKNSLYSYKAKYTPGNSAYFVPAQLEDSIAKK 242 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 Q A +AH ++GC SR D D + LE+N PG+T S+ P+ A G+ F Sbjct: 243 AQEAALMAHISLGCELYSRVDMRLDTQGN-PYVLEVNTVPGLTSTSLVPKAAKAIGWDFD 301 Query: 287 ELLLWMVED 295 + ++++ Sbjct: 302 RFVKELIQN 310 >gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 361 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 153/350 (43%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG S E EVSL S +A +AL+ + V I + R+ L+ P Sbjct: 6 VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQW-LSGGDPLLALEQQAD 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ VLHG FGEDG +Q + E + Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128 PY G+LA+++ MDK K ++ G+P P LV R +Q + P Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI + + + + + ++++EQ ++ E+ ++G+ Sbjct: 185 FVKPANLGSSVGISKVSNRAEL--ATGMAEAAGYDRRIVVEQGINAREIEVAILGNDDPK 242 Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + P +DFY Y KY + +PA++ ++++ +A A +AI G++R Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + ++ EIN PG T +S +P++ G + ELL +++ A Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352 >gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel] Length = 336 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 160/300 (53%), Gaps = 5/300 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G + + +D++R L + PDL +N LHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +L++L + YTHS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134 Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP+ GGS++G+ I L + ++L+E+Y+ G E+ Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLD--LSVHADALEGRMLVEEYIPGQEVHT 192 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E + Y Y+ KY HV PA + D+Y A +Q +G Sbjct: 193 AVFLGRAIGTMEFLF-EGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298 CR +SR DF +D ++ + LEIN PGMT S PE + G F +++ ++V+DA C Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311 >gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 13/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S+EREVSLS AL + ++V + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L + H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPALETAF--AHDDQVMVEQFVAGR 186 Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T + +P + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+ + +G SR+D + ++ LE N PGMTP S+FP+ AA G F LL Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFGALLDR 304 Query: 292 MVEDASCLR 300 +++ A R Sbjct: 305 LLQLAREDR 313 >gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1] Length = 362 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S+E EVS+ S + A AL+ + F + + V + Sbjct: 7 VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66 Query: 46 ----LAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 A KP D+AF +LHG +GEDG VQ + ++L +PY Sbjct: 67 STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136 +++SA MDK K++ G+P + + + P IKP G Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKLGLPMFIKPANAG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIA 193 SS+G+ +K + L + + +++IE+Y+ G E+ C Sbjct: 187 SSIGVHKVKTEAEFGPALEDAL--RYDRKVIIERYIQGREIECSVLGTTDAPKASTAGEV 244 Query: 194 VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + DFYSYE KY + +PAKI +Q LA A+GC G++R DF Sbjct: 245 ITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLTE 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T +S++P+M ++G ++ +L+ +++ A Sbjct: 305 -SGALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLIDLA 347 >gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 361 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 11 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 71 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 191 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 308 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 346 >gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ST398] Length = 356 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635] Length = 356 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177] Length = 393 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 393 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 360 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus D-Alanine:d- Alanine Ligase Revealed By Crystallographic Studies Length = 364 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MW2] gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MSSA476] gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 356 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus N315] gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus COL] gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122] gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH9] gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JH1] gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. Newman] gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu3] gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 132] gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MR1] gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus N315] gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122] gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus JH1] gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781] gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763] gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719] gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115] gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300] gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224] gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948] gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937] gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3] gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus ED98] gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus TW20] gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102] gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765] gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117] gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981] gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754] gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819] gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796] gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus JKD6159] gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS03] gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS01] gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11] gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46] gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 356 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480] Length = 342 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AIFSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++ + ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQVIEKGGKPEARTLTYPVFVKPARSGSSFGVTKVNS 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ ++PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9 D-Ala:d-Ala Ligase Length = 364 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A + C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] Length = 779 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 157/310 (50%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SGKA AL G+ + ++ + ++ + L+P + FN LH Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LV 113 G +GEDG++Q L++L +PYT SG+ A+AL+MDK +K++ + G+ Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P V+K + GSS+G+ ++ + + + L +G + L+E+++ Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEELNAALDDVF--TYGREALVEEFIR 650 Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V G S Y YE KY+ STH++PA + + + VQ + Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITTASGRYDYESKYTPGASTHIVPAALSKECTEAVQAI 710 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A A GC G +R D + + + +E+N PGMT S+ P+ A G F EL Sbjct: 711 AVRAFTACGCSGAARVDIMLSEEE-QPYVIEVNAVPGMTETSLVPDAARAVGMEFPELCE 769 Query: 291 WMVEDASCLR 300 ++ A R Sbjct: 770 KILTMAGYYR 779 >gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis] gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1] gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392] gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661] gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis] Length = 342 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 154/341 (45%), Gaps = 52/341 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+SSER+VS SG A AL + G + +DV Sbjct: 3 IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE G VQA Sbjct: 63 VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 +L I YT + L+SA++MDK +K V+ GVPV + + P ++KP Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GGSS+G+ ++ + + + L + W D++++EQ++ G E + + + Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFS-DGVIEGKALPIIE 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 PK FY Y+ KY++ ++ PA+I ++++ A +A++A+G +R DF+ D Sbjct: 240 IAPKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMD- 298 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ LE N PGMTP S+ P+ A G F +L ++ Sbjct: 299 KDENIYCLEANTLPGMTPTSLLPQEAKVTGMDFEDLCEKLI 339 >gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603] Length = 328 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 30/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41 +A+L GG S E EVS+ S + A+ L +KV I D+D++ Sbjct: 4 IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L +K D AF +HG GEDG +Q ++L IPY SA++M+K +K +V Sbjct: 64 SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123 Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + + P IKP GGSS+G+ + ++P L Sbjct: 124 NGIEGLHTAKSMQLFQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQALE 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ Q+L+E+++ G E + + G+ + + +F+ YE KY+ + Sbjct: 184 KAFH--EDHQILVEEFIKGREFSIGIVRLHGELKVLPATEIISSKEFFDYEAKYTDGVTQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA + + K + R+ + + C G++R DF+ S+ +++EIN PG T S Sbjct: 242 EITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQTVNS 301 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 + P+ AG ++ ++E A Sbjct: 302 LIPQQVRAAGMDIKDFYSALIEGA 325 >gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM 12042] Length = 350 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 152/340 (44%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E VSL S AL+ + V +I +D L Sbjct: 7 VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG +Q + EL IP+ G Sbjct: 67 TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSL 139 + AS L MDK S Q+ G+ V P ++ +D + + P +KP +GGSS+ Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPK 196 GI I + + + + H ++LIE+ V G E+ C ++ + Sbjct: 187 GITKINTWEELDAA--CACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 SDF+ YE KY ++ PA++P + ++++RLA + C+G+ R D P ++ Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + EIN PGMT S +P M AG SF +L ++E+A Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121] gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121] Length = 320 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 13/304 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNV 57 V+ GG +EREVSL SG +AL+++G++ + +D+ + L DLAF Sbjct: 10 VIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAFIA 69 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114 LHG GEDG +QA+LEL+ PYT S LA +MDK+ SK+ GVP + Sbjct: 70 LHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPTPTYLAFRAPD 129 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P ++KP + GS++GI + L ++ + +L+EQ++ Sbjct: 130 ASDIDAIEDELAYPVIVKPSREGSTIGINKANDRTQLESALAKAR--EYDSDVLVEQFIA 187 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G E T ++ D + V + Y Y+ KY + ++ ++LP+ + D VQ++A Sbjct: 188 GPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKIAL 247 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+Q++GC G R D + D + LE+N PGMT S+ P AAY S+ L+ + Sbjct: 248 DAYQSLGCSGWGRVDVMQDQA-GVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALVEKI 306 Query: 293 VEDA 296 + A Sbjct: 307 AQAA 310 >gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium] gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium] gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101] Length = 343 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102] gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102] Length = 366 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 58/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49 + +L GG S E EVS+ S +A A AL + +++ + + + Sbjct: 6 VGLLFGGRSGEHEVSIKSARAIAKALSVDENASKYEILPFYIQKDGRWLAGEAPQKVLET 65 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F VLHG GEDG +Q +L L Sbjct: 66 GSPLLEAEQSTSEGNLTSNPQVQTLSKWESPSQVAQVDIWFPVLHGPNGEDGTIQGLLTL 125 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125 +++P+ SG+L SA+ MDK+ K G+ + R + S + Sbjct: 126 MQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYKAITRAQVWSNPCVFPKLCDEIEA 185 Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS+GI ++ Q + L ++S++ + +E Sbjct: 186 ALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAASYDRRLVVEAGVVAREVECAVLGN 245 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V SDFY YE KY+ + ++PA IP I +++Q +A A A+ G Sbjct: 246 DQPQASVVGEISYDSDFYDYETKYTEDRADLLIPAPIPDAIARQIQDMALQAFAAVDAAG 305 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF + +++V EIN PG T S++P++ A++G SF EL+ +++ A Sbjct: 306 LARVDFFYVEATQEVLINEINTLPGFTATSMYPQLWAHSGVSFPELVDRLIQLA 359 >gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon] gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12] Length = 320 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +LASALSMDK+R+KQV + G+P Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + Q Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H +GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 258 FH-GVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 314 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ V L L ++ F LH Sbjct: 11 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 71 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130 Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+KP GS++GI ++K+ + + + ++L+E+Y+D Sbjct: 131 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRVFKVE--SRILVEEYLD 188 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM ++ V P S Y + KY+ + +++PA I ++ E+Q +A Sbjct: 189 GEEFTVPVMNGKAMPVI-QICPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 247 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C G+ R D + + LE N PGMT S+ P+ AA G SF +L ++ Sbjct: 248 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 306 Query: 294 EDASCLR 300 E A + Sbjct: 307 EGAGLNK 313 >gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.] Length = 312 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 164/299 (54%), Gaps = 13/299 (4%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE 64 GGIS EREVS SG AL+ + V + D + +++ D A +LHG FGE Sbjct: 3 GGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPFGE 62 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDS 120 DG +Q +L+LL+IPY SG+L SA++M+K +KQ+ G+PV P I+ Sbjct: 63 DGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYKTC 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-- 178 + + P+++KP+ GGSS+G+ ++K D+S + + S D +LIE +++GIE+T Sbjct: 123 EKRLGSPFIVKPVSGGSSIGVSIVKSDKSFNEAVESAFSC--DDTVLIETFIEGIEITGG 180 Query: 179 CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +P F+ Y KY + + + PA+I + ++ Q A +AH+ Sbjct: 181 VIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMAHK 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C+G SR+D + ++++ LE N PGMT S+ P+ A AG SF +LL ++E Sbjct: 241 ALFCKGYSRTDMIL--SGKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIEL 297 >gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842] gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1] gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3] Length = 342 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB] gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB] Length = 365 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ L Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ + V + + P IK Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + + ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAF--SFDRKVLIEQGIKGREIECAVLGNDAPEASP 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+R+L+ +++ A Sbjct: 304 FLTDA-GEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLIDLA 350 >gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 377 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 79/360 (21%), Positives = 130/360 (36%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE +S + A++ + V + + S VL PD Sbjct: 14 VAVVFGGRSSEHAISCITAANVLQAIDRDKYDVVPVGITTSGHWVLESADPDRLSITDGK 73 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F +LHG +GEDG +Q +LE+ +I Sbjct: 74 LPEVDVTAAPVLFGADRELVVSEPDQVPSTLGEVDVVFPLLHGPWGEDGTLQGLLEMSDI 133 Query: 78 PYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYV 129 Y SG+LASA+ MDK K V + + + + P Sbjct: 134 RYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYVVIRDRDWTRDPQACRTAVDQLGYPVF 193 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSSLGI + + + ++ + + + + G Sbjct: 194 VKPARGGSSLGISKVTSLDELDAAIAEARAHDPKVIVEASVKNPREIEVGVLGGLNGGLP 253 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL----------PAKIPLDIYKEVQRLAFLAHQAIG 239 + + + ++ PA +P I E++ A A AI Sbjct: 254 QVSVCGEVAVSGGGHDFYDFETKYLPEGEQYTALSVPADLPEQIAAEIRAKALTAFDAIE 313 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DF D +V EIN PG TP S+FP + A +G + L+ ++ A Sbjct: 314 GEGLARVDFFVDE-DGRVLINEINTMPGFTPTSMFPRLWAASGMDYPSLVDHLLTLAQTR 372 >gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299] Length = 356 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGVKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42] gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42] Length = 354 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 141/342 (41%), Gaps = 53/342 (15%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------- 45 GG S+E VSL + A AL F + I + Sbjct: 2 YGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQLEQ 61 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F +LHG GEDG +Q +LELL +PY +G+L Sbjct: 62 NGESFALSALNREMFPEASPDEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVL 121 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 AS+ MDK+ K + + G+P + + + P +KP G Sbjct: 122 ASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLG 181 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAV 194 SS+GI + + + + + ++++E+ + G E+ + Sbjct: 182 SSVGISKCRNREELEKAFELAF--EYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA 239 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK+DFY Y+ KY ++ ++PA++ + Y E+ +A A +AI G+ R+DF Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLT-ND 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +VE A Sbjct: 299 GQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 340 >gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227] gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227] gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83] gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74] Length = 364 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLRLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] Length = 393 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 375 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 157/352 (44%), Gaps = 59/352 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50 ++ GG S E +VSL + A L+ A ++++ + R + L+ Sbjct: 8 GLIYGGKSGEHDVSLRTAFAVMGELDYAKYEITPFYITRLGEWRVGSMLGGQPGAIDELR 67 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+ F +LHG FGEDG +Q +LE+ Sbjct: 68 LAPVDGAPVPIVPDLPLAPLLDRLAGGALPGGGQPIDVVFPLLHGTFGEDGTIQGLLEIA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126 +IPY +G+LASA MDK+ K++ + G+P C NR + + + Sbjct: 128 DIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFRYFNRAQWEKDASFFIMECEVALGY 187 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI K + + + ++++E++VD E+ V+G+ Sbjct: 188 PCFVKPSNLGSSVGISKAKNRDELIAAIDFAF--RFDRRVIVEEFVDAREIEVSVLGNDD 245 Query: 187 LDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 ++ P ++FY Y+ KY ST +PA IP V+ +A A AI G+S Sbjct: 246 PKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPANIPNKTADAVRDMALRAFLAIDGAGLS 305 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF ++F E+N PG TP+S++P M +G +++LL +++ A Sbjct: 306 RVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMWKESGLPYKDLLDKLIDLA 357 >gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus MRSA252] gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus CGS00] Length = 356 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK2000] gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. FRIK966] gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGFKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568] Length = 367 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ + P + + P +K Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAF--SFDHKVLVESAIVGREIECAVLGNDEPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N PA I ++ +++ +A A +A+ C G++R D Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ A +G S+ +L+ ++E A Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIELA 350 >gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M718] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 785 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 165/310 (53%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS SG A AL G+ ++++ + + L P + FN LH Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ------VVSSCGVPVCPSILV 113 G +GEDG++Q L++L IPYT SG+ A+AL+MDK+ +K+ + + + S Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + S P V+K + GSS+G+ ++ +D+ + L + ++GD++LIE++++ Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPALDAAF--SYGDEVLIEEFIE 656 Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V G + S Y Y+ KY+ STH++PA + EV++L Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIRSVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQL 716 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ A GC G++R D L + + +E+N PGMT S+ P+ A G F EL Sbjct: 717 ARRAYAACGCSGLARVDLLLSAE-NRPYVIELNAVPGMTETSLVPDAARALGIEFPELCE 775 Query: 291 WMVEDASCLR 300 ++ A R Sbjct: 776 RILALAGYRR 785 >gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911] Length = 357 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 141/339 (41%), Gaps = 45/339 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VS+ + A AL+ F + + + V Sbjct: 6 GLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQLE 65 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F +LHG GEDG VQ +LELL +PY +G+LA Sbjct: 66 FSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGS 137 S+ MDK+ K + + G+P + R + P +KP GS Sbjct: 126 SSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + ++ ++ + IEL + V VPK Sbjct: 186 SVGISKCTNREELAAAFEEAFQFDRKIIVEEGVTAREIELGVLGNDEPECSVAGEIVPKK 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY ++ ++PA+I + Y + ++ A +A+ C G+ R+DF KV Sbjct: 246 DFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFFLT-RDGKV 304 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S+FP + + G + +L+ +V A Sbjct: 305 MINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 343 >gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649] Length = 382 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 65/362 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS ++ + SAL+ + V I + + VLA P Sbjct: 20 VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L+L Sbjct: 80 IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 ++ Y SG+ ASA+ MDK K V ++ G+PV P ++ + Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + + H ++++EQ + G E+ CGV+ Sbjct: 200 PVFVKPARAGSSMGISKVDSPDGLRAAVEAAR--EHDPKVIVEQGIVGREIECGVLDGHG 257 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAI 238 D + + + + PA + DI +++ ++A +A A Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G++R DF + + EIN PG TP S++P M A AG ++ +L+ ++ A Sbjct: 318 GCEGLARCDFFLT-DTGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLIDELIALAME 376 Query: 299 LR 300 R Sbjct: 377 RR 378 >gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942] Length = 361 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG S+E VSL + A AL F + I + Sbjct: 6 GLVYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWQRGARLTEPVSNVKMLQ 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG +Q +LELL IPY + Sbjct: 66 LEQNGSSFSPAALNKEMFPGDSSKENEAIDVVFPLLHGPNGEDGTIQGLLELLNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+LAS+ MDK+ K + + + S + + P +KP Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLSQAKYAAFLKKDWSRSSEECCEQVEKELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ V G E+ + V Sbjct: 186 NLGSSVGISKCRSREELEKAFELAF--QYDRKVVVEEGVIGREIEIGVLGNDEPKCSVVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK+DFY Y+ KY ++ ++PA++ D Y ++ +A A +AI G+ R+DF Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLIIPAEVTDDQYAKISDMAIKAFKAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + AG + +L+ +V+ A Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGIEYADLIEQLVDLA 347 >gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii] Length = 306 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG +EREVS + ++ +AL+ G +V ++DV + +A N++HG Sbjct: 9 IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVH--GPDFVVPEGVFIAMNLIHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 FGEDG +QAILE IPYT +G+ +S ++ DK SK+ + GVP S + Sbjct: 67 TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRSQNYKLDGSEP 126 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I+ P V KP + GSS+G+ + + + + +G L+E+++DG ELT G Sbjct: 127 LS-ITIPLVSKPPREGSSVGVNICRTGEE--WAKGIEEALKYGTTTLVEEFIDGKELTVG 183 Query: 181 VMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V+GD L + I Y + + + PA++ K VQ A A Q+ Sbjct: 184 VLGDQVLPIIHIEPVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAAFQS 243 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G R D + + F LEIN PGMT S+ P+ AA G F +L + ++E + Sbjct: 244 CGTEVYGRVDVML-RNDGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIELSL 302 Query: 298 CLR 300 R Sbjct: 303 AAR 305 >gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus 68-397] gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus E1410] gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus M876] gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WBG10049] gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] Length = 356 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 393 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 43 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 223 GISKCSNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378 >gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 5/295 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 ++ GG S ER+VSLS + +ALE G +V+ D R++ +L + D AF LHG Sbjct: 5 LIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLHGQ 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+LE +PY SG S L+++K +K+V G+P + D Sbjct: 65 PGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P IK GGSSL + + + L + G + +IE V+G+E+TCG Sbjct: 125 EPPFAFPAFIKSNNGGSSLALHRVSCPGELARALDELF--TRGGEAIIEPAVEGVEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I + F+ Y KY+ + + PA +P ++ +V+ A AH+A+G Sbjct: 183 VLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 RG SRSDF+ P + LE+N PGMT S+ P+ AA G SF L+ ++E Sbjct: 243 RGYSRSDFILTPA-GALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIEL 296 >gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017] gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017] Length = 352 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 43/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS++S KA AL+ A ++V + ++ VL Sbjct: 6 VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65 Query: 49 LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 KP D+ F +LHG GEDG +Q +L+L+++PY SG+L SA Sbjct: 66 GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------------ISPPYVIKPLKGGS 137 MDK+ K V ++ G+P V R + S I P +KP GS Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI ++ + L ++S++ + +E G V S Sbjct: 186 SVGISKVRSRLELEAALDSAASFDRRIVVEAGVVAREVECAVLGNGRPRASVVGEISFDS 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY YE KY+ ++ +PA +P DI +++Q +A A A+ G+SR DF + + +V Sbjct: 246 DFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVESTGEV 305 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S++P + + +G F +L+ +++ A Sbjct: 306 LINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQLA 344 >gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894] Length = 366 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I D + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++E + G E+ C V+G+ S + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAF--EFDHKVVVETGIKGREIECAVLGNDSPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVVSSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G ++EL+ ++E A Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIELA 350 >gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister microaerophilus UPII 345-E] Length = 311 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 11/307 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + VLMGG S E E+S +GKA +AL G+ V ++ V L L ++ F LH Sbjct: 8 ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LEL IPYT SG+ +SA++MDK+ + + G+ + S+ Sbjct: 68 GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127 Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+KP GS++GI ++K+ + + + ++L+E+Y+D Sbjct: 128 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRVFKVE--SRILVEEYLD 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T VM ++ V P S Y + KY+ + +++PA I ++ E+Q +A Sbjct: 186 GEEFTVPVMNGKAMPVI-QICPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + C G+ R D + + LE N PGMT S+ P+ AA G SF +L ++ Sbjct: 245 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 303 Query: 294 EDASCLR 300 E A + Sbjct: 304 EGAGLNK 310 >gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586] Length = 366 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG SSE EVSL S K A++ F V + +D+ + Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + P IK Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAELGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEFEHAVELAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N +PA + D+++ ++ +A A QA+ C+G++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIELA 350 >gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 23/310 (7%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG + G ACA L AG++V++++V + L ++ Sbjct: 5 VAVLMGG----------TSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIR 54 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 P + FN LHG GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV S Sbjct: 55 PSVVFNALHGTGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAES 114 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I+V+ + H++ PYV+KP+ GSS G+ +++ P L + + + ++ E+ Sbjct: 115 IVVSAADASASHVMQLPYVLKPVADGSSCGVHIVRSG-EAPPQLAANEAESAD--VMAER 171 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 YV G ELTC V+G +L + EI +Y + KY S H+ PA +P DI +++ R Sbjct: 172 YVPGRELTCAVLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRY 231 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +AH+AIGCRG++RSDF DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F L+ Sbjct: 232 SEIAHRAIGCRGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVS 291 Query: 291 WMVEDASCLR 300 W++EDAS R Sbjct: 292 WIIEDASLRR 301 >gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4] gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4] gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621] gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048] Length = 362 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 +L GG S+E +VSL + A AL F++ I + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66 Query: 45 ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG VQ +LELL IPY + Sbjct: 67 MSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191 GSS+GI + + ++ ++++E+ + G E+ GV + V Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348 >gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+P+ I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196] Length = 362 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 +L GG S+E +VSL + A AL F++ I + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66 Query: 45 ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG VQ +LELL IPY + Sbjct: 67 MSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191 GSS+GI + + ++ ++++E+ + G E+ GV + V Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348 >gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012] gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C ++G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAILGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A ++Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W] gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W] gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B] gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11] gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA271] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1] gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026] gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412] gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026] gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412] gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302] gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1] gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA143] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a] gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046] gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94] gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94] gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933] gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai] gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301] gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T] gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A] gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS] gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739] gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5] gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11] gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str. E2348/69] gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1] gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989] gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39] gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606] gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. TW14359] gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B] gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50] gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736] gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933] gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr. W3110] gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. MG1655] gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai] gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301] gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T] gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr. W3110] gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS] gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A] gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739] gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr. DH10B] gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5] gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4196] gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4113] gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4076] gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4401] gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4486] gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4501] gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508] gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A] gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22] gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019] gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171] gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1] gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4206] gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4045] gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4042] gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC4115] gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11] gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str. E2348/69] gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. TW14588] gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989] gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1] gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39] gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952] gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606] gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)] gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. TW14359] gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368] gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009] gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128] gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1] gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017] gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042] gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088] gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185] gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354] gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1] gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1] gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1] gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1] gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1] gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1] gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1] gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7] gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1] gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1] gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1] gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7] gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407] gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70] gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75] gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)] gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1] gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1] gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431] gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905] gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101] gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. 493-89] gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H 2687] gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA 5905] gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. LSU-61] gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14] gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010] gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G] gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180] gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357] gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520] gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482] gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120] gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489] gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007] gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3] gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167] gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044] gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H736] gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H591] gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli H299] gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88] gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71] gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70] gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671] gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71] gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218] gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272] gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227] gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304] Length = 364 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium 4_1_37FAA] Length = 352 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG SSE EVS S S ++ ++ I + + + Sbjct: 8 VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + ++ D+ F VLHG +GEDG +Q + EL +IPY G Sbjct: 68 NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135 +LASA+SMDK+ +K +V G+ + ++ + + ++ P +KP K Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193 GSS G+ K + + LL+++ H ++L+E+ + G E+ C V + Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 FY+YE KY++ +S ++P ++V+ A +A+ G+SR DF + Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + EIN PG T +S++P + G L+ ++E A Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIELA 348 >gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter proteolyticus DSM 5265] Length = 304 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VL GG S ERE+SL SG+ A+ L G +V +D + L LKPD F LH Sbjct: 3 IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114 G GEDG +Q +L +L IPY S + AS ++MDK +K V G+P I V Sbjct: 63 GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 D + + P+++KP GS++G+ +++ + L ++ D+LL+E+++DG Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180 Query: 175 IELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T G+ + V + Y+ KY + HV I ++ + + + Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G++R D++ + LEIN PGMT S+ P+ +AG F E L Sbjct: 241 KRICKIVGIGGVARLDYIV--KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298 Query: 292 MVEDA 296 +++DA Sbjct: 299 LIKDA 303 >gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3] Length = 354 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 152/349 (43%), Gaps = 56/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG+SSE VSL S + + + F V I + R L Sbjct: 6 VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65 Query: 47 ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ D+ F VLHG GEDG VQ +L L IP Sbjct: 66 SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129 + G+ ASA+ MDK +K + + +P V + + P Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI +++ + ++ H +L+ E+ V+G E+ C V+G+ V Sbjct: 186 VKPANAGSSVGISKAADRETLYKAIETAA--THDRKLVFEEAVNGREIECAVLGNEEPVV 243 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + P ++FY Y KY + + V+PA +P D+ + V++ A + +GCRG++R D Sbjct: 244 SCCGEIKPCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F V E N PG T +S++P++ G S+ ELL ++ A Sbjct: 304 FF-ALEDGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELLETLLRLA 351 >gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli] gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615] Length = 364 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVEAKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73] Length = 306 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 146/312 (46%), Positives = 212/312 (67%), Gaps = 23/312 (7%) Query: 1 MAVLMGGI-----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49 +AVLMGG+ S ACA LE G+ V+++DVD + +L L Sbjct: 6 IAVLMGGVSSERSVSLSSGS-----------ACADVLEAHGYYVTRVDVDSRIASILEKL 54 Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 +P +AFN LHG+FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV P Sbjct: 55 QPHIAFNALHGSFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAP 114 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 S ++NRF + +H + PPYVIKP+ GSS G++++ D+ P + SS W + D++++E Sbjct: 115 SYVMNRFAIGVKHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVE 174 Query: 170 QYVDGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 +Y+ G ELTC V+GD LDV EI FY Y+ KY + S H+ PA++ L+IY++VQ Sbjct: 175 KYIPGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQ 234 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R++ AHQAIGCRG+SRSDF F+ + ++ WLEIN QPGMT S+ P++A +G ++ ++ Sbjct: 235 RMSLAAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDI 294 Query: 289 LLWMVEDASCLR 300 + W+VEDASC+R Sbjct: 295 VKWIVEDASCMR 306 >gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23] gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 320 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +L SALSMDK+R+KQV + G+P Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + Q Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 258 FH-SVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1] gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1] Length = 304 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +L SALSMDK+R+KQV + G+P Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 125 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + Q Sbjct: 183 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 H ++GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 242 FH-SVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300 Query: 294 ED 295 E Sbjct: 301 EQ 302 >gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 371 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 155/347 (44%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE ++SL S K+ A++ +++ I +D++ L Sbjct: 14 VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F +LHG++GEDG +Q +L L+ P Sbjct: 74 LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKP 132 + +L SA+SMDK SK+++S G+ + N + + P +KP Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYEKVKENLGTPVFVKP 193 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + + + ++ + ++++IE+ + G E+ C V+G+ + Sbjct: 194 ANQGSSVGISKVYEKKKFYMAVDEAF--RYDNKIVIEEEIKGREIECAVLGNEDPIASLP 251 Query: 193 AVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 Y +N +PA++ D ++V++ A A +A+ C G++R DF Sbjct: 252 GEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNGVARVDFF 311 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F EIN PG T +S++P++ +G +++L+ M+ A Sbjct: 312 LTKEGN-LFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMIALA 357 >gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222] Length = 301 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 23/310 (7%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 +AVLMGG + G ACA L AG++V++++V + L ++ Sbjct: 5 VAVLMGG----------TSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIR 54 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 P + FN LHG GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV S Sbjct: 55 PSVVFNALHGTGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAES 114 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I+V+ + H++ PYV+KP+ GSS G+ +++ P L + + + ++ E+ Sbjct: 115 IVVSAADASASHVMQLPYVLKPVADGSSCGVHIVRSG-EAPPQLATNEAESAD--VMAER 171 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 YV G ELTC V+G +L + EI +Y + KY S H+ PA +P DI +++ R Sbjct: 172 YVPGRELTCAVLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRY 231 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +AH+AIGCRG++RSDF DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ Sbjct: 232 SEIAHRAIGCRGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVS 291 Query: 291 WMVEDASCLR 300 W+VEDAS R Sbjct: 292 WIVEDASLRR 301 >gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266] gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S+E E+S+ S K+ A+ ++ F+V + + Sbjct: 6 VALIFGGKSTEHEISIISAKSIAAVIDPFRFQVLPLYITHEGKWFTGEFAENILQLDLAE 65 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 DLAF LHG++GEDG +Q +L+ Sbjct: 66 MLRSTSLDATGNTLRQMAMHTGQQGFDFDFFKAGIDLAFIALHGSYGEDGRIQGLLDTFG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPP 127 IPYT G+LASA++MDK +K V+ G+ + + P Sbjct: 126 IPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGITILSSEYFADPKSTQKSIEEQFTWP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185 +KP GSS+GI + + L + + ++L+E+ + G E+ V Sbjct: 186 VFVKPASLGSSVGISKVHHIGELIAALETAC--RYDSKILVEKAMQGREVEVAVLGNNAP 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +T P S+FY Y KY + +PA+I ++ ++V++ A A++A+GCRG+SR Sbjct: 244 EVSITGEIEPGSEFYDYADKYIHNAAKMYIPARISPELQEQVRKDALRAYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D S + E+N PG T +S++P + A +G F EL+ +++ A Sbjct: 304 IDFFVDETSGTIVLNEVNTIPGFTDISMYPRLFAASGLPFNELVEKLLQFA 354 >gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043] Length = 394 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 144/362 (39%), Gaps = 65/362 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS ++ A++ + + I V R VL P Sbjct: 32 VAIIFGGRSSEHAVSCATAAGVMRAIDRDKYDIVPIGVSRDGQWVLVADDPARFELTAGR 91 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ +LHG FGEDG +Q LEL Sbjct: 92 TPEVLPDRAHVVLPLSTRDTALTVLEAGQPPRELGDVDVVLPLLHGPFGEDGTLQGFLEL 151 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 +I Y SG+ ASA MDK K V + G+PV P ++ + + Sbjct: 152 SDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVITDRAWRADRAAALDSCAALDF 211 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + ++ H ++++E + G E+ C V+ Sbjct: 212 PVFVKPARAGSSMGISKVDDPGLLEAAIERAR--EHDPKVIVEAGITGREIECAVLEGHG 269 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + + PA +P + EV+RL+ A +A+ Sbjct: 270 TQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSCPADVPAHVSDEVRRLSAAAFEAL 329 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 GC G++R D + +V EIN PG TP S++P M A +G + L+ ++ A Sbjct: 330 GCEGLARVDCFY-AEDGRVLINEINTMPGFTPHSMYPRMWAASGLPYTALIDELISLALV 388 Query: 299 LR 300 R Sbjct: 389 RR 390 >gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580] Length = 367 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------HLK---- 50 +A++ GG S E EVSL S A+ V I + ++ L H++ Sbjct: 3 IAIIYGGRSGEHEVSLVSASFVVRAIGSE-HTVYLIGITKNGEWYLQPSSLLGHIRKDTS 61 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F VLHG+FGEDG +Q + E+ ++ Sbjct: 62 AVLTIKCDKAARVAVIPGGGTAAGLSVNGTPIAADVVFPVLHGSFGEDGTIQGLFEMADL 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISP 126 PY G+LAS+ +MDK +SK + +P+ P + V +F ++ + Sbjct: 122 PYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCVRKFQWDNPKEREGFILHAEKELEY 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+G + + ++ W+ + IE + + Sbjct: 182 PLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLWDSKVLIEACIAAREIECSVTGNDEYV 241 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +P +FY Y+ KY + +PA I + +E++ +A A++A+ G++R Sbjct: 242 VYTPGEIIPSHEFYDYDAKYIDPDGAQLKIPADIDDEQRREIRSIAGKAYRALDLTGLAR 301 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D ++ ++ E+N PG T +S+FP+M +G +REL++ + + A Sbjct: 302 VDFFIDKKTKTIYLNEVNTIPGFTAISMFPKMCEASGMPYRELIMHLFDLA 352 >gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603] Length = 362 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 +L GG S+E +VSL + A AL F++ I + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66 Query: 45 ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F +LHG GEDG VQ +LELL IPY + Sbjct: 67 MSGEENTISPVSLSTEIIPTVTSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ R + + ++ P +KP Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191 GSS+GI + + ++ ++++E+ + G E+ GV + V Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 VPK DFY Y+ KY ++ ++PA++ + ++R A +A Q++ G++R+DF Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGVPYPELIEELIRLA 348 >gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863] gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v] Length = 364 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEEYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I ++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. 8004] Length = 368 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + + ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350 >gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris str. 8004] Length = 373 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 11 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 71 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T P +K Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + + ++L+E + G E+ C V+G+A+ + Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 248 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 249 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 309 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 355 >gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355] Length = 365 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S K A++ F+V + +D+ L Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ + V + + N P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAALELAF--RFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ AG S+++L+ ++E A Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350 >gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ] Length = 306 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 150/300 (50%), Gaps = 4/300 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 ++ GG SSEREVSLS AL+ G +V D+ +A + D AF LHG Sbjct: 5 LVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLNLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120 GEDGL QA+L+ +PY +G S L+++K SKQ+ S G+P L Sbjct: 65 PGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPPPAGY 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP+ +KP GGSS+ + +++ +P L + + L+ E G+ELTC Sbjct: 125 APAFPPPWFVKPNSGGSSVYMSLVRDPAELPAALEKIFA-TGDAALIEEGLCGGMELTCA 183 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I +F+ Y KY + + PA IP + E+ RL+ AH A+G Sbjct: 184 VLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAHAALGL 243 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G SR+DF+ + LE+N PGMTP S+ P A AG F +L+ ++E R Sbjct: 244 TGYSRADFIHTDKHG-LMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLMELGLARR 302 >gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103] gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103] Length = 365 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S K A++ F+V + +D+ L Sbjct: 6 VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG GEDG +Q +L + + Sbjct: 66 LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ + V + + N P IK Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + +++LIE+ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTTAAAFRAALELAF--RFDNKVLIEKGIKGREIECAVLGNDYPEASP 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA IP + + ++ +A A A+ C G++R D Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ AG S+++L+ ++E A Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350 >gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 311 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 170/305 (55%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL+G SSE+E++ + + +AL+ G+ +I +D +V + ++A HG Sbjct: 3 IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111 +GEDG +Q +LELL IPY SG+LASAL++DK +K++ + +P I Sbjct: 63 KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P++IKP GS++G+ + ++ + + + + + ++IE+Y Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGIELAF--KYDENIIIEEY 180 Query: 172 VDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E+T G+ + +PK+ FY YE KY+ S H++PA++P ++Y++ Q Sbjct: 181 IKGKEITAGIYDINNPVCLPLIEIIPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQG 240 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 L LAHQA+GCR +SR D + + + ++ LE+N PGMT S++PE A G F EL+ Sbjct: 241 LGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELI 300 Query: 290 LWMVE 294 ++ Sbjct: 301 DSFIK 305 >gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197] gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197] gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617] Length = 364 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAADLAFEFDHKVIVEQGLKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium] gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245] gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 342 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055] Length = 342 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSXDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9] Length = 372 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG S E EVSL S + A++ ++V I + + + Sbjct: 8 VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67 Query: 46 -------------LAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + D+ F VLHG FGEDG +Q +LEL ++ Y SG+L S Sbjct: 68 TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 A MDK K++ ++ G+P P + V R + + P +KP GSS Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA 193 +GI + + + ++ ++ + G E+ V Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDRKLVVEQGVGGPGAKPRELEVAVLGNETLEASVVGEI 247 Query: 194 VPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +FY YE KY ++PAK+ K+++ +A A +A C G++R DFL Sbjct: 248 VPAKEFYDYEAKYQMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVDFLM 307 Query: 251 DP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +P K + EIN PG T +S++P++ +G + EL+ ++ A Sbjct: 308 EPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELIDRLIVLA 357 >gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6] Length = 364 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+K GSS+G+ +++++ + + ++ + L++EQ++ Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAVTEAL--KYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVAVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTATSLVPKAANEMGIDFPTLCEKI 301 Query: 293 VEDASCLR 300 + AS + Sbjct: 302 LLTASIGK 309 >gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae PB189-T1-4] Length = 326 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 165/307 (53%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDR-SVGLVLAHLKPDLAFNVL 58 +AVL GG S ER++S+ SG C AL++AGF+ V DV S LA + D+ F + Sbjct: 11 VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117 HG FGEDG +Q +LE L IPYT SG+LASALSM K +K V S +P I V Sbjct: 71 HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 H ++ PYV+KP GSS G+ ++ ++ + + N G +L+E+ Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAIASARGKNSG--VLVEER 188 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E+T V+G + + K + Y+ K HV+PA + Y Q Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKYEAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQE 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH+A+GC G+SRSDF+ D + + + LE N PGMT S+ P+ A + G SF EL Sbjct: 249 LAVRAHRALGCTGVSRSDFIVDA-TGEPYILETNNIPGMTEHSLIPDAARHDGMSFSELC 307 Query: 290 LWMVEDA 296 +++E A Sbjct: 308 TYLIECA 314 >gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. campestris str. B100] gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris] Length = 368 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P R T P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + L + + ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + + V+PA I +Q+ A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350 >gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399] Length = 779 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 165/310 (53%), Gaps = 13/310 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59 + V+MGG S+E EVS SG A AL + + I+++ + + L+P L FN LH Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q L++L IPYT SG+ A+AL+MDK +K++ ++ G+ T Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592 Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + S P V+K + GSS+G+ ++ ++ + L ++ ++G ++L+E+++ Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDEAF--SYGGEVLVEEFIA 650 Query: 174 GIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V G+ S Y YE KY+ S H++PA I + EVQ L Sbjct: 651 GRELTVVVWGETGHAEALPVIEITTTSGRYDYESKYTPGASAHLVPAPISPECTAEVQEL 710 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A A GC G++R D + + K + +E+N PGMT S+ P+ A G SF +L Sbjct: 711 AVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLCE 769 Query: 291 WMVEDASCLR 300 ++E A R Sbjct: 770 KILEMAGYQR 779 >gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25] gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25] Length = 364 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 144/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D++ L Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLLNQENPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKASQQLVETSGTGLLEHVDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I + + + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGLPMFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + +++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVGTEAEYHAAVELAL--GFDEKVLVESAVKGREIECAVLGNEHPIASG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I D + ++ LA A + +GC G++R D Sbjct: 244 CGEIVVSSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLGCSGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ AG S+ EL+ ++E A Sbjct: 304 FLT-DDGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350 >gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c] gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c] Length = 320 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 21 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +L SALSMDK+R+KQV + G+P Sbjct: 81 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 141 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + + Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIARLALAA 257 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 258 FR-AVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316 Query: 294 ED 295 E Sbjct: 317 EQ 318 >gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 304 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL SG+ L G +D ++ L + D FNVLHG Sbjct: 5 VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64 Query: 61 NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113 + G ++ +PYT S +L SALSMDK+R+KQV + G+P Sbjct: 65 HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + ++ P +IKP K GSS+G+ + + + + ++ + +LL+EQ ++ Sbjct: 125 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 182 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + +L VP+ +Y Y KY + ++ +V P + + + Sbjct: 183 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIARLALAA 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+GCRG R D + + S + F LE+N PGMT S+ P+ A+ G F +L+ ++ Sbjct: 242 FR-AVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300 Query: 294 ED 295 E Sbjct: 301 EQ 302 >gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9] gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9] Length = 364 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136] Length = 307 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 158/305 (51%), Gaps = 13/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF--NVL 58 +AVL GG SER VSL S ++ AL+ G +V +IDV + V D+ N++ Sbjct: 8 IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTV----PGDVVVAVNMI 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +QA+LE + YT +G+ S ++ DK SK+ + GVP S ++ + Sbjct: 64 HGTFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVPTPQSQVLKLDGV 123 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D ++ P V+KP + GSS+G+ ++ ++ + L + +G L+E++VDG ELT Sbjct: 124 DQL-RLTLPVVVKPPREGSSVGVHIVHTEEELATALADAK--QYGQDTLVEEFVDGKELT 180 Query: 179 CGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 GV+G +L V I Y + + + PA + ++ + VQ A A Sbjct: 181 VGVIGGEALPVIHIEPVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAM 240 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+G R D + + F LEIN PGMT S+ P+ A AG F +L+ ++E Sbjct: 241 KAVGVEVYGRVDVML-RKDGQPFVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIEL 299 Query: 296 ASCLR 300 + +R Sbjct: 300 SLEVR 304 >gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168] Length = 364 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F+V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + D + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVG--VSKVTNEAQYAQAVALAFEFDHKVVVEQGIVGREIECAVLGNDRPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA I I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIELA 350 >gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA280] Length = 364 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272] Length = 356 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 47/338 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK----------- 50 AV+ GG SSE VS + + +AL+ + V I + V + Sbjct: 15 AVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLPA 74 Query: 51 ---------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 D F +LHG +GEDG VQ +LE+ +I Y +G+LASA+SMDK Sbjct: 75 VRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKPF 134 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKD 147 +K V S+ G+P P + + + + + + P +KP + GSS G+ +++ Sbjct: 135 TKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVESW 194 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA--------VPKSD 198 + ++ + ++++E + G EL CGV+ D Sbjct: 195 DDLDAAVVAAR--AFDPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDHD 252 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY +E KY S +++PA IP+ + + ++ A A +A+GC G++R DF + Sbjct: 253 FYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLT--DDGLV 310 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG TP S+FP + +G + +L+ +V A Sbjct: 311 VNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348 >gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083] Length = 385 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITKDGRWALTADEPERMAITERR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESSEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWEQNESAARKKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + ++ +H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSGLDEAIAEAQ--SHDPKILVEAALRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P+ Y ++ ++PA + + EVQ+LA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKYIDSTPGIVPAPLTPEETAEVQKLAVDA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P+M +G ++ EL+ ++E Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPQMWEKSGIAYPELVDRLIE 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis] Length = 342 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ + F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + EL IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612] Length = 510 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 44/341 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-----AHLK------ 50 ++ GG S E EVS +S ++ + ++ I + ++ + ++K Sbjct: 169 GIVFGGQSGEHEVSRASACNVIEVIDKEKYDITLIGITKNGDWKVYTGDYKNIKDGSWEQ 228 Query: 51 -------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D+ F VLHG GEDG +Q + EL+ PY G+LASA M Sbjct: 229 DTDKIHADFSIFHDPIIQDVDVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAGM 288 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIV 143 DK+ SK + S G+PV P + R + P IKP GSS+GI Sbjct: 289 DKVASKMLFESAGIPVGPYVYFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGISK 348 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + ++ + ++++E +++ E+ C V+ + I + Sbjct: 349 AHNREEFIDGVNEAL--RYDHKIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEFY 406 Query: 204 LKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + +PA+I + ++++ A A + I +SR DF + ++ Sbjct: 407 DYEAKYSDNQDSKIVIPAQISDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIYI 466 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 EIN PG T +S++P+M G S+ EL+ +++ A+ R Sbjct: 467 NEINTMPGFTNISMYPKMWENMGVSYAELVEKLIQGAAVKR 507 >gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2] gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 303 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGGISSERE+SL +G+ + L+ ++V I+++ L+ D A LHG Sbjct: 4 IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117 +GEDG VQ LE L IPY+ G+L+S++SMDK +K+++ G+ I + Sbjct: 64 KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P V+KP GGSS+ ++K + + ++ W D ++IEQ+V G E+ Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKW--DDSVMIEQFVGGEEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC V+ S+F+ ++ KY +T + ++P D+ V+ A ++A Sbjct: 182 TCAVLSGKL-LPIVSIKANSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C SR D + + LE N PG+T S+ P+ A AG F ELL ++++ + Sbjct: 240 LKCSVYSRIDMII--KDGVPYVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIIDYSL 297 Query: 298 CLR 300 R Sbjct: 298 EER 300 >gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937] Length = 366 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG SSE EVSL S K A++ F V + +D+ + Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + P +K Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVRNQAEFERAVDLAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N +PA + ++++ ++ +A A Q + C+G++R D Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++V E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIELA 350 >gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622] Length = 326 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 155/301 (51%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG ERE+SL +G+A +ALE G +V++I + L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K+ + V R Sbjct: 65 RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KP GGSS+G+ ++++ +++ + + G + L+E+YV G E Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEAL--AFAVAQASRFGGEALVERYVAGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L E+A P+ + ++ KY + P P + Sbjct: 183 VTVGILGGQVLGSCEVATPRE-GFDFDAKYKGGAAYFCPPRLSPTRVANVEALALAAYRA 241 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCRG +R D + V LE+N PG TP S+ P++AA AG F L ++ A Sbjct: 242 L-GCRGQARVDLMCSDTENDV-VLEVNTLPGFTPTSLLPKIAARAGLDFAALTERILALA 299 Query: 297 S 297 + Sbjct: 300 T 300 >gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638] gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638] Length = 364 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFNTLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509] Length = 364 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEEYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4] gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17] gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 364 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 148/344 (43%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 +L GG S+E +VSL + A AL F++ I + Sbjct: 10 GLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQALQ 69 Query: 45 ----------------VL-----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++ D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 70 MNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129 Query: 84 ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 +LASA MDK+ K + + + + ++ P +KP Sbjct: 130 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPAN 189 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI K + + ++ ++++E+ + G E+ GV + V Sbjct: 190 LGSSVGINKCKDREELEKAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVIGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 VPK +FY Y+ KY ++ ++PA++ + K +QR A A Q++ G++R+DF Sbjct: 248 IVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ E+N PG TP S+FP + + + +L+ ++ A Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTDLPYPKLIEELIRLA 350 >gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM 40736] Length = 385 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRTKYDVLPIGITKDGRWALTADAPERMAIIDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 QPSVDVLAESDEGGVILPVDPSNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY SG+LASA+ DK K+V +S G+ V P ++V Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYLVVRPREWRQDEQAARKRIV 198 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 199 DFAGDHGWPLFVKPARAGSSIGITKVDDLAGLDEAIAEAQ--RHDPKILVEAALRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P + Y ++ ++PA + + EVQRLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTPEETAEVQRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V+ Sbjct: 317 FEAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703] Length = 366 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG SSE EVSL S K A++ F V + +D+ L Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + I Sbjct: 66 LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + + R + H + P IK Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++ ++L+E + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAF--SYDHKVLVESAIVGREIECAVLGNDHPEASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ +PA +P ++ ++ +A A QA+ C+G++R D Sbjct: 244 CGEIVVHDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V E+N PG T +S++P++ G + L+ ++E A Sbjct: 304 FLTPQED-VIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIELA 350 >gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 375 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K +++ F+V +D+ + + Sbjct: 6 VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ + V PSI N + +K Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + S L + D++L+E ++G EL C V+G+ + Sbjct: 186 PANQGSSVGVSKVINRISFDQALALAFC--FDDKVLVESAINGRELECAVLGNHDPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + LN V+PA I ++ +Q++A A QA+ C G++R D Sbjct: 244 CGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV E+N PG T +S++P++ +G S+ L+ ++E A Sbjct: 304 FLTT-NNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350 >gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30] gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30] Length = 356 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIELA 341 >gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032] Length = 366 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ V P I + R + + P +K Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAF--EFDHKVVVETGIKGREIECAVLGNEEPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I D+ ++++ +A A QA+ C G++R D Sbjct: 244 CGEIVVSSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G +++L+ ++E A Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIELA 350 >gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 382 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 90/359 (25%), Positives = 140/359 (38%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A+ ++V I + +S VL Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYEVIPIGIAKSGQWVLVSADTAQWSLAATS 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVAPSAKSVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISP 126 + Y +G+LASA+ MDK K V V + Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYVAVTDRQWRKDPESVRKQVDRLGF 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI ++ + + ++ H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKVESMAELDAAIEEAR--RHDLKLVIEAGITGREIECAVLEGRG 256 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 D ++P + + PA IP + V+ LA A A Sbjct: 257 TDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALSCPADIPEEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P ++ EIN PG TP S++P+M A +G + +L+ ++ A Sbjct: 317 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLDYADLIDELIYLA 374 >gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b] Length = 364 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ + F V + +D+ L Sbjct: 6 VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ + V + + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + ++LIEQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDLAF--TFDRKVLIEQGIKGREIECAVLGNDEPVASP 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N V+PA I + ++ +A A QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ AG S+ L+ ++E A Sbjct: 304 FLTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIELA 350 >gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7] Length = 346 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 161/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 +AVL GG S ER+VS++SG AL AG +V +D Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHEVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 38 VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D ++ K D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P + E QRLA H+A+ G SR+DF D +++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803] gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC 6803] Length = 354 Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 46/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E EVS+ S +A A AL ++VS + ++ + Sbjct: 3 VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62 Query: 46 ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + ++ F +LHG GEDG VQ + L+++PY SG+L S Sbjct: 63 GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135 + MDK+ K V G+P + V R + S + P +KP Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + L ++S++ + + +E + V Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECAVLGNENPQASVVGEIT 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SDFY YE KY+ S +PA +P + ++Q +A A +A+ G+ R DF + P + Sbjct: 243 YDSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQPTT 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++PE+ +G F L+ +++ A Sbjct: 303 GQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLA 344 >gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827] gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 355 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 50/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP---- 51 +AV+ GG SSE VS S + + L+ F+V + + R V LA L+ Sbjct: 8 VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG +GEDG VQ +LEL ++PY G+ Sbjct: 68 MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140 LASA +MDK +K ++ + G+ V ++ R + + P +KP + GSS+G Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---- 196 I + + + + +++IE V G E+ CGV+ V + Sbjct: 188 ITKVTDWADLDAAIAFARQT--DPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245 Query: 197 ---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 D+Y ++ KY +PAK+ D + ++ LA A +A+ C+G++R DF Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDFFVTE- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + EIN PG TP+S++P M G S+R+LL +VE A Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETAIAR 350 >gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 310 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +A+L GG S EREVSL S A ALE ++V +ID L + F LH Sbjct: 8 IALLCGGASGEREVSLLSAAAVEEALEK-RYEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GE+G +Q E + +PYT G+L+SA++MDK +K +V S +P I Sbjct: 67 GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 D + + V+KP GS+LG+ ++ + + + +L+EQ++ G Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIVDNGDDLACAIDTALELAPS--VLVEQFISGR 184 Query: 176 ELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 ELT V + +P ++FY YE KY + H+ PA + ++ + +A Sbjct: 185 ELTVAVLGGEKPRVLPPIEIIPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMALG 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AH A+GC G+SR+D + D ++++LE N PGMT S+ P+ A G +F EL ++ Sbjct: 245 AHDALGCYGVSRTDCILDER-NRLWYLETNTIPGMTGTSLLPDAAKAVGITFDELCWNIM 303 Query: 294 EDA 296 EDA Sbjct: 304 EDA 306 >gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 308 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ + + R + Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 LI P V+KP GGSS+G+ ++ ++ + + W ++++IEQY+ G E+ Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKW--DNEIIIEQYMIGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ D + F+ Y+ K ST P ++PL I+ V + A ++++ Sbjct: 188 TCPILNDKL-LPVLSIKHTAVFFDYQAK-YDDASTIEEPVELPLAIHDRVAKAAMTSYKS 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL +++ + Sbjct: 246 LKCSVYARVDMLI--KEGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIDSS 302 >gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B] gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B] Length = 341 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 161/338 (47%), Gaps = 44/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG SSE ++SL+S + ++ + V I + + Sbjct: 5 IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIEDGSWI 64 Query: 45 ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 VL + + D+ F +LHG GEDG +Q + +LL +P + +L+SAL MD Sbjct: 65 NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCMD 124 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIV 143 K SK ++ + V P ++ + + +KP GGSS+G+ Sbjct: 125 KAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVSK 184 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSD 198 +K + S + + ++ + ++L+E+ + E+ ++ D + + Sbjct: 185 LKAEDSFEVAIEKAF--KYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNKE 242 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY YE+KY+ + ++PAK+ ++ +++ LA A++ + CRG++R DF D + +++ Sbjct: 243 FYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEIY 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S FP++ AG + EL+ ++++A Sbjct: 303 LNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340 >gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132] gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132] Length = 303 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 166/298 (55%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++ GG S ER+VSLS + SAL++ G V+ D +L+ K D AF LH Sbjct: 3 VILIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTM 118 G GEDGL+QA+L+ PY +G AS L+++K SK+V + G+ + Sbjct: 63 GTPGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGR 122 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ +S P +KP KGGSSLG+ ++K+ + P L + + L+E ++ G+ELT Sbjct: 123 ETPLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAALDKVFAMC--QSALVETFIPGVELT 180 Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 CG++G+ +L + I SDF+ YE KY++ + + PA + + + +Q +AH A Sbjct: 181 CGILGNEALPLIMITPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G SR DF+ P + + LE+N PGMTP S+ P AA+ GYSF EL+ ++ Sbjct: 241 LGLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELIRL 297 >gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium CY_gF1DD01_14] gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15] Length = 364 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYTIAVDLAFEFDHKVIVEQGIKGREIECAVLGNNNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798] Length = 362 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 49/340 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG S+E +VS++S + AL+D+ + + R + Sbjct: 8 LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67 Query: 52 ------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 D+ F +LHG +GEDG VQ LEL+ +PY SG+L S Sbjct: 68 DSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVLGS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138 +LSMDK+ K++ S G+P+ + + R + + P +KP GSS Sbjct: 128 SLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196 +GI K S+ L +S + +L++EQ V+ EL C V V +P Sbjct: 188 IGITKAKDRSSLLQALELAS--KYDRRLIVEQGVEARELECAVLGNDYPRASVVGEILPG 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +FY++E KY S +S ++PA IP + E++ A A +A+ G++R DF K Sbjct: 246 DEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLTSE-NK 304 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG TP+S++P++ +G S+ +L+ +++ A Sbjct: 305 VLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344 >gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM 10507] Length = 344 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 153/339 (45%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER+VS+ SG AL G + +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62 Query: 39 ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 +S + L+ D+ F LHG GE+G VQA +L++I Sbjct: 63 AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKG 135 YT +G SA++MDK +K + VP + + + H + P V+K G Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ ++ L ++ S+ +++IE+Y+ G E T V+ + + P Sbjct: 183 GSSIGVYIVQDQEAYVKALDEAFSYEE--EVVIEEYIQGKEYTVAVVDGEAY-PIVLIEP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S FY Y+ KY + + PA + + +++Q A ++A+ + R DF+ D Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDEAGN 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G + L ++E Sbjct: 300 -MYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337 >gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] Length = 346 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 162/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 +AVL GG S ER+VS++SG AL AG +V +D Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 38 VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D ++ K D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D +++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 373 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 62/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S + + +A++ A + V I + VL P Sbjct: 10 VAVVFGGKSSEHAISCVTAGSVLAAIDRAAYDVVPIGIATDGRWVLESGDPERLRIEGPD 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG +GEDG +Q +LE Sbjct: 70 RLPHVDGERAAIALAPDTASTSLVVTEPAQPPRALGEVDVVFPLLHGPWGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDSQHLIS 125 + + Y +G+LASA+SMDK K V+ S V I Sbjct: 130 MAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSVTVTTREWARDAAGCRARADEIG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-----DQLLIEQYVDGIELTCG 180 P +KP +GGSSLGI + + + + + + + G+ Sbjct: 190 YPLFVKPARGGSSLGISKVHDATELDGAIELAFEHDPKVLVETAAIDAREVECGVLQAVD 249 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 + S+ +FY + KY T +PA +P + ++V+ L+ A +A+G Sbjct: 250 GTPETSVPAEIRISGAHEFYDFAAKYLPEEHTELDVPADLPEALVRQVRELSVRAFEAVG 309 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF P ++ EIN PG TP S+FP M A +G + L+ +++ A Sbjct: 310 CEGLARVDFFVLP-GERLVVNEINTMPGFTPTSMFPRMWAASGLDYPALVDRLIQLA 365 >gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073] gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89] gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536] gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1] gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88] gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073] gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89] gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536] gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1] gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11] gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88] gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82] gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA] gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972] gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034] gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1] gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1] gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1] gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101] gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972] gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146] gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG 857C] gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3] gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1] gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3] gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327] gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1] gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252] gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263] gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2] gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1] gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86] gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli M605] gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA) (D-Ala-D-Ala ligase A) [Escherichia coli TA206] Length = 364 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYTIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 386 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 61/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG +SE VSL + A++ + ++V I + + VLA + Sbjct: 28 VAVVFGGRNSEHSVSLLGAGSVLEAIDQSKYEVIPIGIAQDGRWVLASERQRYAIESGRL 87 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F +LHG FGEDG +Q +LE+ + Sbjct: 88 PTVDETGDALAIPTHSASLVALRPGEIPRALGEVDVVFPLLHGPFGEDGTIQGLLEMAGV 147 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYV 129 Y SG+LASA+ MDK K V+ + G+PV P ++V + P Sbjct: 148 RYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVF 207 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVM 182 +KP + GSS GI + + + + H ++L+E + G E+ C Sbjct: 208 VKPARAGSSQGITKVHDAAGLEEAIEAAR--EHDPKVLVEAAIPGREVECAVLESLGDSP 265 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +AS+ + +FY +E KY PA +P + + V+ LA A +A+GC G Sbjct: 266 PEASVVGEVVVAEGHEFYDFEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEG 325 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF + P S ++ EIN PG T S+ P++ A G + +L+ +++ A Sbjct: 326 LARVDFFYTP-SGELIVNEINTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQLA 378 >gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2] gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1] gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14] gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192] gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58] gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016] Length = 346 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 +AVL GG S ER+VS++SG AL AG +V +D Sbjct: 8 VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 38 VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D ++ K D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D +++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293] Length = 363 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 47/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E EVSL S + ++ F V+ I VD+ L Sbjct: 6 VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L +L F VLHG FGEDG VQ +LEL ++PY +G+L Sbjct: 66 VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLK 134 S+L MDK K++ G+PV P + + S P +KP + Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ + ++ + + + S++ + IE + + + V Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSFDDKLLIEPAVQAKEIECSVIGNQELTTFAPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P DFY Y+ KY + ++ +P+ + + K V++++ A++ G +R D ++ Sbjct: 246 PSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFYEEA 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV EIN PG T +S+FP++ G ++ ELL +++ A Sbjct: 306 TGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLDLA 348 >gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 341 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 99/339 (29%), Positives = 156/339 (46%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER+VS+ SG AL G +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62 Query: 39 ---DRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 RS + +K D F LHG GEDG +QA +LL I Sbjct: 63 AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKG 135 YT SG L SAL+MDK +KQ+ GVP ++V + + + P V+K G Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRKTDSPKSAAELGMELPCVVKTACG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ ++ + ++ D+L++EQY+ G E T GV+ + P Sbjct: 183 GSSVGVYIVHTEEEFSEAVKNGF--SYEDKLIVEQYIRGQEYTVGVIDGKAY-PIVEISP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + FY Y+ KY + ++ PA + ++ +++Q +A A+ + +R DF+ D Sbjct: 240 IAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE-DG 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LE N PGMTP S+ P+ AA G +F +L ++E Sbjct: 299 GIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337 >gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227] Length = 370 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + + ++++E+ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 310 FLTLEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 356 >gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469] Length = 364 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + R + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + + ++++E+ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA IP +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTLEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350 >gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 310 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 12/308 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 + VLMGG S E EVS +G A A AL G+K ++++ R+V + L ++ FN +H Sbjct: 6 IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116 G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K SK V +P S N Sbjct: 66 GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+K GSS+G+ +++++ + + ++ + L++EQ++ Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAVTEAL--KYDPILVVEQFL 183 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG E T V+ +L V P S Y Y+ KY+ + +++PA I ++ E+QR+ Sbjct: 184 DGREFTVAVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 L ++ + G+ R D + D K++ LE N PGMT S+ P+ A G F L + Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTVTSLVPKAANEMGIDFPTLCEKI 301 Query: 293 VEDASCLR 300 + AS + Sbjct: 302 LLTASIGK 309 >gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 356 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A++ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L + F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271] gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271] Length = 360 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 163/351 (46%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S+E E+S+ S +A A+ ++ +++ I V Sbjct: 6 VALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMPA 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+A ++HG+ GEDG +Q +L++ Sbjct: 66 MLANTSADTIRERLREISFSDPRNRFLFDFSEEGIDVALPIIHGSTGEDGKIQGLLDMFS 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPP 127 +PYT G+ ASA++MDK +K G+ + P + + + P Sbjct: 126 VPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSVILEEFTLP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 + +KP GSS+GI + + + + L ++ ++LIE+ ++G E+ V+G+ S Sbjct: 186 FFVKPASQGSSIGITKVHRPEELAAALEKAFMV--DTKVLIEKTIEGREIEVAVLGNDSP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + P DFY + KY + ++ +PA++P ++ ++V A A++A+ CRG+SR Sbjct: 244 VASVPGEVEPGGDFYDFTDKYINGKASLHIPARLPEEVLQKVSTEALKAYRALECRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + K+ EIN PG T +S++P M +G F +L+ +++ A Sbjct: 304 VDFFIEHATGKIILNEINTVPGFTGISMYPMMMDASGIDFSQLIDRLLQLA 354 >gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680] gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 385 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITRDGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESNEGGVILPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWERDESAARRKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + ++ H ++++E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAVAEAQ--RHDPKIIVEALLRGREIE 256 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + ++Y ++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKYIDSTPGIVPAPLTPEETAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P+M +G ++ EL+ +VE Sbjct: 317 FEATSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQASGIAYPELVDRLVE 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 351 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 151/346 (43%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAH-------- 48 + ++ GG+S E EVS+ S + AL+ F V I +D+ + Sbjct: 8 VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K + F VLHG GEDG +Q +L PY SG Sbjct: 68 DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKP 132 +L SAL MDK+ K S+ G+P ++ + + P IKP Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE- 191 GSS+GI + + L ++ ++++E+ + EL C V+G + + Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCV 245 Query: 192 -IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 SD+Y Y+ KYS ++ ++PA IP I KEVQ L+ LA +AI GI+R DF + Sbjct: 246 GEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ EIN PG T S++P + +G +L+ ++E A Sbjct: 306 DEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351 >gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas albilineans] Length = 319 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 159/297 (53%), Gaps = 7/297 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSER+VSL+SG AL G +D ++ + D FN+LHG Sbjct: 20 VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVDGIAALLERIRAGAVDRVFNILHG 79 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 GE+G++Q +L L++P+T + +L SAL++DK+R+KQV + G+P I + Sbjct: 80 GDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADADLA 139 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +KP GSS+G+ + + +++ + ++ +LL+EQ V G E T Sbjct: 140 AAAAELGYPLFVKPSCEGSSVGVFRVLSAVDL--APVRAFAADYAGELLMEQMVQGEEYT 197 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 G++GD +L VP D+Y Y KY + ++ ++ P D ++++LA A A Sbjct: 198 VGILGDIALPSI-RIVPVGDWYDYHAKYIAEDTQYLCPGLSGEDE-VQIRQLALQAFAAA 255 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 GC G R D + D + + +EIN PGMT S+ P+ AA+ G L ++E Sbjct: 256 GCSGWGRVDVMRDRVRG-LQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILEQ 311 >gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47] Length = 313 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 150/302 (49%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV +++ T Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129 Query: 121 QHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + VIKP K GSSLG+ +K + + S G +L E+YV G ELT Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189 Query: 179 C---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + Y +E KY S + +V PA++P ++ ++++ + A Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGDYDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKAA 249 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G SR D + LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 250 LAVGADAWSRIDVIL-RDDGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAAR 308 Query: 296 AS 297 AS Sbjct: 309 AS 310 >gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 308 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 158/299 (52%), Gaps = 9/299 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG SSE++VS+ +GK + L + V +I ++ ++ D+A LHG Sbjct: 10 VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 FGEDG +Q +LE L IPYT SG+LAS+L MDK +K+++ G+ + + + Sbjct: 70 KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLVKGEELP 129 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 L+ P V+KP GGSS+G+ ++ ++ + + W ++++IEQY+ G E+ Sbjct: 130 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKW--DNEIIIEQYMIGDEI 187 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC ++ D + F+ Y+ K ST P ++PL I+ V + A ++ + Sbjct: 188 TCPILNDRL-LPVLSIKHTAVFFDYQAK-YDDASTIEEPVELPLAIHDRVAKAAMTSYTS 245 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C +R D L + LE+N PGMT S+ P+ A AG S+ LL +++ + Sbjct: 246 LKCSVYARVDMLI--KEGVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALLDSIIDSS 302 >gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1] Length = 304 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 152/295 (51%), Gaps = 6/295 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSER VSLS AL G +V D+ + K D F LHG Sbjct: 5 LVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDGL QA+L+ +PY SG S L+++K SKQ+ +P V R S Sbjct: 65 PGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGTSA 124 Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 P+ +KP GGSS+ + ++++ + +P L + HGD LIE+ + G ELTC Sbjct: 125 RPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAALEKVF--AHGDDALIEEGLSGPELTCA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I +F+ Y KY + + PA + + +E+ RL+ AH+ +G Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVLGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G SR+DF+ P + LE+N PGMTP S+ P AA AG SF +L+ ++E Sbjct: 243 CGYSRADFILAPEG--LRLLEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIEL 295 >gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895] gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895] Length = 371 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 81/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ A F V + +D+ +L P Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R D + P +K Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++++A A+Q +GC G++R D Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 356 >gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1] Length = 310 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S EREVSL SG+A AL+ G++V IDVDR + VL ++A LHG Sbjct: 8 IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG +Q +LE + IPYT + ASA+ MDK SK++ S G+P I + Sbjct: 68 PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127 Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +KPL GSS+GI + + ++ S +H + ++E+ ++ Sbjct: 128 DELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSH--RCMVERAIE 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G ELT ++ + + VP FY Y+ KY++ + +++PA D E L Sbjct: 186 GRELTLSILDGEAFPLI-EIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGL 244 Query: 234 AHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A I GCRG+ R+DF+ D + LE+N PGMT +S+ P+ A G +L + Sbjct: 245 AAYHITGCRGLVRADFILDGE-GTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303 Query: 293 VEDA 296 ++ A Sbjct: 304 LQGA 307 >gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3] Length = 303 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 5/300 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSEREVSL+ + A AL G V+ D+ +L + D A LHG Sbjct: 5 LIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P D Sbjct: 65 PGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPPPADW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P +K GGSSL + + + + L + GD+ LIE + G E+TCG Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARDRAELDMVLAEIF--AAGDEALIEPELKGREVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ +L I DF+ YE KY++ + + PA I ++ V+ LA AH+A+G Sbjct: 183 ILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAAHRALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 RG SR+DF+ D + + LE+N PGMT S+ P+ A G F LL ++E R Sbjct: 243 RGYSRADFILDA-DQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLMELGMARR 301 >gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase Length = 343 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ V Y Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q ++ +GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG S EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLA 340 >gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 362 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGITEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 351 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 161/340 (47%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S E EVSL+S ++ L AG +V + + R + Sbjct: 4 VMVVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGG 63 Query: 46 ----------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 LA +P D+ F VLHG +GEDG +Q +LEL +IPY +G+LASA Sbjct: 64 NAGSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASA 123 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSL 139 + MDK+ K+V + G+P + + R + P +KP GSS+ Sbjct: 124 VGMDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSV 183 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPK 196 GI + + L +++ + ++++E VD E+ V+G+ + +V+ + K Sbjct: 184 GISRAAEPGELAAALDAAAALD--RRIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRK 241 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY YE KYS PA +P + E++R+A A +AI G++R DF + + + Sbjct: 242 GDFYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGR 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T S++ + +G + LL ++E A Sbjct: 302 VLLNEINTIPGFTATSVYSRLWEASGLPYERLLERLIELA 341 >gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC 12228] gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228] gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU144] gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU045] Length = 357 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGITEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola] Length = 310 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER++S+SSG A +L +G K D + L K D A+ LHG Sbjct: 5 VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K + S G+PV P + + + + Sbjct: 65 KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124 Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GSS+GI ++ + + ++N+ + +L+EQ+ Sbjct: 125 NLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAI--EVAFNYSNTILVEQF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ + L +I + Y + KY ++ ++ P+ + L K+++++A Sbjct: 183 IKGTEYTVSILDEKILPSIQIITKNNF-YDFASKYQLSSTQYLCPSGLNLKQEKKLKKIA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A +GC G R D + D + K + LEIN PGMT S+ P A G SF EL+L Sbjct: 242 KKAWDTLGCNGCGRIDVILD-SNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300 Query: 292 MVE 294 ++ Sbjct: 301 ILN 303 >gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10] Length = 364 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSLS+ A +A + +++ + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEIVPFYISKQGTWRIGSKMSAPFARQEEL 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR + + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLKNIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193 GSS+GI K + + + + D++++E++VD E+ V+G+ + Sbjct: 188 GSSVGISKAKNREQLKAAIESAL--RFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347 >gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5] gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 364 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S + AL+ F+ I +D+ ++ P Sbjct: 6 VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKQGHWHLNDTSNFLINQENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + ++ Sbjct: 66 LIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMADL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA+ MDK SK+++ G+ V P I ++ + P +K Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARETLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVDNEAEYEAAVELAL--GFDHKVLVESAVRGREIECAVLGNDQPIASG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ PA I ++ + ++ LA A Q +GC G++R D Sbjct: 244 CGEIVVSNGFYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLGCSGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ G S+ EL+ ++E A Sbjct: 304 FLTDE-GEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIELA 350 >gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 157/346 (45%), Gaps = 54/346 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG SSE EVSL S + ++ + ++V + + + +L Sbjct: 7 LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG +Q + +L +IP+ Sbjct: 67 GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPL 133 G+LASA+SMDK +K V++ VP + + + S PY IKP Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + L ++ H ++LIE+ + G E+ + + Sbjct: 187 NAGSSVGISKANNKEELISGLYEAV--KHDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY++ S V+ A +P +I ++++ A A+ +G+SR DF Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + ++ + EIN PG T +S++P + A G S +E++ ++E AS Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349 >gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis BCM-HMP0060] Length = 362 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A] gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A] gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis SK135] gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU028] Length = 357 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL 2338] gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 362 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 57/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + + L+ F+V + + + VLA P Sbjct: 8 VAVVFGGRSTEHGISCVSAGSVLAHLDRDRFEVVPVGITKEGAWVLAGDDPEALEIQDRR 67 Query: 52 -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 D+ F VLHG FGEDG +Q +LE+ Sbjct: 68 TPEITSGKAVALPGDPTRDLMYLEPGRGGEVLSSVDVVFPVLHGAFGEDGTIQGLLEMAG 127 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKP 132 +PY G+L+SA++MDK +K+++++ G+ V ++ R + + P +KP Sbjct: 128 VPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRERLGLPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 + GSSLGI + + + ++ +++IE V G E+ CGV+ V Sbjct: 188 ARAGSSLGITKVTDHADLDDAIAEARRT--DPKVIIESAVTGREVECGVLEFPDGRVEAS 245 Query: 193 AVP------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 S +Y YE KY + +PAKI D + ++ A A +A+ C+G++R Sbjct: 246 LPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRALECQGLARV 305 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF ++ E+N PG T +S++P M A G + LL ++E A Sbjct: 306 DFFV-ADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETAIAR 357 >gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2] gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 341 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S E VS+ S A L+ ++ I + + L H Sbjct: 6 IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + DL F VLHG FGEDG +Q +LEL IPY I Sbjct: 66 PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYVKPARSGSSFGVTKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE+ V G E+ C + G+ + + + Sbjct: 186 RQEELLSAVEIAR--QYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 HQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVDMFL-KEDGTVI 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S FP M A AG F E++ +V A Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340 >gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM 16841] Length = 351 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 165/345 (47%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G + AL + G V +DV D+ L Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +L I YT +G L+SAL+MDK +KQ+ + G+P I + + + P V Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D L+IE+YV+G E + GV+ D Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVI-DYKALP 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P FY Y+ KY + ++ PA++P +I +++Q A + +G SRSDFL Sbjct: 240 IIEIAPIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + +++ LE N PGMTP S+ P+ A G +F +L ++E Sbjct: 300 LN-KNNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343 >gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP] Length = 360 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 35/333 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S E EVSLSS ++ +AL F+V+ + + + + Sbjct: 28 LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D+ F +LHG GEDG VQ +L L +P+ SG+L S++ MDK+ +K Sbjct: 88 GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147 Query: 98 QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +V+ + G+P +R + P +KP GSS+G+ + Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207 + L + + + E+ G+ D +DFY Y+ KY+ Sbjct: 208 LAEALELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRFDTDFYDYDTKYT 267 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 + ++PA +P + + +Q LA A+QA+ C G+SR DF + + ++ EIN PG Sbjct: 268 GGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINTMPG 327 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T S++P + G S+ EL+ ++E A R Sbjct: 328 FTTTSMYPSLLQAHGLSYPELVTRLIELALEER 360 >gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 364 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM 15053] Length = 354 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 147/351 (41%), Gaps = 51/351 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSL SG L + G K +DV Sbjct: 3 IIVLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG+ GE+G +QA Sbjct: 63 EIASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129 ++L I YT L A+SM+K+ +KQV VP + T + + P V Sbjct: 123 DVLGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSSLG+ + ++ + +S +H D+++IE ++ G E CG++ +L + Sbjct: 183 VKPCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI F + P + K++QR A A+ +R+DF+ Sbjct: 243 VEIIPRDEVFSYENKYQDGGATEICPPVSLDAKTMKKIQRAGEKAFDALRMDVYARADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + + LE+N PGMTP S+ P A AG + EL ++E++ +R Sbjct: 303 VDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353 >gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275] Length = 293 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 144/293 (49%), Gaps = 9/293 (3%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGNFG 63 MGGISSERE+SL SG +L+ ++ ++ +D ++ D AF LHG FG Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDS 120 EDG VQ++LE +IPY+ G L+SA+ MDK SK++ + G+P I + D Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP GGSS+ +IK+ I + Q +++IEQY+ G E T Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEV--DTEVMIEQYLPGEECTSF 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ + +F+ +E KYSS N + + ++ + + A C Sbjct: 179 ILDGEVFPTV-SIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R R DF+ + + LE+N PG+T S+ P AA G S+ +LL ++ Sbjct: 238 RAYVRVDFII--SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLI 288 >gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2] Length = 356 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 148/338 (43%), Gaps = 43/338 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49 + +L GG S+E EVSLS+ A A++ ++V I + + + L Sbjct: 5 IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64 Query: 50 -------KP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 KP D+ +LHG GEDG VQ +LE+L IPY +G+LAS Sbjct: 65 QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSS 138 + MDK+ KQ+ G+ P + R D+ P +KP GSS Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFVKPANLGSS 184 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + + + + ++ ++ + IE+ + + V P Sbjct: 185 VGISKADNREELIVAVKEALKFDRKIVIEQGVVAREIEVGVLGNDEPACSVAGEIKPLKA 244 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY N+ ++PA++ +Y ++ A A + + C G+ R+DF + ++ Sbjct: 245 FYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADFFVTA-NNEIL 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S+FP + + G + EL+ ++ A Sbjct: 304 INEVNTLPGFTPFSMFPLLWEHTGVPYPELIERLITLA 341 >gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 353 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 50/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG SSE EVS S + ++ + + + + + +L Sbjct: 6 IVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITSGVWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + K D+ F VLHG FGEDG VQ +LEL +PY Sbjct: 66 GKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLK 134 G+LAS++SMDK+ +K +V S G+ +N+ ++ IS P IKP Sbjct: 126 GVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS GI + + L +++ H ++L+E+ + G E+ C V +A Sbjct: 186 AGSSKGITKAHNRDDLIVGLKEAA--EHDRKILVEETIVGREIECAVLGGMEAKASGVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY Y+ KY++ +S ++ ++P +E+ A +A+ +SR DF + Sbjct: 244 ILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEK 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + ++ + EIN PG T +S++P + G + +L+ +++ A Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350 >gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909] Length = 357 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341 >gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144] Length = 362 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346 >gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM] Length = 271 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 122/276 (44%), Positives = 168/276 (60%), Gaps = 8/276 (2%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D GF+V ++D + L +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+LA Sbjct: 2 RDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL+MDK +SK V G+PV S+L R + ++H+++PPYV+KP GSS+G+ ++ + Sbjct: 62 SALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVHE 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + P L + +++E Y G ELT V+GD +L VT+I +Y Y KY Sbjct: 122 AANAPPQLSDDMP----ETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAKY 175 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S S H PA +P +I + A AH A+GCRG+SR+DF +D + LE N Sbjct: 176 SVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDEARGVDGLIVLETNT 235 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE AA G SF +L W+VEDASC R Sbjct: 236 QPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271 >gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088] Length = 310 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 6/300 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG SSEREVSL SG L +V +D S + D FN+LHG Sbjct: 11 VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNSN-WLEQLDGVDFVFNILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ +L L +P + SG+L +AL MDK+RSK + G+PV + ++ T Sbjct: 70 GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVLASDTDFE 129 Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S +KP GSS+G+ + + + +S + + E+ + G E T Sbjct: 130 AVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSAS--EYQGPVFAERRIVGEEYTV 187 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++GD +L + FY Y KY S ++ + P + + E+ LA A +AI Sbjct: 188 AILGDRALPAIRL-QAHEIFYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAID 246 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C R DF+ D + + LE N PGMT S+ P A AG S + LL ++E + Sbjct: 247 CAVWGRVDFMVDQQ-GQPYILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIELSLAR 305 >gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1] gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1] gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1] Length = 364 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ + F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +LASA MDK +K+++ G+ + P I N + + + P +K Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC 17982] Length = 378 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 70/363 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE E+S S+ +A++ + V + Sbjct: 11 IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70 Query: 37 -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68 D D V+ D+ F +LHG +GEDG + Sbjct: 71 SVTAGSTRVALTPGEGNLVELTYEGDPDSPDSRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120 Q + E+ + Y G+ +SA+SMDK +K V V + MD Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGQWELVTARQWDADSTACMDR 190 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P+ + +++ NH ++++E + G E+ CG Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASISGREVECG 248 Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G S + EI VP+ +FY YE KY PA + + ++ A+ A Sbjct: 249 VLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVVGLSCPADVAPEYADRIRETAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D S V E+N PG TP+S++P+M A AG S+ +LL ++ Sbjct: 309 FDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPISMYPQMWAAAGLSYPDLLTELLT 368 Query: 295 DAS 297 +A+ Sbjct: 369 EAA 371 >gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM 17241] Length = 357 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 140/348 (40%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +AVL G ISSE EVSL S + + + V + + + + + Sbjct: 6 VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65 Query: 52 --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 D F VLHG EDG +Q +LE+ + Y Sbjct: 66 QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPS--------ILVNRFTMDSQHLISPPYVIK 131 G+LASA MDK + ++ + G+ + P + P IK Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLD 188 P GSS+G+ K + L ++ +++ E V G EL C A Sbjct: 186 PANTGSSVGVGKAKDAGGLCAALSEAF--RFDRKVIAETAVVGDELECAVLGNFDRAEAS 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 VP+ +FY Y KY ++ +PA+I + + +++ A A A+GC G+SR DF Sbjct: 244 CVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRVDF 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ G + EL+ ++E A Sbjct: 304 FLTRE-GRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350 >gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 308 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 12/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 ++VL GG S ER VSL SGK A L+ G V +D+ ++ LA +P+L F L Sbjct: 3 ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 HG +GEDG +QA+L++ +PYT SG A++MDK SK ++ G+ V + V+ Sbjct: 63 HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + V+KP GGS++ ++ ++ + L + ++ L+E YV G Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKALSSAWELE--NRALVEAYVAGR 180 Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ELT V+ D +P +FY Y K S +V PA + + + V R A Sbjct: 181 ELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAK-YGGGSRYVSPADLEPSVVEVVSRSAE 239 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +AH+ GC SR D D + F LEIN PGMT S+ P+ A G+SF +LL + Sbjct: 240 IAHRVSGCSIYSRVDIRLDGK-NRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHI 298 Query: 293 VEDA 296 VE++ Sbjct: 299 VEES 302 >gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826] Length = 306 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 158/298 (53%), Gaps = 8/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG SSEREVSLSSG A AL +G +D D L AF VLH Sbjct: 8 VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG VQAIL+ IPYT SG+LA AL+MDK+ +K+V + G+PV P ++++ T Sbjct: 68 GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127 Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + + IKP GSS+G+ + + ++ ++++ E +V G E Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAGGIR--EKIMAEPWVTGRE 185 Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 LT V+G L E+ FY Y+ KY + ++ + P I + +++ L A Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 AIG +G +R DF+ D + + LEIN+ PGMT S+ P A G F L+ ++ Sbjct: 246 DAIGAKGWARVDFILDG-DNRPWILEINMVPGMTSHSLVPLAAREDGMDFVALVRQIL 302 >gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 315 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 155/310 (50%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V Q DVD S+ L + PD F VLHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------ 116 GEDG ++ +L+L +PY + A + DK + +V S G+ S+++ Sbjct: 69 GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP +GGS+LG +++ +P + + + +G LIE+YV Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAM--VNCYAYGPVALIERYV 186 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G E+ V+ P S FY YE +Y++ + V+PA++ + + Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQPDSGFYDYEARYTAGATQFVVPARLDAAVAAACAQ 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+A+G R +SRSD + D ++LE+NV PGMT S+ P A AG L Sbjct: 247 AAVTAHRALGLRDLSRSDLVVDAQ-GVPWFLEVNVAPGMTETSLVPLAAEAAGIELGVLC 305 Query: 290 LWMVEDASCL 299 ++ A+ Sbjct: 306 RDLLATAAAR 315 >gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8] Length = 372 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S E E+SL S ++ A++ + V ++ + + + + Sbjct: 8 VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F VLHG FGEDG +Q + EL +I Y SG+L Sbjct: 68 SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGS 137 S+ MDK K++ + G+P+ P + + R + + P +KP GS Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEI 192 S+GI +K + + + ++S++ + G+ E+ V Sbjct: 188 SVGISKVKSRADLAVAMDLAASFDRKIVIEQGVGGPGVKPRELEVAVLGNDTPEASVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 VP +FY YE KY + ++PAK+ K+++ +A A +A C G++R DFL Sbjct: 248 IVPAKEFYDYEAKYELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLARVDFL 307 Query: 250 FDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P S+ ++ EIN PG T +S++P++ +G ++ +L+ ++E A Sbjct: 308 MAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIELA 358 >gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 289 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D S L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125 L++PYT SG++ASAL+MDK+R+K V + +P+ P + +NR + + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L+++ H +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQASELQAALVEAF--RHDTDVLIEKWLSGPEFTVAILGDE 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P Y YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARESGLSFSQLVARILMLA 288 >gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE] Length = 401 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 152/366 (41%), Gaps = 70/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SAL+ + V I + R L P Sbjct: 35 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 95 VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 LEL +PY +G+LASA+ DK K+V +S G+PV P +V + Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + + + ++ H + L+E + G E+ Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEAR--RHDPKFLVESLLRGREIE 272 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ ++PA + + EV+RLA A Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSAAGLVPAPLTEEQTAEVRRLAVDA 332 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 333 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 391 Query: 295 DASCLR 300 A+ R Sbjct: 392 -AALNR 396 >gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium] Length = 343 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VSL S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ V Y Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a] gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia K279a] Length = 404 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 141/348 (40%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE EVSL S K AL+ F+ + +D+ L+ Sbjct: 46 VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ ++HG GEDG +Q +L ++ + Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 P+ S +L SA++MDK +K+++ + + + P +K Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K L + + ++L+E V G E+ C V+G+ + Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALAL--RYDHKVLVESAVVGREIECAVLGNEHPQASV 283 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N+ V+PA I ++++A A+Q + C G++R D Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVDV 343 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G + L+ ++E A Sbjct: 344 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 390 >gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus] Length = 345 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E VS+ S + A +L+ ++ I + + L Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 +Q + L + ++LIE+ V G E+ C +MG+ V + + + Sbjct: 186 TEQELKAALETAR--EFDSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + NST + PA IP + VQ A ++A+GCRGI+R D V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340 >gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA] Length = 308 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59 +A+L GG SSER +SL SGK A++L+D G + ID +A ++ D F LH Sbjct: 8 VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q IL+ ++ YT +G +S + K+ +K++ S +P P +N+ + Sbjct: 68 GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127 Query: 120 SQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q I P +IKP GSS+G+ + L++S + ++IE+ Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVESF--KYDRYIIIEK 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G E T ++ + + D ++ P ++++ Sbjct: 186 YIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKFVEYICPGGSSQSKEILIKKI 245 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A++AIGC G+SR D + + LEIN PGMT S+ A +G SF +L+ Sbjct: 246 ALAAYKAIGCFGLSRVDLKQN-YDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFSKLVG 304 Query: 291 WMV 293 ++ Sbjct: 305 KIL 307 >gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 379 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 153/365 (41%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SA++ + V I + L P Sbjct: 13 VAVVFGGRSSEHAISVVTAGAVLSAIDRDKYDVLPIGITTDGRWALTADAPERMAIADRA 72 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 73 LPNVADLAESETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 132 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY +G+LASA+ DK K+V S G+PV P ++ + Sbjct: 133 LLELSGVPYVGAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIV 192 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + + + ++ H ++L+E + G E+ Sbjct: 193 EFAAEHGWPLFVKPARGGSSMGITKVDDLSGLDEAIEEAR--RHDPKILVESLLRGREIE 250 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + +++ ++PA I + E+QRLA A Sbjct: 251 CGVLEFEDGPRASVPAEIPPVTNHDFYDFEAKYIDSASGIVPAPIGDEATAEIQRLAVAA 310 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 311 YEAVSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 369 Query: 295 DASCL 299 A Sbjct: 370 AALTR 374 >gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 370 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 364 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 364 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681] Length = 362 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------------VL 46 + ++ GG S E EVSL + A +A +++ + ++ L Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67 Query: 47 AHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136 ASA MDK K++ G+P N + + + P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194 SS+GI + + + + ++++E+YVD E+ V+G+ + V Sbjct: 188 SSVGISKANNREELEKAVDLAL--QFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S++P + G S+ LL M+ A Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMIALA 347 >gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22] Length = 385 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 152/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITREGRWFLTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVEELAESREGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 MLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQLDEAAARKKII 198 Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 199 DLAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIAEAQ--RHDPKILVEAALRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P++ Y ++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPPETHAYYDFDAKYIDSTPGIVPAPLTPEETAEVRRLAVDA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P M +G + EL+ +++ Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPAMWQASGIEYPELVDRLIQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] Length = 356 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S+E EVS+ + + +A+ + V I + Sbjct: 6 ICIVFGGKSAEHEVSILTAQNVLNAIGKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65 Query: 45 ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 +L D F +LHG GEDG +Q + E+L++PY +G+L++A Sbjct: 66 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P++ G S+ EL+ ++E A Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT 11859] Length = 313 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 150/302 (49%), Gaps = 8/302 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S EREVSL SG AL+ G V + D LA D AF +LHG Sbjct: 12 IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG++Q ++E L+IPYT SG+ ASA+ +DK +K V + G+PV +++ T Sbjct: 70 KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129 Query: 121 QHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + VIKP K GSSLG+ +K + + S G +L E+YV G ELT Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189 Query: 179 C---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + Y +E KY S + +V PA++P ++ ++++ + A Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGDYDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKAA 249 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+G SR D + LEIN PGMTP S+ P A G S+ EL+ + Sbjct: 250 LAVGADAWSRIDVILRG-DGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAAR 308 Query: 296 AS 297 AS Sbjct: 309 AS 310 >gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 289 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLIS 125 L++PYT SG++ASAL+MDK+R+K V + G+P+ P I +NR M + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L ++ H +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQADQLHGALEEAF--RHDSDVLIEKWLSGPEYTVAILGDN 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P Y YE KY S + + P+ + ++ +++ L+ A+QA+GC G R Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 288 >gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_07A21] Length = 363 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 6 VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L + D+ F +LHG +GEDG VQ +LEL + Y + Sbjct: 66 PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPL 133 G+ ASA+ MDK+ ++ + ++ G+P ++ R P +KP Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEHDYPLFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVT 190 GSS+GI Q + L +S + +L+IE+ V+ E Sbjct: 186 NLGSSVGISKAHDRQGLQAGLELAS--QYDTKLIIERSVENARELECAVLGNEYPKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P ++FY Y KY S V+PA + + ++ LA +AI C G++R DF Sbjct: 244 GEIIPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVDFFM 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 P V EIN PG TP+S++P++ A AG ++ +L+ +++ Sbjct: 304 RP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346 >gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 355 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 154/350 (44%), Gaps = 56/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+EREVS+SSG A AL G +V +D Sbjct: 3 IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62 Query: 38 ----VDRSVGLVLAHLK------------------------PDLAFNVLHGNFGEDGLVQ 69 + V + ++K D+ F LHG GE+G +Q Sbjct: 63 DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A L+L I YT SG L SAL+M+K +K V + L P + Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINTPSGELYKNEKDALAWN-MFPCI 181 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + ++ + D++++EQ+V G E + G++G +L Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEAL--KYEDEIVVEQFVTGREFSVGLIGGKALPP 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PKS Y Y KY + + PA I + K+++ A A++A+ +R DFL Sbjct: 240 I-EIAPKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 D + LE N PGMTP S+ P+ AA G S+ +L ++E + Sbjct: 299 LD-KGGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIEISLAK 347 >gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123 +LE L +PY GILASA+ MDK+ K+ + + VP P + + T + Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181 + P +KP + GSS+GI + + + ++ H +L+EQ V G EL CGV Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAF--RHDHVVLVEQGVTGRELECGVL 244 Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ Y KY ++PA +P ++ + ++ L+ A AIG Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL+D + +F E+N PG T S++P++ A +G ++ E++ +V A Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAFTR 363 >gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028] Length = 302 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 154/295 (52%), Gaps = 5/295 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG S EREV+LS + L G +V+ D R + GL A + AF LHG+ Sbjct: 5 LIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120 GEDGLVQ +LE + +PY S AS L+++K SKQ+ + G+P V + + Sbjct: 65 PGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVAEW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + L+ P V+KP GGSSLG+ ++ + + L Q LL E + G ELTCG Sbjct: 125 RPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEIAGQD--LLAEALIRGQELTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ L I +F+ YE KY + + + PA IP ++ + +Q +A AH A+G Sbjct: 183 VLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 SR+DF+ + LE+N PGMT S+ P+ A G SF +LL ++E Sbjct: 243 SDYSRADFMVTA-DGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIEL 296 >gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Streptococcus pneumoniae SP3-BS71] gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141] Length = 321 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG+S EREVS +S K + +L G+ V ID+ + + + Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +D P VIKP++ GSS GI + + + + + Sbjct: 127 IVASSVGIKCAS-----NLMVDRIQANDFPIVIKPIRSGSSKGIKIFQNKKQFDIYYKEH 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +E+Y+ G E + G++G+ L V K+ FY Y KY+ + V+PA Sbjct: 182 PEL---GSVFVEKYIKGREFSVGILGETVLPVI-EIKVKNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582] Length = 368 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG S+E EVSL S K A++ F+V+ + +D+ + Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 LIALNHSNNNVALVPGQQSRQLIAADGAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ +G+L SA+SMDK +K+++ G+ V P + + P +K Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ Q + + + ++L+E + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSRVQDRQQYEAAVALAF--SFDHKVLVESAIVGREIECAVLGNDQPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y +N PA I +++++A A +A+ C G++R D Sbjct: 244 CGEIVLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ A +G +R+L+ ++E A Sbjct: 304 FLTADDN-VIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIELA 350 >gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2] gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2] Length = 309 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 168/304 (55%), Gaps = 13/304 (4%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG 60 A+L GGISSEREVSL+ G AL+ + + + D + ++ + D+A +LHG Sbjct: 7 ALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116 FGEDG VQ +L+LL+IPY +G+L SA++M+K+ SK++ G+P Sbjct: 67 PFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKVD 126 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P V+KP+ GSS+G+ ++K+++++ L + + +L+E YV G+E Sbjct: 127 LHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAALEKGFEQ--DEAVLLEAYVKGLE 184 Query: 177 LTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 LTC V+G+ ++ + +F+ Y+ KY + + + PA+I + K VQ A Sbjct: 185 LTCAVVGNQEIEAMPVIEILPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAHAI 244 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+ +G SR+D + R V LE N PGMT S+ P A AGYSF +LL + Sbjct: 245 EAHKALFLKGYSRTDMIL--SDRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLDRL 302 Query: 293 VEDA 296 +E A Sbjct: 303 IELA 306 >gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta] Length = 342 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 368 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 56/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 20 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79 Query: 39 ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++V +L D F LHG GE+G VQA+ Sbjct: 80 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 137 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVI 130 L+L +I YT SG LAS ++MDK SK+++ + ++ + Q P V+ Sbjct: 138 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 197 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GGSS+G +++ ++ + L + D++++E+++ G E + GV+ + ++ Sbjct: 198 KPNSGGSSVGTMIVHDEEELADSLRDAY--RFDDEIIVEEFITGREFSLGVVNEQAMPAI 255 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI V + + + + P I +++ E++R+A + +G R DFL Sbjct: 256 EIVVNDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFLV 315 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A AG S+ +L ++ Sbjct: 316 NDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 356 >gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 351 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 56/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG AL G + + ID+ Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62 Query: 39 ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++V +L D F LHG GE+G VQA+ Sbjct: 63 SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 120 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVI 130 L+L +I YT SG LAS ++MDK SK+++ + ++ + Q P V+ Sbjct: 121 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 180 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GGSS+G +++ ++ + L + D++++E+++ G E + GV+ + ++ Sbjct: 181 KPNSGGSSVGTMIVHDEEELADSLRDAY--RFDDEIIVEEFITGREFSLGVVNEQAMPAI 238 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI V + + + + P I +++ E++R+A + +G R DFL Sbjct: 239 EIVVNDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFLV 298 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A AG S+ +L ++ Sbjct: 299 NDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 339 >gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12] Length = 364 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 51/344 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG S E EVSL S + + L+ + + + +D+ + Sbjct: 8 VLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKDGLFYVHQYEDLLAYKDKLPV 67 Query: 49 ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + ++ F V+HG EDG +Q +LEL + Y +L+SA+ Sbjct: 68 VTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGI 141 MDK +++V G+ L++ D P +KP GSS+GI Sbjct: 128 MDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSVGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GVMGDASLDVTEI 192 K + + + + + +++L+E +V+G E+ + + Sbjct: 188 HKAKSMDELVVAVDDAL--RYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEIRV 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + S + ++PA + + E+++ A + C+G++R DF + Sbjct: 246 HHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFVND 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +++ EIN PG T +S++P++ +G ++ +LL ++ A Sbjct: 306 KTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLLDELIRIA 349 >gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 364 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 373 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 91/353 (25%), Positives = 153/353 (43%), Gaps = 59/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S E EVSL + A +++ + + ++ + + Sbjct: 7 IGLIYGGKSGEHEVSLQTAFAVLQSIDFSKYDITPFYITKKGDWKSGPALTAPVSSKEML 66 Query: 46 ---------------LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLE 76 L + D+ +LHG FGEDG +Q + E+ Sbjct: 67 MFGDREPAALDVFGGLQKREVVISSAIESQPETSVDVVLPLLHGTFGEDGTIQGLFEMAN 126 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PP 127 IPY +G+LASA+ MDK+ K+V + +P C R P Sbjct: 127 IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 186 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 IKP GSS+GI + + + ++ + +++IE++V+ E+ V+G+ Sbjct: 187 CFIKPANLGSSVGISKARNRDELIKAVEEAF--KYDRKVIIEEFVEAREIEVAVLGNEEP 244 Query: 188 DVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +V+ + SDFY Y+ KY NS V+PA IP + ++Q LA A +AI G+ Sbjct: 245 EVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQELAIRAFKAIDGSGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 SR DF + EIN PG TP S++P + +G + +LL +++ A Sbjct: 305 SRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLWKESGKPYAQLLDELIDLA 357 >gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046] Length = 357 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 144/339 (42%), Gaps = 44/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + +L GG S+E EVSLS+ KA AL+ F V I + + Sbjct: 5 IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64 Query: 48 ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F +LHG GEDG VQ LE+L IPY +G+L Sbjct: 65 QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGS 137 SA MDK+ KQ+ +P P R + + P +KP GS Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + + ++ + IEL ++ V P + Sbjct: 185 SVGISKATNAAELEKAVQFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIKPMT 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY Y+ KY ++ ++PA + D+Y + +A A +AI G+ R+DF + ++ Sbjct: 245 EFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADFFVTE-NNEI 303 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TPVS++P + + ++ +L+ +++ A Sbjct: 304 YINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342 >gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963] Length = 348 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 144/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E +S+ S + A L+ ++ I + +S L Sbjct: 6 VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + VV + G+ +V + P V+KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVVRNAGIATPNFWIVTADEDIDADRLPYPVVVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE+ V G E+ C ++G+ + + + Sbjct: 186 RKEELLSAVETAR--QYDSKVLIEEAVVGSEVGCAILGNDLDVIVGEVDQIRLSHGFFRI 243 Query: 206 YSSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + N T ++PA I + VQ+ A ++ +GCRG+SR D KV Sbjct: 244 HQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVDMFL-KEDGKVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S +P M A AG F E++ MV A Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMVSFA 340 >gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 289 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D AF LHG GEDG +Q +L+ Sbjct: 2 SLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLDF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 L++PYT SG++ASAL+MDK+RSK V + G+PV P I ++R ++ + Sbjct: 62 LQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP + GSS+G+ + + L ++ H + +LIE+++ G E T ++GD Sbjct: 122 LPLIVKPSREGSSVGMSKVNHASELNAALQEAF--RHDNDILIEKWLSGPEFTVAMLGDE 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L P FY YE KY S + P+ + +++ LA A+QA+GC G R Sbjct: 180 VLPSI-RIQPTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A AG SF +L+ ++ A Sbjct: 239 VDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVTRILALA 288 >gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM 30120] Length = 367 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 55/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E EVSL S K + L+ + F V I +++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L + ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFNAALDFAF--LFDVKVLIESAVKGREIECAVLGNEHPLASP 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V PA + DI +++ +A A+QA+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 304 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIEL 349 >gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585] Length = 321 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG+S EREVS +S K + +L G+ V ID+ + + + Sbjct: 7 IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66 Query: 50 ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D+ F HG GE+G +QAI ++ +I YT + L++A+SMDK SK Sbjct: 67 VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 V SS G+ +D P VIKP++ GSS GI +++ + + + Sbjct: 127 IVASSVGIKCAS-----NLMVDRIQANDFPIVIKPIRSGSSKGIKILQNKKQFDIYYKEH 181 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +E+Y+ G E + G++G+ L V K+ FY Y KY+ + V+PA Sbjct: 182 PEL---GSFFVEKYIKGREFSVGILGETVLPVI-EIKVKNGFYDYNNKYTVGAAEEVVPA 237 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 KI + +Q+ A+ H+A+G SR+DF+ D V+++E N PGMT S+ P+ Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296 Query: 278 AAYAGYSFRELLLWMVEDASCLR 300 A AG F L ++E + +R Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319 >gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7] gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402] gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7] Length = 346 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 149/337 (44%), Gaps = 43/337 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--- 51 VL GG SSE VS S + + L+ ++++ + +D G LA Sbjct: 7 VLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWLDN 66 Query: 52 --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D+AF VLHG +GEDG +Q + EL ++PY ++ S+++MDK+ +K Sbjct: 67 SSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIYTK 126 Query: 98 QVVSSCGVPVCPSILVNRFTM------------------DSQHLISPPYVIKPLKGGSSL 139 +++ + GVP S+ V + + P IK + GSS+ Sbjct: 127 KILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G + L +++ ++ + +E D + +P +F Sbjct: 187 GCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELETAVLGNDDVIVSRVGQIMPHGEF 246 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y++E KY S +PA + I +++++ A +A+ G+SR DF D + K++ Sbjct: 247 YTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTNKIYL 306 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P++ G ++ ELL ++ A Sbjct: 307 NEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVLA 343 >gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395] Length = 357 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 158/337 (46%), Gaps = 44/337 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 VL GG+S+E +VS S +A + + +++ + +D+ Sbjct: 9 VVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAELP 68 Query: 45 --------------VLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 VLA D + F +LHG GEDG VQ +LEL ++PY G+LAS+ Sbjct: 69 NSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLASS 128 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGI 141 + MDK +K+V + +P C + D + P +KP GSS+G+ Sbjct: 129 VCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVGV 188 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDF 199 + + + + + + D ++IE+ V G E+ V+G+A+ D + P S+F Sbjct: 189 SRAETLEELDAAINVAL--RYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVKPGSEF 246 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY + + ++PA + + +V+ LA A A+ C G++R DF ++ R Sbjct: 247 YDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGWLL 306 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S++P+M G + +L+ +V A Sbjct: 307 NEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLVTLA 343 >gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus] Length = 345 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E VS+ S + A +L+ ++ I + + L Sbjct: 6 IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q + EL IPY + Sbjct: 66 PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VVSS G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 +Q + L + ++LIE+ V G E+ C +MG+ V + + + Sbjct: 186 TEQELKAALETAR--EFDSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + NST + PA IP + VQ A ++A+GCRGI+R D V Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340 >gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14] Length = 385 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + ++V I + L P Sbjct: 19 VAVVCGGRSSEHGISVVTAGAVLRAIDRSKYEVLPIGITTDGRWALTADDPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDELAESTEGGVVLPVDPHNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ D Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYVVIRPREWDRDPAAARKKVV 198 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++L+E V G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDGLAGLDEAIEEAR--RHDPKVLVEAAVRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P+ Y ++ V+PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKYIDSTPGVVPAPLTEEQTAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P+M G S+ EL+ +++ Sbjct: 317 FEAASCEGLVRADFFL-AEDGGFVINEINTMPGFTPISMYPKMWEATGVSYEELVDRLIQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 378 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 70/365 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE EVS ++ +A++ + V + Sbjct: 11 IVFGGRSSEHEVSCATAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALAFRDGKGQ 70 Query: 37 -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68 D D + V+ D+ F +LHG +GEDG + Sbjct: 71 SVTAGATRVALTPGEGNLVELSYDGDPDSAASRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120 Q + E+ + Y G+ +SA+SMDK +K V V ++ Sbjct: 131 QGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGIDVGRWELVTARQWESDPGACVER 190 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P + +++ NH ++++E V G E+ CG Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEAA--NHDPRVIVEASVSGREIECG 248 Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G + EI VP+ +FY Y+ KY PA++ + ++ A+ A Sbjct: 249 VLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVVGLSCPAEVSAAYAQRIRETAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D + V E+N PG TP+S++P+M A AG ++ +LL ++ Sbjct: 309 FDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPISMYPQMWAAAGLNYSDLLSELLT 368 Query: 295 DASCL 299 +AS Sbjct: 369 EASTR 373 >gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase Length = 343 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 137/338 (40%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ V Y Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q ++ +GCRG++R D ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDR-GRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG S EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLA 340 >gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 377 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + V+ GG S+E EVS +S A AL + G +V + + R+ G+ L Sbjct: 7 IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66 Query: 47 -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69 H + D+ F VLHG +GEDG+VQ Sbjct: 67 AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123 +LE L +PY GILASA+ MDK+ K+ + + VP P + + T + Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181 + P +KP + GSS+GI + ++ + ++ H +L+EQ V G EL CGV Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDNLIAAVEEAF--RHDHVVLVEQGVTGRELECGVL 244 Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ Y KY ++PA +P ++ + ++ L+ A AIG Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R DFL+D + +F E+N PG T S++P++ A +G ++ +++ +V A Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVVDRLVALAFTR 363 >gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + L +++ H ++L+E+ + G E+ C V + Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P +++ + A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2] Length = 324 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 156/297 (52%), Gaps = 11/297 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFNVL 58 +L+GG SSER +SL SG+ AL+ AG V+ +DV R L D AF +L Sbjct: 12 LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116 HG GEDG +QA+LELL IPYT + + SA+ MDK+ K++ G+P P + Sbjct: 72 HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P ++KP+ GSS+G+ + + + +++ + Q+++E+Y+ G E Sbjct: 132 AHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARY---GQVMMERYIRGGE 188 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 T ++G +L V ++ P Y ++ KY + ++ + +P+ + + +Q +A A + Sbjct: 189 YTVSLLGGRALPVIRLSTPHDF-YDFDAKYLANDTEYTIPSGLSAEEESAMQAIALKAFE 247 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 IG G R DF+ D + + +E+N PGMT S+ P A G EL L ++ Sbjct: 248 QIGGSGWGRVDFMRDEH-GQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGIL 303 >gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E EVSL S K A++ F V + +D+ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAF--EFDHKVVVEQGIKGREIECAVLGNDFPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA + I +++ +A A+QA+GC G++R D Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + V EIN PG T +S++P++ +G S+ +L+ ++E A Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLELA 350 >gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131] Length = 372 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 55/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E EVSL S K + L+ F V + +++ Sbjct: 11 VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 71 RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I V + + P IK Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L + ++LIE V G E+ C V+G+ + Sbjct: 191 PANQGSSVGISKVSTESEFYAALDFAF--LFDMKVLIESAVKGREIECAVLGNEEPLASP 248 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V PA++ + +++ +A A++A+ C G+SR D Sbjct: 249 CGEIVLHDSFYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSRVDV 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + V EIN PG T +S++P++ AG ++ +L+ ++E Sbjct: 309 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIEL 354 >gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68] Length = 342 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S + M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYTRMVAAAGITLPALIDSLITLA 339 >gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 385 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 98/362 (27%), Positives = 155/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLNAIDRTRYDVLPIGITREGRWALTADEPARMAIVDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 PPDVEELAEAAEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYVVIRPREWERDRSAARKRIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDGLAGLDEAIEEAR--RHDPKILVEAELRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P + Y ++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKYIDSTPGLVPAPLTAEETAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF + EIN PG TP+S+FP+M G S+ EL+ ++E Sbjct: 317 FEAASCEGLVRADFFLTEE-GEFVINEINTMPGFTPISMFPQMWQATGVSYGELVDRLIE 375 Query: 295 DA 296 A Sbjct: 376 SA 377 >gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27] Length = 344 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 168/343 (48%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL+GG+S+ER+VSLSSG A AL + G +V +D V Sbjct: 7 ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66 Query: 50 -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D F LHG GEDG +QA+L+++ +PYT SG Sbjct: 67 PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGS 137 LASAL+MDK SK V+ S GV I+ D + P V+KP K GS Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 ++G+ +++ + + + ++ + D+++IE++V G ELT G++GDA L P Sbjct: 187 TVGLSIVRAPEELAAAVREAF--RYDDEVMIERFVPGRELTVGILGDAVLPTI-EIQPVK 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + Y YE KY+ + + A++ + ++ A A QA+ RG +R DF DP + Sbjct: 244 ELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDPQ-GQP 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + LE N PGMTP S+ P+ AA AG F +L +V+ A R Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344 >gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442] gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442] Length = 294 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 102/295 (34%), Positives = 153/295 (51%), Gaps = 7/295 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG SSERE+SL SG A +AL+ G D + L AFN+LHG +GE Sbjct: 1 MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHGTYGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--H 122 DG VQ LELL IPYT SG+ ASA+ MDK R K + + G+PV +++ T Sbjct: 61 DGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDAVEE 120 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP GSS+G++ +K + + +++ E+++ G E +C V+ Sbjct: 121 KLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYSCPVL 178 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCR 241 L +P ++FY YE KY+ ++ + P++ + + + R A QAIG Sbjct: 179 NGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAE 237 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D K++ LEIN PGMT S+ P+ AA G F +L + +++ A Sbjct: 238 SCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291 >gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + L +++ H ++L+E+ + G E+ C V + Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++ ++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + L +++ H ++L+E+ + G E+ C V + Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++V++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915] Length = 346 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+S E +S+ S K A AL+ ++ I + R L Sbjct: 6 IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V+SS G+ +V M + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFVKPARSGSSFGVTKVT 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + ++ + ++LIE V G E+ C ++G+ + + + + Sbjct: 186 GPEQLRSAVAEAR--QYDSKVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFRI 243 Query: 206 YSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + NS ++PA IP + VQ A ++A+GCRG++R D V Sbjct: 244 HQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVDMFL-KEDGVVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S E++ MV A + Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMVSLALTGK 344 >gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] Length = 344 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGI 84 + D+AF VLHG G L IPY I Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDI 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 QSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KS 197 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 NGTEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFR 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 IHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 VLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 341 >gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551] gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319] Length = 360 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 52/344 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50 +L GG S+E +VSL + A + A+ ++V I + + + +A L+ Sbjct: 6 GLLYGGKSAEHKVSLQTALAVSKAINHDKYEVHPIYITETGKWIRGTQLTGPLETVAQLE 65 Query: 51 P----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG VQ +LELL IPY + Sbjct: 66 IQDNGTAISPVSLNTEMFALTDSKTDDQLDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLK 134 G+LASA MDK+ KQ+ + G+P + R ++ + P +KP Sbjct: 126 GVLASAAGMDKVVMKQLFAQAGLPQVEYVSFIRREWEADRTAAYEKVETLGYPCFVKPAN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEI 192 GSS+GI + + +++ ++++E G E+ +A+ V Sbjct: 186 LGSSVGISKCDNREELEAAFVEAF--LFDRKIIVEAAAVGREVEIGVLGNDEAACSVVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +PK FY Y+ KY ++ ++PA+I + ++E+ LA A +AI G+ R+DF Sbjct: 244 ILPKKAFYDYKAKYEDGDTGLIIPAEITEEQHQEMSALAIKAFKAIDGSGLVRADFFLTS 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K E+N PG TP S+FP + +AG + +L+ +V A Sbjct: 304 E-GKFIINEVNTMPGFTPFSMFPLLWKHAGVEYPDLIEKLVSLA 346 >gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469] Length = 319 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 155/309 (50%), Gaps = 10/309 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AV+ GG S E E+++ SGK CA+AL++AGF V +DV ++ + LA D+ + + Sbjct: 11 VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+P I V T+ Sbjct: 71 HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130 Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS G+ + + +P L + + Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIEECVV 190 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 I + + + V +FYS + KY + HV+PA++ +Y Q LA Sbjct: 191 GTEITVPVIGNDNPTALPIVEIVTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQELA 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH A+GCRG+SRSDF+ + LE N PGMT S+ P+ A G F EL Sbjct: 251 IKAHNALGCRGVSRSDFIVTE-DGEPVVLETNTIPGMTARSLLPDSARTGGIDFPELCTR 309 Query: 292 MVEDASCLR 300 +E A R Sbjct: 310 FIEFALEDR 318 >gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium NaphS2] Length = 311 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 13/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +AVL GG S ER VS+ SG A AL + + D + L+ + DL NVLH Sbjct: 7 IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115 G FGEDG +Q +LE+ +P+ S +L+SA++M+K SK+V + G+ V I++ R Sbjct: 67 GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + ++ P VIKP+ GSS+GI +++ D I + ++ +++L+E+YV+G Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGIEKAF--EFAEEILVEEYVEGR 184 Query: 176 ELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T VPK F+ ++ KY + S + PA + DI ++ + Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+++ CR SR+D + +++ LE N PGMT S+ P A G+S LL Sbjct: 245 KKAHRSLRCRDWSRTDMMI--KKDQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302 Query: 292 MVED 295 M+E Sbjct: 303 MIET 306 >gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 356 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITNEIESTEDL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RIDNIPTGEISQLLSKGSSGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +S P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEDELKSGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341 >gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603] Length = 356 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A++ ++V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITSEIESTEDL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RIDNIPTGEISQLLSKGSLGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + +S P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ V+ E+ V+G+ + T V Sbjct: 186 GISKCNNEDELKSGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341 >gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402] gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 349 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE EVSL S A + + I + R+ Sbjct: 6 IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + + + D VLHG GEDG VQ ++EL +IP Sbjct: 66 QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G+LASAL MDK R+ Q+V + G+ V S+LV+ + ++ P +KPLK GSS G Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSD 198 I + K + + L + N+ +++++E+ V+G E+ C ++G+ L + Sbjct: 186 ISKVVKMEELTKALEYAF--NYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ Y+ KY+ ST +PA+I +++Q A + +Q + C+ +R D P + ++ Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTP-NNEIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T S FP+M G+ F EL+ +V Sbjct: 303 FNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIV 337 >gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7] Length = 343 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 51/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLV-- 45 + VL GGIS+ER+VSL SG AL+ G +V +DV ++ V Sbjct: 3 IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62 Query: 46 ---LAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILEL 74 + P D+ F LHG GE+G +QA +L Sbjct: 63 VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I YT + ++SA+ M+K SK + ++ GVP I + + + P V+K Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGIRLKKG-ETPDVKVPYPCVVKACC 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+++ ++ + ++++IEQY+ G E + GV+ + Sbjct: 182 GGSSVGVVMANN--DEEYAAALEEAFKYDEEVVIEQYIKGREFSVGVVDGKA-YPIIEIA 238 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P FY Y+ KY + ++ PA++ + +Q A A + + + +R DF+ D Sbjct: 239 PIHGFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDEKE 298 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE N PGMTP S+ P+ A G + +L +++ Sbjct: 299 D-FYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337 >gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + L +++ H ++L+E+ + G E+ C V + Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P +E ++ A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 370 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S+E EVSL S K A++ F V + +D++ + + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ S + Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDSPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] Length = 363 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S + ++ + + I + + L Sbjct: 6 VGIIFGGQSGEHEVSLMSCVSVIQVMDKTKYDIIPIGITKKGNWKLFLGDISKIENGSWE 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D+ F VLHG GEDG VQ++ EL+ IPY Sbjct: 66 DEAIPALLSPDPSCKCVITLKDGMESRYYLDVVFPVLHGPRGEDGTVQSLFELMNIPYVS 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKP 132 G+ +SA+ MDK+ SK+++ G+P+ + + + + P +KP Sbjct: 126 CGVTSSAICMDKVFSKKILEQSGLPIVDYKAFYKRELLARMPEIISEVEEFLGYPCFVKP 185 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + ++ + ++L+E+++D E+ C V+G+ + + Sbjct: 186 ANLGSSVGISKAGGPSELESAMRLAT--QYDTKILVERFIDAREIECAVLGNDEPNASLP 243 Query: 193 --AVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P DFY Y KY + + +L PA + +Q LA A + + C G++R DFL Sbjct: 244 GEIIPSRDFYDYTAKYLDGDKSKLLLPAPVSRKDITRIQELAIKAFKTLDCSGMARVDFL 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S ++ E+N PG T +S++P+M +G S+++L+ ++ A Sbjct: 304 MSKVSGNIYINELNTIPGFTRISMYPKMWEISGLSYKDLIDKLINLA 350 >gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098] Length = 304 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 157/295 (53%), Gaps = 5/295 (1%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61 ++ GG SSEREVSL+ + AL G V+ D+ + +L + D A LHG+ Sbjct: 5 LIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGLVQA+LE + PY SG S L+++K +KQ+ G+P R Sbjct: 65 PGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAEGW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +K GGSSL + Q + D + + G+ +LIE + G E+TCG Sbjct: 125 EPRLPWPLFVKTTTGGSSLRLGRATNRQEL--DAIMDEIFAAGEGVLIEPQLPGKEITCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ ++ I D++ YE KY++ + + PA + + EVQRLA AH+A+G Sbjct: 183 ILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G SR+DF+ P + LE+N PGMTP S+ P+ AA G F +LL ++E Sbjct: 243 KGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIEL 296 >gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814] Length = 354 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 51/351 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR------------ 40 + VL GG+S ER+VSL SG L + G + +DV D+ Sbjct: 3 IIVLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGL 62 Query: 41 ----------SVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 L +PD + F LHG+ GE+G +QA Sbjct: 63 EISKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129 + L I YT L LSM+K+ +KQ+ + GVP + T + P V Sbjct: 123 DNLGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G+ + ++ + +S ++ D+++IE ++ G E CG++ +L + Sbjct: 183 VKPCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPL 242 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 EI F + S P + + + +QR A +A+ SR+DF+ Sbjct: 243 VEIVPKDGLFDYANKYQAGGASEICPPVSLDEETQELIQRAGERAFEALRMDVYSRADFI 302 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + LE+N PGMT S+ P+ A AGY + EL +++++ R Sbjct: 303 VSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQESIKAR 353 >gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis] gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 PEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339 >gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1] Length = 345 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 150/337 (44%), Gaps = 43/337 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 ++ GG S+E +S S + + + ++ +++ + + D Sbjct: 6 IICGGQSTEHIISRMSCTSVLKNINKEKYDITLAGIEKDGTWYILNQTQDDLVNDSWLEG 65 Query: 53 ---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + + VLHG +GEDG +Q +LEL E+PY +L S+++MDK+ +K Sbjct: 66 AVKVEDVYGLLRQQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTK 125 Query: 98 QVVSSCGVPVCPSILVNRFTMDS------------------QHLISPPYVIKPLKGGSSL 139 +++ + G+P S+ V + + + + P IK GSS+ Sbjct: 126 KILETVGIPQVKSLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G + +++ + L +++ ++ + +E D + +P F Sbjct: 186 GCYRVDEEKELMPRLEEAAQYDRKIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHGVF 245 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y++E KY S +PA + I +E++ A +AI G+SR DF D + KV+ Sbjct: 246 YTFESKYEDEESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKVYL 305 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P++ A G ++ +L+ ++E A Sbjct: 306 NEINTMPGFTKISMYPQLMADFGITYSDLIDKLIELA 342 >gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 354 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S ++ + + I + +L Sbjct: 6 IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ D+ F VLHG GEDG VQ +LEL IPY Sbjct: 66 GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V S G+ + V R + ++ +S P +KP Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + L +++ H ++L+E+ + G E+ C V + Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V+ ++P ++V + A +A+ G+SR DF Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + EIN PG T +S++P + G S L+ ++ A Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348 >gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)] gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)] gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 389 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 23 VAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERR 82 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 83 TPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 142 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ DK K V +S G+ V P ++ Sbjct: 143 LLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIV 202 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 203 DFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEAR--RHDPKILVEAALRGREIE 260 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P Y ++ ++PA + + EVQRLA A Sbjct: 261 CGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIVPAPLTAEETAEVQRLAVAA 320 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V+ Sbjct: 321 FDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 379 Query: 295 DA 296 A Sbjct: 380 AA 381 >gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1] Length = 366 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + V+ GG SSE EVSL S K A++ F V + +D+ + Sbjct: 6 VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + R + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K + + + ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKNEAQYQQAVALAF--EFDHKVVVEQGIIGREIECAVLGNDEPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA I I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + V EIN PG T +S++P++ +G +R L+ +++ A Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLIDLA 350 >gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 788 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 141/322 (43%), Gaps = 32/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+E EVSL+S + +L+ ++ + + + VL + Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514 Query: 50 ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K DL F +LHG FGEDG +Q LE+L PY +SA+ MDK +K+++ Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574 Query: 104 GVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G+ I + ++ + P +KP+ GSS+G+ + + + + Sbjct: 575 GIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELDAAI 634 Query: 155 LQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + +L+E + G E ++ + Y KYS N+T Sbjct: 635 RNAF--AFDPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNAT 692 Query: 213 HVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 P + + E + A+QA C+G++R DF D S ++ EIN PG TP Sbjct: 693 PSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD-QSGSFWFNEINPIPGFTPF 751 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S++P+M G+S EL+ ++ Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773 >gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453] Length = 364 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S E EVSLS+ A +A + +++ + + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMIPFYISKQGTWRIGSKRSAPFSQLEDL 67 Query: 51 --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGQENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR + + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193 GSS+GI K + + + S+ D++++E++VD E+ V+G+ + Sbjct: 188 GSSVGISKAKNREQLKSAI--ESALRFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D+ ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIEPDVADRLRELAINAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347 >gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius] gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius] Length = 343 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG S E +VS+ S K A+ + ++ I + RS + Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 50 ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G++S + + Sbjct: 186 GADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA + + ++ A ++A+GCRG++R D + ++ Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG + EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLIVLA 340 >gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto Rico] Length = 333 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP++GGS++G+ I L + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Virginia] Length = 333 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D+++SVG +LA + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 73 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP++GGS++G+ I L + + D++++E+YV G E+ Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 190 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307 >gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC 2396] gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella chejuensis KCTC 2396] Length = 331 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 39/333 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDR 40 +AVL GG S ER+VS++S AL G +V +D + Sbjct: 3 IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62 Query: 41 SVGLVLAHLK---------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 V+A ++ D+ F LHG GEDG +QA+L+L + YT S + Sbjct: 63 PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA++MDK SKQ+ + GVP ++ + + + P V+KP K GS++G+ V++ Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + N+ D+++IE+++ G E T G++ +L V EI VP + Y K Sbjct: 183 EASELAKAIELAM--NYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVPNEI-FDYHAK 239 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y ++ + PA I +Q +A AH A+ SR DF + V+ LE N Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRV-EDNGAVWCLEGNSL 298 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 PGMT S+ P+ A AG F ELL + A Sbjct: 299 PGMTANSLLPQAARAAGIEFPELLERICRGAVT 331 >gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331] Length = 394 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 150/366 (40%), Gaps = 70/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A SAL+ + V I + R VL P Sbjct: 28 VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 88 VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 LEL +PY +G+L+SA+ DK K+V S G+PV P +V D Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP +GGSS+GI + + + ++ H + L+E + G E+ Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGITKVDDAAGLDEAIEEAR--RHDPKFLVESLLSGREIE 265 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ ++PA + + EVQRLA A Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSAAGLVPAPLTDEQTAEVQRLAVEA 325 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S+FP M +G + EL+ ++ Sbjct: 326 FEAASCEGLVRADFFLT-DDGSFVINEINTMPGFTPISMFPRMWQASGVEYPELVDRLI- 383 Query: 295 DASCLR 300 A+ R Sbjct: 384 TAALNR 389 >gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2] Length = 364 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I + + + + P +K Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K D + ++ ++++EQ + G E+ C V+G+ + Sbjct: 186 PANQGSSVG--VSKVTSEAQYDQAVALAFEFDHKVVVEQGIKGREIECAVLGNDHPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTAEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350 >gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 367 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 153/359 (42%), Gaps = 62/359 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + +AL+ F+V + + R VLA P Sbjct: 9 VAIVFGGRSPEHGISCVSAGSVLAALDPDEFEVVPVGITRQGQWVLASGDPSGLAIADRK 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITAGSGAELVLRADPAVGGLMVLDPAQGPVALADVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130 + +IPY + + ASA +MDK +K++ ++ G+PV P ++ + + + P + Sbjct: 129 MADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRAGMSLSDEDKERLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GV 181 KP + GSS GI + + L+ + ++L+E V G E+ C Sbjct: 189 KPSRAGSSFGITKVDDWADLDAALVTAREI--DSKVLVEGAVVGREIECGVLEGEAGGAP 246 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +V I + + ++ + +PA +P + ++V+ A A A+ C Sbjct: 247 EASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADLPEPVARQVRDYATRAFTALDCS 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DF P V+ EIN PG TP S+FP M + +G + +L+ ++ A R Sbjct: 307 GLARVDFFVTPQMD-VYLNEINTMPGFTPTSMFPRMWSASGLEYPKLVNRLIRTALHRR 364 >gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 364 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries] gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Florida] Length = 334 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D++R L + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP++GGS++G+ I L + + D++++E+YV G E+ Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 191 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 250 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 367 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V + + + + + ++L+E V G E+ C V+G+A + Sbjct: 186 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350 >gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Mississippi] Length = 334 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 5/298 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G+ + +D++R L + PDL +N LHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V +L++L + THS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P+VIKP++GGS++G+ I L + + D++++E+YV G E+ Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 191 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V ++ E+ + YSY+ KY H+ PA +P DIY A HQ +G Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCLG 250 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296 C+ +SR DF +D ++ + LEIN PGMT S PE + G +F ++ +V+DA Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308 >gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 380 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 19 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 79 RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 + SG+L SA++MDK +K+V+ G+ V P + NR T P +K Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + + ++L+E V G E+ C V+G+A+ + Sbjct: 199 PANQGSSVGVSQVRTAEQFAA--ALALALAYDHKVLVEAAVTGREIECAVLGNATPQASV 256 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + ++ V+PA I + +Q++A A+QA+ C G++R D Sbjct: 257 CGEVVVHDAFYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVDV 316 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 317 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 363 >gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14] Length = 370 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG SSE EVSL S K AL+ F+ + +D+ L Sbjct: 15 VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74 Query: 47 -------------------AHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77 A L+P D+ ++HG GEDG +Q +L + + Sbjct: 75 RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R + P +K Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K+ L + + ++L+E V G E+ C V+G+A + Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELAL--RYDHKVLVESAVVGREIECAVLGNAQPQASL 252 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N V+PA I +Q++A A+QA+ C G++R D Sbjct: 253 CGEVVVHDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVDV 312 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T +S++P++ +G + L+ ++E A Sbjct: 313 FLTA-DGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 359 >gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339 >gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans] Length = 343 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 139/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWENDNCC 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+VLHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ + N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G++S V + Sbjct: 186 GADELDAAIELAGQ--YDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA + + +Q A + A+GCRG++R D + ++ Sbjct: 244 HQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A G +F EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLA 340 >gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220] Length = 375 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + ++ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 17 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + + Sbjct: 77 HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L SA MDK +K+++ G+ + P I N + + + P +K Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDRPQAST 254 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA I +I +++ +A A+Q +GC G++R D Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 314 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 315 FLTAEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 361 >gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201] Length = 383 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG SSE +SL + ++ A++ + V + + L + Sbjct: 19 IAVVFGGRSSEHSISLITARSVLRAIDRDRWDVVSVGISTDGAWFLCSQEELEALLDDQP 78 Query: 51 ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71 D F +LHG FGEDG +Q + Sbjct: 79 MAQLPVGVHRVSLPLQTGDSRLLIHDTSEHGAPLSRGRHIDAVFPLLHGPFGEDGTLQGM 138 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------L 123 LEL ++PY G+ ASA+ MDK K + G+ V P +V+ T + Sbjct: 139 LELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVVHDRTWRTDPLGVREAVAE 198 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP + GSS GI + + + + + H +L++E +DG E+ C V+G Sbjct: 199 LGFPVFVKPARAGSSFGITRVDEPSQLDAAIATAR--EHDLKLVVEAGIDGREIECAVLG 256 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQ 236 D ++P Y PA++P + ++R A A Sbjct: 257 GHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCPARLPEHVIDTLRRDAVRAFH 316 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR DF +V EIN PG TP+S++P M A +G + L+ ++ A Sbjct: 317 AVDGEGLSRCDFFVTA-DERVLINEINTMPGFTPISMYPRMWAASGIDYSALIDELITLA 375 >gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379] gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 391 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 150/365 (41%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 25 VAVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRK 84 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 85 VPDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 144 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY +G+LASA+ DK K+V S G+PV P +V D Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIV 204 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P IKP +GGSS+GI + + + ++ H + L+E + G E+ Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDDLSGLDAAIEEAR--RHDPKFLVESLLRGREIE 262 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++T ++PA + + EVQRLA A Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSATGLVPAPLTGEQTAEVQRLAVAA 322 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 323 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQ 381 Query: 295 DASCL 299 A Sbjct: 382 AALTR 386 >gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51] gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 353 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 139/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E VS+ S A L+ ++ I + ++ L Sbjct: 6 IAIIFGGCSEEHPVSVKSAGEVAKNLDLDKYEPFYIGITKNGVWQLCRYPEANWENGICP 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + DL F VLHG FGEDG VQ +LEL IPY I Sbjct: 66 SVILSPDRSLQGLLVLEQGQYKTIPLDLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYIVAGNAGIATPKFRTVTAKEAIDAERLAYPVYVKPARSGSSFGVTKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + +S + ++LIE+ V G E+ C + G+ + + + Sbjct: 186 RQEELLSAVAIAS--QYDSKVLIEEAVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + ++PA I VQ A ++A+GC+G++R D +V Sbjct: 244 HQENEPEKGSENSTLIVPADISPQARSRVQETAKAIYRALGCKGLARVDMFL-KEDGEVI 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S FP M A AG F E++ +V A Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340 >gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 322 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 16/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 14 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L ++PY AS ++ DK +K V+ G+P + + Sbjct: 74 GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ S+P + + + L+E+YV Sbjct: 134 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAM--VGCFAYDSTALVERYV 191 Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+++ V+ A VP++ Y Y +Y++ +T PA++ ++ V R Sbjct: 192 PGMDVAVSVVDLGEGAQALPAVEIVPRNGVYDYAARYTAGRTTWHAPARLDPEVADAVAR 251 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R ISR D + D + LE+NV PGMT S+ P AG F LL Sbjct: 252 VAVAAHTALGLRDISRVDLIVDA-DGQPHVLEVNVSPGMTETSLLPLAVQAAGLDFGRLL 310 Query: 290 LWMVEDASCLR 300 +V A+ R Sbjct: 311 GSLVSRAAARR 321 >gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119] Length = 356 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 42/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E +VS+ + + +A+ + V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTVEEL 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 HLEDISPGEITLLLKENGEGSKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP+ GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 GI + + + ++ ++ + +E+ + F Sbjct: 186 GISKCNNEDELKKGIEEAFQFDRKLVIEQGIIAREVEVAVLGNDYPETTWPGEVIKDVQF 245 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY + +PA + ++ ++ +A A +A C G+ R+DF +++ Sbjct: 246 YDYKSKYKDGKISLQIPADLDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQIYI 304 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E N PG T S++P + G S+ +L+ +++ A Sbjct: 305 NETNAMPGFTAFSMYPNLWENMGLSYSDLITKLIDLA 341 >gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia intracellularis PHE/MN1-00] Length = 302 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 90/296 (30%), Positives = 156/296 (52%), Gaps = 6/296 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61 +L GG SSEREVSL S + SA+ + G V+ +D ++ K D+AF +LHG+ Sbjct: 5 LLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDKIVEVAEKQDVAFILLHGS 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120 GEDG++QA+LE + PY + S L++ K +K + G+ S+ + Sbjct: 65 PGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPEVTW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + ++ P +K GGSS+ + ++ + + + + N G+++L+E+ + G E+TCG Sbjct: 125 EPGLNYPIFVKSNIGGSSVNVHLVTNYEELFIAMEALF--NAGEEVLLEEAIIGQEVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+ D +L + + F+ Y KY+ + + PA + + K +Q A AH + Sbjct: 183 VIDDQALPPI-LIRSQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNTLNL 241 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G SR+DF+ +F LE+N PGM+ S+ P AA G +F EL+ +++ A Sbjct: 242 QGCSRADFIL-RDDELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296 >gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107] Length = 350 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 144/341 (42%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP ++ + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPS-----------ILVNRFTMDSQHLISPPYVIKPLKG 135 SA+SMDK+ K + G+ P I + + P +KP Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L ++ + + + +E V Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQLDPRLVVEQGVHARELECAVLGGHQLRSSVVGEVRF 247 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D Sbjct: 248 DADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDTKH 307 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 308 QLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247] Length = 358 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 154/338 (45%), Gaps = 45/338 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 VL GG+S+E +VS + +A + +++ I + + + Sbjct: 9 VVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTPLP 68 Query: 46 ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 A P + +LHG GEDG +Q +LEL ++PY +G+L+S Sbjct: 69 DALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVLSS 128 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLG 140 AL MDK +K V + G+P C + D + + P +KP GSS+G Sbjct: 129 ALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSSVG 188 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198 I + + + + + + +++E+ V G E+ V+GD + + + P S+ Sbjct: 189 ITKAHDEAELDTAINVAL--RYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEPGSE 246 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY YE KY + + V+PA + + +V+ LA A+ C G++R DF ++ R Sbjct: 247 FYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGRGWL 306 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S++P++ G S+ +L+ +V A Sbjct: 307 LNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344 >gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 367 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + +R T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V + + + + + ++L+E V G E+ C V+G+A + Sbjct: 186 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I + +Q++A A+QA+GC G++R D Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350 >gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 367 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAA--LALALDYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + ++ V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350 >gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032] Length = 388 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 167/360 (46%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + VL GG S+E EVS +S A AL G++V + V R L L Sbjct: 20 IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79 Query: 47 -------------------AHLKP------------------DLAFNVLHGNFGEDGLVQ 69 A +P D+ F VLHG +GEDG+VQ Sbjct: 80 AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123 +LE L +PY GILASA+ MDK+ K+ + + GVP+ P + + T + Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199 Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181 + P +KP + GSS+GI + +D + + ++ H + +++EQ V G EL CGV Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAVEEAL--RHDNLVVVEQGVTGRELECGVL 257 Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ Y+ KY V+PA +P ++ + ++ L+ A AIG Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DFL+D + +++ E+N PG T S++P++ A AG +++++ +V A R Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLVALAVERR 377 >gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60] Length = 367 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S K A++ + F V+ I +D+ L Sbjct: 6 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65 Query: 47 -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 A +P D+ F ++HG GEDG +Q +L++L + Sbjct: 66 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + N + + +K Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++++E+ V G E+ C ++G+ + + Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADAL--RFDHKVIVERGVVGREIECAILGNEAAQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +++ PA + + + V+ A A QA+ CRG++R D Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G ++ L+ ++E A Sbjct: 304 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 350 >gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202] Length = 390 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSL S K A++ + F V+ I +D+ L Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88 Query: 47 -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 A +P D+ F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + N + + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++++E+ V G E+ C ++G+ + + Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADAL--RFDHKVIVERGVVGREIECAILGNEAAQASV 266 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +++ PA + + + V+ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 326 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G ++ L+ ++E A Sbjct: 327 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 373 >gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2] gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2] Length = 362 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 147/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + ++ GG S E EVSL + A +A +++ + ++ Sbjct: 8 VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67 Query: 45 VLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L H + D+ F +LHG FGEDG +Q + E+ ++PY +G+L Sbjct: 68 KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136 ASA MDK K++ G+P N + + + P +KP G Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194 SS+GI + + + + ++++E+YVD E+ V+G+ + V Sbjct: 188 SSVGISKASNREELEKAVDLAL--QFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 SD+Y Y KY+ S ++PA + ++ ++ A A +A+ GISR+DF Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S++P + G S+ LL M+ A Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMIALA 347 >gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216] Length = 331 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSERE++L S ASAL+ A + ++ ID+ D Sbjct: 6 IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H D A ++HG GE+G +Q L+++ IPY+ + +S ++ DK+ +K+ V Sbjct: 66 SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+P+ R + I P +KP GSS G+ +K + I + + Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAVAE 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + D++LIE+ + G E+ CG+ G + V K +F+ YE KY++ S Sbjct: 186 AF--TESDEILIEECIQGREMGCGMLIAKGREYIFPITEIVSKKEFFDYEAKYTAGCSDE 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA I +I E+ RL LA++A CRG+ R DF+ P K + +EIN PGM+ SI Sbjct: 244 ITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTPE-GKPYLIEINSIPGMSGGSI 302 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG + EL ++ED Sbjct: 303 VPKQVREAGMTLGELYDLIIED 324 >gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185] gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185] Length = 312 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 + V+MGG SSE EVS +G A SALE G+ V +++D + + FN LH Sbjct: 6 IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELDPPHFAEAIRKSDCAIVFNALH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG++Q L++L IPYT SG+LA+A++MDK+ SK+V G+ S +RF D Sbjct: 66 GRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEFD 125 Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ S P VIK GSS+G+ + ++ L+ ++ + +++L+E+++ Sbjct: 126 AELPSRIRKAFSLPVVIKASSQGSSIGVAI--VEKEEELEAALKDAFRYDEEVLVEEFIR 183 Query: 174 GIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G ELT V +A S Y Y KY+ STH++PA+IPLD+ + VQ+L Sbjct: 184 GKELTVAVWGDAREAQAFPVIEITTVSGRYDYASKYTKGASTHIIPARIPLDVTERVQQL 243 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A +A GCRG++R+D + + +EIN PGMT S+ P+ G F EL Sbjct: 244 AVDAFRACGCRGVARADMML-GEDMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPELCE 302 Query: 291 WMVEDA 296 ++E A Sbjct: 303 RILEMA 308 >gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium] Length = 359 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 22 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 81 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 82 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 141 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 142 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 201 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ V Y Sbjct: 202 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 259 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 260 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 318 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + EL+ ++ A Sbjct: 319 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 356 >gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium] gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933] gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,502] gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA / D-alanine--D-alanine ligase [Enterococcus faecium] gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712] gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613] gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium] Length = 343 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ Y Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 356 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 42/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG S+E +VS+ + + +A+ + V I + Sbjct: 6 ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTIEEL 65 Query: 50 ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 K D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 HLEDISPGEITLLLKENGEGNKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 GI + + + ++ ++ + +E+ + F Sbjct: 186 GISKCNNEDELKKGIEEAFQFDRKLVIEQGVIAREVEVAVLGNDYPETTWPGEVIKDVQF 245 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY + +PA++ ++ ++ +A A +A C G+ R+DF +++ Sbjct: 246 YDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQIYI 304 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E N PG T S++P + G S+ +L+ +++ A Sbjct: 305 NETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341 >gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580] gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580] gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580] Length = 361 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 ++ GG S+E VSL + A AL+ F + I + V Sbjct: 6 GLVYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQ 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F +LHG GEDG +Q +LELL +PY + Sbjct: 66 FEQTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGN 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133 G+LAS+ MDK+ K + + G+ + + T + + P +KP Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191 GSS+GI + + + + + ++++E+ V G E+ + V Sbjct: 186 NLGSSVGISKCRSREELDQAFELAF--QYDRKIVVEEGVIGREIELGVLGNDEPVCSVAG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 PK DFY Y+ KY ++ ++PA + D Y+ ++ +A A QAI G+ R+DF Sbjct: 244 EIAPKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + +G + EL+ +V A Sbjct: 304 NE-GRVLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 347 >gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 366 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I N + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350 >gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 364 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium] gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium] gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium] gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium] gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis] gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis] gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein VanA; AltName: Full=D-alanine--D-lactate ligase; AltName: Full=VanA ligase gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium] gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium] gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium] gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA [Staphylococcus aureus] gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis] gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium] gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium] gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium] gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium] gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium] gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecalis HIP11704] gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus faecium 1,231,410] gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium] gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071] gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus faecium E1679] gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis] gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis] gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis] gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis] Length = 343 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S A+ + ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ LHG GEDG +Q + EL IP+ I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G+ ++N+ + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G+++ V Y Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + +PA + + +Q A ++A+GCRG++R D + ++ Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC 12472] gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472] Length = 366 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVSL S + A++ F+VS I VD+ + Sbjct: 6 VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+AF ++HG GEDG +Q +L + I Sbjct: 66 RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131 P+ +G+L SA+ MDK +K+++ G+ V P + + R L + P +K Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K++ + L ++ + ++L+EQ V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKREADLRAALDEAF--RYDHKVLVEQAVIGREIECAVLGNERPRASG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y LN PA IP + + ++ +A A QA+ C G++R D Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V E+N PG T +S++P++ AG S+REL+ ++E A Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIELA 350 >gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative [Synechococcus sp. PCC 7335] Length = 364 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 146/349 (41%), Gaps = 54/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S A A AL + V I + + VLA Sbjct: 8 VGLVFGGRSGEHEVSIRSAGAIAQALSIDENQTKYAVVPILIHKDGSWESGQTAQQVLAS 67 Query: 49 LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D+ F V+HG GEDG +Q + E+LE+P Sbjct: 68 GKPAMQDEGPIGELPSAAKPIKRLPDLSALGHIDIWFPVIHGPNGEDGTLQGLFEVLEVP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------P 126 Y G+L S+L MDK+ SK + G+P V+R + S I Sbjct: 128 YVGCGVLGSSLGMDKLASKSAFAQAGLPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGY 187 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI Q + L ++S++ + IE + + Sbjct: 188 PCFVKPANLGSSVGISKATNRQELETALDLAASYDRRVIVETGVVAREIECSILGNDNPK 247 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 V +DFY Y KY+ + ++P+ + + +Q +A A QAI G++R Sbjct: 248 ASVLGETRFSTDFYDYAAKYTEGGAELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLARV 307 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 DF + + ++ EIN PG T S++P M +G F +L+ +++ Sbjct: 308 DFFYIEKTDQILINEINTMPGFTATSMYPMMWEASGIKFSDLVDKLIQL 356 >gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000] Length = 385 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 151/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRTRYDVLPIGITQDGRWALTADEPERMAISDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDQLAESTEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYLVIRPREWERDESAARRKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + ++ + ++ H + L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSALDEAIAEAR--RHDPKFLVEAALRGREIE 256 Query: 179 CGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV+ EI P + Y ++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTDEETAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P+M G S+ EL+ +V Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQATGVSYPELVDLLVR 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B] Length = 304 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 153/302 (50%), Gaps = 8/302 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61 ++ GG SSEREVSLS AL G KV D+ G V A D AF LHG Sbjct: 5 LVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLNLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120 GEDGL QA+L+ +PY SG S L+++K SKQ+ G+ S Sbjct: 65 PGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPPGDGF 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 PP+ +KP GGSS+ + +++ +P L ++ GD L+E+ + G ELTC Sbjct: 125 VPDFGPPWFVKPTSGGSSVSMTLVRDPADLPEALARAF--ASGDTALVEEGLAGPELTCA 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V+GD +L I +F+ Y KY + + PA +P + E+ R++ AH+A+G Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISLAAHKALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298 G SR+DF+ LE+N PGMT S+ P+ A AG SF +L+ ++E A C Sbjct: 243 SGYSRADFIHTESG--PMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARLMELGLARC 300 Query: 299 LR 300 + Sbjct: 301 GK 302 >gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 367 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T + P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++ ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRTADQFAAA--LALALDYDHKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + ++ V+PA I + +Q +A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350 >gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris] Length = 357 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 45/338 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E VSL + KA AL+ F + I + + Sbjct: 6 CLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKELQ 65 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ F +LHG GEDG VQ +LELL +PY +G+LA Sbjct: 66 FNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGS 137 S+ MDK+ K + + G+P R T + I P +KP GS Sbjct: 126 SSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + ++ ++ + IE+ V VPK+ Sbjct: 186 SVGISKCSSRDELAKAFQEAFQFDRKIIIEEGVKAREIEIGVLGNDQPQCSVPGEIVPKT 245 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 DFY Y+ KY ++ ++PA++ D+ +++ +A + +A+ C G+ R+DF ++ Sbjct: 246 DFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTE-DGRI 304 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E+N PG TP S+FP + + G + L+ +V+ Sbjct: 305 YMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVDL 342 >gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 360 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 149/345 (43%), Gaps = 56/345 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------- 47 V+ GG S E EVSL S + AL+ +++ + + + Sbjct: 8 VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67 Query: 48 --------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 K DL F VLHG GEDG +Q + E+ +PY Sbjct: 68 HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132 SG+L AL MDK R K V + G+P+ P I V + +D+ +S P +KP Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVT 190 GSS+GI + ++ + L ++ + D+++IEQ V E+ V Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAA--AYDDKVVIEQGVKAREIELAVLGNETPQATVP 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +P +FY YE K +S ++PA++ ++Q A QA+ G+ R DF Sbjct: 246 GEIIPCKEFYDYEAK-YIDDSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDFFV 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + ++F EIN PG T +S++P++ G S+ ELL ++ Sbjct: 305 T-DTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELLNRLIRL 348 >gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4] Length = 351 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 156/345 (45%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+ER+VS +G A AL + G +V +D Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 38 --------VDRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAIL 72 + + V A K D+ F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + I P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W + L++E+YV G E + GV+ +L Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKAL-P 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 240 IIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 370 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 364 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 370 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 137/357 (38%), Gaps = 65/357 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 +L GG SSE VS + A++ F++ + + R G L P Sbjct: 10 LLFGGRSSEHSVSCVTAAGVMHAIDRERFEIVPVGITRDGGWTLLDEDPEGWALNTGKLP 69 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F +LHG FGEDG +Q +LE+ + Sbjct: 70 EISSVDHPVHLSTDAQKTSLLSYSDSAVADLGEIDVVFPLLHGPFGEDGSIQGMLEMAGV 129 Query: 78 PYTHSGILASALSMDKMRS--------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 Y SGI ASA+ MDK V + + + M + P Sbjct: 130 SYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVITNKQWLRDSEAAMKRCDNLQYPLF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS+GI + + + + +++IEQ + G E+ CGV+ Sbjct: 190 VKPARAGSSVGITKVDDPSELRAAIEIAR--AEDPKVIIEQGIVGREIECGVLEGRGSGP 247 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 + ++P + L PA + + E++ LA A AI Sbjct: 248 SRASLPGEIAVADNLHTFYDFEAKYVDGAAAELSCPANLSDEATLEIRELAVKAFDAIDA 307 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G+SR DF + P EIN PG TP S++P+M A G +REL+ ++ A+ Sbjct: 308 EGLSRVDFFYTPE-GDWIINEINTMPGFTPSSMYPQMWAKTGIEYRELIDELIALAT 363 >gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp. HGF5] Length = 364 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E EVSLS+ A +A + +++ + + + Sbjct: 8 VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMVPFYISKQGTWRIGSKMSAPFARQEEL 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG FGEDG +Q + E+ +IPY +G+ Sbjct: 68 KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+P C NR + + + P +KP Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLKNIEDKLGFPSFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193 GSS+GI K + + + + D++++E++VD E+ V+G+ + Sbjct: 188 GSSVGISKAKNREQLKAAIESAL--RFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V S++Y Y KY+ S +PA+I D ++ LA A +AI GI+R+DF Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E+N PG TP S++P + G S+RELL M+E Sbjct: 306 DNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347 >gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 361 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51 + GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 2 IFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALIS 61 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F ++HG GEDG +Q +L ++ IP+ Sbjct: 62 LNHSNKNVALIPGQQRQQLIAADNGSALAQLDVIFPIVHGTLGEDGSLQGLLRMVNIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLK 134 +G++ SA+SMDK +K+++ G+ V P I + P IKP Sbjct: 122 GAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + + + ++L+E + G EL C V+G+ + Sbjct: 182 QGSSVGVSKVRNEDEYHQAIALAF--DFDHKVLVESAIVGRELECAVLGNDDPQASVCGE 239 Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 Y + +N V+PA I ++ +A A +A+ C G++R D Sbjct: 240 VVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P +V E+N PG T +S++P++ G S+ +L+ ++E A Sbjct: 300 P-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIELALAR 346 >gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 153/298 (51%), Gaps = 6/298 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 + ++ GG S EREVSLS K +ALE+ G +V+ D + ++ + D AF LH Sbjct: 3 VILIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDGL+QA+L+ PY +G AS L++DK SK+V + G+ P + Sbjct: 63 GTPGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGA 122 Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L + P +KP KGGSSLG+ +++ P L + + L+E ++ G+ELT Sbjct: 123 DTPLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSALSKVFAMC--QSALVEIFIPGVELT 180 Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 C V+GD L + + F+ YE KY++ + V PA + + + VQ AH A Sbjct: 181 CAVLGDRPLPLIMITPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G G SR DF+ + LEIN PGMTP S+ P A G SF L+ ++ Sbjct: 241 LGLTGYSRGDFIL-AADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALISELIRL 297 >gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1] Length = 328 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRS--VGLVLAHLKPDLAF 55 +AVL GG+SSEREVSL SG+ AL ++ IDV S + L + + Sbjct: 20 IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---- 111 N+LHG GEDG VQ +LE L I YT IL SA+ M+K+ +K++ S V + Sbjct: 80 NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139 Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + S + P ++KP+ GSS+G+ +IK + + + Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVVSSIKD---SENYFL 196 Query: 169 EQYVDGIELTCGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 E Y+ G E+T G+ + + K++ Y YE KY+ + +PAK+ +I Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +V A++ +GC G+SR D + +V+ +E+N Q GMT S P MA + Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIV-GNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315 Query: 285 FRELLLWMV 293 F +L+L+++ Sbjct: 316 FNDLVLYIL 324 >gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 390 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 145/362 (40%), Gaps = 66/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + VL GG S E +S ++ AL+ + V + + + VLA PD Sbjct: 27 VMVLFGGRSGEHAISCATAGGVLRALDRDRYDVVAVGITPTGRWVLAEDDPDRWAIRDGR 86 Query: 53 --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74 + F +LHG FGEDG +Q +LEL Sbjct: 87 LPQVEDTAAHVLLPQATDDRDVQVLEPGTLPRTLGAVDVVFPLLHGPFGEDGTLQGMLEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------ILVNRFTMDSQHLISP 126 ++ Y +G+LASA+ MDK K V++ G+PV P + Sbjct: 147 ADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFTVILPGELERDPDEVARRVEKLGL 206 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSSLG + + D L ++ H ++++E V G E+ CGV+G Sbjct: 207 PLFVKPARAGSSLG--ITRVDDLADLPAALDAARAHDPKVVVEAAVVGREIECGVLGGRD 264 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 ++P + PA +P D+ +V+ +A +A Sbjct: 265 GQRARASLPGEIVVTDPRHTFYDFEAKYLDEAGVTLACPADLPADVVAQVRDVAVRTFEA 324 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 IGC GI+R D P +V EIN PG TP S++P M G + +L+ +V+ A Sbjct: 325 IGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWEATGLPYPQLVDELVQLAL 383 Query: 298 CL 299 Sbjct: 384 AR 385 >gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 370 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 12 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 72 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA++P + +++ +A A+Q +GC G++R D Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356 >gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0200_34B07] Length = 371 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 51/343 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 8 LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L + ++ F +LHG +GEDG +Q +LEL + Y +G Sbjct: 68 DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134 + ASA+ MDK+ ++ + ++ G+P ++ R + P +KP Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEI 192 GSS+GI + Q + L +S ++ ++ L G Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P +FY Y KY S V+PA + + VQ LA A +AI C G++R D Sbjct: 248 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFMC- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 V EIN PG TP+S++P++ A AG + +L+ +++ Sbjct: 307 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQL 349 >gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 364 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 364 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA++P + +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350 >gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium] Length = 342 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A + GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + + + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 E + S N+ +PA IP++ VQ A ++ +GCRG++R D + Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + ++ ++ A Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLA 339 >gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605] Length = 350 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45 + ++ GG S E +VS+ S L + V I +DR Sbjct: 8 VGLVFGGRSGEHDVSIRSAATVVRGLRSGENTERYTVQPIYIDRDGRWWGTDLAEATLTS 67 Query: 46 -----LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L +P DL + VLHG GEDG +Q + +L P+ +G+L Sbjct: 68 EVAPELTTPRPPSGFQGFPEGCDAIDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKG 135 SA+SMDK K SS G+ P + ++ + ++ P +KP Sbjct: 128 SAVSMDKQAMKSAFSSAGLSQVPYVALHASELEDAKSRSALLDRIERELNYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ Q + L Q+++ + + +E V Sbjct: 188 GSSVGISKVRSRQELEAGLEQAAALDPRLVVEQGVNAREVECAVLGRRTLEASVIGEVRF 247 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y YE KY++ ST ++PA +P + ++ A A A+G G+SR DF +D + Sbjct: 248 DADWYDYETKYTAGRSTTLIPAPLPDPVRDRIREQALQACAAVGVHGMSRVDFFYDETND 307 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S+FP + A +G + +L+ +++ A Sbjct: 308 QLWINEINTLPGFTAQSMFPMLWAASGVTLEQLVHKLIQTA 348 >gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg] Length = 340 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 162/340 (47%), Gaps = 51/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAHLKP 51 + VL GG+S EREVSLSSG A+AL + G++V +D+ S+ + P Sbjct: 3 VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D F LHG+ GE+G +QA+ ++ Sbjct: 63 YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPL 133 I YT SG + S L+MDK SK ++ G+ I+ + + + + P VIKPL Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQELEKTLMLPCVIKPL 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ +++ + + L + + +++LIE+ + G E + G++ +L + Sbjct: 183 SCGSSVGVSIVRSQEELGKALDYAK--KYENKVLIEELIVGREFSVGILNHHALPLI-EI 239 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +PK+ FY Y KY + +T V PA++ +I ++Q A H+ + SR DFL Sbjct: 240 IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLL-KE 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + LE N PGMTP S+ P+ AA G S+ +L ++ Sbjct: 299 DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis] Length = 349 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 43/338 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE EVSL S + L F++ +I +D L Sbjct: 7 IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + +PD+ F +LHG GEDG +Q + EL+ IPY G Sbjct: 67 TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 + SA+ MDK + S GV + + P +KP + GSS Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIRTRNCKDEIDKFIEKNDFPIFVKPNEAGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 GI + + + L ++ ++ + I + + SD Sbjct: 187 KGINKVNEPDKLEDALTEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVSLNSD 246 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ Y KY +++ +PA I ++ E+++ A L ++ +GC G++R DF + ++ Sbjct: 247 FFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLS-DNNEIL 305 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P+M G +++E++ ++ A Sbjct: 306 LNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLINLA 343 >gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1] Length = 372 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 141/356 (39%), Gaps = 65/356 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-------HLKP-- 51 + +L GG SSE +S ++ SA++ + V + + R L L P Sbjct: 15 VVLLFGGRSSEHSISCATAGGVLSAIDRDKYTVIPVGITRDGAFTLQPDDAEAFRLNPEA 74 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG VQ ++EL Sbjct: 75 MPEIVDNGTRVRWPETSNSRELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIEL 134 Query: 75 LEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDSQHLISP 126 +PY +G+LAS++ M+K +K V + + Sbjct: 135 TGLPYVGNGVLASSMGMNKHFTKLALEAAGVAVAPWVTISAVQWSRHPDVWRQRASSLGL 194 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+G+ + + L + L+EQ + G E+ CGV+ Sbjct: 195 PVFVKPARAGSSVGVTKVTHADELDAALATAF--AEDSTALVEQAMTGREIECGVLSGRD 252 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIG 239 T ++V + Y PA++ ++QR A A +AIG Sbjct: 253 GGDTRVSVAGEIVVTGRDFYDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIG 312 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G++R DF FD + EIN PG TP+S+FP+ A +G S+ EL+ ++E Sbjct: 313 GAGLARVDFFFDGA--EFVVNEINTLPGFTPISMFPKCWAASGMSYPELIDELIEL 366 >gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 356 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 150/349 (42%), Gaps = 56/349 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AVL GGISSE ++S S + L +++ + + R Sbjct: 4 AVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAWE 63 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + ++ D F VLHG GEDG +Q +LEL IPY Sbjct: 64 RMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----------PPYV 129 G+ ASA +MDK +K+V+ GV L R+ + P Sbjct: 124 VGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPVF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASL 187 +KP GSS+G+ + L ++ ++L+E+++DG E+ C V + Sbjct: 184 VKPCSQGSSVGVAKANNLLELAEGLTEALKL--DTKVLVEEFIDGHEVECAVLGNLEPQA 241 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 P +FY+++ KY +S +PA I + V++ A + A+GCRG+SR D Sbjct: 242 STVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRVD 301 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F S +V + E+N PG T +S++P++ Y G + ELL ++ A Sbjct: 302 FFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350 >gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3] gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3] Length = 364 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG SSE EVSL S K AL F+ + +D+ L+ Sbjct: 6 VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P+ S +L SA++MDK +K+++ G+ V P + + R + P +K Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ +K L + + ++L+E V G E+ C V+G+ + Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELAL--RYDHKVLVESAVVGREIECAVLGNTLPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N V+PA I D +Q++A A+QA+ C G++R D Sbjct: 244 CGEVVVHDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G + L+ ++E A Sbjct: 304 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 350 >gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084] Length = 330 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GG S ER++SL SG AC AL +AGF +V +D+ L + D+AF L Sbjct: 11 VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRFDVAFVAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG +GEDG +Q +LE+L IPYT SG+LASA+ +K +K + G+PV + + T Sbjct: 71 HGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEGTR 130 Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +KP GSS G+ + + + + +++ + GD++L+E Sbjct: 131 LTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAA--SEGDRVLVETC 188 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQR 229 V+G E+T V+G+ I D Y+ K + HV+PA++ Y+ Sbjct: 189 VEGTEITVPVIGNDDPVALPIVEIAFDSEFYDAKVKYEPAALHHVIPARLDQTTYERASE 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH+A+GCRG+SRSDF+ LE N PGMT S+ P+ A +AG F +L Sbjct: 249 LAVRAHRALGCRGVSRSDFIVTAE-GAPVILETNTIPGMTETSLLPDSARHAGIGFPDLC 307 Query: 290 LWMVEDA 296 VE A Sbjct: 308 RRFVELA 314 >gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 306 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 156/302 (51%), Gaps = 7/302 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGN 61 ++ GG S ER+VSL+ +A ALE G +V+ D+ + +LA + D A LHG Sbjct: 5 LIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120 GEDGLVQA+L+ + PY +G S L+++K +KQ+ G+P + D Sbjct: 65 PGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGKDW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P +K GGSSL + + + + + G+++++E + G E+TCG Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARNRAELDD--IMGQIFAAGEEVIMEPVLPGREVTCG 182 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++G+ L I DF++YE KY + + PA I ++ VQ L AH+A+G Sbjct: 183 ILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRALGL 242 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298 RG SR+DF+ P + LE+N PGMT S+ P A G F +LL ++E A C Sbjct: 243 RGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLMELGLADC 301 Query: 299 LR 300 + Sbjct: 302 KK 303 >gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84] Length = 355 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 153/345 (44%), Gaps = 53/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE +VSL S + A++ +++ I + R +L L+ Sbjct: 7 VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66 Query: 51 -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D+ F VLHG +GEDG +Q + ++ +P Sbjct: 67 AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGS 137 GIL SA ++DK +K+++ G+PV SI V ++ + P +KP++ GS Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFVKPVRQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVT 190 S+G+ + L+++ H D++LIE++V E+ C V+ Sbjct: 187 SVGVSKAANAEEFRAALIEAF--KHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGEI 244 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 S + + +PA++P D+ + ++ L+ A +A+GC G++R DF Sbjct: 245 VTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFFV 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 P + E+N PG T +S++P+ G S+ L+ ++E Sbjct: 305 RP-DMSMVVNEVNTMPGFTNISMYPKAMEATGISYPALVDRLIEH 348 >gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 369 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 150/350 (42%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S+E EVSL S AL+ F+ I +D+ Sbjct: 6 VGLIFGGKSAEHEVSLQSAGNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 46 ------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 LA + D+ F ++HG GEDG +Q +L + Sbjct: 66 RIALHRSGRGVALLPGAQQQQLRPIQPEQALALAQIDVVFPIVHGTLGEDGSLQGLLRMA 125 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYV 129 +P+ SG+L SA++MDK +K+V+ + V P + +R T + P Sbjct: 126 NLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+G V + + + + + ++L+E V G E+ C V+G+A Sbjct: 186 VKPANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHA 243 Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + Y ++ V+PA I + +Q++A A+QA+GC G++R Sbjct: 244 SVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 DVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 352 >gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong] Length = 291 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 164/293 (55%), Gaps = 5/293 (1%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGL 67 S+EREVSL S +AL G++V++IDV + + + L+ + P FN L G +GEDG Sbjct: 2 SAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDGC 61 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 + +L ++ IPYTHSG+ SA + DK +K ++ + SI +N I P Sbjct: 62 IPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILRP 121 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 YVIKPL+ GSS+G+ ++ + L + + G+++L+EQY+ G EL ++ + Sbjct: 122 YVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKVV 178 Query: 188 DVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + EI + FY Y+ KYS + H++P ++P++ ++ +A ++ CRG R Sbjct: 179 GILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCRL 238 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + + + +V+ +E+N PGMT +S +PE+A Y G SF EL+ ++ A C Sbjct: 239 ECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKCD 291 >gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis] Length = 349 Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 92/340 (27%), Positives = 147/340 (43%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAH--- 48 +AV+ GG S+E EVSL S A + F + I + RS +L + Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +K DL F VLHG GE+G +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + Q + + + + + + + + + + Sbjct: 186 RAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + P Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 S ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 >gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1] gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1] Length = 360 Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE E+S+ S KA ++ ++ + + + + R Sbjct: 6 VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 ++AF VLHG +GEDG +Q +LE+ Sbjct: 66 LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127 IPYT + +S+++MDK +K G+ V + V R + +PP Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 + +KP GSS+GI I + L ++ ++L+E+ ++G E+ V+G+ Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRL--DVKILVEKAIEGREVEVAVLGNEHP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + P DFY + KY ++ +PA++ D +Q A +A+GC G+SR Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + S ++ EIN PG T +S++P + +AG F EL+ +V A Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354 >gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis] gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis] Length = 349 Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAH--- 48 +AV+ GG S+E EVSL S A + F + I + RS +L + Sbjct: 6 IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 +K DL F VLHG GEDG +Q I EL IP Sbjct: 66 EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133 L+SAL MDK R+ ++VS G+ V S+ RF ++ ++ P IKP+ Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + Q + + + + + + + + + + Sbjct: 186 RAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + P Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 S ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344 >gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 289 Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125 L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR + + Sbjct: 62 LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + + L+++ H +LIE+++ G E T ++G+ Sbjct: 122 LPLIVKPSHEGSSVGMSKVDRASELHAALVEAF--RHDTDVLIEKWLSGPEFTVAILGED 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I P Y YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 288 >gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 367 Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 6 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 66 RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ G+ V P + NR T P +K Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+A+ + Sbjct: 186 PANQGSSVGVSQVRSADQFAAA--LALALAYDYKVLVEAAIAGREIECAVLGNATPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y + ++ V+PA I + +Q++A A+QA+ C G++R D Sbjct: 244 CGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLIARLIELA 350 >gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 375 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 68/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S ++ ++ F+ I + ++ VL Sbjct: 10 VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 70 GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ +PYT G+ AS+ MDK +K ++ G+PV +++ F + Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---------GDQLLIEQYVDGIE 176 P +KP + GSSLG+ + Q ++ + + G + + ++G Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFEAAVVAARRHDPKVIVEAAVQGAREIECAVLEGRA 249 Query: 177 LTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + Y + PA+IP + ++Q A A Sbjct: 250 GGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQI---PAQIPAGVAAQIQSYARQAF 306 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +G G+SR DF + P + ++ E+N PGMTP S++P M G S+ +L+ ++E Sbjct: 307 QILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIEL 366 Query: 296 ASCL 299 A Sbjct: 367 ALAH 370 >gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82] Length = 351 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+ER+VS +G A AL + G +V +D Sbjct: 3 IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62 Query: 38 --------VDRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAIL 72 + + V A K D+ F LHG GE+G +QA Sbjct: 63 VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +L I YT +G L+SAL+MDK SK++ S G+P + + + P V Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + L ++ W + L++E+YV G E + GV+ +L Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKAL-P 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P FY Y+ KY + ++ PA++ + +++Q A Q +G SR+DFL Sbjct: 240 IIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D ++ LE N PGMTP S+ P+ A G +F EL +++ Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343 >gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309] Length = 378 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 70/362 (19%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36 ++ GG SSE E+S S+ +A++ + V + Sbjct: 11 IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70 Query: 37 -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68 D D S V+ D+ F +LHG +GEDG + Sbjct: 71 CVTAGSTRVALTPGEGNLVELSYDGDPDASDSRVVGVEDLGHVDIVFPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120 Q + E+ + Y G+ +SA+SMDK +K V V MD Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGRWELVTARQWDTDATACMDR 190 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI + + +P+ + +++ NH ++++E G E+ CG Sbjct: 191 IEGLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASTSGREVECG 248 Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G S + EI +P+ +FY YE KY PA + + ++ A+ A Sbjct: 249 VLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDIVGLSCPADVAPEYADRIRATAWRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF FD + V E+N PG TP+S++P+M A +G S+ +LL ++ Sbjct: 309 FDALECEGLARVDFFFDEATDSVIINEVNTMPGFTPISMYPQMWAASGLSYSDLLNELLT 368 Query: 295 DA 296 +A Sbjct: 369 EA 370 >gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1] Length = 351 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++K L + W ++L+IE++V G E + GV+ +L Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 240 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct] Length = 347 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 37/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 +AVL GG S ER+VS +SG AL AG +V +D Sbjct: 8 VAVLFGGSSEERDVSTASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67 Query: 38 VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D ++ K D+ F LHG GEDG +QA+L+ YT SG LA Sbjct: 68 PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK +K++ + GV ++ + + + P V+KP GS++G+ ++ Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +GD++++E++V G E+T GV+ D +L V EI + + + YE KY Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + V PA +P I E QRLA H+A+ G SR+DF D +++ LE+N P Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 GMT S+ P+ AA AG F EL + Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330 >gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 375 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 68/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S ++ ++ F+ I + ++ VL Sbjct: 10 VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 70 GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ +PYT G+ AS+ MDK +K ++ G+PV +++ F + Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---------GDQLLIEQYVDGIE 176 P +KP + GSSLG+ + Q ++ + + G + + ++G Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFESAVVAARRHDPKVIVEAAVQGAREIECAVLEGRA 249 Query: 177 LTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + Y + PA+IP + ++Q A A Sbjct: 250 GGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQI---PAQIPAGVAAQIQSYARQAF 306 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +G G+SR DF + P + ++ E+N PGMTP S++P M G S+ +L+ ++E Sbjct: 307 QILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIEL 366 Query: 296 ASCL 299 A Sbjct: 367 ALAH 370 >gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541] Length = 367 Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 146/347 (42%), Gaps = 55/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E EVSL S K + L+ F V I +++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L KP D+ F ++HGN GEDG +Q +L + + Sbjct: 66 HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ + P I + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L + ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVNNESEFYAALDFAF--LFDVKVLIESAVKGREIECAVLGNEQPLASP 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V PA + + ++++++A A+QA+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + V EIN PG T +S++P++ G +++EL+ ++E Sbjct: 304 FLT-DTNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIEL 349 >gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1] Length = 359 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 152/341 (44%), Gaps = 46/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG S+E EVSLS+ +A AL ++V I + Sbjct: 5 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64 Query: 45 -------VLA-------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 +L +K D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 65 QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R ++ ++ P +KP Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + ++ + +EL + V P Sbjct: 185 GSSVGISKATDREQLVKAIEVALQYDRKIVVEQGIVAREVELAVLGNDYPEVSVPGEIKP 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +DFY Y+ KY ++ ++PA++P++ ++ LA A +AI G+ R+DF + Sbjct: 245 VTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADFFVTAENN 304 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 305 -VYINEVNTMPGFTPVSMYPLLWQHTNVSYPELIDRLITLA 344 >gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599] gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599] Length = 350 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHL------ 49 +A+L GG SSE EVSL S + +L ++V + + R + + + Sbjct: 6 VAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWH 65 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 K D+ F +LHG GEDG VQ +LEL IP+ Sbjct: 66 QSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLK 134 L+SA+ MDK + + G+ S+ V T + + P +KP K Sbjct: 126 VGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAATEPLGFPLYVKPAK 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI + + + H D+++IE+ + G E+ C V + + + Sbjct: 186 AGSSIGITKAYSLSELFFGIENAL--QHDDKVVIEENITGFEVGCAVLGNREVIVGEVDE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 F+ Y KYS + +PA+I ++ ++++ A +Q GCRG +R D P Sbjct: 244 IELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFARVDMFVTP 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T S +P M AG S++ELL ++ A Sbjct: 304 -DGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346 >gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102] gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102] Length = 353 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48 + V+ GG S E +VS+ S + A L ++V + +DR VL+ Sbjct: 8 VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67 Query: 49 LKP----------------------DLA---FNVLHGNFGEDGLVQAILELLEIPYTHSG 83 P D+ + VLHG GEDG +Q + EL++ PY +G Sbjct: 68 GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIKP 132 +L SA+SMDK K ++ G+ P + + + P IKP Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L +++ + + +E V Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATLDPRLVVEQGVQARELECAVLGGTTLRASVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y YE KY+ ST ++PA +P I + ++ + A A+G G++R DF +D Sbjct: 248 VRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFYDD 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V+ EIN PG T S++P + +G + +L+ ++E A Sbjct: 308 SRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351 >gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796] Length = 308 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFNVL 58 +L GG SSE+EVS+ S + +L + + V +D+ + + DL F VL Sbjct: 5 ILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDIATLSPYELCQKILCENFDLVFPVL 64 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q L+ L I Y SG+ + A++MDK R K + S P I + Sbjct: 65 HGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQPDFIAIRTKDS 124 Query: 119 D----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L P V+KP GSS+G+ ++ + + L + +L+E+++ G Sbjct: 125 TEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELKDALELGF--KYDPIVLVEEFIHG 182 Query: 175 IELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 E+TCGV+G++++ +PK+ F+ YE KY+ ++PA++ ++ +Q LA Sbjct: 183 KEITCGVIGNSNVIALPLVEILPKTKFFDYESKYNPQLCDEIVPARLNDNLKDRLQELAI 242 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A++A C+ R D D ++ EIN PG+T S+F + AGYSF+E++ + Sbjct: 243 KAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAAGYSFQEIVKLL 301 Query: 293 VEDA 296 V+ A Sbjct: 302 VKLA 305 >gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470] Length = 311 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 156/303 (51%), Gaps = 11/303 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59 +AVLMGG+S E ++S +G A AL G+ +++ + S V L + ++ F LH Sbjct: 8 VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAEVVFIALH 67 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V GV + S Sbjct: 68 GKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGI 127 Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P V+KP GS++G+ ++ + + + L + + ++L E Y+D Sbjct: 128 DTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIE--SRILAEAYLD 185 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E T V+ +L P S Y + KY+S + +++PA +P E+ R+A L Sbjct: 186 GKEFTIAVLNGKAL-PIIQICPHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMAIL 244 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A C G+ R DF D F LE N PGMT S+ P+ AA G F L ++ Sbjct: 245 GYEAAECSGVVRFDFRTDKR-GTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENIL 303 Query: 294 EDA 296 A Sbjct: 304 LKA 306 >gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672] Length = 385 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 151/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + + V I + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLKAIDRSQYDVLPIGITADGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 TPSVDQLAESTEGGVVLPVDPASREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY SG+LASA+ DK K+V +S G+ V P +++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQRDESAARKKIV 198 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSGLDGAIAEAQ--RHDPKILVEAALRGREIE 256 Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV G + EI P + Y ++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTEEETAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P+M G + EL+ +V+ Sbjct: 317 FEAASCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQATGIGYPELVDRLVQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198] Length = 366 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 +A++ GG S+E +VSL S K + L+ F + I ++ +L P Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 PY I++SA MDK +K+++ + + + + + + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + ++ L + + ++++E + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEEEFNAALEMAF--EYDLKVIVESAIVGREIECAVLGNEDPEVSP 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA + + ++++A A++ + C G++R D Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ AG ++ L+ ++E A Sbjct: 304 FLT-QDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIELA 350 >gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50] Length = 352 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 150/345 (43%), Gaps = 52/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 V+ GG SSE EVS S + A A++ + ++ I + + + Sbjct: 7 VVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYDS 66 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F VLHG +GEDG +Q + E+ +IPY G+ Sbjct: 67 QVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCGV 126 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGG 136 ASA +MDK +K + V + V + ++ P +KP G Sbjct: 127 FASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSAG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS G+ + L ++ NH ++L+E+ + G EL CGV+G + Sbjct: 187 SSKGVTKAHDRAELEAGLHEAL--NHDSKILVEETIIGRELECGVLGYGNHTKASGVGEI 244 Query: 195 ---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +DFY ++ KY++ +S ++ A IP + E++ A AI G++R DF + Sbjct: 245 LAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFLE 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +V + E+N PG T +S++P + GY + L+ ++E A Sbjct: 305 KDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIEMA 349 >gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 377 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 152/360 (42%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +S ++ A++ + V + + R V+A +P Sbjct: 13 VALLFGGRSGEHAISAATAAGVLRAIDRDVYDVVPVGITRDGRWVVAADEPERWEITDGR 72 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +LE Sbjct: 73 LPEVTSDDGAEVVLSLTAGERTLRVLEPGQVPGVLGEVDVVFPLLHGPFGEDGTLQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 L ++ Y +G+LASA+ MDK K V+ G+PV P ++ +++ + Sbjct: 133 LADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTVILPRDWETRREEATAAVARLG 192 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + +P + ++ H ++++EQ ++G E+ C V+G Sbjct: 193 LPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHDPKVIVEQGIEGREVECAVLGGR 250 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236 S ++P + PA +P + +V+ +A Sbjct: 251 SGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLRCPADLPDKVVAQVRSIAVRTFD 310 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+G G+SR D P +V EIN PG TP S++P M G ++ +L+ +++ A Sbjct: 311 AVGAEGLSRVDVFVTP-DERVIVNEINTMPGFTPFSMYPRMWEATGLTYPQLIDELIQLA 369 >gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653] gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653] Length = 390 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 150/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L P Sbjct: 24 VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADAPERMAIADRQ 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 LPSVERLAESEEGSVVLPVDPSSREVVYSEPGAVPKALGDVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVLRPRDWERDPAAARARIT 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + + ++ H ++++E + G E+ Sbjct: 204 DFAAEHGWPVFVKPSRAGSSIGITKVDGPEQLDEAIEEAR--RHDPKVIVEALLRGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + + V+PA + + + VQ LA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYIDAAPGVVPAPLTAEETERVQELAVRA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G+ R+DF S + EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 322 FDAVSCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 380 Query: 295 DA 296 A Sbjct: 381 AA 382 >gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54] Length = 322 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 156/304 (51%), Gaps = 11/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A++ GG S EREVSL+ L+ + VS+ D + + A D AF +LH Sbjct: 11 IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K+ + +PV + Sbjct: 71 GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130 Query: 120 SQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP GSS+GI + ++ + + + + G +++EQ++ G Sbjct: 131 YSEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAG-AIMVEQFIKGR 189 Query: 176 ELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELTC V+G+ L + K F+ YE KY S + PA I + ++VQ A Sbjct: 190 ELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQDHA 249 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AHQA+ RG SR+DF++ K++ LE N PGMT SI P+ AA G F LL Sbjct: 250 IRAHQALRLRGYSRTDFIY-GEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDT 308 Query: 292 MVED 295 ++E Sbjct: 309 LIEL 312 >gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 383 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 167/350 (47%), Gaps = 55/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 257 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 258 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + ++F LE N PGMTP S+ P+ AA G SF +L +++ + Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDISRKN 366 >gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis SK14] gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87] Length = 356 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 147/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ +++ I + Sbjct: 6 ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNNEEELKSGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ ++ A Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLINLA 341 >gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113] Length = 390 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 148/362 (40%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 24 VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADEPERMGIAGRE 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 LPSVERLAESGEGSVVLPVDPGNREVVYSEPGSVPKALGDVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ + Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWQQEPSAARRRIV 203 Query: 123 ----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI ++ + + ++ H ++++E + G E+ Sbjct: 204 EFAAEHGWPLFVKPARAGSSIGITKVEDPADLDEAIEEAR--RHDPKVIVEALLRGREIE 261 Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C + P S Y ++ ++PA + + + VQ LA A Sbjct: 262 CGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKYIDSAAGIVPAPLTEEQTRRVQELAVAA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF S + EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 322 FDAASCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLLQ 380 Query: 295 DA 296 A Sbjct: 381 AA 382 >gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis] Length = 349 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 140/340 (41%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S+E EVSL S A + F + I + R+ Sbjct: 6 IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65 Query: 46 ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78 K DL F VLHG GEDG +Q + EL IP Sbjct: 66 EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----SQHLISPPYVIKPL 133 L+SAL MDK ++ ++VS G+ V S+ + +S P +KP+ Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISVPKSVTFKFSGKKAALKKIEKELSYPLFVKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + K Q + + + + + + + + + + Sbjct: 186 RAGSSFGITKVTKQQELENAIQLAFEHDAEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 S F+ Y KY+ +S +PA+I + K +Q A ++A+GC G SR D + P Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMFYTP- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 S ++ + E+N PG T S +P M G SF ++L ++ Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQMLDKLI 344 >gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC 49176] Length = 353 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 51/344 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 AV++GG SSE EVSL SG++ ++ + V I + + +L Sbjct: 6 AVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKES 65 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L D F VLHG +GEDG +Q + EL IPY Sbjct: 66 KVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLK 134 G++ASA+ MDK +KQVV + G+ + V R + PY +KP Sbjct: 126 GVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS G+ + + LL ++ H ++L+E+ + G EL C V D Sbjct: 186 AGSSKGVSKAADREGLKKALLLAA--EHDRKILVEETIVGRELECAVLGGFDVKASGVGE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY ++ KY++ S VL ++P +E++ A +A+ G+SR DF + Sbjct: 244 ILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLEN 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ + EIN PG T +S++P + G + L+ ++ A Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALIDELINLA 347 >gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297] gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297] Length = 359 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 77/350 (22%), Positives = 151/350 (43%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 + ++ GG S+E +VSL S K+ A++ ++ I + +L Sbjct: 7 VGIVFGGRSAEHQVSLQSAKSIIDAIDRTRYEPVLIGITEQGQWLLNDATDFLLNATDPK 66 Query: 48 ------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + + D+ F VLHG +GEDG +Q + L + Sbjct: 67 TIELNRQGQPVTLAAGDQRGSVIPTTQSPINAQVDVLFPVLHGPYGEDGSIQGLARLANL 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131 P SGIL SA+ MDK +K+++ G+ V +V + + P +K Sbjct: 127 PCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYEVVRNGQLTEALIERIETRLQYPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + +++ + ++ ++L+E V G E+ C V+G+ + + + Sbjct: 187 PANMGSSIGVSKAENREALITAVADAA--RFDPKILVEALVVGREIECAVLGNDTPEASV 244 Query: 192 IA----VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 FY Y+ KY + +PA I + + ++ ++ + CRG++R Sbjct: 245 CGEIAANQTHAFYDYDAKYIDADGAVLSIPAAISDEASERIREISKQVFTTLECRGLTRV 304 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +V E+N PG T +S++P++ ++G + +L+ +++ A Sbjct: 305 DVFLTDA-GEVVINEVNTIPGFTKISMYPKLWEHSGLPYPKLIDRLIQLA 353 >gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 323 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 148/321 (46%), Gaps = 25/321 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-------PDL 53 +AV+ GG S E +VSL+SG+ A A + G V + ++ + D+ Sbjct: 3 VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFCDV 62 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 LHG GEDG++Q L+ L +PY SG+ ASA+ +DK +K V+ + G+PV P I + Sbjct: 63 VVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGITL 122 Query: 114 NRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + I P +KP GGSS G+ + + + ++ Sbjct: 123 RGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAAGL--DS 180 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAK 218 Q+L+EQ + G E+ VM + + P F+ KY+ + V+PA Sbjct: 181 QVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPAP 240 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++R A Q +GC G++R DF P + E+N PG TP S FP M Sbjct: 241 LDPALAASLRRTAVEVFQTLGCAGLARVDFFV-PADGQPVVNEVNTFPGFTPASQFPRMW 299 Query: 279 AYAGYSFRELLLWMVEDASCL 299 A AG S+ EL+ ++E A Sbjct: 300 AAAGMSYPELVHNLLETARAR 320 >gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6] gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6] Length = 382 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 96/359 (26%), Positives = 145/359 (40%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A+ + V I + +S VLA Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYDVIPIGIAKSGQWVLAGGDTAQWSLAGKA 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVAPSEQTVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 + Y +G+LASA+ MDK K V S G+ V P + V + Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVAVTDRQWQKDPEAVRKQVDRLGF 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + + ++ H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKVDSLEGLDAAIEEAR--RHDLKLVIEAGIVGREIECAVLEGRG 256 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 D ++P + + PA IP + V+ LA A A Sbjct: 257 TDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLSCPADIPDEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P + EIN PG TP S++P+M A +G + EL+ ++ A Sbjct: 317 VGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMYPQMWAKSGLGYAELIDELIHLA 374 >gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6] gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39] gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6] gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39] Length = 347 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 365 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 152/356 (42%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + + L+ F V + + VL P Sbjct: 8 VAVVFGGRSSEHTISCVSAGSVLAHLDRDRFDVVPVGITPDGAWVLGTDDPARLRIDGRT 67 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F VLHG FGEDG +Q + E+ Sbjct: 68 LPVVDGTGAALALPGDPTRGGLVRLDRDRAGEVFSGVDVVFPVLHGPFGEDGTIQGLFEM 127 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVI 130 +PY SG+LASA MDK +K+++++ G+ V +++ T Q + P + Sbjct: 128 AGLPYVGSGVLASAAGMDKEFTKKLLAAEGLAVGSLVVLRPGTQSLTAAQQERLGLPVFV 187 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---- 186 KP + GSS+GI + + + + H ++L+E + G E+ CGV+ Sbjct: 188 KPARAGSSVGITRVTSWDRLDEAVAAAR--VHDPKVLVEAAIVGREVECGVLEYPDGTVR 245 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + ++FY ++ KY +PAK+ D+ + V+ A A +A+ C+G+ Sbjct: 246 ASLPAEIRLVSGSAEFYDFDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF E+N PG TP+S++P M A G + LL +V+ A Sbjct: 306 ARVDFFV-GDDGAPVVNEVNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTALAR 360 >gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Lactobacillus sakei subsp. sakei 23K] Length = 350 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 156/342 (45%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S+ER VSL+SG AL+ G V+ +D Sbjct: 3 IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62 Query: 38 ----VDRSVG--LVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILE 73 +D V + L+ D+ F LHG GE+G VQA+L+ Sbjct: 63 KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + EIPYT S LA+ ++M K SK+++ +P + R + P V+KP Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G ++ + + + + ++ LIE+++ G E + GV+ + L EI Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDAL--RFDNEALIEEFIKGREFSLGVINEQPLPAIEIE 240 Query: 194 VPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V + + ++ + P +P D+++ ++++A A A+G +R DF + P Sbjct: 241 VNDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWSP 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++ +E N PGMTP+S+ P+ A G S+ +L +V Sbjct: 301 ETG-LYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIVN 341 >gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 377 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 161/360 (44%), Gaps = 63/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S + +AL AG+ V I + R VL P Sbjct: 17 VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+AF VLHG FGEDG +Q + E+ Sbjct: 77 LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 IPY SG+ ASA +MDK K + G+P P ++V + + Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP +GGSS+ + + K + + ++ ++L+E+ +DG E+ GV+ D Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADVDEAIERAREV--DPKVLVERAIDGREIEVGVLDDVH 254 Query: 187 LDVTEIAVPKSD------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 +++VP FY +E KY + +PA +P + + V R A +A++A+GC Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DF + +VF E+N PG TP S+FP + G + L+ ++V+ A R Sbjct: 315 EGLARVDFFVTA-TGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQLALRRR 373 >gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977] gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977] Length = 323 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 159/321 (49%), Gaps = 34/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 ++ GG S E EVSL S + AL F + + +L L Sbjct: 8 LVAGGRSGEHEVSLQSAQGVLEALP---FDADPAVIAKDGRWLLGRLALDAIEAGRAPRG 64 Query: 50 -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D+ F +LHG +GEDG +Q E+L +PY + + ASA+ MDK SK+ Sbjct: 65 DHPFPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLSKR 124 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +++ G+PV P ++ + + PP+ +KP + GSS+GI +++ + L ++ Sbjct: 125 ILAQAGLPVVPWEVLRKGEPVFVG-LEPPFFVKPARAGSSVGIAKVRRYAELRPALDEAF 183 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 H D+++IEQ V G+ E+ +A V +++FY Y KY++ + + Sbjct: 184 --RHDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAELDI 241 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ +A A++ +G RG++R DF S +++ E+N PG TP S++P Sbjct: 242 PAALDPGTQETVQEMAVRAYRVLGVRGMARVDFFL-AESGEIYLNELNTIPGFTPFSMYP 300 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ +G + ELL +VE A Sbjct: 301 KLWQASGLPYPELLTRLVELA 321 >gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 376 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 65/358 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS ++ + +A++ ++V I + R V++ P Sbjct: 14 VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LE+ Sbjct: 74 IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 ++ Y G+ +SA+ MDK K + + G+ V P ++ + + Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + + H ++++EQ +DG EL C V+ Sbjct: 194 PVFVKPARAGSSMGITRVDDLADLEQAVEAAR--EHDLKVVVEQGIDGRELECAVLDGHG 251 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL--------PAKIPLDIYKEVQRLAFLAHQAI 238 + + S + + ++ PA+ P + +E++RLA A A Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DF P ++ EIN PG TP S++P + A +G S+ EL+ ++ A Sbjct: 312 DCEGLARVDFFVTP-DERILINEINTMPGFTPYSMYPALWAASGISYPELIDELLTLA 368 >gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24] Length = 367 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 151/361 (41%), Gaps = 69/361 (19%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 AV+ GG SSE +S+ + A +A++ + V I + R L +P Sbjct: 2 AVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERRT 61 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ F VLHG +GEDG +Q + Sbjct: 62 PDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQGL 121 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------D 119 LEL +PY +G+LASA+ DK K V +S G+ V P ++ D Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIVD 181 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P +KP + GSS+GI + + + ++ H ++L+E + G E+ C Sbjct: 182 FAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEAR--RHDPKILVEAALRGREIEC 239 Query: 180 GV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 GV G + EI P Y ++ ++PA + + EVQRLA A Sbjct: 240 GVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIVPAPLTAEETAEVQRLAVAAF 299 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A C G+ R+DF + EIN PG TP+S++P+M +G S+ EL+ +V+ Sbjct: 300 DAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQA 358 Query: 296 A 296 A Sbjct: 359 A 359 >gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970] Length = 289 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG ID L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125 L +PYT SG++ASAL+MDK+R+K V + +P+ P + +NR + + Sbjct: 62 LGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + L+++ H +LIE+++ G E T G++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVEAF--RHDTDVLIEKWLSGPEFTVGILGDD 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I VP Y YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQVPGVF-YDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVARILTLA 288 >gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629] Length = 351 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 3 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 63 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ P V Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 240 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343 >gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656] Length = 369 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45 + VL GG+S+ER+VS +G A AL++ G KV +DV DR L Sbjct: 21 IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80 Query: 46 ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72 LA +K D+ F LHG GE+G +QA Sbjct: 81 VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129 +L + YT S L+SA++M+K SKQ + G+P I + R T ++ P V Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ L + W ++L+IE++V G E + GV+ +L Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 257 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 PK FY Y+ KY + ++ PA++P + K++Q A + IG SRSDFL Sbjct: 258 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++F LE N PGMTP S+ P+ AA G SF +L +++ Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361 >gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 366 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49 + ++ GG S E EVSL + A + A +++ +D+ L L Sbjct: 10 VGLIYGGKSGEHEVSLQTAFAVSKAFNFDKYELLPFYIDKQGKWKVGEKLHAPFAALEEL 69 Query: 50 K-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 K D+ F +LHG GEDG +Q + E+ ++PY +G+ Sbjct: 70 KLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLPYVGAGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135 LASA MDK+ K++ + G+ C + + + P +KP Sbjct: 130 LASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCFVKPANL 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193 GSS+GI + + + + + + ++++E++VD E+ GV+G+ + Sbjct: 190 GSSVGISKARNREELLSSVALAF--RYDLKVIVEEFVDAREVEVGVLGNDEPLASVPGEI 247 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V ++Y Y+ KY S ++PA I ++ + ++ LA A +AI G+ R+DF Sbjct: 248 VSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCRADFFVRKS 307 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG TP S++P + G ++ LL ++E A Sbjct: 308 DHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIELA 350 >gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1] Length = 288 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 9/294 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG S E+E++L KA +L+ G+ V +++D+ + L P+ F + HG Sbjct: 3 ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG VQ +L++L IPY S SA+ MDK SKQ+ + + Sbjct: 63 TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIKTPKWKAYKPKDVID 122 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P + KP GSS G+ ++ D+S+ D+L++E++++G ++T G Sbjct: 123 WSI--FPCIAKPASAGSSFGLFKVEDDKSLKEAAQNIFKI--DDKLIVEEFIEGKDMTVG 178 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 L+ EI Y+ + I K+++ +A Sbjct: 179 YFKGFILEPIEII---PKKGIYDFESKYTKGMSEYIFVEDESIAKKLKEIASKLVDIFEL 235 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + ++R DF V+ LEIN PG+T +S+ P AG SF +++ +V Sbjct: 236 KDMARIDFRVKGKD--VYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLVN 287 >gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From Xanthomonas Oryzae Pathovar Oryzae With Adp Length = 384 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 23 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 83 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + P +K Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V + + + + + ++L+E V G E+ C V+G+A + Sbjct: 203 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 260 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I + +Q++A A+QA+GC G++R D Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 321 FLCA-DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 367 >gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 386 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S + AL+ F+ I +D+ + Sbjct: 25 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG GEDG +Q +L + + Sbjct: 85 RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ SG+L SA++MDK +K+V+ + V P + +R T + P +K Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V + + + + + ++L+E V G E+ C V+G+A + Sbjct: 205 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 262 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V+PA I + +Q++A A+QA+GC G++R D Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 323 FLCA-DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 369 >gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis M23864:W1] Length = 361 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS+ + + +A+ +++ I + Sbjct: 11 ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNEGEWKKKENITEEIKNTDEL 70 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 71 VLNDVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + ++ P +KP GSS+ Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 191 GISKCNNEKELKSGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA++ D+ ++ +A A +A C G+ R+DF ++ Sbjct: 249 AFYDYKSKYKDGKVRLQIPAELDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E N PG T S++P + G S+ +L+ +++ A Sbjct: 308 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLIDLA 346 >gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759] Length = 350 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 V+ GG SSE EVS S + A A++ + ++ + + + + Sbjct: 7 VVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRDG 66 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+ F VLHG +GEDG +Q + E+ +IPY G+ Sbjct: 67 KVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCGV 126 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGG 136 LASA SMDK +K +V + GV + V + + + P +KP K G Sbjct: 127 LASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKAG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIA 193 SS G+ QS+ L ++ +++L+E+ + G EL CG + Sbjct: 187 SSKGVNKAVDRQSLKSALEEAV--KFDNKILVEETIVGRELECGVLGYKDNTQASGVGEI 244 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + ++FY ++ KY++ S V+ A IP +I E++ A +A+ G+SR DF + Sbjct: 245 LAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLEKG 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + KV + EIN PG T +S++P + GY +L+ ++E A Sbjct: 305 TNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIEMA 347 >gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)] Length = 384 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 149/346 (43%), Gaps = 51/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+++GG S E VS++SG + + ++ F V I +D Sbjct: 14 VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 L + D+ F+++HG+ GEDG +Q + E+ +PY Sbjct: 74 ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKP 132 + + SA+ M+K+ K ++++ +P +V+ + + P +KP Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190 GSS+GI + + + + ++ L+ E EL V + + Sbjct: 194 ANTGSSVGISKVDSYDDLQSAIEVALKFDP-QVLVEEGITPARELEVAVLGNHNPEVSCI 252 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 P FY Y KY + + PA + ++ +++ +A ++ +G +G+SR DFL Sbjct: 253 GEINPPDGFYDYASKYLNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLSRVDFLL 312 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + + + +E+N PG T +S++P++ +G + L+ ++E A Sbjct: 313 DQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIELA 358 >gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 353 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 152/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG SSE VS S + A+ + + + V + + V Sbjct: 6 IVVLFGGQSSEHVVSCMSVQNVAANINEEKYNVILVGITEDGHWVKVDSLSQVKDDTWRE 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG VQ ILEL +IPY Sbjct: 66 SKAGAVLSPDAKEKCLIVTENGSFEKIPVDVVFPVLHGLYGEDGTVQGILELAKIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K++VS G+ + V + + I P +KP Sbjct: 126 GVLASAVSMDKLSTKRMVSGLGICQAAYVSVMKAELKDMDAVISKIEKEIPYPVFVKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191 GSS G+ + + L +++ ++ ++L+E+ + G E+ CGV GD Sbjct: 186 AGSSRGVTRADNREELITGLKEAA--DNDRRILVEEMIVGREIECGVFGDGDSTKASGVG 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY + S V+ ++P + V+ A A+ G+SR DF Sbjct: 244 EILAAAEFYDFDAKYYNAESKTVVDPELPDGATERVREAAVKIFNAVDGYGLSRVDFFV- 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + G R+L+ +++ A Sbjct: 303 KADGTVVFNEINTLPGFTAISMYPMLWEARGVDKRQLIDDLIDHA 347 >gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] Length = 367 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 149/364 (40%), Gaps = 69/364 (18%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 2 AVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRKV 61 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ F VLHG +GEDG +Q + Sbjct: 62 PDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQGL 121 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------ 119 LEL +PY +G+LASA+ DK K+V S G+PV P +V D Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIVD 181 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P IKP +GGSS+GI + + + ++ H + L+E + G E+ C Sbjct: 182 FAGEHGWPLFIKPARGGSSMGITKVDDLSGLDAAIEEAR--RHDPKFLVESLLRGREIEC 239 Query: 180 GV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 GV D +P + + ++T ++PA + + EVQRLA A Sbjct: 240 GVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSATGLVPAPLTGEQTAEVQRLAVAAF 299 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C G+ R+DF EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 300 DAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQA 358 Query: 296 ASCL 299 A Sbjct: 359 ALTR 362 >gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 382 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 160/345 (46%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKPDL--- 53 + VL GG S+ER+VSL +G +L G + + +D+ D S K DL Sbjct: 42 IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101 Query: 54 ---------------------------------------AFNVLHGNFGEDGLVQAILEL 74 F LHG+ GEDG VQA +L Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L I YT + L+SA+SM K +K+V+ G+P+ + +++ + P V+KP Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGHKIEY--VPFPCVVKPCC 219 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ + ++ L ++ ++ D +L+E++VDG E + V+ +L V Sbjct: 220 GGSSVGVSIAHNEKEFEDALDEAF--SYEDTVLVEEFVDGREFSVAVLDGKALPVI-EIE 276 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P FY Y+ KY + ++ PA IP DI ++Q A QA G +R D L D + Sbjct: 277 PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLD-KN 335 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +F LEIN PGMT S+ P+ AA G S+ EL ++E + Sbjct: 336 NNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEISLAK 380 >gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 366 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDSASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG++ SA+SMDK +K+++ G+ + P I N + P IK Sbjct: 126 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTA-DNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350 >gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896] Length = 353 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 159/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A+L GG S E EVS S K ++ ++ I +D+ Sbjct: 6 IAILFGGKSEEHEVSCRSAKYIFENVDRDKYRPFLIGIDKLGNYYYMKECNIEHLIDCTW 65 Query: 41 ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++ L + D+ F LHG GEDG +Q ++E + IPY Sbjct: 66 TDFIETNEVCFSKGDERFTLQLQGEKIVFDVVFPALHGPNGEDGKLQGLMEFVNIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----LISPPYVIKPLKGGS 137 ++SA+ MDK +K++V GV P +++ + + I P +KP GS Sbjct: 126 NSISSAICMDKEITKRLVGIEGVRQVPYVILYEGVVAEEKLLEMEEIGYPLFVKPANMGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAV 194 S+G+ + Q + + +S + D++++E+ +D +EL DA Sbjct: 186 SVGVSKAENQQELLQAIRVAS--KYDDKVIVEKGIDALELEIAALGDGKDAYFSTVGCIK 243 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY Y+ KY + ++ +PA I + E++ +A A+ A+ C G+SR DF D + Sbjct: 244 PRDIFYDYDSKYLTNDADFYIPAPISFEKETELREMARKAYTAMLCEGLSRIDFFMDKET 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++++ EIN PG T +S++P++ Y G +EL+ +++ A Sbjct: 304 QEIYFNEINTMPGFTAISLYPQLMDYDGVGAKELIGRLIDYA 345 >gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146] gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 390 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + ++ GG S E EVSL S K A++ + F V+ I +D+ L + Sbjct: 29 VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L++L + Sbjct: 89 HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S ++ SA MDK K+++ G+P+ P + + + + +K Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + ++++E+ V G E+ C ++G+ + Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADAL--RFDHKVIVERGVIGHEIECAILGNEVAQASV 266 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +++ PA + ++ + V++ A A QA+ CRG++R D Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVDV 326 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ +G S++ L+ ++E A Sbjct: 327 FVTAE-NEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIELA 373 >gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 320 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 146/313 (46%), Gaps = 16/313 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG+ AL G + D D ++ LA PD LHG Sbjct: 11 VVVLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 GEDG ++ +L+L +PY AS L+ DK +K V+ G+ + + Sbjct: 71 ATGEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSE 130 Query: 119 --------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS LG V++ ++P + + + L+E+ Sbjct: 131 LGAVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAAALPAAM--VGCFAYDPTALVER 188 Query: 171 YVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 YV G+++ V+ VP++ Y Y +Y++ +T PA++ + ++V Sbjct: 189 YVSGMDVAVSVIDLGDGPQALPPVEIVPRNGVYDYAARYTAGRTTWHTPARLEPAVAEKV 248 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F Sbjct: 249 GEVALAAHTALGLRDLSRVDLIVDSA-GLPHVLEVNVSPGMTETSLLPLAVQAAGLDFGR 307 Query: 288 LLLWMVEDASCLR 300 ++ +V A R Sbjct: 308 VIGSLVARAVTRR 320 >gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus'] Length = 349 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 155/340 (45%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S+E EVS+ S ++ + L+ + + + I + ++ Sbjct: 8 IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 DLAF VLHG +GEDG +Q E+L+IPY + +SA+ Sbjct: 68 IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----------PYVIKPLKGGSSL 139 SMDK K++ + +P ++ + + P+ +KP GSS+ Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPK 196 GI + + ++ + + H ++++IE +V E+ ++ + + + Sbjct: 188 GITKVNEKKNFAEAINSAF--EHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEIIAQ 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 DFY Y+ KY + V+PA+I I KE++ LA A A+G ++R DF + Sbjct: 246 HDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NND 304 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S++P + +G+ +++LL M+E A Sbjct: 305 LLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344 >gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 355 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 56/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S+E VS S A L+ F+V I + R + Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + EL IPY Sbjct: 67 EVKHGTELALSADPTRKGEIRTISDGSLYAHVDVIFPILHGPYGEDGTMQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGG 136 G+LAS++ MDK +K+++S+ G+PV P ++V T + + P KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + P + + D++L+E + G E+ GV+ + Sbjct: 187 SSIGVSKVSDWADFPEAVRIALED--DDKILVEPEIVGREVEVGVLQYPDGRLIASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY +E KY T +PA P ++ +++ +A A +A+ C G+SR DF Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASA 350 >gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM 44385] gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 412 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 61/353 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S A S L+ ++V I + R V+ P Sbjct: 57 VAVVYGGRSSEHSISCVSAGAVISHLDPDRYQVVPIGITRDGRWVVGSSDPKELSIRERQ 116 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F VLHG FGEDG VQ + ++ Sbjct: 117 LPEVKAGTSLSLSLDPQHAGRFVYADGPDVGQVFADVDVIFPVLHGGFGEDGTVQGLFDM 176 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIK 131 +PY +G+LASA SMDK +K++ ++ G+P+ + T + ++L+ P +K Sbjct: 177 ASVPYVGAGVLASAASMDKEFTKKLAAAEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVK 236 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------ 185 P +GGSS+GI + + + L + H ++++E + G E+ CGV+ Sbjct: 237 PARGGSSIGISKVDQWDELDDALDLAR--QHDSKVIVESMIVGTEVECGVLQRPDGTVEA 294 Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + FY ++ KY T +P D + ++ LA A+ C G+ Sbjct: 295 SLPAQLEDTESGDEGFYGFDTKYLDNVITAQIPPHFDDDTIRHIRELAVETFHALDCEGL 354 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF R EIN PG TP+S++P+M G + +LL +++ A Sbjct: 355 ARIDFFVT--DRGPVLNEINTMPGFTPISMYPQMFGAMGIDYPDLLDLLIQRA 405 >gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552] Length = 346 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 43/337 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAH------------- 48 VL GG SSE VS S + + L + ++ + +D L H Sbjct: 7 VLCGGQSSEHIVSRMSCTSVLNNLNHDKYDITLVGIDLDGKWYRLNHDQDDLSLDSWLDN 66 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + D+AF VLHG +GEDG +Q + EL +IPY + +L S++SMDK+ +K Sbjct: 67 SVEVENVFELLKEHDVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDKIYTK 126 Query: 98 QVVSSCGVPV------------------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 +++ + +P + + I P IK + GSSL Sbjct: 127 KILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRSGSSL 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G + + L ++ ++ + +E D + +P +F Sbjct: 187 GCYRCDNREDLIGKLEAAAKYDRHIVVEENIDCIELETAVLGNDDVIVSRVGQIMPHGEF 246 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y++E KY S +PA + I ++++ A A +A+ G+SR DF D + ++ Sbjct: 247 YTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKKTNNIYL 306 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P++ G S+ +LL ++E A Sbjct: 307 NEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIELA 343 >gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 355 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 144/343 (41%), Gaps = 53/343 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------ 45 + GG S+E VSL + A AL+ F + I + V Sbjct: 2 VYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQFE 61 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG +Q +LELL +PY +G+ Sbjct: 62 QTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGV 121 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LAS+ MDK+ K + + G+ + + T + + P +KP Sbjct: 122 LASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIA 193 GSS+GI + + + + + ++++E+ V G E+ + V Sbjct: 182 GSSVGISKCRSREELDQAFELAF--QYDRKIVVEEGVIGREIELGVLGNDEPVCSVAGEI 239 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 PK DFY Y+ KY ++ ++PA + D Y+ ++ +A A QAI G+ R+DF Sbjct: 240 APKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLTNE 299 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG TP S+FP + +G + EL+ +V A Sbjct: 300 -GRVLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 341 >gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12] gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12] Length = 288 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGGISSE+E+S+ SG+A +L+ G+ + ++ +++ + DLA+ LH Sbjct: 3 IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT S + A A+SM+K + + + I + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSQVTACAISMNK------LLTKKIASFEGIRMAKTYAN 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P ++KP + GSS+GI V + + L + +IE+Y+ G ELT Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEI-----SGYAMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I ++ Y YE KY+ S H PA+I Y+E A H+A+G Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VE+A Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEA 286 >gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24] gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24] Length = 382 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 88/359 (24%), Positives = 140/359 (38%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG SSE VS + A++ + V I + ++ VL Sbjct: 19 VAVLFGGRSSEHAVSCVTAAGVLGAIDYDKYDVIPIGIAKTGQWVLVSGDTRQWSLSASS 78 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 79 LPEVSPSARTVTLAEIGGEHQLIVASPNEVPQELGAVDVVFPLLHGPFGEDGTIQGLLEL 138 Query: 75 LEIPYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISP 126 + Y +G+LASA+ MDK K V V + + Sbjct: 139 SDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYIAVTDRQWLTDPEAIRKRVDRLGY 198 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSS+GI + + + + + H +L+IE + G E+ C V+ Sbjct: 199 PVFVKPARAGSSMGISKVDSLEGLDAAIAAAR--EHDLKLVIEAGIVGREIECAVLEGRG 256 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 + ++P + + PA +P + V+ LA A A Sbjct: 257 TEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDAASLSCPADLPDEAIARVRELAAAAFDA 316 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G+SR DF + P ++ EIN PG TP S++P+M A +G + EL+ ++ A Sbjct: 317 VGAEGLSRVDFFYTP-DGELIINEINTMPGFTPKSMYPQMWAASGLGYAELIDELIYLA 374 >gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579] Length = 301 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 84/297 (28%), Positives = 150/297 (50%), Gaps = 9/297 (3%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66 G +SE++VS+ +G + L+ +++ I ++ + L+ D A LHG +GEDG Sbjct: 6 GYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDG 65 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHL 123 VQ LE L IPY+ S +L+S++ MDK SK+++ GV I + +D Sbjct: 66 TVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLDELDK 125 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+TC ++ Sbjct: 126 LGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEITCSILD 183 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 ++F+ Y KY ++ + ++P I + V + + ++A+ C Sbjct: 184 G-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKALKCSVY 241 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R D + + +EIN PGMT S+ P+ A AG S+ +LL ++E + +R Sbjct: 242 ARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSLKVR 296 >gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13] Length = 356 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 48/339 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+E +VSL + A A++ F+V + + + Sbjct: 7 LLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQLKL 66 Query: 46 ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F +LHG GEDG VQ +LELL +PY +G+LAS+ Sbjct: 67 EEGGTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASSA 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLG 140 MDK+ K + G+P R + + P +KP GSS+G Sbjct: 127 GMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKS 197 I K + + ++ ++ ++++EQ ++G IE+ + V PK+ Sbjct: 187 ISKAKNREELETAFREAF--DYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIAPKT 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY Y+ KY ++ ++PA+I DIY++V+ +A A +AI G+ R+DF K+ Sbjct: 245 EFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADFFLTKE-GKL 303 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG TP S+FP + + S+ +L+ +V A Sbjct: 304 YINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLVGYA 342 >gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 366 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I N + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C VMG+ + + Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N ++PA I + ++ +A A +A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P +V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIELA 350 >gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6] gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6] Length = 347 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + V + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335 >gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 363 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + + P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P D+ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAGALALGFEFDHKLLIEQGIVGREVECAVLGNFEPQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA +P+D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 TEA-RQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae 642] Length = 363 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLIVLA 347 >gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601] gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601] Length = 271 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 121/276 (43%), Positives = 175/276 (63%), Gaps = 8/276 (2%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 G++V+++D R + L L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LA Sbjct: 2 RAEGYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK RSK+V + G+PV S+L ++ + ++H+++PPYV+KP GSS+G+ ++++ Sbjct: 62 SAVAMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQE 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + P + + D L++E Y G ELT VMGD +L VT+I +Y Y+ KY Sbjct: 122 GANTPPRIAEDMP----DTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKY 175 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S H LPA +P +I+ A AH+A+GCRG+SR+DF +D + LE N Sbjct: 176 KEGGSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDESRGLDGLILLETNT 235 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE A + G SF L+ WMVEDASC R Sbjct: 236 QPGMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271 >gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 355 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 141/343 (41%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E +VS+SS K +A + F V +++ + Sbjct: 9 IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG + +L+ P Sbjct: 69 EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIK 131 GIL SAL MDK+ K + S+ +P +++ +++ ++ P +K Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + ++ L ++ + + IE + Sbjct: 189 PSNSGSSLGISKVINKSALLKALEKAWEIDARILVEEGLETREIECGIIGNSELLTSEIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 SD+Y Y+ K + N+ +PAKI I K+++ +A + + + G +R DF + Sbjct: 249 EVEYGSDWYDYDSK-YNSNNKITIPAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S K+F EIN PG T S+FP + +G + +L+ +V+ Sbjct: 308 KSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350 >gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261] Length = 347 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 372 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 30 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 90 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 150 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 210 ENHEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 360 >gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 158/345 (45%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VS SG A AL G +V +DV Sbjct: 20 IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79 Query: 39 ---------DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72 + + A K D+ F LHG GE+G VQA Sbjct: 80 VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +L I YT + L A++MDK +K ++ G+P I + + I P V Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ +++ + L ++ W D+++IE+Y+ G E + GVM D L V Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 P FY ++ KY++ ++ PA +P + + +Q+ A +A+G SR DFL Sbjct: 258 I-EIAPIRGFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D S ++F LE N PGMTP S+ P+ A G S+ +L ++ Sbjct: 317 LDE-SGRIFCLEANTLPGMTPTSLLPQEEAVLGMSYDDLCEEIIR 360 >gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A From Salmonella Enterica Typhimurium Complexed With Adp Length = 367 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 9 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q L + + Sbjct: 69 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA DK +K+++ G+ + P I + + + P +K Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 246 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G +R D Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVDV 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S +P++ +G + +L+ ++E A Sbjct: 307 FLTA-DNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIELA 353 >gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 345 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 53/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA+ MDK +K+++ G+ V P +++R ++ + P IKP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQLGLPMFIKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNVDVQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R + E+N PG T +S++P++ +G S+ EL+ +++ Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345 >gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 358 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 157/339 (46%), Gaps = 50/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLV------------ 45 + VL GG S EREVSLSSG A+AL + G +V +D R V Sbjct: 20 IIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFS 79 Query: 46 ---------LAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLE 76 L L+ D+ F LHG GEDG +QA+LE Sbjct: 80 SEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYG 139 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IP+T S L+MDK SK + GV L + + P V+KPL G Sbjct: 140 IPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCG 197 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ ++++++ L + +HG ++L+E+ + G E + GV+GD +L +P+ Sbjct: 198 SSVGVTIVEREEEWSAALEAAF--SHGGRVLVEKKITGREFSVGVLGDRALPAI-EIIPE 254 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 S FY Y+ KY + + PA I +++ A H+ + SR DF+ D Sbjct: 255 SGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++ LE N PGMTP+S+ P+ A AG ++ EL +V + Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNN 352 >gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec] gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 367 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 60/352 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +S S AL+ + + V + +D Sbjct: 11 VLLFGGRSTEHSISCVSAGGVLRALDRSRYDVIPVGIDTEGRWAVLPDDSPALAPVGTDL 70 Query: 46 ------------------------------LAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74 L L P D+ F +LHG FGEDG +Q +LE+ Sbjct: 71 PIVDASAGLAVTLPPSPSAAPVVVHDPSAALRDLGPVDVVFPLLHGPFGEDGTIQGLLEM 130 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131 +PY SG+ ASA +MDK K ++++ G+PV P ++ + + P +K Sbjct: 131 AGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYAVLRPGQALSEPDRERLGLPVFVK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + L + + L+E V G E+ CGV+ + Sbjct: 191 PARGGSSIGISRVDAWADLDTALKTAR--ASDPKTLVEAAVVGREIECGVLDSLDGSGPQ 248 Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +VP FY +E KY S + +PA++P ++ + V+ A A +A+ C G++ Sbjct: 249 ASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPGELTERVRAAAVAAFEALDCAGLA 308 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D P S ++ E+N PG TP+S++P M A +G + L+ +V+ A Sbjct: 309 RVDMFVTP-SGEIVLNEVNTMPGFTPMSMYPRMWAASGIDYAALVDRLVQLA 359 >gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829] gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 317 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 147/305 (48%), Gaps = 10/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDR-SVGLVLAHLKPDLAFNVL 58 +AVL GG S E ++SL SG C AL+ AGF V DV S LA + D+AF + Sbjct: 11 IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117 HG +GEDG +Q +LE+L IPYT SG+LASA+ K +K + G+P + Sbjct: 71 HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130 Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +KP GSS G+ +++ + + + + + Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDLADAIKEEQKTGTHVLIEQAIV 190 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 I + V + FY + K HV+PA++ D+Y Q LA Sbjct: 191 GTEITVPVIGNHHPHALPIVEIVFNAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQELA 250 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH A+GCRG+SR+DF+ D + + LE N+ PGMT S+ P+ AA+ G F EL Sbjct: 251 EQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPELCKR 309 Query: 292 MVEDA 296 +VE A Sbjct: 310 LVEYA 314 >gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum] Length = 343 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 143/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E VS+ S A+ ++ ++ I + +S L Sbjct: 6 VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKSGVWKLCEKPCLDWEQYAKY 65 Query: 50 ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + V + G+ V ++ S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKVD 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 K + + + + + + ++LIEQ V G E+ C V+G + + S + + Sbjct: 186 KAEDLCAAI--NEARQYDRKVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFKI 243 Query: 206 YSSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + T +PA +P + + +Q+ A +Q +GCRG++R D + Sbjct: 244 HQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARIDLFLRE-DGHIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ EL+ ++E A Sbjct: 303 LNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIELA 340 >gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 356 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S+E +VS + + +A++ + V I + Sbjct: 6 ICIIYGGKSAEHDVSKLTAQNVLNAIDKEKYLVDIIYITNDGLWKKKGNITATIESPEEL 65 Query: 46 -LAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L ++P D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 TLTDVEPEDITLLLKQSSAGEAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + + + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI +Q + + ++ +L+IEQ ++ E+ V+G+ + T V Sbjct: 186 GISKCNDEQELKAGIAEAF--QFDRKLVIEQGINAREVEVAVLGNDYPETTWPGEVVKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKIRLQIPAELDQEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ ++E A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIELA 341 >gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C] gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C] Length = 385 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 145/362 (40%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +++ + ++V I + L P Sbjct: 19 VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADAPERMAIADRQ 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 LPSVEALAESPDGTVVLPVDPASREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL IPY G+L+SA+ DK K+V +S G+ V P + + Sbjct: 139 LLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYVTIRPREWEADQAAATAKVL 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP + GSS+GI + + + ++ H ++++E + G E+ Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDASGLDAAIREAR--RHDPKVIVEALLRGREIE 256 Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C P S Y ++T ++PA + + EVQ+LA A Sbjct: 257 CGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKYIDSATGLVPAPLTPEQTAEVQKLAIDA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P M +G + EL+ +++ Sbjct: 317 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGIEYPELVDRLIQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 364 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + + + ++++EQ + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ PA+IP ++ +++ +A A+Q +GC G++R D Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ + + +L+ ++E A Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIELA 350 >gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae B728a] gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae B728a] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 369 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 61/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG +SE VS+ + A++ + ++V I + + VLA Sbjct: 11 VAIVFGGRNSEHAVSILGAGSVLGAIDRSKYEVIPIGIAQDGRWVLASGDQRYAIEGDEL 70 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F V+HG F EDG +Q +LE+ + Sbjct: 71 PSVDVQGTGLALPSGGGSLVAYDAGSIPVELGQVDVVFPVMHGPFAEDGTIQGLLEMAGV 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYV 129 Y SG+LASA+ MDK K V+++ G+PV P +++ + + P Sbjct: 131 RYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYVVIRDRDWRTDRDRVLKEVQELGWPVF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS GI + + + + H ++L+E + G E+ C V+ + Sbjct: 191 VKPARAGSSQGISKAHDLEELEAAVGFAR--EHDPKVLVEAAIAGREIECAVLESLGDEA 248 Query: 190 TEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP +F+ +E KY + + +PA IP D+ + ++ +A A +A+GC G Sbjct: 249 ARASVPGEVLVRGDHEFFDFEAKYIGDDMSLSVPADIPADVAENLRAMAVRAFEALGCEG 308 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +SR DF + ++ EIN PG T +S+ P++ A G S+ EL+ +++ A Sbjct: 309 LSRVDFFYTA-DGRLILNEINTMPGFTAMSVAPQLWAATGLSYAELVERLIQLA 361 >gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 365 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 147/352 (41%), Gaps = 59/352 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + AL+ F+V + + R+ VL P Sbjct: 9 VALVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGKWVLTSADPAQLAISARR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITADAGADLVLRADPTGSGLMVLDPAEGPRAIADVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ + G+PV P + + + + P + Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAVLRNGVTLSEEDKRRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189 KP + GSS GI + + + + ++L+E + G E+ CGV+ + Sbjct: 189 KPSRAGSSFGITKVDDWVDLEAAVAAAREI--DPKVLVEAAIVGREIECGVLEGEAGGGA 246 Query: 190 -----TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 E+ + + LPA +P + ++VQ A A A+ C G++ Sbjct: 247 EASVLVEVRAGGDHDWYDFEAKYLSEPEYDLPATLPEHVTRQVQEYAVRAFAALDCAGLA 306 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DF P V+ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 307 RVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAASGLEYPKLVNRLIRTA 357 >gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA] gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae SP195] gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae JJA] gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17570] Length = 347 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae] Length = 343 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 144/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG S E +VS+ S K A+ ++ ++ I + RS + Sbjct: 6 IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65 Query: 50 ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D F+VLHG GEDG +Q + EL IPY + Sbjct: 66 SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + V + G +++N + + ++ P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + ++LIEQ V G+E+ C V+G+ + + S + Sbjct: 186 NEDELDAAIETAR--QYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243 Query: 206 YSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA + + ++Q A ++A+GC+G+SR D + ++ Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFL-QENGRII 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M A AG + L+ + A Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLA 340 >gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEADFAAALALGF--EFDHKLLIEQGIVGREVECAVLGNDEPQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str. 301020] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R + E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R + E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 2250] gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R + E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 363 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P ++++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R + E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 351 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 154/336 (45%), Gaps = 49/336 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG S EREVSLSSG +AL G +V +D Sbjct: 3 IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62 Query: 38 --VDRSV--GLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEI 77 + R V L+ + D+ F LHG GE+G +QA+L+ I Sbjct: 63 WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 YT +G +MDK +K ++ + G+P L +S P V+KP GS Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLY--SRGESLEPFPYPCVVKPCGCGS 180 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI +++ + + L + ++ D++L E + G E + G++G+ +L +PK Sbjct: 181 SVGITMVEGEDQWEMALDSAF--SYEDRVLAEVKITGREFSVGILGERALPAI-EIIPKK 237 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY YE KY + + + PA + + + + +A H+ +G SR DFL + Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLM-EEDGSL 296 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F LE N PGMTP S+ P+ A AG S++EL +V Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQELCEEIV 332 >gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 363 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +L+SA+ MDK +K+++ G+ V P +++R ++ + P +KP Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNVDVQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01] Length = 320 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 8/302 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG 60 A+L GG S+EREVS+ SG +AL+ F V D + ++ D+A +LHG Sbjct: 7 ALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPRLVHDAPNIDVAVVMLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +Q +L++L+IPY SG+L SA+SM K+ SKQ+ G+ P +V+ Sbjct: 67 EYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVVSPDNRHE 126 Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P +KP GGSS+G+ ++K + L + + L I Sbjct: 127 AANLADQVGYPLFVKPCMGGSSIGMSLVKGPADLDKALDAGFAEDPVLLLEACVTGVEIT 186 Query: 177 LTCGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP + F+ Y KY + S + PA+I + ++ L+ A Sbjct: 187 GAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEGAQKAMDLSKQA 246 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 H+A+ C+G SR+D + D + LE N PGMT S+ P+ A AG F L+ +V+ Sbjct: 247 HKALFCKGYSRTDMILD-KDGALHVLETNTIPGMTANSLLPKAAKVAGMDFTALMSRLVD 305 Query: 295 DA 296 A Sbjct: 306 LA 307 >gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 356 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + ++ GG S+E +VS+ + + +A++ +++ I + D Sbjct: 6 VCIVYGGKSAEHDVSILTAQNVLNAIDKEQYQIDIIYITNDGAWKKKENIVDTINDIDSL 65 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RLIDVEAGEISKLLSQGSTGNAYSAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ + G+P P + R + P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI ++ + + ++ +L+IEQ ++ E+ V+G+ + T + + Sbjct: 186 GISKCNNEEELKNGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVIKEV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY +PA + ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKAKYKDGKIKLDIPADLDEEVQMTLRNMAVEAFKATDCAGLLRADFFVT-DDNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ ++E A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGVSYSDLIKKLIELA 341 >gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841] Length = 335 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 148/330 (44%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S L+ ++V I++ D Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V S++V + I P +KP GGSS G+ +K I + Sbjct: 125 KGFGVSVSESLIVRKGFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212 L++ D++++E +++G E++ G +V A + + Sbjct: 185 LKAMH--ESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEVVSDNEFFDYNAKYNGQVR 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEINVQ 265 + PA++ + + V + + + +GC GI R D++ + + + LE+N Sbjct: 243 EITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINMLEVNTT 302 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 303 PGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68] gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47368] Length = 347 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 288 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + + + DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK + + + + + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDK------LLTKKIASLEGVRMAKTYSN 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + S P ++KP K GSS+GI V + + L + +IE+Y+ G ELT Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEI-----SGYAMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDA 286 >gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1] Length = 390 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE +S+ + A A++ + V I + L +PD Sbjct: 24 VAVVFGGRSSEHTISVVTAGAVLRAIDREKYDVLPIGITGDGRWALTADEPDRMAIAGRV 83 Query: 53 ------------------------------------------LAFNVLHGNFGEDGLVQA 70 + F +LHG +GEDG +Q Sbjct: 84 LPSVEGLAESEDGSVLLPVEQGNREVVYAEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY +G+LASA+ MDK K+V S G+PV P ++ + Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWEKDPAAARKKIV 203 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++++E + G E+ Sbjct: 204 EFAGEHGWPVFVKPARAGSSIGISKVDDISGLEEAIEEAR--RHDPKIVVEALLRGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ V+PA + + + V+ LA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYIDSADGVVPAPLTEEQTERVRELAVRA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF S + EIN PG TP+S++P M +G S+ EL+ +++ Sbjct: 322 FEAASCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 380 Query: 295 DA 296 A Sbjct: 381 AA 382 >gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 363 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + L P Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P + ++R D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA+ P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R + E+N PG T +S++P++ +G ++ EL+ ++ A Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347 >gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75] gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14] gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292] gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293] gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458] gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457] gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397] gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA47901] Length = 347 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320] gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906] Length = 366 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S+E +VSL S K + L+ F + I ++ Sbjct: 6 VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F ++HG +GEDG +Q +L ++++ Sbjct: 66 TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 PY I++SA MDK +K+++ + + L + + + P IK Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L + + +++IE + G E+ C V+G+ +V+ Sbjct: 186 PANLGSSVGISKVNNEAEFNAALSMAF--EYDLKVIIESAIVGREIECAVLGNEEPEVSP 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + Y ++ V+PA + I +++ A A+Q + C G+SR D Sbjct: 244 CGEIVLNDAFYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V EIN PG T +S++P++ G ++ L+ ++E A Sbjct: 304 FLTE-DNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIELA 350 >gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae] gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 347 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium] Length = 343 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++ + ++L+E+ V G E+ C ++G+ + + + + Sbjct: 186 RAEELQAAVTEAG--KYDCKILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ E+L ++E + Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340 >gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5] Length = 347 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENHEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 404 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 149/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ F V + + +L P Sbjct: 37 VAVVFGGRSGEHTISCATAAGVLSAIDRDRFDVLPVGITLDGQWLLVDDDPAALALDESR 96 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 97 PPVEITAEGLGRGELAMRLGGGAFTAVTPTGPKVLGEVDVVLPLLHGPYGEDGTIQGMLE 156 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125 +L+IPY G+LASA MDK +K ++++ G+P ++V+ DS+ + Sbjct: 157 MLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHVVVHPHRWDSERELILDACEALT 216 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI +++ + +P + + ++L+E V+G E+ V+ Sbjct: 217 YPLFVKPARAGSSLGITKVERREDLPAAIEAAREV--DPKVLVESGVEGREVEVAVLDGH 274 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234 +A P V PA++ + ++ A A Sbjct: 275 HGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQMVCPARVSHQESELLKETAARA 334 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G G+ R DF P + E+N PG TP S++P M +G S+ +L+ ++E Sbjct: 335 FEALGGEGLMRVDFFLTPR-GEAVVNEVNTMPGFTPFSMYPYMWQVSGLSYTDLVSELIE 393 Query: 295 DA 296 A Sbjct: 394 LA 395 >gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314] gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 361 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG S+E VS S A + L+ ++V + + V+ P Sbjct: 11 VAVLYGGRSAEHSVSCVSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q + L +IP Sbjct: 71 MPEVQRREEIRPSLDPAHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135 G+L+SA MDK +K+++++ G+P+ +++ T + L+ P +KP +G Sbjct: 131 VVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + +P + + H +++++E + G E+ CGV+ + Sbjct: 191 GSSIGISKVSRWEDLPAAVDLAR--QHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPA 248 Query: 196 KSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + +I + VQ LA QA+ C G++R D Sbjct: 249 MLRGTEDGEGGFYDFDTKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M A +G + ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 355 >gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41] Length = 364 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 147/341 (43%), Gaps = 46/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49 + +L GG S+E EVSLS+ +A AL ++V I + + L Sbjct: 10 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69 Query: 50 KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 70 QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R + ++ P +KP Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + ++ + IEL + V P Sbjct: 190 GSSVGISRATNRDELIKAIEVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEIKP 249 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++FY Y+ KY ++ ++PA++P + ++ LA A +AI G+ R+DF Sbjct: 250 VTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADFFVTA-DN 308 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 309 SVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 349 >gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162] Length = 344 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 135/339 (39%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER+VS+ SG SAL + +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62 Query: 39 ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 +S + LK D F LHG+ GEDG +QA+ +L+ I Sbjct: 63 VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKG 135 YT +G L+SA++MDK +K + GVP + + + + P V+K G Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ ++ L + ++ + + + D VP Sbjct: 183 GSSIGVYIVDNQADYTKALDGAFTYENEVVVEEFVEGTEYTVAVV---DGKAYPVVQIVP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY YE KY PA I ++ + +Q A + A+ R DF+ Sbjct: 240 VQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVT-KDE 298 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ LE N PGMTP S+ P+ AA G + L ++ Sbjct: 299 KIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIR 337 >gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152] Length = 324 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG SSE ++S+ SG L+ + V ++ + + +VL Sbjct: 5 IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 H+K D FN +HGN GE+G++ + LELL IP+T + AL+ +K + VV Sbjct: 65 SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ + + I P IKP GSS GI ++ I +L+ Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + N +LIE +++G E++ + + V ++DF+ YE K S Sbjct: 185 AY--NEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEIVSENDFFDYEAK-YEGKSQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I K V+ +A ++ + G SR++++F ++ + ++LEIN PG+T SI Sbjct: 242 ITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEESI 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S +L ++ A Sbjct: 300 LPQQAKEAGISLAQLFDNAIQMA 322 >gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725] Length = 355 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 56/348 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S+E VS S A L+ F+V I + R Sbjct: 7 VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66 Query: 49 -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F +LHG +GEDG +Q + EL IPY Sbjct: 67 EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+++S+ G+PV P ++V T++ + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + P + + D++L+E + G E+ GV+ ++ Sbjct: 187 SSIGVSKVSDWADFPEAVRIALED--DDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY +E KY T +PA P ++ +++ +A A +A+ C G+SR DF Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG TP+S++P++ A +G + LL ++ A Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASA 350 >gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18] Length = 372 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 142/361 (39%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + ++ H +++IE + G E+ C V+ Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235 ++ + P + PA +P D+ ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQDRLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56'] Length = 380 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 151/361 (41%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E E+SL S + AL+ F+ I +D+S +L Sbjct: 9 VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 D+ F VLHG GEDG VQ +LEL Sbjct: 69 LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----------- 125 +PY SG+L SA+ MDK K+++ +P+ P + + R D Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188 Query: 126 ----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180 P +KP GSS+G+ +K I + + +++ EQ ++G E+ C Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAVEHAF--EFDLKIVCEQGIEGVREIECS 246 Query: 181 VMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235 V+GD + FYSY KY + T +PA + VQ +A A Sbjct: 247 VLGDDDPIASVPGEIVVGHADGFYSYAAKYIDADGATIRIPADLSPAEANAVQLVALRAF 306 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +A+ G++R D P R ++ EIN PG T +S++P++ +G REL+ ++ Sbjct: 307 RALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIERLIAL 365 Query: 296 A 296 A Sbjct: 366 A 366 >gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5] gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5] Length = 331 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 16/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V+++ S+P + + + L+E+YV Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAM--VGCFAYDQTALVERYV 200 Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+++ V VP++ Y Y +Y++ +T PA++ V Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEIVPRNGVYDYAARYTAGRTTWHAPARLDAATTARVTE 260 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F +L Sbjct: 261 VALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRVL 319 Query: 290 LWMVEDASCLR 300 +V A+ R Sbjct: 320 GTLVTRAAARR 330 >gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029] Length = 331 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 16/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G D D ++ L PD LHG Sbjct: 23 VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L ++PY +S L+ DK +K V+ G+P + + Sbjct: 83 GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V+++ S+P + + + L+E+YV Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAM--VGCFAYDQTALVERYV 200 Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+++ V VP++ Y Y +Y++ +T PA++ V Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEIVPRNGVYDYAARYTAGRTTWHAPARLDAATTARVTE 260 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R +SR D + D LE+NV PGMT S+ P AG F +L Sbjct: 261 VALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRVL 319 Query: 290 LWMVEDASCLR 300 +V A+ R Sbjct: 320 GTLVTRAAARR 330 >gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 372 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 144/361 (39%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ ++V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYEVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGTGDSRLTLVDAEGIVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNREWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + ++ H +++IE + G E+ C V+ Sbjct: 187 GFPLFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235 ++ + P + PA +P D+ + ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont] Length = 364 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ G S+E EVSL S K A++ + V + +D+ L Sbjct: 6 VGIVFGDKSAEHEVSLQSAKNILEAIDKNKYDVVLLGIDKQGEWHLNDASGFLLNADNPA 65 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ ++HG GEDG +Q +L + + Sbjct: 66 LIAPNRSGENVALVPGSRGEQLITRQQAQPLSPLDVIIPIVHGTLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ S +L SA+SMDK +K+++ G+ V P + V + P IK Sbjct: 126 PFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWLSVTQAQRAALDVQAVIARFGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ + + L + ++LIEQ + G E+ C V+G+ + + + Sbjct: 186 PANQGSSVGVSKVTQPDEFDAALGLAF--RFDRKVLIEQGISGREIECAVLGNEAPEASP 243 Query: 192 IAVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ + V+PA I + + ++ +A A QA+ C G++R D Sbjct: 244 CGEIVVHDAFYSYDTKYISESGTQVVVPADISTEASEAIRAVAITAFQALECFGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T +S++P++ AG S+ +L+ ++E A Sbjct: 304 FLTE-TGDIIVNEVNTLPGFTNISMYPKLWLAAGLSYSDLITRLIELA 350 >gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] Length = 312 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 138/303 (45%), Gaps = 10/303 (3%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +LMGG S+ERE+SL SGKA +AL + G V+ D + + D+ F LHG Sbjct: 5 LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRHDVVFLALHGTG 64 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----T 117 GEDG +Q++LE +P+T S AS ++ K SK G+ + Sbjct: 65 GEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAIEKI 124 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P+ +KP GSSLG+ I + +P + LIE+ + G E Sbjct: 125 QNRAARLVSPWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKL--DKAGLIEEAISGTEW 182 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G+ + +F +Y KY + H + + K++ +A A+QA Sbjct: 183 TVGLFDSVTFPPV-AIQAHREFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVAREAYQA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +G G++R D + D + LE+N PGMT S P+ AA G+S EL M A+ Sbjct: 242 VGATGLARVDLICDVQGN-PWILEVNTIPGMTETSTVPKAAAAFGWSLGELCERMC-AAA 299 Query: 298 CLR 300 R Sbjct: 300 IER 302 >gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455] Length = 347 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202] Length = 355 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 142/343 (41%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E EVS+SS K A + FKV +D+ + Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG + +L+ + P Sbjct: 69 EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ + + V IE + Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQKIDSRILVEEGLEVREIECGIIGNSELLTSEIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +SD+Y Y+ K N+ ++PA+I I KE++++A + +A+ G +R DF + Sbjct: 249 EVKYESDWYDYDSK-YYSNNKIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 308 KYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus] gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus] Length = 343 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S + A+ +++ ++ I + + + Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G++S + + Sbjct: 186 GADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA + +++ +Q A ++A+GCRG+SR D + + Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFL-QDNGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG + EL+ ++ A Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLIVLA 340 >gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597] Length = 347 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827] Length = 367 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 145/347 (41%), Gaps = 55/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E EVSL S K + L+ F V I +++ Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 L +P D+ F ++HGN GEDG +Q +L + + Sbjct: 66 RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131 P+ G+L S+ MDK +K+++ G+ V P I + + + P IK Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+GI + + L + ++LIE V G E+ C V+G+ + Sbjct: 186 PANQGSSVGISKVTNESEFKAALDFAF--LFDMKVLIESAVKGREIECAVLGNEQPLASP 243 Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y ++ V PA + +++ +++ +A A++A+ C G+SR D Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 V EIN PG T +S++P++ G +++ L+ ++E Sbjct: 304 FLTE-DNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIEL 349 >gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974] Length = 358 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 54/345 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 V+ GG+SSE E+S S + + L+ + ++ + + + VL P Sbjct: 9 VVFGGVSSEHEISCLSAASILAQLDSSRYEAVPVGITKEGDWVLDRRPPEVLGDKLGGLP 68 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q +LE +P Sbjct: 69 QVDASAPRVALAVGRTGSGELRQVSDGALVATADVVFPVLHGPFGEDGTLQGLLEFANLP 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLK 134 Y G+ ASA MDK + K ++ G+PV P + + + P +KP + Sbjct: 129 YVGCGVFASAACMDKTQMKVLLRGGGLPVGPYEALAPGEDVDEAALRDRLGLPLFVKPAR 188 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTE 191 GGSSLG++ +++ + +P + + + ++L+E + G E+ C Sbjct: 189 GGSSLGVVKVERWEDLPEAVAVAR--KYDPKVLVETGIAGREVECAVLEFPDGRVEASVL 246 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + D Y +E KY + + +PA + + E++ LA A + + C G++R DF Sbjct: 247 GEIVVPDAYDFETKYLNNIARLQVPADVSEPLASEIRALAVRAFETMDCSGLARVDFFI- 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P+M G + +LL ++E A Sbjct: 306 AEDGGPIINELNTLPGFTTSSLYPKMWEQTGLDYSKLLDTLIETA 350 >gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM 17244] Length = 358 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 42/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + V+ GG S E +VSL S + + F ++ I + + Sbjct: 7 VGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEWI 66 Query: 49 ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D+ F VLHG GEDG +Q + E+++ PY +LAS++ Sbjct: 67 NDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKGGSSL 139 MDK +K++ S G+PV +LV + + P +KP+ GSS+ Sbjct: 127 MDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 GI K S+ LL++ ++ + IE+ V +F Sbjct: 187 GISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSCKEF 246 Query: 200 YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 Y YE KY S S +PAKI I ++++ A A +A+G G+SR DF D S+ ++ Sbjct: 247 YDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKDIY 306 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 E N PG T +S++ +M Y G + +L+ +++ Sbjct: 307 LNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDL 343 >gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902] gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902] Length = 350 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 144/341 (42%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E EVS+ S L ++V +D+ VLA Sbjct: 8 IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67 Query: 49 LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 KP + + VLHG GEDG VQ + +L+ P+ +G+L Sbjct: 68 QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKG 135 SA+SMDK+ K + G+ P + + + P +KP Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ + + +E V Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQLDPRLVVEQGVDARELECAVLGRHQLRSSVVGEVRF 247 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y Y KY++ ST V+PA++P + + VQ+ A A A+G G++R DF +D S Sbjct: 248 DADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNTSH 307 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + +L+ +V+ A Sbjct: 308 QLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348 >gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74] Length = 347 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVTFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 351 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 56/343 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 +AVL GG S+ER VSLSSG +AL G+ + ID+ Sbjct: 3 IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62 Query: 39 ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71 ++V +L D F LHG GE+G VQA+ Sbjct: 63 TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAA--DFVFLALHGGDGENGKVQAV 120 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVI 130 L+L I YT SG LAS ++MDK SK+++ + +L + + Q P V+ Sbjct: 121 LDLNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVV 180 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GGSS+G ++ + + L + D++++E+++ G E + GV+ ++ Sbjct: 181 KPNSGGSSIGTRIVHDEAELAESLKDAY--RFDDEIIVEEFITGREFSLGVVNGQAMPAI 238 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 EI V + + + V P +I D++ E++R+A A+G R DFL Sbjct: 239 EIVVNDGWYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLT 298 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E N PGMTP+S+ P+ A AG S+ +L +V Sbjct: 299 NDTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIV 339 >gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489] Length = 324 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A++MGG S+E ++SL SG L F + +I + D+S Sbjct: 5 IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64 Query: 44 LVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ +K D FN +HG GEDG +QA L+ I T +AL+ +K + Sbjct: 65 SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ + ++ I P +K K GSS GI + K + +P + Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAIEN 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 + D+++IE ++DG E++ GV+ + + + S + Sbjct: 185 AY--LADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITTENDFFDYEAKYEGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I + ++V +A ++ + +G SRS+F+F + + F LE+N PG+T SI Sbjct: 243 TPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEESIL 300 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ AA AG S +L + +A Sbjct: 301 PQQAAVAGISLSQLFESAITEA 322 >gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 347 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R] Length = 288 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 14/297 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG+SSE+EVS+ SG+A +L+ G+ + + +++ + DLA+ LH Sbjct: 3 IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +Q++LELL YT SG+ ASA+SMDK + + + + + + Sbjct: 63 GGAGENGEIQSVLELLGKKYTGSGVAASAISMDK------LLTKKIASLEGVRMAKTFTT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P ++KP K GSS+GI V + + L + +IE+Y+ G ELT Sbjct: 117 VAEISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEI-----SGYAMIEEYIQGEELTV 171 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I +D Y YE KY++ S H PA+I Y+E A H+A+G Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G+SRSDF+ +V++LE+N PGMT S+ P++A GY+F ++ +VEDA Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDA 286 >gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC 27560] gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 158/337 (46%), Gaps = 46/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+EREVS++SG AL +DV Sbjct: 7 IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66 Query: 39 DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 +++ + K D+ F LHG GEDG QA +L I YT Sbjct: 67 KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSL 139 SG LASA+ MDK +KQ+ S GVP S+ + + T + + P V+K GGSS+ Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G++++ ++ + +Q+L+E ++ G E + GV+ +L +P+ + Sbjct: 187 GVVLVHQESEYEDAVKTCFEL--DNQILVEDFIKGREFSIGVINKKAL-PVVEIIPRDGW 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ K + + V PA + ++ K++Q++A A AIGC +R+D + D +F Sbjct: 244 YDYKNK-YNGATEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE+N PGMT S+ P+ A G F L ++VE + Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVELS 338 >gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 363 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + KP D+ F ++HG FGEDG +Q +L +L I Sbjct: 65 RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P D+ + P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ + V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNHAPQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TDA-RQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63] Length = 349 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG S+E EVSL S + + + + I + R+ + Sbjct: 6 IAVIFGGNSTEYEVSLQSAFSVFENINHDKYDIIPIGITRNGDWYHYKGRYENIANNTWS 65 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 DL F +LHG GEDG +Q + EL IP Sbjct: 66 GDRDNLYPVTVSVSHSQKGIWEFDEDQYTAVHIDLVFPILHGKNGEDGTLQGMFELSGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPL 133 LASAL MDK R+ ++VS GV V S+ R ++ +S P +KP+ Sbjct: 126 VIGCNTLASALCMDKDRAHKLVSLAGVKVPKSVTFKRSEKNTALKKIETELSYPLFVKPV 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I + + + + + + + ++ + Sbjct: 186 RAGSSFGITKVTEQAEINTAIESAFEHDTEVIVEEAIGGFEVGCAILGIDNLTVRRIDEI 245 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + F+ Y KY+ S +PA++ K VQ A ++A+GC G +R D + P Sbjct: 246 ELSNGFFDYTEKYTLKTSKIHMPARLSPKEEKRVQETAVAIYKALGCSGFARVDMFYTP- 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 S ++ + E+N PG+T S +P M G SF ++L ++ Sbjct: 305 SNEIIFNEVNTIPGLTSHSRYPNMMKGIGLSFADMLDKLI 344 >gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX] gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 371 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 61/360 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE E+S + + SA++ + + I + R L P Sbjct: 9 VAVIFGGRSSEHEISCVTAGSVMSAIDTDRYDILPIGITRDGDWRLVTADPSELAIVDGK 68 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ +LHG FGEDG +Q +LEL Sbjct: 69 LPAVPDSGARLALALDTPGAFLEVAPDSLPRLVGQVDVVLPLLHGPFGEDGTIQGLLELA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127 + Y +G+ ASA SMDK+ K ++++ G+ P + V+ + Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188 Query: 128 YVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 +KP + GSS+GI V + + ++ H ++++E + G E+ CGV+ Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAARAHDPKVIVEAGIQGREIECGVLESLD 248 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++++P + + + + +PA +P ++ + V++LA A A+GC Sbjct: 249 GGEPDVSLPAEIHVAEGYDFYDFEAKYLSNSGLSIPADLPDEVTQRVRKLAAEAFDALGC 308 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G++R DF + +++ EIN PG TP S FP+M A +G + L+ ++ A R Sbjct: 309 EGLARVDFFY-GDDGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTALVRR 367 >gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 335 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 142/330 (43%), Gaps = 37/330 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S L+ ++V I++ D Sbjct: 5 IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++PD A+ +HG GE+G++Q +L+ +PY+ S +L A++ +K Q + Sbjct: 65 SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124 Query: 101 SSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V + I P +KP GGSS G+ +K I + Sbjct: 125 KGFGVSVSESLIVRKGFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212 + D++++E +++G E++ G +V A + + Sbjct: 185 --LKAMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEVVSDNEFFDYNAKYNGQVR 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEINVQ 265 + PA++ + + V + + + +GC GI R D++ + + + LE+N Sbjct: 243 EITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINMLEVNTT 302 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PGMT S P+ AG +++L ++E+ Sbjct: 303 PGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332 >gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876] Length = 356 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLKP-- 51 +AVL GG SSE ++S S +++ + V + + + + + K Sbjct: 6 VAVLFGGQSSEHDISCISAATVIESIDREKYDVITVGITKDGRWIKTDNVEDIKSGKWRE 65 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ F VLHG +GEDG +Q ILEL IPY Sbjct: 66 GKVTMILSPDRIHKGFVEIEDGKAEVTEVDVVFPVLHGLYGEDGTIQGILELAGIPYVGC 125 Query: 83 GILASALSMDKMRSK---------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G++ASA+SMDK+ +K + V +++ + + P +KP Sbjct: 126 GVVASAVSMDKLFTKKIVDGLKDVRQAKYVPVRRYELKEMDKVLDGIEERLPYPVFVKPS 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS G+ + L ++ H +++L+E+ + G E+ C V+G + + + + Sbjct: 186 NAGSSKGVSKAGDRAGLEKALRLAA--EHDEKILVEETIVGREIECAVLGTSDVKASGVG 243 Query: 194 V----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + FY ++ KY++ S V+ ++P EV+ A +A+ G+SR DF Sbjct: 244 EILAADSAAFYDFDAKYNNAESKTVINPELPDGKTDEVRNDAVRIFKAVDGFGLSRVDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + + V + EIN PG T +S++P + A G +EL+ ++ +A Sbjct: 304 IENGTNDVVFNEINTMPGFTSISMYPMLWADRGIEKKELVDELINEAFTR 353 >gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA17545] Length = 347 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S + A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum] Length = 343 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L + +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSALTTAF--AYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311] gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311] Length = 353 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45 + V+ GG S E VS+ S +AL++ F+V + +D+ Sbjct: 8 IGVVFGGASGEHAVSIRSAITVINALQEGQNRDHFEVVPLYIDQEGRWWPEHIANSVLEQ 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + + D+ F VLHG GEDG VQ + L+ PY SG Sbjct: 68 KQPLAEDSLPHPLPPAGFRSLPIDNDRVDVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+P P + +N ++ + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190 GSS+GI + + L +++ H +L++E V EL C V V Sbjct: 188 ANMGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVV 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++D+Y YE KY+ S ++PA +P + ++Q +A A A+ G++R D + Sbjct: 246 GEISFEADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S ++ EIN PG T S++P + +G + +L+ +V A Sbjct: 306 DEKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351 >gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 400 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 146/359 (40%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S E +S ++ A++ + V + + R+ VL PD Sbjct: 37 VVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDGR 96 Query: 53 --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74 + F +LHG FGEDG +Q +LEL Sbjct: 97 LPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLEL 156 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 ++ Y +G+LASA+ MDK K V++ G+PV P +V D + Sbjct: 157 ADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAGLGL 216 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP + GSSLGI + +P + ++ H ++++E + G E+ C V+G Sbjct: 217 PVFVKPARAGSSLGISKVDDLADLPAAVAEAR--RHDPKVIVEAGIVGREIECAVLGGRR 274 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237 + ++P + PA + ++ EVQ +A +A Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G+SR D +V EIN PG TP S++P M +G + EL+ +VE A Sbjct: 335 VSGEGLSRVDVFVTEA-GEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392 >gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 372 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 68/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + V I + R L + Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG VQ +LE Sbjct: 67 GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124 + ++ Y G+ ASA+ MDK K S G+ V P +V + + + Sbjct: 127 MADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS GI + + + + ++ H +++IE + G E+ C V+ Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235 ++ + P + PA +P D+ + ++ LA A Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ G+SR+DF + ++ E+N PG TP+S++ M G S+ +L+ ++ Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363 Query: 296 A 296 A Sbjct: 364 A 364 >gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54] gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974] gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974M2] gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54] gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70] gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69] gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73] gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae MLV-016] gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54] gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104] gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus pneumoniae AP200] gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41301] Length = 347 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 367 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 52/340 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG S+ER++S+ + +L G+ + +DV Sbjct: 27 IVVLAGGTSTERDISILTSTKVCESLRRNGYNANIVDVFFGIDSENVDNFFNNDNDLEKL 86 Query: 39 -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74 V L K D+ F LHG+ GEDG +QA EL Sbjct: 87 CKYLKNQTPDVEKELEARKALGKGFFGDNVLELCQKADIVFMGLHGSNGEDGKIQAAFEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + I YT + ++SA+SM K +K+V+ G+P+ I +++ + P V+KP Sbjct: 147 MGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPKGIALHKGHKVEY--VPFPCVVKPCC 204 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GGSS+G+ ++ ++ L + ++ D +L+E+++ G E + GV+ +L V Sbjct: 205 GGSSVGVSIVNSEEEFKRALTDAF--SYEDNILVEEFIKGREFSVGVLNGKALPVI-EIE 261 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P FY Y+ KY + + PA +P +I +++QR A A + G +R D L + Sbjct: 262 PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQRWAEKACETAGVTTYARVDELLNE-D 320 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ LEIN PGMT S+ P+ AA G S+ EL ++E Sbjct: 321 GDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELTKKIIE 360 >gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum] Length = 303 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 6/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + + I Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPDKI 120 Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P ++KP GSS+G+ + +P L + H ++L+E ++ G E+ ++ Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFPDLPQAL--LEAEKHSSRILVEPFLPGREVQSAIL 178 Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + FY+Y KY S H+ PA + D+ ++ A + R Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLELR 238 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R D L P +V LE+N PG+T S+ PE+A G SF +L+ ++ A Sbjct: 239 GVARMDTLVLP-DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSARLD 295 >gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321] Length = 347 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Hungary19A-6] gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Hungary19A-6] Length = 347 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGITYPDLIERLVELA 335 >gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC 13129] gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae] Length = 365 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 151/349 (43%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS S A + L+ ++V + + + P Sbjct: 18 VAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVDRV 77 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG +Q + EL +P Sbjct: 78 MPEVQFTREVSLSVNPTTAGELCFEDGSLYAKVDVVFPVLHGRFGEDGTIQGLFELSGVP 137 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ + + + P +KP +G Sbjct: 138 YVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGLPVFVKPARG 197 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + L + H ++++E + G+E+ CGV+ + Sbjct: 198 GSSIGISRVADWSEWDAALSLAR--EHDSKVIVEAEIVGVEVECGVLERIDGSLMASVPA 255 Query: 196 KSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + FY ++ KY T +PA + +Q L+ A A+ CRG++R D Sbjct: 256 QLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD 315 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P++ G + +LL ++E A Sbjct: 316 FFVT--DHGPVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362 >gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS] gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS] Length = 371 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 66/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F V + + VL +P Sbjct: 10 VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 70 LPEVSAESGTALALPADPGRRGELVSLSPAPAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPY 128 EL +PY +G+LASA MDK +K+++ + G+PV +++ + + + P Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186 +KP +GGSS+G+ + +P + + H ++++E + G EL CGV+ Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAIEAAR--RHDPKVIVEAGIAGRELECGVLEYPDGR 247 Query: 187 --------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + V + + FY + KY + +PAK+ D+ E++RLA A +AI Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G++R DF EIN PG T +S++P M A +G + LL MV+ A Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365 Query: 299 L 299 Sbjct: 366 R 366 >gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS] gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS] gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS] gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS] Length = 371 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 66/361 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F V + + VL +P Sbjct: 10 VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 70 LPEVSAESGTALALPADPGRRGELVSLSPAAAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPY 128 EL +PY +G+LASA MDK +K+++ + G+PV +++ + + + P Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186 +KP +GGSS+G+ + +P + + H ++++E + G EL CGV+ Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAIEAAR--RHDPKVIVEAGIAGRELECGVLEYPDGR 247 Query: 187 --------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + V + + FY + KY + +PAK+ D+ E++RLA A +AI Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 C+G++R DF EIN PG T +S++P M A +G + LL MV+ A Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365 Query: 299 L 299 Sbjct: 366 R 366 >gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus] gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus] Length = 343 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + + ++L+E+ V G E+ C ++G+ + +T + + Sbjct: 186 RAEELQAAV--TEAGKYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG++ E+L ++ Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337 >gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143] Length = 347 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++R A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS+ S A+ + ++ I + +S L Sbjct: 6 IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + +S P +KP + GSS G+ + Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++ + ++L+E+ V G E+ C ++G+ + +T + + Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M AG++ E+L ++ Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337 >gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9301] gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301] Length = 355 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 139/343 (40%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E EVS+SS K A + F V +++ + Sbjct: 9 IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG + ++ + P Sbjct: 69 EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIK 131 GI+ SAL MDK+ K + S+ +P ++ ++ + + P +K Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI +K + I L L ++ + + V IE Sbjct: 189 PSNSGSSLGISKVKNESEILLALEKAWGIDPRILIEEGLEVREIECGIIGNSKLITSEIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +SD+Y Y+ K N+ ++PA+I I E++ +A + +A+ G +R DF + Sbjct: 249 EVNYESDWYDYDSK-YHSNNKIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S K+ EIN PG T S+FP + +G +L+ +V+ Sbjct: 308 KSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350 >gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9215] gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215] Length = 355 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 141/343 (41%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E EVS+SS K A + FKV +D+ + Sbjct: 9 IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG + +L+ P Sbjct: 69 EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131 GIL SA+ MDK+ K + S+ +P + + ++ P+ +K Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + + I L ++ + + V IE + Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQKIDSRILVEEGLEVREIECGIIGNSELLTSEIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +SD+Y Y+ K N+ ++PA+I I KE++++A + +A+ G +R DF + Sbjct: 249 EIKYESDWYDYDSK-YYSNNKIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S K+ EIN PG T S+FP + +G + +L+ +V+ Sbjct: 308 KSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350 >gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1873-00] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585] gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae 70585] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031] gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae P1031] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVDLA 335 >gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae Taiwan19F-14] gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae Taiwan19F-14] gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA04375] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRPALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC0288-04] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNVGISYPELIERLVDLA 335 >gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1] Length = 356 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 149/347 (42%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + + L+ F+V + + R V P Sbjct: 8 VAVVFGGRSSEHAISCVSAGSVLTHLDPERFEVVPVGISRDGAWVTGPSDPRELGISGRE 67 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F +LHG FGEDG +Q +LE+ +P Sbjct: 68 LPEVDGTSDALVLPGEPGRGLIRLDAGEALSQVDVVFPILHGAFGEDGTIQGLLEMAGLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKG 135 Y +G+LASA+ MDK +K+++ + G+ V I++ T + + P +KP + Sbjct: 128 YVGAGVLASAVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARA 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192 GSS+G+ + + + ++ H ++L+E V G E+ C V+ V Sbjct: 188 GSSMGVTRVTDPAGLDAAIAEAR--EHDPKVLVESAVPGREVECAVLEFPDGSVRASLPA 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + + S +PAK+ +I V+ A A +A+ +G++R DF Sbjct: 246 ELRYNGEFYDFESKYLDVSELEIPAKLDDEITDSVRWKAVTAFRALDVQGLARVDFFVT- 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E+N PG TP S FP+M A G + ELL MVE A Sbjct: 305 DDGHITVNEVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETALAR 351 >gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97] gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis AF2122/97] Length = 370 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 155/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F V + + + VL PD Sbjct: 10 VAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRE 69 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 70 LPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129 L +PY +G+LASA+ MDK +K+++++ G+PV + + P Sbjct: 130 LAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 190 VKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTL 247 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ + + +++LA A AI Sbjct: 248 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAID 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 CRG++R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 308 CRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 365 >gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ ++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335 >gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 363 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNNEAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus JCSC1435] gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435] Length = 356 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E +VS + + +A++ + V I + Sbjct: 6 ICIVYGGKSAEHDVSKLTAQNVLNAIDKERYLVDIIYITNDGLWKKKENITEEIKEIESL 65 Query: 49 --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D F +LHG GEDG +Q + E+L++PY +G+LA++ Sbjct: 66 NMTDIEAGEITILLKESSNGKPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ G+P P I R + + ++ P +KP GSS+ Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197 GI + + + ++ +L+IEQ ++ E+ V+G+ + T + Sbjct: 186 GISKCNNEDELKSGIEEAF--QFDRKLVIEQGINAREVEVAVLGNDYPETTWPGEVIKDV 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y+ KY + +PA++ ++ ++ +A A +A C G+ R+DF ++ Sbjct: 244 AFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E N PG T S++P + G S+ +L+ +++ A Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341 >gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175] Length = 357 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 147/346 (42%), Gaps = 51/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V+ GG S+E ++S+ + + + + V + + + + Sbjct: 3 VVVIYGGKSAEHDISILTAGSIIKEIYFEYYDVEPVYITKEGTWLKGEALKAPVAFDQAL 62 Query: 50 -----------------------------KPD-LAFNVLHGNFGEDGLVQAILELLEIPY 79 PD + F +LHG GEDG +Q + E+L++PY Sbjct: 63 RLTEGLEARFATVEGEVSTGVRIQPSDIAGPDTVVFPILHGPNGEDGTIQGLFEILDLPY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVI 130 G+LASA MDK+ SK + G+P P + + + + P + Sbjct: 123 VGCGVLASANGMDKIASKHLFQQAGIPQVPFVPFVKADFKKSPEAIYNRIEGTLRYPVFV 182 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + +E+ + + V Sbjct: 183 KPANMGSSVGISKATNREELTAAIEEALKYDRRIVVEQGIDAREVEVAVLGNDEVNTSVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V ++ FY Y KY + +T +PA IP ++ +++ A A +AI G++R DF Sbjct: 243 GEVVKQAGFYDYNEKYINNTTTLQIPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDFFL 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++VF E+N PG T S++P++ G S+++L+ ++ A Sbjct: 303 TE-TQEVFINEVNTMPGFTQFSMYPKLWEAMGISYKDLVEELIRLA 347 >gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis] Length = 352 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 161/340 (47%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG+SSE EVSL S A +E + V +I + L Sbjct: 4 VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +KPD+ F VLHG +GE+G +Q + ELL+IPY G Sbjct: 64 LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSS 138 I A+A+SM+K+ Q + GV PS+++ + + P IKP + GSS Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQKVDAFAKIHGFPLYIKPNEAGSS 183 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196 GI +++ + + ++S + ++LI++ V G+E+ CG+ + + Sbjct: 184 KGISKVERKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGCGILGNEQLVVGECDQISLV 241 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 F+ YE KY+ + + +LPAK+ +D +++Q A ++ +GC+G++R DF + Sbjct: 242 DGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLT-DDGE 300 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + EIN PG T S FP M G ++E++ ++ A Sbjct: 301 ILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLA 340 >gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4] gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae TIGR4] gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4] Length = 347 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY N T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured actinobacterium HF0200_46I24] Length = 364 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 52/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+E EVS+ S ++ +A++ + V +D+ Sbjct: 8 LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L + ++ F +LHG +GEDG +Q +LEL + Y +G Sbjct: 68 DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134 + ASA+ MDK+ ++ + ++ G+P ++ R + P +KP Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI + Q + L +S ++ ++ + EL C + Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDT-KLIIERSVENARELECAILGNDYPKASGVGE 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +P +FY Y KY S V+PA + + VQ LA A +AI C G++R D Sbjct: 247 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFMC- 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 V EIN PG TP+S++P++ A AG + +L+ +++ Sbjct: 306 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQL 348 >gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 366 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 145/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNRNVALIPGQENQQLIAADNAAVLAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG+L SA+SMDK +K+++ G+ + P I N + P IK Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C VMG+ S + Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVALAF--DFDHKVLVESAIVGREIECAVMGNDSPQASV 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N ++PA I D ++ +A A A+ CRG++R D Sbjct: 244 CGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ G EL+ ++E A Sbjct: 304 FLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIELA 350 >gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473] Length = 363 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 55/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP-- 51 V+ GG S+E EVSL S K A++ F+V+ + +D+ +L P Sbjct: 2 GVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPAL 61 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F ++HG GEDG +Q +L + +P Sbjct: 62 IALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANMP 121 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKP 132 + SG++ SA SMDK +K+++ G+ + P I + + P IKP Sbjct: 122 FVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANREQYGFEPVREKLGLPLFIKP 181 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ + + + + + ++L+E + G E+ C V+G+ + Sbjct: 182 ANQGSSVGVSKVCSAEEFTAAVELAF--SFDHKVLVESAIVGREIECAVLGNDQPKASLC 239 Query: 193 AVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 Y ++ V+PA + + ++ +A A + + C G++R D Sbjct: 240 GEVVISDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMARVDVF 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P K+ EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 LTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIELA 345 >gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)] gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName: Full=Vancomycin resistance-like protein gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)] Length = 346 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWENGDCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG Q +LEL IPY + Sbjct: 66 PVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE V G E+ C ++G+ + + + + Sbjct: 186 RPEDLATAVESAR--RYDTKVLIEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + V+PA IP + VQ A ++A+GCRG+SR D +V Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PGMT S +P M A AG E++ + A + Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344 >gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 392 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 35/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE EVSL S + S + + V +D+ D Sbjct: 67 IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186 Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + V + + P +KP GSS G+ +K + L Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL 246 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNS 211 ++ D +IE ++DG E++ G V ++F+ Y+ K + Sbjct: 247 RKALM--EDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAK-YNGQV 303 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGM 268 + PA+I + + V ++ + C GI R D++ + K+ +E+N PGM Sbjct: 304 EEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTPGM 363 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP S P+ AG +++L +VE+ Sbjct: 364 TPTSFIPQQVRAAGMEMKDVLSEIVEN 390 >gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341] Length = 355 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E +SL + K+ +A++ + V I Sbjct: 6 IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T ++ + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + ++ ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGIEEAL--KFDKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA + +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTKE-GEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A S+ E++ + + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFKLA 341 >gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + + P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENKEELHQALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +VE A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335 >gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71] gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 385 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 149/365 (40%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 19 VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITADGRWALTADEPERMAITDRR 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D F +LHG +GEDG +Q Sbjct: 79 TPNVEELAESDEGGVVLSVDPGSREVVYSEPGSVPKALGEVDAVFPMLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL +PY SG+LASA+ DK K+V S G+PV P ++ Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWANDPAAARKKIV 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P IKP +GGSS+GI + + + ++ H ++L+E + G E+ Sbjct: 199 DFAGEHGWPLFIKPARGGSSMGITKVDDLAGLDDAIAEAQ--RHDPKILVESLLRGREIE 256 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ ++PA + + EVQRLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDSAAGLVPAPLTDEQTAEVQRLAVAA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P M +G ++ EL+ +++ Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQESGVAYTELVDRLIQ 375 Query: 295 DASCL 299 A Sbjct: 376 AALTR 380 >gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC1087-00] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC 13950] Length = 381 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 154/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 21 VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAALAITDRR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 81 LPEVTAESGTELALSADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+LASA MDK +K++ ++ G+PV ++ + + P Sbjct: 141 LAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRARLRPEECQRLGLPVF 200 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + + + + H ++++E + G EL CGV+ Sbjct: 201 VKPARGGSSIGVSRVASWDQLDAAVAAAR--RHDPKVIVEAAIVGRELECGVLEMPDGTV 258 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ +I V++LA A +AI Sbjct: 259 EASALGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDEIADTVRQLAVRAFKAID 318 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 319 CQGLARVDFFLTEDG--PVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376 >gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564] Length = 347 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ SA+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335 >gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 348 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG VQ LE+L++PY + IL+S+++M Sbjct: 67 TNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ P + + ++ P +KP GSS+GI + Sbjct: 127 DKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGISKAE 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + ++ + + ++ + IE+ D + V FY Y+ K Sbjct: 187 DEAALRSAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I DI +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24] Length = 346 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGPDWENGDCR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG Q +LEL IPY + Sbjct: 66 PVVLSPDRSVHGLLVLEQGRYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE V G E+ C ++G+ + + + + Sbjct: 186 RPEDLATAVESAR--RYDTKVLIEAAVVGSEVGCAILGNDLDLIVGEVDRIALSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + V+PA IP + VQ A ++A+GCRG+SR D +V Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PGMT S +P M A AG E++ + A + Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344 >gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 348 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ + V + ++ + Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+++ Sbjct: 66 MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P P + + + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFTKPSNMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L + + ++L+EQ V E+ G++G+ + T V FY Y Sbjct: 186 ENQAELRKSLELAF--KYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PA+IP ++ ++ A LA +AIG +G+SR DF + ++ E+ Sbjct: 244 EAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G ++ +L+ +VE A Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLAYPDLIERLVELA 336 >gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6] Length = 346 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 149/339 (43%), Gaps = 48/339 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL G S+ER VS+ SG AL G + +DV Sbjct: 3 IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62 Query: 39 ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 R + +K D+ F LHG+ GEDG VQA +L+ I Sbjct: 63 AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKG 135 YT + ++SA+SMDK R+KQV + GV V R + + P +IKP G Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ + ++ + L + S +IE+++ G E TC V+ + P Sbjct: 183 GSSVGVTICHTEKDVEAGLALAFSLE--QSAVIEEFIQGREFTCAVIDGKAY-PIVEIHP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 K +Y + KY + + PA+I + E+Q LA A+G + R DFL Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ LE+N PGMTP S+ P+ AA G + L M+E Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338 >gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4] gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4] Length = 345 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 146/337 (43%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------AHLKP 51 + V+ GGIS E VS+ S + A LE ++ + + + L H +P Sbjct: 6 IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65 Query: 52 -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V S G+ + + P +KP + GSS G+ + + Sbjct: 126 SALCMDKSLAYLVTDSAGIATPNFWAGSANETVDAGKFTYPVFVKPARSGSSFGVTKVSR 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ +P L ++ ++LIE+ V+G E+ C V+G+ + + + + + Sbjct: 186 EEDLPSALADAA--QFDSKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFKIH 243 Query: 207 SSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 N T ++PA IP + VQ A ++A+GCRG++R D V Sbjct: 244 QEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE-DGTVML 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG SF E+L MV A Sbjct: 303 NEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMVSLA 339 >gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969] Length = 289 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 SL SG+A + L +AG +D L D F LHG GEDG +Q +LE Sbjct: 2 SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125 L +PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR + + Sbjct: 62 LGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFETLSPDELAARVAKLG 121 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+G+ + + L+++ H +LIE+++ G E T G++GD Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVEAF--RHDTDVLIEKWLSGPEFTVGILGDD 179 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 L I VP Y YE KY S + + P+ + ++ +++ LA A+QA+GC G R Sbjct: 180 VLPSIRIQVPGVF-YDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCSGWGR 238 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + D + LE+N PGMT S+ P A G SF +L+ ++ A Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILTLA 288 >gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 371 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 63/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+S+E VS S +AL++ + V + + ++ + Sbjct: 4 VAVIFGGVSTEHLVSCRSAFYVINALKELKYDVLPLGITKAGDWLPLLVEPEVLLTEGWE 63 Query: 46 ----------------LAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76 + P++ F +HG EDG +Q L + + Sbjct: 64 QAAYKAWHKKHARGLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTD 123 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLI 124 IPY SG+LASAL M+K+ +KQ+ ++ +PV P +V R + + ++ Sbjct: 124 IPYVGSGVLASALGMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVL 183 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---- 180 + P +KP GGSS+G + L + S ++L+EQY+ EL Sbjct: 184 TYPIFLKPASGGSSVGTFKAGNRSELVAALGEVS--KFDREILLEQYIPARELEVAVLGN 241 Query: 181 -VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + + +++ S+ LPA +P D+ + + LA A++ +G Sbjct: 242 LQPQAPMVGEILMQADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLG 301 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF D S ++ EIN PG T S++P+ A AG + L+ + A Sbjct: 302 CKGMARVDFFLDRCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALVDQLCRLA 358 >gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 357 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL+ + + + R +L++ Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV S+ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q L ++ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA +P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G + E++ +VE A R Sbjct: 307 QDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVEHGLARAGR 356 >gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 363 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 161/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNDEAQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLIVLA 347 >gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 364 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 40/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK--PD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + + L+ PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + L ++ ++ + IE+ D + V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PA+IP + + Q A A+ +G G+SR DF ++F E Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S++P + G + +L+ +++ Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335 >gi|160903079|ref|YP_001568660.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95] gi|190359202|sp|A9BI46|DDL_PETMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160360723|gb|ABX32337.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95] Length = 298 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 14/299 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59 + ++ GG S ERE+SL+S K +++ + G+K +D +D + + K AFNV+H Sbjct: 3 IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFINKIQNYKF--AFNVVH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G++GEDG + ++LE+L I YT S + DK + + ++ Sbjct: 61 GDYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNYIQMPQTTLTNKLILPP 120 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P++IKP K GSS G+ +I + L + ++L+++Y+ G E+T Sbjct: 121 FE----YPFIIKPRKSGSSKGVYIIHNENEYKFYLEKDLKEF--QEVLVQEYIKGREITI 174 Query: 180 GVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + +PK +FY YE KY++ + P I +++ + Q Sbjct: 175 SYIQKNEEFILLPILEIIPKKEFYDYEAKYTNGLTELKPQLNSPEKIIQKINEIGNHVMQ 234 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + + R D + +V+ LEIN PG+T +S P A AG SF EL+ ++++ Sbjct: 235 TLTFKDMFRIDAIL--KDDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINIIIKN 291 >gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 389 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 135/356 (37%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 VL GG S E +S + A++ F V + + + VLA PD Sbjct: 29 VLFGGRSGEHPISCITAAGVLRAIDRDRFDVVAVGITQGGKWVLASTDPDEVVTSGDDLP 88 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + +LHG FGEDG VQ +LEL ++ Sbjct: 89 HVADNGTEVLLPFASGDNEVRVIRDGVLESVGPVDVVLPLLHGPFGEDGTVQGMLELADL 148 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYV 129 Y G+L SA+ MDK K V G+PV P V + P Sbjct: 149 RYVGVGVLGSAVGMDKHYMKLVFEGHGLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVF 208 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSSLGI + + + ++ H +++IE + G E+ C V+G Sbjct: 209 VKPTRAGSSLGISKVSDVGDLDRAMAEAL--KHDPKVIIEAGIVGREIECAVLGGHGDTP 266 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++P + PA++ V+ +A A A+G Sbjct: 267 ARASLPGEITMTGSAHEFYDFEAKYLDDASAQLSCPAELDETTTATVREVAVRAFDAVGG 326 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+SR D V EIN PG TP+S++P M +G S+ EL+ +++ A Sbjct: 327 EGLSRVDVFV-QEDGAVVVNEINTMPGFTPISMYPRMWERSGVSYTELISELIDLA 381 >gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B] Length = 319 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 148/309 (47%), Gaps = 13/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GGISSEREVSL SG+ AL G +V D L D AF LHG Sbjct: 12 VVVLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAYDAAFIALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ +L + +PYT G+ ASA++MDK +K + + G+ V + + D+ Sbjct: 72 TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131 Query: 121 QHLISPP------YVIKPLKGGSSLGIIVIK----KDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + V+KP GSS+G+ + S+ L ++ + ++L+E+ Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDA-AEVLVEE 190 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ G E T ++ +L V EI P Y ++ KY + + PAK+P K + Sbjct: 191 YIHGREFTVAILDGKALPVIEICAP-EGSYDFQNKYYTDVVRYECPAKLPEASAKALAAA 249 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +GCRG SR D + LEIN PGMTP S+ P A G S+ +L L Sbjct: 250 CEKAFAVLGCRGWSRVD-ALERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCL 308 Query: 291 WMVEDASCL 299 ++ A Sbjct: 309 RVLGLARTD 317 >gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37] Length = 345 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A +L+ ++ I + +S L Sbjct: 6 VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ DL VLHG GEDG +Q +LEL IPY + + Sbjct: 66 AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + V S G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ +P + + ++LIE+ V G E+ C ++G+ V + + + + Sbjct: 186 EEELPSAVETAR--QFDSKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243 Query: 207 SS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 NST + PA I + VQ A ++A+GCRG+SR D + Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVDMFL-KEDGTIVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M A AG ++ +V A Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAGLPLGAVIDQIVSLA 339 >gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a] gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a] Length = 367 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 156/352 (44%), Gaps = 60/352 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP------ 51 A+L GG S+E +S S AL+ + V+ + +D S V L P Sbjct: 11 ALLFGGRSTEHAISCVSAGGVLRALDPDVYDVALVGIDPSGRWVFMPDAKALTPADGALP 70 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LE+ Sbjct: 71 QVTASRGTSVVLAPDPTAARWYPRDGGESIQGPLGDVDVVFPLLHGPFGEDGTIQGLLEM 130 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIK 131 +PY SG+ ASA +MDK K ++ + G+PV P +V Q + P +K Sbjct: 131 AGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYAVVRAGQTLSEADQDRLGLPVFVK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + + + ++L+E + G E+ CGV+G + Sbjct: 191 PARGGSSIGISRVDAWADLDTAVKTAR--ANDPKVLVEAAITGREIECGVLGRLDGPGAQ 248 Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +VP FY +E KY S + +PA++ V+++A A +A+ C G++ Sbjct: 249 ASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSPSALARVRQVAVAAFEALDCAGLA 308 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D P V E+N PG TP S+FP M A +G ++ +L+ +V A Sbjct: 309 RVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAASGITYPDLVDRLVRLA 359 >gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative [Octadecabacter antarcticus 307] Length = 277 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 108/276 (39%), Positives = 157/276 (56%), Gaps = 2/276 (0%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 AGF V +ID + L +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+LA Sbjct: 2 RTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA++MDK ++K++ + G+P S+L + +++ H+++PPYV+KP GSS+GI ++ + Sbjct: 62 SAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVME 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 P + + + L G S +T + +Y Y KY Sbjct: 122 GDRPPELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVVDGWYDYAAKY 181 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 STH +PA +P DI + A AH +GCRG+SR+D+ +D + LE N Sbjct: 182 EIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDESRGLDGLILLETNT 241 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R Sbjct: 242 QPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277 >gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985] Length = 357 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 146/344 (42%), Gaps = 53/344 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51 VL GG+S E E+S S + + L+ + + + + + VL P Sbjct: 9 VLFGGVSGEHEISCLSAASVLAQLDPSRYTAVPVGITKEGDWVLDRRSPEELGDKAGGLP 68 Query: 52 --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F VLHG +GEDG VQ + EL +PY Sbjct: 69 QVDRTAPRVALAVGRAGAGELRFVGGELAAQVDVVFPVLHGPYGEDGTVQGLFELANLPY 128 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKG 135 G+ ASA MDK K ++ G+PV P ++ +S P +KP +G Sbjct: 129 AGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPVFVKPARG 188 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEI 192 GSSLG++ + + + +P L + + ++L+E + G E+ C Sbjct: 189 GSSLGVVKVDRWEDLPHALATAR--KYDPKVLVEAGIAGREIECAVLEFPDGRVAAGALG 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + Y +E KY + + +PAK+ + E++ LA A + + C G+SR DF Sbjct: 247 EIVVPETYDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGLSRVDFFLT- 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T S++P+M AG + LL +++ A Sbjct: 306 QDGRPVVNELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349 >gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 323 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL G +V++ DVD S+ L +PD +LHG Sbjct: 13 VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ ILELL +PY + A ++ DK +K VV+ GV S+ + T Sbjct: 73 GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP + GS+LG V++ + +P + S++ +GD L+E++V Sbjct: 133 AGAVMAALVDRLGLPLMVKPTRSGSALGCTVVRTAEQLPAAM--VSAFAYGDVALLERFV 190 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ V+ D S P Y Y +Y++ + V PA + ++ EV R Sbjct: 191 PGMEVAVPVVDDGSGARALPAVAIQPDGGVYDYTARYTAGATEFVTPAPLSEELAAEVAR 250 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A LAH+ +G R +SRSD + D +V++LE+NV PG T S P AG ++ Sbjct: 251 VALLAHEVLGLRDVSRSDLIID-HEGRVWFLEVNVAPGFTETSTVPLAIQAAGLDLGKVC 309 Query: 290 LWMVEDASCL 299 MV+ A+ Sbjct: 310 ASMVQAAAAR 319 >gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20] Length = 362 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 40/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + + A PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + L ++ ++ + IE+ D + V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PA+IP + + Q A A+ +G G+SR DF ++F E Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S++P + G + +L+ +++ Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335 >gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10] Length = 358 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 40/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52 + +L GG S+E EVSL S + +A+ ++V + + + + A PD Sbjct: 3 IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 ALTNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P +KP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + L ++ ++ + IE+ D + V FY Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PA+IP + + Q A A+ +G G+SR DF ++F E Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S++P + G + +L+ +++ Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335 >gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146] Length = 300 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 19/305 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL SG+A + L+ AG D R L + F L+G Sbjct: 5 VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113 +Q +LE L++PYT S ++ASAL+MDK+RSKQV + G+PV P + + Sbjct: 65 RGS----LQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120 Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T+ + + P ++KP + GSS+G+ + + L + H D++LIE++ Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPAL--VEALRHDDEILIEKW 178 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T +GD I + + Y YE+KY S + + P+ + + + + L Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADAF-YDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A++A+GC G R D + D S + LE N PG S+ P A AG SF L++ Sbjct: 238 RRAYKALGCSGWGRVDVIQDT-SGEFCLLEANTAPG--SHSLTPMAACQAGMSFSPLVVR 294 Query: 292 MVEDA 296 ++E A Sbjct: 295 ILELA 299 >gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1] Length = 391 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 149/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A A++ + V I + L +P Sbjct: 25 VAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAITDRK 84 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 85 VPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 144 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119 +LEL +PY +G+LASA+ DK K+V S G+PV P +V D Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARERIV 204 Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P IKP +GGSS+GI + + + + ++ H + L+E + G E+ Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEAR--RHDPKFLVESLLRGREIE 262 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ ++PA + + EV+RLA A Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDSAAGLVPAPLTEEQTAEVRRLAVAA 322 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G+ R+DF EIN PG TP+S++P M +G + EL+ +++ Sbjct: 323 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLIQ 381 Query: 295 DA 296 A Sbjct: 382 AA 383 >gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM 13280] Length = 325 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 171/307 (55%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GGIS ERE+SL+SGK A+AL +AG+ V +D +R L + D+AF L Sbjct: 17 VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIAL 76 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG+ Q ILE L IPYT S LAS ++MDK SK + G+PV PS+ R M Sbjct: 77 HGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADM 136 Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 S I +KP+ GSS GI ++K + + + HGD++++E V G Sbjct: 137 PSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAIELAF--EHGDKVMVEHRVFG 194 Query: 175 IELTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +E + +GD + +S+FY E+KY+ N H +PA++P D+Y +VQ Sbjct: 195 VECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQD 254 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH+A+G GISR+D + LE N PGMT S+ P+ A +AG +F +L Sbjct: 255 IACRAHEALGLFGISRTDVIVTEDG--PIILETNNIPGMTSESLVPDEARHAGIAFSDLC 312 Query: 290 LWMVEDA 296 +VE A Sbjct: 313 AELVELA 319 >gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 347 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335 >gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 372 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 30 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ + + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 90 MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 150 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 210 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A +A +AIG G+SR DF + ++F E+ Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 360 >gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325] Length = 355 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHL------- 49 + ++ GG S+E +SL + K+ +A++ + V I + + Sbjct: 6 IGIVYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWAKGEQIKSEIKDQNEL 65 Query: 50 ------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 K DL F VLHG GEDG +Q LE+++I Y + +L+SA M Sbjct: 66 RFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGFLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P +T + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVNDNLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + ++ +++IEQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGIEEAL--KFDKRIVIEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISTT 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I ++Y E +++A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRAISGSGLVRADFFYTKE-GEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A S+ E++ + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYPEVIEELFRLA 341 >gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101] gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101] Length = 323 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG L+ + +I + D Sbjct: 4 IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG GEDGL+QA EL+ +P + SAL+ +K V+ Sbjct: 64 SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N+ + I P +KP K GSS GI +K + +P+ + Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELPIAIEV 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + ++++IE ++DG E++ GV+ V +DF+ YE K S Sbjct: 184 AY--KEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEIVSDNDFFDYEAK-YEGKSQE 240 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ ++V A A++ + +G SRS+F+ + + + LE+N PG+T S+ Sbjct: 241 ITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTESL 298 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S +L +E + Sbjct: 299 IPQQAKAAGISLEDLFTNAIELS 321 >gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium 2_1_46FAA] Length = 350 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 158/345 (45%), Gaps = 55/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S+ER+VSLSSG L++ G V +D Sbjct: 3 IIVLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGL 62 Query: 38 -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG+ GE+G +QA Sbjct: 63 EIAEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129 ++L I YT L SAL+MDK +KQ+ GVP ++ T ++ +S P V Sbjct: 123 DILGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ + + + + +S + D+++IE Y+ G E G++ +L V Sbjct: 183 VKPCSGGSSIGVYIPQTEAEYKTAVEESF--KYEDEIIIEPYIKGREFAVGIIDGKALPV 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PKS+F+ Y KY + + + PA I I K +Q A A+ SR+DFL Sbjct: 241 I-EIIPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +++ LE+N PGMT S+ P+ A AG S+ +L +++ Sbjct: 300 LTE-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQ 343 >gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217] Length = 330 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 32/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG SSE +S+ SG L+ + + V I + D Sbjct: 6 IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDG++QA L+LL IP T +AL+ +K V+ Sbjct: 66 SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ + L+N+ I P +K K GSS G+ + + + + Sbjct: 126 KAYGIKTATNYLLNKGDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEELEGAIEV 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213 + D+++IE +++G E++ GV+ + V +DF+ Y+ K S Sbjct: 186 AF--KEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEIVSDNDFFDYQAK-YEGKSQE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + + VQR A + + +G++R++F+F + + +LE+N PG++P SI Sbjct: 243 ITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIF--HNGEPHFLEVNTTPGLSPASI 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ A AG S EL ++E A R Sbjct: 301 IPQQAKVAGISLPELFDNVIEQAMRDR 327 >gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 155/348 (44%), Gaps = 52/348 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------VDRSV 42 + VL GG+S ER VSLS+G A AL G +V+ +D Sbjct: 3 IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62 Query: 43 GLVLAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74 ++ PDL F LHG+ GEDG VQA +L Sbjct: 63 HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132 + IPYT SG L SA++MDK +K++V+ + P V+KP Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVADVVSTPGWKTVSYTADDIDGLVETARLPLVVKP 182 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 + GSS+G+ + + + L + G + ++EQYV G EL ++ D +L Sbjct: 183 VASGSSIGVSIAHTAEELRTALTEGL--ALGGRTVLEQYVKGRELQVAILEDKALPSI-E 239 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +PK FY YE KY + V PA I + ++++ A ++ +G SR+DF+ D Sbjct: 240 IIPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFILDA 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + ++LEIN PGMTP S+ P+ AA G + L +V+ + R Sbjct: 300 -DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346 >gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 335 >gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 +AL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S] gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S] Length = 368 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 MPTVDAGGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L IPY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+GI + + + +H ++++E + G E+ CGV+ DV Sbjct: 188 VKPARGGSSIGITRVADWSQFDAAVAVAR--SHDPKVIVESAIVGREVECGVLEFPDGDV 245 Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V + Y ++ KY +PAK+ D+ ++++ LA A +A+ Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M AG + L+ +V+ A Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363 >gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707] Length = 368 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 MPTVDADGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L IPY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+GI + + + +H ++++E + G E+ CGV+ DV Sbjct: 188 VKPARGGSSIGITRVADWSQFDAAVAVAR--SHDPKVIVESAIVGREVECGVLEFPDGDV 245 Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V + Y ++ KY +PAK+ D+ ++++ LA A +A+ Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M AG + L+ +V+ A Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363 >gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato Max13] gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40] gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1] Length = 363 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE EVSL S + +A++ + ++ I VD+ + Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64 Query: 46 ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77 + KP D+ F ++HG FGEDG +Q +L +L + Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133 P+ + +LASA MDK +K+++ G+ V P +++NR + +S P +KP Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G V K + + +LLIEQ + G E+ C V+G+ V+ Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNDEPQVSVCG 242 Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ Y + +PA++P D+ +V+ +A A++ +GC G+SR DF Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R++ E+N PG T +S++P++ +G S+ EL+ ++ A Sbjct: 303 TGA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347 >gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11] gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11] Length = 287 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 162/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKVPKAYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEKIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKRLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum] gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 346 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 135/339 (39%), Gaps = 45/339 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 V+ GG S E +S+ S + A L+ A ++ I + S L Sbjct: 7 GVIFGGCSEEHPISVKSAQEVARHLDPARYEPFYIGITTSGAWKLCDGPDADWENGRCRP 66 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+ VLHG GEDG +Q +LEL IPY + + Sbjct: 67 ATLSPDRSARGLLVLEYGRYETISLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQS 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V + G+ V + P +KP + GSS G+ + Sbjct: 127 SALCMDKSLTYTVARAAGIATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSG 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 +P L + + ++L+E+ V G E+ C ++G+ + + + + + Sbjct: 187 RDELPGALDVAR--RYDSKVLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIH 244 Query: 207 SSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 +PA I + VQ A A++A+GCRG+SR D V Sbjct: 245 QEDEPERGSDNSSVTVPAAISQEARALVQETAKAAYRALGCRGLSRVDMFLTA-DGDVVL 303 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PGMT S +P M A AG F E++ +V A Sbjct: 304 NEVNTLPGMTSYSRYPRMMAAAGLPFAEVIDRIVALALT 342 >gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72] Length = 347 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692] Length = 302 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 7/296 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61 ++ GG S+ER+VS+S GKA A+AL G +V D + + + D F LHG Sbjct: 5 LIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLHGA 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS 120 GEDGL+QA+L+ L PY SG S L++DK +K + + G+ + + + Sbjct: 65 PGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREENW 124 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P IKP +GGSSLG+ + + + L S +L+E+ V G E+TC Sbjct: 125 QPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQL--SQQLQFSSAVLLEEAVTGKEVTCA 182 Query: 181 VMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+G+ +L + ++ F+ Y KY+ + + PA + + +Q+ A AH+ +G Sbjct: 183 VVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRILG 242 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G SR+DF+ + F LE N PGMTP S+ P+ AA G F LL +++ Sbjct: 243 LTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQL 296 >gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2] Length = 351 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 40/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL S + +A+ ++V + + R + Sbjct: 3 IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62 Query: 46 ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P IKP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + L ++ ++ + IE+ D + V FY Sbjct: 183 TKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PA+IP + + Q A A+ +G G+SR DF ++F E Sbjct: 243 YNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S++P + G + +L+ +++ Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335 >gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1] Length = 287 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 103/296 (34%), Positives = 162/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIRVPKAYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99] Length = 356 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 46/341 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49 ++ GG S+E +VS+ + + +A++ A + + I + Sbjct: 7 CIIYGGKSAEHDVSILTAQNVLNAIDKARYHIDIIYITNDGQWKKMDNITEDITDVEALR 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 67 IDDVPTSDISAMLTQSSQGGRYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASS 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140 SMDK+ KQ+ + G+P P + R + ++ P +KP GSS+G Sbjct: 127 SMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198 I + + ++ + ++ +L+IEQ VD E+ V+G+ + T V Sbjct: 187 ISKCEDEAALIKGIEEAF--QFDRKLVIEQGVDAREIEVAVLGNDYPETTWPGEVVKDVA 244 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY +PA + D+ ++ +A A +A C G+ R+DF +++ Sbjct: 245 FYDYKSKYKDGKVKLAIPADLDQDVQMTLRNMAVEAFKATDCSGLLRADFFVTA-DNQIY 303 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 E N PG T S++P++ G S+ EL+ +++ A Sbjct: 304 INETNAMPGFTAYSMYPKLWENMGVSYSELITKLIDLAKAR 344 >gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 356 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 48/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53 + ++ GG S+E +VS+ + + +A+ ++V I + K D+ Sbjct: 6 ICIIYGGKSAEHDVSILTAQNVLNAINKDDYQVDIIYITNDGAW---KKKDDITENVEDV 62 Query: 54 ----------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 F +LHG GEDG +Q + E+L++PY +G+L Sbjct: 63 DSLRLEEVEEGEISNLLTNSSSGQPYAAVFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVL 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136 A++ +MDK+ KQ+ + G+P P + R + + + P +KP G Sbjct: 123 AASSTMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYQSNILKLVKDKLEFPVFVKPANLG 182 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI ++ + + ++ ++ + IE+ V Sbjct: 183 SSVGISKCNNEEELKSGIEEAFQFDRKLVIEQGIEAREIEVAVLGNDYPETTQPGEVVKD 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 FY Y+ KY +PA++ ++ ++ +A A +A C G+ R+DF + Sbjct: 243 VAFYDYKSKYLDGKVQLSIPAELDSEVQTTLRNMAAEAFKATDCSGLLRADFFVTE-DNQ 301 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E N PG T S++P + G S+ +L+ ++E A Sbjct: 302 IFINETNAMPGFTQYSMYPSLWENMGLSYADLITKLIELA 341 >gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 368 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 159/355 (44%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S S + +AL+ ++V + + R+ VL P Sbjct: 9 VAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGSDPAELAISARR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTAESGAAIMLNADPSHSGLMVLDATAGPRALADVDVVFPVLHGAYGEDGSIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ ++ G+P+ P +++ + + P + Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYVVLRSGMTLTEQDKQRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MG 183 KP + GSS GI I + + + ++L+E V G E+ CGV + Sbjct: 189 KPSRAGSSFGITKISDWAELDAAVATARQI--DSKVLVEAAVVGREIECGVLEGEAGGVP 246 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +AS+ V + DFY +E KY + +PA + + ++VQ A A A+ C Sbjct: 247 EASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGLSERVTRQVQEYAVRAFTALDCA 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R+DF P ++ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 307 GLARADFFVTPELD-IYLNEINTMPGFTPSSMFPRMWAASGLEYPKLVNRLIRTA 360 >gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] Length = 313 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 166/312 (53%), Gaps = 16/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A++ GG+SSER+VSL+ GK +AL+ A ++V + D + ++ D AF LH Sbjct: 6 VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLARLVQEAPGIDTAFVNLH 65 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q +L+LL +PY SG+L SAL+M+K+ +K+V G+PV P +V+ Sbjct: 66 GVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSENRDA 125 Query: 120 -------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGSS+G+ ++K+ + + ++ HG +L+E Y+ Sbjct: 126 DGSFLDAHADALGFPLVVKPACGGSSIGMSIVKQVSELAPAVDKAL--AHGPDVLLEAYI 183 Query: 173 DGIELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G ELT D +P F+ YE KY+ ++ + PA +P D+ V+ Sbjct: 184 QGRELTGGVIGNDDPEPLPVVEIIPGDGYGFFDYEAKYTPGATSEICPAPVPEDLSARVR 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH A+ C+G SR+D + +F LE N PGM P S+ P A AG +F +L Sbjct: 244 DYACRAHSALFCKGYSRTDMIATDTD--LFVLETNTIPGMGPTSLLPLAAKAAGMAFGDL 301 Query: 289 LLWMVEDASCLR 300 L ++ + R Sbjct: 302 LDRLISLSLEKR 313 >gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633] Length = 359 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 53/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + V+ GG S+E ++S+ + + + ++V + ++R + Sbjct: 5 IIVVYGGKSAEHDISILTAFSIIKEIYFDYYEVQPVYINRKGEWLKGEPLTGPVAFSEAL 64 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L + + F VLHG GEDG +Q + E++++P Sbjct: 65 RLEVSQEAHFATSEGEVSTGVLVTPYDLKEEEC-VVFPVLHGPNGEDGTIQGLFEMMDVP 123 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129 Y G+LASA MDK+ SKQ+ G+P P + N+ + P Sbjct: 124 YVGCGVLASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVF 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + ++++ ++ + IE +A+ V Sbjct: 184 VKPANMGSSVGISKAENREELTTAIVEALKYDRRIVVEQGIEAREIECAVLGNDEANTSV 243 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 V S FY Y KY + T +PA+I ++ +V+ + A +AI G++R DF Sbjct: 244 VGEIVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCDFF 303 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T S++P + G S+++L+ +++ A Sbjct: 304 LTE-TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQLA 349 >gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 366 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG+SSE EVS S L+ +++ I + + + Sbjct: 11 VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKDGRWLYTEATSAQMADGSWE 70 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + ++ D+ VLHG +GEDG VQ +LEL IP Sbjct: 71 ELPGNMPCVVSPDRADHGLILFTPAGQVEKVRADVVIPVLHGLWGEDGTVQGLLELAGIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ ++ + P Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIECDPEGVCDGVIAKLGWPIF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + +++ E +VDG E+ C V+G Sbjct: 191 VKPANAGSSVGITKAHDRTELKEAIRLAL--ANDRKVVFEAFVDGHEVECAVIGSDPAVS 248 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PAK+P + EV+ A +A+ A+GC G++R D Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPAKLPEEKLDEVKTYAAMAYTALGCEGLARCD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++ A Sbjct: 309 FFVEKNTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357 >gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 344 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 142/334 (42%), Gaps = 44/334 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + VL GG S E VS+ S + A L+ ++ I + R L Sbjct: 6 IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65 Query: 49 ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ D+ VLHG FGEDG VQ + EL + Y + + Sbjct: 66 AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA+ MDK + + S+ G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 +P + + + ++LIE+ V G E+ C V+GD + + + + Sbjct: 186 PDDLPAAIEAAR--EYDSKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243 Query: 207 SSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 NST ++PA IP + VQ+ A ++A+GC G++R D P +V Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M + AG S E+L +V Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336 >gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33] Length = 287 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I V + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIRVPKAYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228] Length = 350 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+ GG S+E E+SL S ++ +A + + + + +D+ + Sbjct: 8 IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67 Query: 46 ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 LK DL F VLHG FGEDG +Q LE L+I Y + +SA+ Sbjct: 68 VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRF----------TMDSQHLISPPYVIKPLKGGSSL 139 MDK KQ+ + +P + N+ P+ +KP GSS+ Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPK 196 GI +K +S L + + +L+IE+ + EL V+ + + + Sbjct: 188 GINQVKDFKSFVKALAEGF--KYDLKLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +DFY Y+ KY + ++PA + +++ ++ A QAIG G+SR DF D Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + EIN PG T S++P + G SF E+L +V+ Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343 >gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp. Ellin185] Length = 373 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 147/359 (40%), Gaps = 66/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S ++ +A++ + V I + ++ VL P Sbjct: 10 VAVVFGGRSSEHAISCATAAGVLAAIDRERYDVVPIGISKAGQWVLMPDDPSVLAIQGKK 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q +LE Sbjct: 70 LPEVTNDAGREVVIAPSPDQHDILVLDAGQTPQALTSVDVVLPLLHGPFGEDGTLQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 L ++ Y SG+ ASA+ MDK K V + G+PV P +++ + Sbjct: 130 LADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYVVITDKQWRRDKDAAMASLTPLR 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS+GI + + + + +++IE + G E+ CGV+ Sbjct: 190 YPVFVKPARAGSSVGISKVDSRDQLEAAIELAR--ESDPKVVIEAGIVGREVECGVLEGH 247 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQA 237 D+ + E + + + PA + + ++ L+ A A Sbjct: 248 GSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRLACPADVSAEDTARIKELSIKAFDA 307 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G++R D+ + +F EIN PG TPVS+FP + +G + +L+ ++E A Sbjct: 308 AGCEGLARVDWFYTAE-GTLFLNEINTLPGFTPVSMFPAVWRESGLDYTDLITDLIELA 365 >gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 353 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47 +AV+ GG S+E VS S A + L+ F+V I + R V+ Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 48 HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 + P D+ F +LHG FGEDG +Q + EL +PY Sbjct: 67 EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P ++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + + P + + +++L+E + G E+ GV+ A + Sbjct: 187 SSIGVSKVNSWEEFPAAVDLALED--DEKILVEPEIVGQEVEIGVLHYADGTLLASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR DF Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 305 FVTEES--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353 >gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AVL GG S E VS+ S A+ ++ ++ I + +S Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 45 -------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ K D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVICMDKALAYTVVKNAGITVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 K + + + ++ + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 186 KAEELQAAIEEAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ +++Q A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ E+L ++E + Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELS 340 >gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100] Length = 379 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 100/353 (28%), Positives = 151/353 (42%), Gaps = 60/353 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49 +AVL GG SSE VS S A L+ ++V + + V Sbjct: 26 VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWVPGTVDTSELRADDRE 85 Query: 50 KP-----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 P D+ F VLHG GEDG +Q + EL Sbjct: 86 MPSVRDRGEHIQLVLGAQTGELRYVSGGHAGRTYAHVDVIFPVLHGQNGEDGTIQGLFEL 145 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIK 131 IPY +G+LASA MDK +K++ GVP ++ T D Q + P +K Sbjct: 146 AGIPYVGNGVLASAAGMDKEYTKRLAKQAGVPCGEELILAENRELTEDEQQRLGLPVFVK 205 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + + +H +++++E + G E+ CGV+ V Sbjct: 206 PARGGSSIGISKVDTWEDFAHAVEIAF--DHDNKVIVEAMIHGREVECGVLQYPEGSVIA 263 Query: 192 IAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A FY ++ KY T +PA I + EV+RLA +A+ C G+ Sbjct: 264 SAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGL 323 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R DF S +V EIN PG TP+S++P+M G + +LL ++ A Sbjct: 324 ARVDFFVT-DSGEVILNEINTLPGFTPISMYPQMFIAGGMGYPQLLDILIARA 375 >gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626] Length = 324 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58 + VL GG S E E+SL SG+ AL+ AGF+ V +D+ L D+AF + Sbjct: 11 VIVLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG++GEDG +Q +LE+L IPYT SG+LASA+ +K SK + G+PV I V+ T Sbjct: 71 HGHYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTK 130 Query: 119 DSQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +KP GSS G+ + + + + GD++LIE+ Sbjct: 131 FTDEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQLLQAIEDAG--AQGDRVLIEEC 188 Query: 172 VDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 V G E+T V+G+ V + +FYS E+K + H+ PA++ D+Y Q Sbjct: 189 VVGTEITVPVIGNDHPTALPIVEIVFEDEFYSIEVKAEPASLHHITPARLAPDVYARAQE 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH+A+GCRG+SRSDF+ LE N+ PGMT S+ P+ A G F EL Sbjct: 249 LAICAHKALGCRGVSRSDFIV-KADGTPVILETNMIPGMTERSLIPDSARTDGIPFSELC 307 Query: 290 LWMVEDA 296 +E A Sbjct: 308 TRFIEYA 314 >gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501] gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68] gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039] Length = 358 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V I + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT 5713] gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 378 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ + + + +KP + GS Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192 S+GI ++ ++ L +++ L+ E + E+ C V+G+ + I Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 247 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVDE 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 307 -NDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349 >gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola] Length = 306 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 159/303 (52%), Gaps = 13/303 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GGI SER++S+ SG A +L +GF ID + L D A+ LHG Sbjct: 5 IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111 GEDG +Q ILE L IPYT SGI++SA+S+DK R+K + S + S Sbjct: 65 TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P VIKP GSS+GI ++ + + + ++N+ + ++IE++ Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G E T ++ L + K++FY Y KY ++ ++ P+ + +E++++ Sbjct: 183 LKGTEYTVSILNKKVLPPI-KIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A ++GC+G R D + D K + LEIN PGMT S+ P + SF L+L Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILK 300 Query: 292 MVE 294 +++ Sbjct: 301 ILK 303 >gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEKLIALA 338 >gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440] Length = 326 Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 18 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L ++PY AS + DK +K V+ +P + + Sbjct: 78 GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ ++P + + + L+E+Y+ Sbjct: 138 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDSAALPAAM--VGCFAYDSTALVERYL 195 Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ++ V+ VP++ Y Y +Y++ +T PA++ ++ + V Sbjct: 196 SGTDVAVSVIDLGEGPQALPAVEIVPRNGVYDYAARYTAGRTTWHTPARLTSEVAEAVAG 255 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH A+G R +SR D + D + L +NV PGMT S+ P A AG F ++ Sbjct: 256 LAVAAHTALGLRDLSRVDLIVDA-DGQPHVLGVNVAPGMTETSLLPLAAQAAGLDFGRMI 314 Query: 290 LWMVEDASCL 299 +V A+ Sbjct: 315 GTLVSQAAAR 324 >gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905] gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905] Length = 381 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 46/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49 + +L GG S+E EVSLS+ +A AL ++V I + + L Sbjct: 27 IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86 Query: 50 KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F +LHG GEDG VQ +LE+L +PY +G+ Sbjct: 87 QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 LAS+ MDK+ KQ+ G+P P R + ++ P +KP Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + ++ + IEL + V P Sbjct: 207 GSSVGISKATSRDELKKAIEVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEIKP 266 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++FY Y+ KY+ ++ ++PA++P + ++ LA A +AI G+ R+DF Sbjct: 267 VTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRADFFVTA-DH 325 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ E+N PG TPVS++P + + S+ EL+ ++ A Sbjct: 326 SVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 366 >gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A++ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP G S+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR +F + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335 >gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 388 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 144/362 (39%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + VL P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGRWVLVEDDPAALELSDSR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVQITTDGLGQGALSAPLGGGELTVLGPTGPRVLGQIDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ + Y G+LASA MDK +K ++ + G+ P ++V +S Sbjct: 141 MMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEVILDACRSLS 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI +++ + +P + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVERPEDLPGAIEAARAI--DPKVLVESGIVGREVEVAVLEGR 258 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234 D +A P V PA+I + + A A Sbjct: 259 GDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVAMVCPARIGPEERALIMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF + EIN PG TP S++P M +G + +L+ ++E Sbjct: 319 FEAVGCEGLARVDFFLTEA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTDLVSELIE 377 Query: 295 DA 296 A Sbjct: 378 LA 379 >gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20] Length = 388 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRNRYEVLPVGITPEGQWLLVEDDPAALELSDNR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEVLGQVDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ IPY G+LASA MDK +K ++ + G+ P ++V ++ Sbjct: 141 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLAGAIKAARAV--DPKVLVESGIVGREVEVAVLQGR 258 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234 D +A P V PA+I + + A A Sbjct: 259 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALLMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF + EIN PG TP S++P M +G + EL+ ++E Sbjct: 319 FEALGCEGLARVDFFLTEA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 377 Query: 295 DASCL 299 A Sbjct: 378 LAVAR 382 >gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 363 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 149/338 (44%), Gaps = 46/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S+E EVS+ S + A+ ++V + + + V L KP+ Sbjct: 11 IILLYGGKSAEHEVSVLSAFSVLQAIYYEYYQVQLVFISKKGEWVKGPLLTEKPESKDIL 70 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + F +LHG GEDG +Q LE + +PY +G++ SA Sbjct: 71 QLTWKGEQASAKEIHPSEIKQEEAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSA 130 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSL 139 MDK+ +K ++ + G+P P + V + + + P +KP GSS+ Sbjct: 131 CGMDKIMTKYILQAAGIPQVPYVPVLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSV 190 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKS 197 GI + + + L ++ + + +IEQ ++ E+ ++G+ + T V Sbjct: 191 GISKAENREELQHALEEAY--QYDTRAVIEQGIEAREIEVAILGNEDVRTTMAGEIVKDV 248 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y KY +PA +P ++ + Q A A+ +G G+SR DF ++ Sbjct: 249 AFYDYNSKYIDNKIEMQIPASVPDEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTSK-NEL 307 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 F E+N PG T S++P + G + +L+ +++ Sbjct: 308 FLNELNTMPGFTQFSMYPSLWEQTGLKYGDLIEELIQL 345 >gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 384 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 93/359 (25%), Positives = 152/359 (42%), Gaps = 67/359 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S+E +S S A + L+ + V + + R VLA Sbjct: 10 IAVVFGGRSAEHSISCVSAGAVLAGLDPDRYDVVPVGIARDGRWVLAEPAQRLAIADGEL 69 Query: 49 ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+ F VLHG +GEDG +Q +LE+ Sbjct: 70 PEVTGGTAVSLVGDPGGRGLAVLEPAAGVASALTEVDVVFPVLHGAYGEDGTIQGLLEMS 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124 IPY SG+ ASA SMDK +K+++++ G+P +++ + + Sbjct: 130 GIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDDADRERL 189 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----- 179 P +KP + GSS+GI + P + ++S ++++E V G E+ C Sbjct: 190 GLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAASV--DPKVIVEAAVPGREVECGVLAR 247 Query: 180 -GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ASL P +++Y + KY +PA + + + VQ A A A+ Sbjct: 248 PDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETARKAFLAL 307 Query: 239 GCRGISRSDFLF-DPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 CRG++R DF ++ E+N PG TP+S++P M A G F L+ +VE Sbjct: 308 DCRGLARVDFFLGTGPDGADRLVVNEVNTMPGFTPISMYPRMWAATGVDFAALVDRLVE 366 >gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A] Length = 350 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + +L GG S E VS++S +A AL + V I + R+ + Sbjct: 5 IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64 Query: 46 --------LAHL-------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L + D+ F VLHG GEDG +Q +L++++ P+ + + Sbjct: 65 KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKP 132 L SA+ MDK+ K + S G P ++ D + + P IKP Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+G+ + + + L ++S+++ + +E V Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAASYDNRIIIEEGIIARELECGVLGNDIPKASVVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +SDFY Y+ KY +S +PA++P I +++Q++A A I RG+SR DF + Sbjct: 245 ITFESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDFFYIE 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++K+F EIN PG T S++PE+ G F EL+ ++E A Sbjct: 305 GTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348 >gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118] gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118] Length = 378 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 68 DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ + + + +KP + GS Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192 S+GI ++ ++ L +++ L+ E + E+ C V+G+ + I Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 247 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD- 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 306 KNDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349 >gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058] Length = 353 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 382 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ + VS Sbjct: 12 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L LA +K D+ + V+HGN GEDG VQ + LL P+ SG Sbjct: 72 DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 + +S +S DK +K++++ G+ + + + +KP + GS Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 191 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192 S+GI ++ ++ L +++ L+ E + E+ C V+G+ + I Sbjct: 192 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 250 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + +P K+P + KE+Q+++ A +A+ RG++R DFL D Sbjct: 251 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVDE 310 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ +G S+ EL+ +++ A Sbjct: 311 -NDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 353 >gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 349 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 51/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLK----- 50 +AV+ GG SSE EVSL S A L+ + V +I + R + L +K Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F VLHG GEDG +Q + E+ IPY Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLK 134 + AS++ +DK + ++V G V SI ++ + P +KP + Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI + + + + ++++E+ ++G E+ C + D + + Sbjct: 186 EGSSIGITKAENHSDLMGGIEAALKL--DGKVVLEENIEGFEVGCAILGNDDLIVGTVDE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + F+ + KY+ NS LPA+I D+ + ++ + ++A+GC G+SR D D Sbjct: 244 IEVPNGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD- 302 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + ++ + E+N PG T S FP M +AG ++R++L +++ Sbjct: 303 KNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDL 345 >gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus pneumoniae GA41317] Length = 347 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35 + +L GG S+EREVS+ S ++ A+ F V Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64 Query: 36 -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ID D+ V + + + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335 >gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 330 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 142/327 (43%), Gaps = 35/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE EVSL S + S + + V +D++R Sbjct: 5 IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S H+ D A+ +HG GE+G++Q EL+++PY+ SG+L AL+ DK + Sbjct: 65 SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124 Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + V + + P +KP GSS G+ +K + L Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAPAL 184 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNS 211 ++ D +IE ++DG E++ G V ++F+ Y+ K + Sbjct: 185 RKALM--EDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAK-YNGQV 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGM 268 + PA+I + + V ++ +GC GI R D++ + K+ +E+N PGM Sbjct: 242 EEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTPGM 301 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP S P+ AG +++L +VE+ Sbjct: 302 TPTSFIPQQVRAAGMEMKDVLSDIVEN 328 >gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183] Length = 319 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S EREVSL SG+ A AL D D ++ L PD F VLHG Sbjct: 12 VIVLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GEDG ++ +LEL+ +PY + A ++ DK +K VV + G+ PS+ + + Sbjct: 72 SMGEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHD 131 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP +GGS+LG V+++ +P + + +GD LIE+ Sbjct: 132 LGAAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAM--VGCFAYGDAALIER 189 Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +++G E+ V+ VP + Y Y +Y + ++ V PA++P ++ + Sbjct: 190 HIEGTEVAVSVIERDGEPVALPAVEIVPAGELYDYTARYDAGDTEFVTPARLPEEVARRA 249 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 A AH+A+G R +SR+D + D +V +LE+NV PGMT S+FP A AG + Sbjct: 250 AEAAVTAHRALGLRDLSRTDLIVDEA-GQVHFLEVNVAPGMTETSLFPRAVAAAGLNLGR 308 Query: 288 LLLWMV 293 +L ++ Sbjct: 309 ILHDLI 314 >gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 358 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 150/350 (42%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL+ + + + R +L++ Sbjct: 10 IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ E+ +P G Sbjct: 70 TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q L ++ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEFAPALTEAF--RHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA++P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G ++ E++ +V+ A R Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGLARSRR 356 >gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus] Length = 343 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG S E +VS+ S + A+ +++ ++ I + +S + Sbjct: 6 VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKSGVWKMCEKPCAEWENSNCY 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+AF+ +H GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ + ++N+ + + P +KP + GSS G+ + Sbjct: 126 SSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYGVKKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G++S + + Sbjct: 186 VADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA + + +Q A ++A+GCRG+SR D + ++ Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG T S +P M A AG + EL+ ++ Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGITLPELIDRLI 337 >gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK] gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK] Length = 367 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 158/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V+ + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129 L +PY +G+LASA MDK +K++++S G+PV + + ++ + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+G+ + +P + + H +++IE V G EL CGV+ + Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAIELAR--RHDPKVIIEAAVPGRELECGVLEFPDGHL 244 Query: 190 TEI----------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + FY +E KY + +PAK+ D+ + ++ L+ A AI Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 362 >gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149] Length = 351 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 157/351 (44%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGL 62 Query: 41 SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + ++ +PDLA F LHG GE+G +QA Sbjct: 63 EIAKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +LL I YT L A++MDK +KQ+ GV + + + D +S P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ ++ L S + +++++E Y+ G E CGV+ +L Sbjct: 183 VKPCSGGSSIGVYIVNTEEEYRQALKNSF--RYENEVVVETYIKGREFACGVIDGKALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ ++ Y KY + + V PA I +I + ++ L A QA+ SR+DF+ Sbjct: 241 I-EIIPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFI 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDA-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQKSMEAR 349 >gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 355 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E VSL + K+ +A++ + V I Sbjct: 6 IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142 DK+ KQ+ ++ +P P + +T ++ + P +KP GSS+GI Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 + + + + ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEAELVKGI--EEALKFDKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y + + +A A +AI G+ R+DF + ++ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTKE-GEI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A S+ E++ + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFALA 341 >gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 355 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 52/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E +VS+SS K AL F V +++ + Sbjct: 9 IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F +LHG GEDG + +L+ + P Sbjct: 69 KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131 GIL SAL MDK+ K++ S +P + + ++ + P +K Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I L ++ +++IE+ +D EL CG++G+ L +E Sbjct: 189 PANSGSSLGISKAKTRSEIIKALQKAWEI--DSRIVIEEGLDVRELECGIIGNLKLTASE 246 Query: 192 IAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 I S + S+++ ++PA I I ++++ +A + +A+ G +R DF Sbjct: 247 IGEVSYSTDWYDYDSKYSMDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFL 306 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + +S K+F EIN PG T S+FP + +G + +L+ +V+ +S Sbjct: 307 EKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353 >gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 348 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 141/335 (42%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------K 50 + ++ GG S E VS+ S + A ++ ++ I + RS L + Sbjct: 6 IGIIFGGRSEEHPVSVRSAQEIAKNIDAEKYEPFYIGIARSGAWKLCERPDENWENGSCR 65 Query: 51 P-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 P DLA VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVLSPDRSVHGLLVLEQGRYETISLDLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V G+ V L++ P +KP + GSS G+ + Sbjct: 126 SSALCMDKSLAYTVARGAGIATPNFWTVTANEKVDADLLTYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE+ V G E+ C ++G+ S + + Sbjct: 186 RKEELSGAVDTAR--QYDSKVLIEEAVVGSEVGCALLGNDLDLTAGEVDRISLSHGFFRI 243 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + NST ++PA I + VQ A ++A+GCRG+SR D KV Sbjct: 244 HQESAPESGSENSTAIVPADISAEARSLVQETAKAVYRALGCRGLSRVDMFL-QEDGKVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PGMT S +P M A AG E++ +V Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLAEVIDRLV 337 >gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216] Length = 376 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 68/362 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE +S + +AL+ + V I + + VL Sbjct: 9 VAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGAL 68 Query: 50 -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72 + D+ +LHG FGEDG +Q +L Sbjct: 69 PEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQGLL 128 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------I 124 EL + Y SG+LASA MDK K +++ G+PV P D+ + Sbjct: 129 ELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEVEAL 188 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP + GSS+GI + + + + ++ +H ++++E + G E+ CGV+ D Sbjct: 189 GYPVFVKPARAGSSIGITRVTSREGLAAAVAEAV--SHDPKVVVEAALVGREIECGVLED 246 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQ 236 ++P + + + PA +P D+ V+R A + Sbjct: 247 LDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVFE 306 Query: 237 AIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+G G++R D DP + + EIN PG TP S++P M A G + EL+ +++ Sbjct: 307 AMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQ 366 Query: 295 DA 296 A Sbjct: 367 LA 368 >gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2] Length = 344 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 5 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 65 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 301 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 339 >gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName: Full=VanC ligase gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus gallinarum] gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S + A++ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678] Length = 353 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------------------- 43 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 44 ----LVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330] gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733] gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408] gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12] gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium PC4.1] Length = 358 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082] gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium] gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium] gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO] gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933] gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502] gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410] gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15] gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6] gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF] gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071] gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636] gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317] gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162] gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980] gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01] gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B] gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A] gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C] gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04] gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082] Length = 358 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685] Length = 409 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLKP-- 51 + ++ GG S E EVSL S K +A++ F V I +D+ L+H Sbjct: 47 VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106 Query: 52 -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 D+ F ++HG GEDG +Q +L++L Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVI 130 +P+ S I+ SA MDK K+++ G+PV P + + + + Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ ++ + + ++ +++IE V G E+ C ++G+ + + Sbjct: 227 KPANQGSSVGVSKVRNAEEYARAIAEAL--RFDHKVIIELGVVGREIECAILGNEAAQAS 284 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 Y +++ PA++ + + V+++A A QA+ CRG++R D Sbjct: 285 VCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARVD 344 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +V EIN PG T +S++P++ G + L+ ++E A Sbjct: 345 VFLTEE-GEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFALAR 395 >gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 348 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 68 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 188 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343 >gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38] Length = 324 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL+SG + + F +I + D Sbjct: 4 VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D+ FN +HG GEDGL+QA ELL IP T +AL+ +K V+ Sbjct: 64 SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N + I P +KP K GSS GI +K + Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEFLPAIEN 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 + D+++IE ++DG E++ GV+ + + S + Sbjct: 184 AY--KEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEIVSENDFFDYEAKYLGKSKEI 241 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ +++ ++ A++ + +G SRS+F+ ++ + F LE+N PG+T SI Sbjct: 242 TPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTESIL 299 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S EL +E A Sbjct: 300 PQQAREAGISLPELFENAIELA 321 >gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36] gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36] Length = 353 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8] Length = 361 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 156/350 (44%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------------- 45 +AV+ GG S+E +VS+ S ++ + ++V I + + + Sbjct: 6 IAVVFGGKSNEHDVSVVSAAHVIRSINENSDRYEVICIGITKKGHWLRYMGSTEDIENGK 65 Query: 46 -----------------------LAH------LKPDLAFNVLHGNFGEDGLVQAILELLE 76 L +K D+ F VLHG GEDG +Q I ++ E Sbjct: 66 WTDHPDNLACIFSPDPVHRGFIQLEEDGSYSNIKVDVVFPVLHGKNGEDGTIQGIFQMAE 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPY 128 +P+ +++SA MDK + ++ + G+ I + + + P Sbjct: 126 VPFVGCDLISSACCMDKDVTHTILEAHGIKTAKWISMIYRDLAELDEKCALMEKKLGYPM 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI + + + + H ++++EQ V G+EL C VMG+ + Sbjct: 186 YVKPANCGSSVGISKAHDLEELKAGIKAAF--THDQKVVVEQEVKGVELECAVMGNDTPF 243 Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 ++FY Y+ KY++ S +PA + + +EV+ +A A +A+GC G++R Sbjct: 244 ASTVGQIAAANEFYDYDAKYNNAASKTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARV 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V EIN PG T +S++P++ +AG S+ E +++ A Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTKISMYPKLMEHAGISYAEQEDRLIKLA 352 >gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302] Length = 347 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + + +S P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLSYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENKEELRQALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + +VF E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335 >gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium] gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium] Length = 343 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 143/336 (42%), Gaps = 45/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ F ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + MDK + VV + G+ V ++ + P +KP + GSS G+ + Sbjct: 126 SSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDLVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 K + + + ++ + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 186 KAEELQAAIREAR--KYDSKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ + +++ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 E+N PG T S +P M AG++ E+L ++E Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338 >gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152] gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152] Length = 363 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 61/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++ I + G VLA+ Sbjct: 7 VAVVFGGRSNEHAVSCVSAGSVLRHLDPTRYEAVPIGITPQGGWVLANSDVAAIGLSHEA 66 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F +LHG FGEDG +Q +LEL Sbjct: 67 LPSVDAGGTALTLTADPTRGGELVALDDAGAVLGTVDVVFPILHGPFGEDGTLQGMLELA 126 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131 +PY G+LASA MDK +K+++++ G+PV +++ T + + + P +K Sbjct: 127 GVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRERLGLPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-- 189 P + GSS+G + K D LD +++ H ++++E + G E+ CGV+ + Sbjct: 187 PARAGSSIG--ITKVDDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVLEFPDGRISA 244 Query: 190 ------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 FY ++ KY +PAK+ DI ++V+ LA A QA+ C+G+ Sbjct: 245 SVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRAFQALDCQGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M G + L+ ++E A Sbjct: 305 ARVDFFVTADG--PVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIETALAR 358 >gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 157/299 (52%), Gaps = 7/299 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 + V+ GG+S+EREVS+++GK + L+ + ++V +I++ + + L D A+ LH Sbjct: 3 IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G FGE G VQAILE I Y+ SGIL+SA+ MDK +K + + GV + + + Sbjct: 63 GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122 Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ ++KP +GGSS+G+ D+ + L + +++LIE+ GIE+ Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGE-NEVLIEEMKSGIEI 181 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + ++ I K F+ Y KY + + + + E+ A+ A Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYV-YFFEESLQNEINDFTIKAYNA 240 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C+G +R D++ + K ++LE+N PGMT S+ P+ Y GYS+ E L +++++ Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297 >gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479] Length = 354 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 145/345 (42%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 VL GG SSE VS S + + + + I + + Sbjct: 7 VVLFGGQSSEHVVSCMSVVNVINHMNREKYDLLLIGITEDGHWIKTESAEDIESGRWREG 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +K D+ F VLHG FGEDG VQ +LEL IPY G Sbjct: 67 KTSAVISPDATKQCVILTEGDRAEFVKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135 +LASA+SMDK+ +K VV GV + V R + + P +KP Sbjct: 127 VLASAVSMDKLYTKIVVDDLGVRQAAYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNA 186 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTE 191 GSS G+ + + L +++ H ++L+E+ + G E+ C V Sbjct: 187 GSSKGVARADSREELEAALYEAA--KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY + +S V+ ++P D V+ A +A+ G++R DF Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVNPELPGDAANTVREAAKAIFRAVDGYGLARVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + AG S +L+ +V+ A Sbjct: 304 KDDGTVVFNEINTLPGFTAISMYPMLWEAAGVSKDQLVDRLVDHA 348 >gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 287 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKSYRP 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284 >gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104] gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104] Length = 369 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 9 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L +PY +G+ ASA MDK +K++ ++ G+P+ ++ + + P Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + + + + +H ++++E + G EL CGV+ Sbjct: 189 VKPARGGSSIGVSRVSSWDELDAAVAAAR--DHDPKVIVEAAIAGRELECGVLEMPDGTV 246 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ +I V+ LA A +A+ Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALTR 364 >gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 303 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 90/298 (30%), Positives = 142/298 (47%), Gaps = 6/298 (2%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 MGG S E VS SGKA AL G++ ++ + L PD+ F HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 +G +Q LE+L IPYT SG+L SAL M K S+ + G+ V ++ + + I Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIEAGEKVTPDKI 120 Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P ++KP GSS+G+ + +P L + H ++L+E ++ G E+ ++ Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFSDLPQAL--LEAEKHSPRVLVEPFLAGREVQSAIL 178 Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 L + FY+Y KY S H+ PA + D+ ++ A + R Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAFGLLELR 238 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R D L + +V LE+N PG+T S+ PE+A G SF +L+ ++ A Sbjct: 239 GVARMDTLVLE-NGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSARLD 295 >gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1] gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 343 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 49/339 (14%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHL- 49 + +L GG S E EVS+ S G ++V I +++ Sbjct: 6 VGLLFGGRSREHEVSVVSAAAIAQAFAAGDN------GDRYEVIPIYIEKDGRWRHTERV 59 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HG GEDG +Q +LEL++ PY SG+ ASA+ Sbjct: 60 GIPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAI 119 Query: 90 SMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGS 137 MDK+ K V + G+P P + N + + P +KP GS Sbjct: 120 GMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGS 179 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI K Q + L ++ + + +E V S Sbjct: 180 SVGISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITYSS 239 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ + +PA+IP + ++++ L+ A QA+G G++R DF + P + +V Sbjct: 240 EFYDYETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEV 299 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T +S++P++ A +G SF EL+ +V+ A Sbjct: 300 LINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338 >gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 374 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 146/360 (40%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ + H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236 A P S + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed With Atp Length = 307 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 9/303 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+SSE++VS+ +G + L+ +++ I ++ L+ D A LHG Sbjct: 6 IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117 +GEDG VQ LE L IPY+ S L+S + DK SK+++ G+ I Sbjct: 66 KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ G E+ Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLETVFEW--DSEVVIEKYIKGEEI 183 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 TC + ++F+ Y KY ++ + ++P ++ + V + + ++A Sbjct: 184 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 241 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C +R D + E+N PG T S+ P+ A AG + +LL ++E + Sbjct: 242 LKCSVYARVDXXV--KDGIPYVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIETSL 299 Query: 298 CLR 300 +R Sbjct: 300 RVR 302 >gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032] Length = 368 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 62/358 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG S E +S S + AL+ F+V + + R+ VL P Sbjct: 9 VAIVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGQWVLTSGDPTELAINSRR 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEITAESGADIVLRADPTGSGLLVLDPTEGPRALANVDVVFPVLHGAYGEDGTIQGMLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVI 130 + IPY + + ASA +MDK +K++ ++ G+P+ P ++ + + + P + Sbjct: 129 MAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGLPVFV 188 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MG 183 KP + GSS G+ + + + + ++L+E + G E+ CGV Sbjct: 189 KPSRAGSSFGVSKVSDWADLEAAIAIAREI--DSKVLVEGAIIGREIECGVLEGEAGGTP 246 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +AS+ V DFY +E KY + +PA +P + ++V+ A A A+ C Sbjct: 247 EASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPADLPERVARQVRDYAVRAFTALDCA 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G++R+DF P ++ EIN PG TP S+FP M A +G + +L+ ++ A Sbjct: 307 GLARADFFVTPELD-IYLNEINTMPGFTPTSMFPRMWAASGLEYPKLVDRLIRTALTR 363 >gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909] Length = 368 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 55/348 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51 + V+ GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F ++HG GEDG +Q +L + I Sbjct: 66 LISLNHSNKNVALIPGQEQQQLIAADNATALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ SG++ SA+SMDK +K+++ G+ + P I N + P IK Sbjct: 126 PFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLFIK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G+ ++ + + + ++L+E + G E+ C V+G+ + + Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVTLAF--DFDHKVLVESAIVGREIECAVLGNDNPRASL 243 Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 Y +N V+PA I ++ +A A + + CRG++R D Sbjct: 244 CGEVVVSDEFYSYDTKYINETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRGLARVDV 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T ++++P++ G EL+ ++E A Sbjct: 304 FLTPE-NTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIELA 350 >gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567] Length = 374 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 150/360 (41%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + SA++ + + V I + + L +L+ Sbjct: 10 VALLCGGRSSEHPISLITAVGVLSAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F ++HG FGEDG +Q +LE Sbjct: 70 AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 L E+PY G+ ASA+ MDK K S G+ V P +V + + Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTDRQWTHEREESLKRITALG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS GI + K + + + ++ H ++++E + G E+ CGV+ Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHDAKIIVEAGIVGREIECGVLDGH 247 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236 D+ + P E PA +P D+ + ++ LA A Sbjct: 248 HGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR+DF + P ++ E+N PG TP+S++ M G S+ EL+ ++ A Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366 >gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 287 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D R+ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKSYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GYSF +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284 >gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1] Length = 385 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 152/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ + A +++ + ++V I + L +P Sbjct: 19 VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADEPSRMAIADRK 78 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG +Q Sbjct: 79 LPSVDDLADSEDGAVVLSVDPANREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL IPY SG+LASA+ DK K+V +S G+ V P + V Sbjct: 139 LLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYLTVRPREWTRDADAARGRIL 198 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P IKP + GSS+GI + + + ++ H ++++E + G E+ Sbjct: 199 DFAEEHGWPLFIKPARAGSSIGITKVDDVSGLDEAVREAQ--RHDPKIIVEARLRGREIE 256 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + +++ ++PA + + EV+RLA A Sbjct: 257 CGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKYIDSASGIVPAPLTPEQTAEVRRLAVEA 316 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P M +G ++EL+ +++ Sbjct: 317 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVEYQELVDLLIQ 375 Query: 295 DA 296 A Sbjct: 376 AA 377 >gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 287 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG A +L+ G+ + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTK------QIAQSVGIKTPKSYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + + +IE Y+ G ELT Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 353 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C] Length = 323 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 30/316 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 +AV+MGG +SE E+SL SG A+ L+ ++V I + + + Sbjct: 5 IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L H K D FN +HG+ GEDG +QA LELL IP T +AL+ +K V+ Sbjct: 65 SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + S +N ++ I P +K + GSS GI + I L Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 ++ +++IE + G E++ GV+ + + ST + Sbjct: 183 EIAFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEILSENDFFDYQAKYEGKSTEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA + ++ ++ +A + + +G +RS+F+ ++ LE+N PGMT SI Sbjct: 243 TPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHSIL 300 Query: 275 PEMAAYAGYSFRELLL 290 P+ A AG S EL Sbjct: 301 PQQAKEAGISLPELFE 316 >gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 359 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 55/345 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51 + GG S+E EVSL S K A++ F V+ + +D+ +L P Sbjct: 2 VFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALIS 61 Query: 52 -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F ++HG GEDG +Q +L + IP+ Sbjct: 62 LNHSNRNVALIPGQASQQLITTDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLK 134 SG++ SA+SMDK +K+++ G+ + P I + + P IKP Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + + + ++L+E + G E+ C VMG+ + Sbjct: 182 QGSSVGVSKVRNEAEYQRAVALAF--DFDHKVLVESAIVGREIECAVMGNDHPQASLCGE 239 Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 Y +N ++PA I D+ ++ +A A QA+ C G++R D Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 P-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIELA 343 >gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus pneumoniae CDC3059-06] Length = 347 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 46 LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR DF + ++F E+ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPGLIERLVDLA 335 >gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces toyocaensis] Length = 346 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E VS+ S + A L+ ++ I + +S L Sbjct: 6 IGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWEDGDCR 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PVVLSPDSDVHGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + VV + G+ V + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVDAARFTYPVFVKPARSGSSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 +++ + + + + ++LIE+ V G E+ C ++G + V + + + Sbjct: 186 REEEMSSAVETAR--QYDSKVLIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + ++PA IP VQ A ++ +GCRGI+R D +V Sbjct: 244 HQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCRGIARVDMFL-KEDGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG E++ V A + Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLPMSEVIDLTVSLALTGK 344 >gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1] Length = 317 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 141/321 (43%), Gaps = 30/321 (9%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE ++SL SG L+ + +I + D S+ + Sbjct: 1 MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q EL+ IP T + +AL+ +K + G Sbjct: 61 NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N ++ I P +K K GSS GI + K + + + S Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAINNSF-- 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAK 218 ++++IEQ++DG+E++ GV+ + S + PA+ Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEIVSENDFFDYAAKYEGKSQEITPAR 238 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I D ++ +A ++ +G G SRS+F+F + + + LE+N PG+T SI P+ A Sbjct: 239 ISKDYEQKTVTVAKQVYEILGMTGFSRSEFIF--KNDEPYLLEMNTVPGLTKESILPQQA 296 Query: 279 AYAGYSFRELLLWMVEDASCL 299 A AG + +L +E+A Sbjct: 297 AEAGINMSDLFDNAIEEALKN 317 >gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG] gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF] Length = 389 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 152/362 (41%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A A++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAITDRA 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + + ++ H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFDGLDEAIAEAR--RHDPKFLIESLVQGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P ++Y +++ ++PA + + EVQRLA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P+M +G + EL+ +++ Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379 Query: 295 DA 296 A Sbjct: 380 AA 381 >gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505] Length = 378 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 11 VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSDNR 70 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 71 PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQGMLE 130 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ IPY G+LASA MDK +K ++ + G+ P ++V ++ Sbjct: 131 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 190 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 191 YPLFVKPARAGSSLGISKVDRPEDLAGAIEAARAV--DPKVLVESGIVGREVEVAVLQGR 248 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234 D +A P V PA+I + + A A Sbjct: 249 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIGPEARDLLMDTAARA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF + EIN PG TP S++P M +G + EL+ ++E Sbjct: 309 FEALGCEGLARVDFFLTDA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 367 Query: 295 DASCL 299 A Sbjct: 368 LAVAR 372 >gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium ATCC 25291] gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 369 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + L+ F+V I + VL P Sbjct: 9 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 69 LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L +PY +G+ ASA MDK +K++ ++ G+P+ ++ + + P Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + + + + +H ++++E + G EL CGV+ Sbjct: 189 VKPARGGSSIGVSRVSSWDELDAAVAAAR--DHDPKVIVEAAIAGRELECGVLEMPDGTV 246 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ +I V+ LA A +A+ Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALAR 364 >gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM 15897] Length = 342 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 41/335 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------LAH-- 48 ++ GG S+E VS S + + + + + + L Sbjct: 5 LVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWLEGAT 64 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 D+ F VLHG FGEDG +Q +LE+ ++PY ++AS +MDK+ +K++ Sbjct: 65 KITDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKL 124 Query: 100 VSSCGVPVCPSILVNRFT------------------MDSQHLISPPYVIKPLKGGSSLGI 141 +P PS+ V + M+ + P +K + GSS+G Sbjct: 125 FDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSSVGC 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + L ++++++ + +E D S +P +FY+ Sbjct: 185 YKVNSLTELLPRLHEAATYDRHVVVEKAINATELECAVIGNDDISASRVGQILPHGEFYT 244 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY S +PA++ I +++ A A +A+ G++R DF +D + V+ E Sbjct: 245 YESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYLNE 304 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IN PG T +S++P++ AG L+ +++ A Sbjct: 305 INTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 >gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2 155] gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis] gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 373 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 158/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V I + VL +P Sbjct: 13 VAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAITDGK 72 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 73 LPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYV 129 L +PY SG+LASA MDK +K+++++ G+P+ +++ + + P Sbjct: 133 LAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLDLEQRERLGLPVF 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + +P + + H ++++E V G EL CGV+ Sbjct: 193 VKPARGGSSIGVSRVTAWDELPAAVALAR--RHDPKVIVEAAVIGRELECGVLEFPDGRL 250 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ D+ E+++LA A AIG Sbjct: 251 EASTVGEIRVAGVRGREDGFYDFATKYLEDAAELDVPAKVDDDVADEIRQLAVRAFTAIG 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A G + LL MV+ A Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTAIAR 368 >gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78] Length = 389 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 152/362 (41%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A A++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAIADRA 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + + ++ H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFDGLDEAIAEAR--RHDPKFLIEALVQGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P ++Y +++ ++PA + + EVQRLA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P+M +G + EL+ +++ Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379 Query: 295 DA 296 A Sbjct: 380 AA 381 >gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1] Length = 374 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ + H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236 A+P S + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2] Length = 315 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 160/294 (54%), Gaps = 13/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S EREVSL+ + A+ + V + D + ++A + D+AF +LH Sbjct: 9 VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115 G GEDG +Q +L+LLEIPY SG+L SAL+MDK +KQ+ G+ V + Sbjct: 69 GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P V+KP++ GSSLG+ ++ + + L + + DQ+++E+++ G Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLVDQPAELVPALKLAF--DFDDQVMVEEFIAGR 186 Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT D + +P + F+ Y+ KY + + + PA++P ++ EVQR A Sbjct: 187 ELTGGVLGNADLTPLPVVEIIPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRCA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 LAHQA+ RG SR+D + ++ LE N PGMTP S+ P+ AA G SF Sbjct: 247 CLAHQALNLRGYSRTDMILAE--GGLYVLETNTIPGMTPTSLLPQAAATHGLSF 298 >gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 353 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 158/351 (45%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S+E VS S A + L+ F+V I + R Sbjct: 7 VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ F +LHG FGEDG VQ + EL +PY Sbjct: 67 EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136 G+LAS++ MDK +K+V+++ +PV P ++ + D + + P +KP +GG Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + + P + + +++L+E + G E+ GV+ A + Sbjct: 187 SSIGVSKVTTWEEFPAAVDLALED--DEKILVEPEIVGKEVEIGVLHYADGTLLASVPAL 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA ++ ++++ +A A +A+ C G+SR DF Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S V+ EIN PG TP+S++P++ A +G + LL ++E A Sbjct: 305 FVTKDS--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353 >gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238] Length = 270 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 119/276 (43%), Positives = 168/276 (60%), Gaps = 9/276 (3%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 AGF V +ID + L KPD FN LHG + EDG+VQ +LE L IPYTHSG+LA Sbjct: 2 RTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA +MDK ++K + + G+P S+L ++ +++ H++ PPYV+KP GSS+GI ++ + Sbjct: 62 SATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVME 121 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 S + + + D +++E Y G ELT V+G +L VT+I V +Y Y KY Sbjct: 122 GDS-----PPTLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASKY 174 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264 S HV+PA +P DI++ A AH A+GCRG+SR+D+ +D + LE N Sbjct: 175 EVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDESRGLDGLILLETNT 234 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 QPGMTP S+ PE AA G SF +L+ WM+EDASC R Sbjct: 235 QPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270 >gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1] Length = 367 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 159/360 (44%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V+ + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129 L +PY +G+LASA MDK +K++++S G+PV + + ++ + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+G+ + +P + + H +++IE V G EL CGV+ + Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAIELAR--RHDPKVIIEAAVPGRELECGVLEFPDGHL 244 Query: 190 TEI----------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + FY +E KY + +PAK+ D+ + ++ L+ A AI Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G ++ LL MVE A Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYQTLLATMVETALAR 362 >gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099] gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099] Length = 357 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 54/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG S+E +VS S A++ ++V I + R L Sbjct: 7 VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGAQ 66 Query: 49 ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F VLHG FGEDG VQ E+ ++ Y Sbjct: 67 VPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGG 136 GILASA +MDK +K+++ G+ V S+ + + P+ KP + G Sbjct: 127 GCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGLPFFAKPARQG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDV 189 SS G+ + + + + + LIE++VDG E+ C V+ + Sbjct: 187 SSFGVSKVHDRDGFEQAVETAL--RYDSKALIEEFVDGREIECSVLERADGSLTVSPPGE 244 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 A + + + + +PA +P D+ +A A +A+GC ++R DF Sbjct: 245 IIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFF 304 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + E+N PG T +S++ + A AG + +++ ++E A Sbjct: 305 L-RADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALAR 353 >gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588] gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588] Length = 329 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 32/328 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 +A++ GG S E +S+ S L+ + + V +I V R Sbjct: 5 IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + K D F +HG GEDG +Q E+L IP+T G++ SAL+ +K +VV Sbjct: 65 TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124 Query: 101 SSCGVPV-----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S GV + P +KP +GGSS+G+ + + + + Sbjct: 125 ASLGVVNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAIE 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212 ++ N Q+LIE++V G E+TCG+ + +F+ YE KY+ S Sbjct: 185 KAF--NEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEIISSKEFFDYEAKYTPGVSR 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA+ P +I ++Q A + + CRGI R DF+++ S ++F+LE+N PG + S Sbjct: 243 EVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSENS 302 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300 I P+ AG + +E ++E+ CLR Sbjct: 303 IVPQQVRAAGKTLQEFYGTLIEE--CLR 328 >gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 287 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++K + I V + D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAENIGIRVPKSYRD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKL------RKPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM 14884] Length = 324 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 33/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 ++ GG S E EVSL+S + A+ + + + Sbjct: 8 LIAGGRSGEHEVSLASARGVLEAMP---HPTDLAVIAKDGRWLTGTAARAALEAGRAQRG 64 Query: 46 -------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 L+ + D+AF +LHG +GEDG +Q LE+L +PY +G+ A+AL MDK +K+ Sbjct: 65 EHPFPPPLSWHRYDVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKR 124 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 ++ G+PV P + + R + SPPY +KP GSS+GI ++ +++ L ++ Sbjct: 125 TLAHAGIPVVPWVSLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAF 184 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 W D++L+EQ ++G+ E+ A V +S+FY Y KY+ + ++ Sbjct: 185 RW--DDRVLVEQGLEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLI 242 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + D+ + +Q +A A++ +G RG++R DF P ++ E+N PG TP S++P Sbjct: 243 PAPVDADVARRLQEVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYP 301 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ +G + LL +V A Sbjct: 302 KLWQASGLEYEALLERLVRLA 322 >gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 388 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 145/365 (39%), Gaps = 69/365 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E +S ++ SA++ ++V + + +L P Sbjct: 21 VAVVFGGRSGEHTISCATAAGVLSAIDRDHYEVLPVGITPEGQWLLVEDDPAALELSDSR 80 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG +GEDG +Q +LE Sbjct: 81 PPVTITADGLGRGTLTAPLGGGELTVLGPTGPQVLGRVDVVLPLLHGPYGEDGTIQGMLE 140 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 ++ +PY G+LASA MDK +K ++ + G+ P ++V T ++ Sbjct: 141 MMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHTWKRDPEAILEACRSLT 200 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSSLGI + + + + + + + ++L+E + G E+ V+ Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLRQAIEAARAV--DPKVLVESGIVGREVEVAVLQGR 258 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234 D +A P V PA+I + + A A Sbjct: 259 DDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDAVAMVCPARIGPEARALIMDTAARA 318 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G++R DF S + EIN PG TP S++P M +G + L+ ++E Sbjct: 319 FEAVGCEGLARVDFFLT-DSGEAVVNEINTMPGFTPFSMYPYMWQVSGLDYTALVSELIE 377 Query: 295 DASCL 299 A+ Sbjct: 378 LAAAR 382 >gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 343 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 154/342 (45%), Gaps = 53/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S ER+VSLSSG A ALE+ G + +D+ Sbjct: 3 IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62 Query: 39 --------DRSVGLVLAH----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74 + + ++ L D F LHG GE+G +QA ++ Sbjct: 63 YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I Y+ S S L+MDK +KQ++ +P L + P V+KP+ Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYST---PCVVKPID 179 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ +++ + L ++ + +++IEQ ++G E + GV+GD L + Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAE--KYNSKVMIEQKIEGREFSVGVLGDNVLPAI-EII 236 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY+YE KY + + PA I D+ + + L ++ +G SR D++ Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTKEL 296 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ +E N PGMTP S+ P+ A G SF EL +VE + Sbjct: 297 D-IYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELS 337 >gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4] gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4] Length = 368 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPESLSIRGRS 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+P+ +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+GI + + ++ + + H ++++E + G E+ CGV+ DV Sbjct: 188 VKPARGGSSIGITRVAEWAALDDAIAHAR--RHDPKVIVESGIAGREVECGVLEFPDGDV 245 Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + Y ++ KY +PAK+ + E++ LA A A+ Sbjct: 246 RASVIAEIRMPEGADDDEAFYDFDSKYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M G + L+ +V+ A Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWDAVGVDYGTLVSTLVDTALAR 363 >gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC 27064] gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 390 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG SSE E+S+ + A A++ + + V I + L +PD Sbjct: 24 VAVVFGGRSSEHEISVVTAGAVLRAIDRSVYDVLPIGITVDGRWALTADEPDRMAITDRR 83 Query: 53 ------------------------------------------LAFNVLHGNFGEDGLVQA 70 + F VLHG +GEDG +Q Sbjct: 84 LPSVDQLAESTEGDVVLSVHPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122 +LEL +PY +G+L+SA+ DK K+V +S G+PV P ++ + Sbjct: 144 LLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYTVIRPREWEQDASAARKKIV 203 Query: 123 ----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 P +KP + GSS+GI + + + ++ H ++L+E + G E+ Sbjct: 204 DFTGDHGWPVFVKPARAGSSIGITKVDDLSGLDEAIEEAR--RHDPKILVEALLRGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + +++ ++PA + + EV+RLA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKYIDSASGIVPAPLTEEQTAEVRRLAVAA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A C G+ R+DF + EIN PG TP+S++P M G + EL+ +++ Sbjct: 322 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQETGVGYAELVDRLIQ 380 Query: 295 DA 296 A Sbjct: 381 AA 382 >gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424] gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424] Length = 355 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 46/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG S+E VSL + K+ +A+ + V I Sbjct: 6 IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65 Query: 37 -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D D S L + K D+ F VLHG GEDG +Q +LE+++I Y + +L+SA M Sbjct: 66 IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125 Query: 92 DKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 DK+ KQ+ + + N+ + + P +KP GSS+GI Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197 ++ + + ++ ++++EQ G E+ V+G + T+ + + Sbjct: 186 RCNDEKQLIKGIEEAL--KFDKKIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 +FY YE KY+ S +PA I +Y E + +A A +AI G+ R+DF + K+ Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTKE-GKI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP S+FP + A ++ E++ + + A Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEIIEELFDLA 341 >gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum] Length = 343 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46 +AVL GG S E VSL+S ++ A+ ++V I + ++ L Sbjct: 4 IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63 Query: 47 AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K PD+ F VLHG +GEDG +Q +LEL+ +PY + A Sbjct: 64 EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123 Query: 87 SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 SAL M+K Q+ + G+ P IKP + GSS G Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + ++ L ++++ +G +LI++ + GIE+ CG+ ++ + Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY +++T +PA +PL + +++ A L ++ +G G++R DF ++ Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S +P M A G S+ L+ ++ A Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338 >gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1] gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + L+ F+V + + VL +P Sbjct: 7 VAVVYGGRSSEHAISCVSAGSILRNLDPQRFEVVPVGITPEGSWVLTDGRPETLAITDGA 66 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 67 LPGVSGSSGTELALAADPGRRGQLLSLGDAAGDVLAAVDVVFPVLHGPYGEDGTIQGLLE 126 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYV 129 L +PY +G+LASA MDK +K+++++ G+PV +++ + + P Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD- 188 +KP +GGSS+G+ + ++P + + H ++++E + G EL CGV+ Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAIELAR--RHDPKVIVEAAIPGRELECGVLEFPDGHL 244 Query: 189 ---------VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V + + FY +E KY + +PAK+ I + V+ LA A AI Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 305 CQGLARVDFFLTDAG--PVINEINTMPGFTTISMYPRMWAASGIDYPTLLATMVETAIAR 362 >gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170] Length = 326 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 149/321 (46%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ S + S ++ +KV I++ D Sbjct: 5 IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +KPD A+ +HG GE+G++Q ELL IPY+ +L SAL+ +K + Q + Sbjct: 65 SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124 Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV + S+LV+ + I P IKP GSS G+ +K + I L Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPALQA 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214 + D +IE Y+DGIEL G + V + + T + Sbjct: 185 AF--AESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEVVSKNEFFDFNAKYNGQVTEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ VQ+L + +GCRGI R D++ K+ LEIN PGMT S Sbjct: 243 TPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A AG +E++ ++ED Sbjct: 302 PQQARAAGIDMKEIMTDIIED 322 >gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644] Length = 382 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 50/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S AL+ ++VS Sbjct: 8 IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67 Query: 37 --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DVD S L L+ +K DL V+HGN GEDG VQ++ LL PY SG Sbjct: 68 AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I +SA+S DK +KQ+++ G+ + + +KP + GS Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192 S+GI + + + ++ L+ E + E+ C V+G+ + + Sbjct: 188 SVGIYKVSNKEEFDKAIQDGFHYDF-KILVEETIANPREVECSVLGNRDIKASKLGAIRV 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + + +P ++P ++ KE+Q+++ A + +G RG++R DFL D Sbjct: 247 PAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVDE 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T +S++P++ A +G ++++LL +++ A Sbjct: 307 -NDVPYFGEVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQLA 349 >gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1] Length = 368 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VGAVFSPDATEKCVLIERERGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 368 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VGAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2] gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1] Length = 315 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1] gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1] Length = 368 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + L+ ++V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPETLSIRGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+P+ +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+GI + + ++ + + H ++++E + G E+ CGV+ DV Sbjct: 188 VKPARGGSSIGITRVAEWAALDDAIAHAR--LHDPKVIVESGIIGREVECGVLEFPDGDV 245 Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + Y ++ KY +PAK+ + E++ LA A A+ Sbjct: 246 RASVIAEIRMPEGAGDDEAFYDFDSKYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M G + L+ +V+ A Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWGAVGVDYGTLVSTLVDTALAR 363 >gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211] Length = 353 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 100/346 (28%), Positives = 155/346 (44%), Gaps = 52/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAH-------- 48 + V+ GG+S E VS+ S +AL+ F+V + +D + + Sbjct: 8 VCVIFGGVSGEHNVSIQSAITVVNALKQGENANRFEVISLYIDSQGRWMNNNVAKEVLSN 67 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG +Q +L+L P+ SG Sbjct: 68 GRKPSTNETPENLSSQGFRYFPEDIEEIDVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSIL-----------VNRFTMDSQHLISPPYVIKP 132 +L SAL MDK+ K +S +P + F + + P IKP Sbjct: 128 VLGSALGMDKIAMKIAFASANLPQVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190 GSS+GI Q + L ++ NH +++IE+ V G EL CGV Sbjct: 188 ANLGSSVGITKAYNKQQLIEGLNIAA--NHDPRIVIEESVTGRELECGVLGKEKMIASTV 245 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 +SD+Y Y+ KYS ++S ++PA I +I K++Q L+ LA +AI GI+R DF + Sbjct: 246 GEVKHQSDWYDYQAKYSGVSSEVLIPAPISEEISKKIQELSLLACKAISVEGIARVDFFY 305 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + V EIN PG T S++P + +G + +L+ +VE A Sbjct: 306 KEDTNHVLINEINTLPGFTMQSMYPMLWNQSGLNIEKLVAILVETA 351 >gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054] Length = 380 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 69/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS+ + + +++ A ++V I + L +P Sbjct: 16 VAIVFGGRSSEHGVSVVTAASVLRSIDRAKYEVLPIGITHEGRWALVGDEPSRMAITDGR 75 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ +LHG +GEDG +Q Sbjct: 76 MPDVDQVAESTEGQVTLPAAPGNREVVWSEPGAAPKVLGEVDVVLPLLHGPWGEDGTLQG 135 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----------VCPSILVNRFTMDS 120 +LEL +PY SG+LASA+ MDK +K+++ S G+ S + Sbjct: 136 LLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYTVLKPREWESEAGRAAARER 195 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI +K + + ++ H ++++E+ V+G E+ CG Sbjct: 196 IAALGLPLFVKPCRAGSSIGITKVKDLADLDAAVEEAR--RHDPKVIVEKGVEGREIECG 253 Query: 181 VMGDASLDVTEIAVPKSDFYSY----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+ + + +S +PA++ E++R A Sbjct: 254 VLEFEDGPRASVPAEVLVDGDFEFYDFEAKYIDSSEVRIPAELTAAEQAEIRRQAVEVFD 313 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GC G++R DF + E+N PG TP+S +P+M G + EL+ ++ A Sbjct: 314 GLGCEGLARVDFFLLA-DGRWMVNEVNTMPGFTPISAYPKMWEATGVPYAELIDRLL--A 370 Query: 297 SCLR 300 + LR Sbjct: 371 AALR 374 >gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31] Length = 287 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++K + I V + D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAESIGIRVPKSYRD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKL------RKPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAERIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis C231] gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis 1002] gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis I19] Length = 363 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 153/349 (43%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG SSE VS S A S L+ ++V + + R + Sbjct: 16 VAVVYGGQSSEHSVSCVSAGAIMSHLDPQKYEVFPVGITRDGVWTVGESDATKLRTVDRV 75 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + D+ F LHG FGEDG +Q + EL IP Sbjct: 76 MPEVEFVREVKLSVNPRSAGEFRYEDGTLYAQADVIFPALHGRFGEDGTIQGMFELSGIP 135 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ + ++ P +KP +G Sbjct: 136 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGDETLTESDKQMLGLPVFVKPARG 195 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + L + H ++++E + G+E+ CGV+ A + Sbjct: 196 GSSIGISRVIEWDDFDAALTLAR--EHDTKVIVEAEIKGVEVECGVLERADGSLIASVPA 253 Query: 196 K--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + FY ++ KY T +PA +Q L+ A QA+ CRG+SR D Sbjct: 254 QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQTIALIQSLSLEAFQALNCRGLSRVD 313 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP+S++P++ G + ELL +++ A Sbjct: 314 FFVTDQG--PVLNEVNTMPGFTPISMYPQVFEATGIGYAELLSHLIDQA 360 >gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991] Length = 354 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 146/347 (42%), Gaps = 53/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 AV+ GG SSE VSL S + L + + + + + + Sbjct: 7 AVIFGGQSSEYAVSLHSAGSLIRKLHKERYDLLLVGITKDGKWYIYDGDVESIEHDTWLQ 66 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D F VLHG GEDG +Q + EL IPY Sbjct: 67 DASTCPCVLSCSTANHGFLKLCSDGSYEEIPVDCIFPVLHGKNGEDGTIQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131 G ++S++ MDK + V+ + VP P + V + + P IK Sbjct: 127 VGCGHMSSSICMDKEMTHIVLENAKVPCAPYLCVYEEKDMDYEAVYQEAKAKLGLPIFIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189 P GSS GI + + L + + ++++E ++G E+ C VMG+ L Sbjct: 187 PANAGSSYGISKLDSFEGFEAALKDAFYHDGKGKVILETTIEGFEIGCAVMGNRELFAGN 246 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + F+ YE KY ++S PA+I ++ +E + LA A++A+ C+G++R D Sbjct: 247 VDEIETSLPFFDYEGKYQMVDSHIYCPARISKELIEEARTLALRAYKALNCKGMTRVDMF 306 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++ E+N PG T S +P M AG +F +L+ +V+ A Sbjct: 307 KTP-DDQILINEVNTIPGFTDTSRYPTMMKEAGIAFSDLIDRLVDLA 352 >gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 348 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ + + ++ P +KP GSS+GI + Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGISKAE 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + ++ + + ++ + IE+ D + V FY Y+ K Sbjct: 187 GEAALRTAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I DI +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYTDLVEKLVELA 336 >gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1] Length = 368 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG SSE VS S + ++ + V + + + Sbjct: 22 VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81 Query: 46 ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + + D+AF VLHG +GEDG +Q + EL +PY G+ Sbjct: 82 VRAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136 LASA+SMDK+ +K V + GV + V R + + S P IKP G Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKYFSYPVFIKPSNAG 201 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192 SS G+ + L +++ H ++L+E+ + G E+ C V G + +V Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVISSGVGE 259 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + +DFY ++ KY + S V+ ++P D ++V+ A A+ G++R DF Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +V + EIN PG T +S++P + AG EL+ ++E+ Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361 >gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris FB024-16] Length = 374 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 66/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S ++ ++ F+ I + R VL Sbjct: 9 VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 + D+ +LHG +GEDG +Q + E Sbjct: 69 GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 ++ +PYT G+ ASAL MDK +KQV+ G+PV ++ + + + Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDLG 188 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184 P +KP + GSSLG+ ++ + ++ + H ++++E V G E+ C V+ Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236 A P S + +PA+IP + K + A A + Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + G++R DF + + ++ EIN PGMTP S+FP M + G +++L+ ++E A Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366 >gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787] Length = 351 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 55/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSL+SG L + G + +DV Sbjct: 3 IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62 Query: 39 --------DRSVGLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAIL 72 + + D+ F LHG+ GE+G +QA Sbjct: 63 EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 ++L I YT L SAL+MDK +KQ+ + GVP + + D+ ++ P V Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGVPTPLGTNLTKDRKDTALSDLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + + S + D+++IE Y+ G E G++ +L V Sbjct: 183 VKPCSGGSSIGVYIVDTMDAYKEAVENSF--RYEDEIVIEPYIKGREFAVGIIDGKALPV 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY + + PA I ++ + +QR A LA +A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 D + ++ LE+N PGMT S+ P+ A AG ++ +L +++ + Sbjct: 300 LDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQKSLAR 348 >gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4] Length = 368 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + S L+ + V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAISGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+PV +++ + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGIATLTEEQKAELGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+GI + + + + H ++++E + G E+ CGV+ + Sbjct: 188 VKPARGGSSIGITRVSNWDGLDGAIAHAR--LHDPKVIVEGAIIGREVECGVLEFPNGDV 245 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + FY ++ KY +PAK+ + +++ LA A +A+ Sbjct: 246 KASVVAEIRMPDADTDSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G+SR DF EIN PG T +S++P+M G +R L+ +V+ A Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAIAR 363 >gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121] Length = 368 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 156/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E VS S + S L+ + V I + VL P Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAIRGRA 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 68 LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY G+LASA MDK +K+++++ G+PV +++ T + + + P Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGTATLTEEQKAELGLPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+GI + + + + H ++++E + G E+ CGV+ + Sbjct: 188 VKPARGGSSIGITRVSNWDGLDGAIAHAR--LHDPKVIVEGAIIGREVECGVLEFPNGDV 245 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + FY ++ KY +PAK+ + +++ LA A +A+ Sbjct: 246 KASVVAEIRMPDSDADSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G+SR DF EIN PG T +S++P+M G +R L+ +V+ A Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAVAR 363 >gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 375 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 137/357 (38%), Gaps = 62/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E EVS + A++ ++V I +D+S Sbjct: 11 VAVIFGGQSNEHEVSCLTAAGVLGAIDQTRYRVHGIGIDKSGLWHRYSVDEIRALQIVDG 70 Query: 45 ------------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 + A D+AF ++HG + EDG VQ LE+ Sbjct: 71 VMPSIGADHPLAELFRDAGGVHLATLDEDRLTAREPIDVAFPLMHGAYAEDGTVQGKLEM 130 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125 L + Y G+ +SAL MDK + V+ + GVP + V R + Sbjct: 131 LGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQLG 190 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDGIELTCG 180 P +KP +GGSS+GI + S+ + + + GI G Sbjct: 191 YPVFVKPARGGSSVGISRVTGPDSLAAAIDAARLVDPKVLVEQAVVGAREVECGILGGDG 250 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 AS + + FY Y KY +PA + + + VQ LA A+ Sbjct: 251 TAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFTALD 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R D P +V EIN PG T S++P M +G + EL+ ++ A Sbjct: 311 CEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELIDQLIALA 366 >gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49] Length = 353 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEHAFAKR 348 >gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 390 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 156/352 (44%), Gaps = 60/352 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKP--------- 51 +L GG S+E +S S AL+ + + V + +D V L P Sbjct: 34 VLLFGGRSTEHAISCVSAGGVLRALDRSRYDVIPVGIDPEGRWVVLPEDSPVLTAVSADL 93 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L++ Sbjct: 94 PTVNAADGIEVTLTPDPTKPRLLVSDPSSPLRDLGTVDVVFPLLHGPFGEDGTIQGLLDM 153 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131 +PY SG+ ASA +MDK K+++++ G+PV P +V S+ + P +K Sbjct: 154 SGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYTVVRPGQTLSETERELLGLPVFVK 213 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + + ++L+E + G E+ CGV+ E Sbjct: 214 PARGGSSIGISRVDAWADLDTAFKAAR--SSDPKVLVEAAIVGREIECGVLDRLDGSGPE 271 Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 +VP FY +E KY S + +PA++P ++ + V+ A A++A+ C G++ Sbjct: 272 ASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPHELTERVRATATAAYEALDCAGLA 331 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D P + E+N PG T S+FP++ A +G F L +V+ A Sbjct: 332 RVDMFVTPA-GDIVLNEVNTMPGFTSTSMFPQVWAASGLDFAALTDRLVQLA 382 >gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2] Length = 287 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 101/296 (34%), Positives = 158/296 (53%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKAYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + +IE Y+ G ELT Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKIV------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 363 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 152/360 (42%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 3 VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPQGSWVLTDGDPDALAISNRQ 62 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 63 LPEVTAQSGTELALPADPLRSGQLVSLSTGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 122 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L +PY +G+LASA MDK +K++ + G+PV ++ D + P Sbjct: 123 LAGVPYVGAGVLASAAGMDKEFTKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVF 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + + + + H ++++E + G E+ CGV+ Sbjct: 183 VKPARGGSSIGVTRVSSWDDLAA--AVAVARRHDPKVIVEAAITGREVECGVLEMPDGSV 240 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ DI ++ LA A +AI Sbjct: 241 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAID 300 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 301 CQGLARVDFFLT--DDGPVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 358 >gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 368 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S+E +VS S A++ ++V I + R +L Sbjct: 7 VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWLLQPSSEAGVDGAGAP 66 Query: 47 -----------------------AHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIP 78 A ++PD + F VLHG FGEDG VQ E+ ++ Sbjct: 67 VSGDGVEVALLPGGKGRLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVA 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLK 134 Y GILASA +MDK +K+++ G+ V S+ + + P+ KP + Sbjct: 127 YVGCGILASAAAMDKDVAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPAR 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------L 187 GSS G+ +K + + + ++LIE++V+G E+ C V+ A Sbjct: 187 QGSSFGVSKVKDRDGFEQAVETAL--RYDSKVLIEEFVEGREIECSVLQRADGSLTVSLP 244 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + + + + +PA +P + + + +A A +A+GC ++R D Sbjct: 245 GEIIPAGKHGFYTYEAKYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVD 304 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 F + E+N PG T +S++ + A G + +++ ++E A Sbjct: 305 FFL-RADGSLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIEHALAR 355 >gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380] Length = 287 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 151/289 (52%), Gaps = 13/289 (4%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 SG+A + L +AG ID L D F LHG GEDG +Q +LE L+ Sbjct: 2 LSGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQ 61 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPP 127 +PYT SG++ASAL+MDK+R+K V + G+P+ P + +NR ++ + P Sbjct: 62 LPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLP 121 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 ++KP GSS+G+ + K + L+++ H +LIE+++ G E T ++GD L Sbjct: 122 LIVKPSHEGSSVGMSKVDKISELQGALVEAF--RHDTDVLIEKWLSGPEFTVAILGDEVL 179 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 I P Y YE KY S + + P+ + ++ +++ L+ A+QA+GC G R D Sbjct: 180 PSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVD 238 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + D + LE+N PGMT S+ P A +G SF +L+ ++ A Sbjct: 239 VMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 286 >gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 353 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 315 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M] Length = 373 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 157/357 (43%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 13 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 73 LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYV 129 L +PY +G+LASA MDK +K++ S+ G+P+ P ++ + P Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + +P + + H ++++E ++G EL CGV+ Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAIAAAR--RHDPKVIVEAAINGRELECGVLEFPDGRL 250 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY +E KY + +PAK+ D+ V++LA A +AI Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 365 >gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 368 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 47/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E E+SL S A ++ F+ + +D+ L Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 LK D+ F V+HG GEDG +Q +L ++ +P+ S +L Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 +S++ MDK SK ++ G+ V P N + P +KP GSS+ Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPK 196 G+ + K + L L+++ + +++LIE + G EL C E+ + Sbjct: 186 GVSKVTKCKDFNLALIKAF--SFSNKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++FY+Y KY + ++PA I I +++ +A A Q + C G++R D + L K Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLN-LDNK 302 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F E+N PG T S++P++ +G + +EL+ +VE A Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260] Length = 314 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 152/305 (49%), Gaps = 14/305 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--HLKPDLAFNVLHG 60 V GG S ER VSL SGKA A AL AG +V D+ +G+V A DL F LHG Sbjct: 5 VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GEDG +QA+LE IPYT SG + +MDK ++ V G+PV P + R Sbjct: 65 GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124 Query: 121 QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 L S +KP GS++G+ ++ + + + + + + D+L+ E+++ G Sbjct: 125 PDLESLMAREGGHLALKPCCCGSTVGVSLVHRPEDLREA--RDLALKYDDRLVAERFIPG 182 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 ELT V + P FY Y KY+S + ++ PA + + V LA Sbjct: 183 RELTVAVFEEGGRPRALPAIEIRPHEGFYDYRNKYTSGATEYLCPAPLEEALAARVGSLA 242 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 AH+A+GCR SR DF + F LE+N PGMT S+ P+ A G+SF ++ Sbjct: 243 EAAHRALGCRVYSRVDFRLSEE-GEPFLLEVNTAPGMTGTSLVPKAGAAVGWSFPQVTDR 301 Query: 292 MVEDA 296 +V + Sbjct: 302 IVRAS 306 >gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72] Length = 353 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+ERE+S+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 RAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G++R DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTE-DSQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G S+ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348 >gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3] Length = 315 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1] Length = 354 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 150/345 (43%), Gaps = 53/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 VL GG SSE VS S + ++ ++V+ I + + Sbjct: 7 VVLFGGQSSEHIVSCMSVVNVINHIDREKYEVALIGITEEGRWIKTDSVEDIETGTWKNG 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 LK D+ F VLHG GEDG VQ +LEL IPY G Sbjct: 67 TVSAVISPDATMGGIILLDGEKTEVLKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +L+SA+SMDK+ +K +V GV + V R + + S P +KP Sbjct: 127 VLSSAVSMDKLYTKIIVDDLGVTQAAYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNA 186 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191 GSS G+ + + + L +++ H ++L+E+ + G E+ C V G A Sbjct: 187 GSSKGVSRAEDRKELMEALTEAA--VHDRKILVEEMIVGREIECAVFGGGNLPAEASGVG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY ++ KY + +S V+ +P + V+ A QA+ G++R DF Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVDPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFV- 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V + EIN PG T +S++P + AG + EL+ ++E A Sbjct: 304 KEDGSVVFNEINTMPGFTAISMYPMLWEAAGMNKDELVGRLMEHA 348 >gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 287 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ G+ + +D + + DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDETNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASAL+MDK ++K + I V + D Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAENIGIRVPKSYAD 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + L + + +IE Y+ G ELT Sbjct: 117 LESIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKV------KKPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H+ Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +GISRSDF+ K+++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284 >gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 348 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ + + + ++ P IKP GSS+GI Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGISKAD 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + ++ + IE+ D + V FY Y+ K Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I +I +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601] gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601] Length = 355 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 136/343 (39%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGL------------ 44 + ++ GG S+E EVS+SS K A + F + +++ Sbjct: 9 IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68 Query: 45 -----------VLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + K D+ F +LHG GEDG + +L + P Sbjct: 69 ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131 GI+ SAL MDK+ K + S+ +P ++ + ++ P +K Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI + I L ++ + + V IE Sbjct: 189 PSNSGSSLGISKVINKSEIIPALEKARGIDPSILIEEGLEVREIECGIIGNSKLLTSEIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 KSD+Y Y K N+ ++PA+I I KE++ +A + +A+ G +R DF + Sbjct: 249 EVNYKSDWYDYNSK-YHSNNKIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S K+F EIN PG T S+FP + +G +L+ +V+ Sbjct: 308 KSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350 >gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202] gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 327 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 17 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 76 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 77 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 136 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 137 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 194 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 195 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 254 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 255 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 313 Query: 288 LLLWMVED 295 + +V+D Sbjct: 314 VCSRLVDD 321 >gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] Length = 315 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279] Length = 322 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 33/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 +L GG E EVSLSS + +A+ + + + +L Sbjct: 5 LLAGGPPGEHEVSLSSARGVLAAMP---HPTELVVIAKDGRWLLGEDAYEALRAGVAEQG 61 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D+ F +LHG GEDG++Q L+LL PY +G+ +SAL MDK K+ Sbjct: 62 THPFPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKR 121 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V+ G+PV P + + + Q PPY +KP GSS+GI +K DQ L ++ Sbjct: 122 VLRQAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAF 181 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 +W D++L+EQ ++G+ E+ A V +S+FY YE KY+ + L Sbjct: 182 AW--DDKVLVEQGIEGVRELEVALLGNIHAEASVVGEITYQSEFYDYETKYTEGKAQLHL 239 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA IP ++ E++ A A++ +G RG++R DF P +++ E N PG TP S++P Sbjct: 240 PAPIPPELSDEIRATALEAYRILGVRGMARVDFFLSPQ-GELYLNEFNTIPGFTPTSMYP 298 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ G ++ +LL +V A Sbjct: 299 KLWQATGLAYPDLLDRLVRLA 319 >gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 366 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG+SSE EVS S L+ +++ I + + + Sbjct: 11 VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKEGRWLYTEADSAQMADGSWE 70 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL IP Sbjct: 71 ELPGNMPCVLSPDRADHGLILFTPAGQVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ + P Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIESDPDGVCDGVIAKLGWPIF 190 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + +++ E +VDG E+ C V+G Sbjct: 191 VKPANAGSSVGITKAHDRDELKAAIRLAL--ANDRKVVFEAFVDGHEVECAVIGSDPAVS 248 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA++P + EV+ A +A+ A+GC G++R D Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLPEEKLDEVKTYAAMAYTALGCEGLARCD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++ A Sbjct: 309 FFVEKDTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357 >gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC 29799] Length = 350 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 154/345 (44%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AVL GG S+E VSL S A + L+ A + + + + R + Sbjct: 6 IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65 Query: 46 ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78 LA P D AF VLHG GEDG VQ +LEL IP Sbjct: 66 RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133 G L SA+ MDK + ++ +S G+ V S L + + +S P +KP Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191 + GSS GI + +P + + H D+++IE+ V G E+ C V ++ + Sbjct: 186 RSGSSFGITRVTDRADLPQAVAAAL--EHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F+ Y KY L S +PA+I + +Q+ A A++A+GC G +R+DF F Sbjct: 244 EIELTQGFFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFFT 303 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P ++ + EIN PG T S +P M A G F L+ +VE A Sbjct: 304 PE-GEIVFNEINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347 >gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16] Length = 349 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 153/347 (44%), Gaps = 51/347 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------VDRSVGLVLAHL 49 + VL GG+S ER VSLSSG AL G KV+ +D VD + Sbjct: 3 IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62 Query: 50 K----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 K D+ + LHG GEDG +QA L+LL Sbjct: 63 KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133 +PYT SG L SA++MDK +K++V+ + P V+KP+ Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLVAHKVRTPSWCTVTVTEENLEQLMEETKLPVVVKPI 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+G+ + + L +S G + ++EQYV G E+ V+ +L Sbjct: 183 ASGSSIGVTIAHTKDDLRRGLEESIRL--GGRTVLEQYVKGREIQVAVLNGKALPSI-EI 239 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +P++DFY Y KY + V PA+IP + K+V A + +G SR+DF+ Sbjct: 240 IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADFIVTE- 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + ++LEIN PGMTP S+ P+ AA G + L +V + R Sbjct: 299 DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIVASSLKAR 345 >gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 370 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 61/359 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + +L GG S E +S ++ A +A++ F+V + + V A P Sbjct: 10 VMLLFGGRSGEHMISCATASAVMAAIDRERFEVVPVGITLEGQWVPALDDPQHYALKDGE 69 Query: 52 -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +L+ Sbjct: 70 GAFVEAQGTQVAFLAGTNRLVEFSASNPEVFKDLGEVDVVFPLLHGPFGEDGTIQGLLDT 129 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISP 126 ++ Y G+ ASA MDK +K ++ + + ++ + Sbjct: 130 ADVRYVGCGLTASAAGMDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGE 189 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 +KP + GSS+GI + + + ++ H ++++E G EL CGV+ Sbjct: 190 VVFVKPNRAGSSVGITRVADFTQLEAAVEEAR--RHDPRVIVEAATPGRELECGVLEFLD 247 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-----LPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + + + + +PA IP + +Q A A+GC Sbjct: 248 GPRASAVGEITVSGADFYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCE 307 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+SR DF ++ + ++ EIN PG TP S++P M G S+ EL+ +++ A R Sbjct: 308 GLSRVDFFYNEETDELSLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366 >gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5] Length = 328 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG S ERE++L S SAL+ + ++ ID+ D Sbjct: 6 IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + D A ++HG GEDG +Q L+++ +PY+ + +S ++ DK+ +K+ V Sbjct: 66 SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ + I + + + P IKP GSS G+ + + + Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPAVEA 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + D++LIE+ ++G E+ CG+M L V K DF+ Y+ KY+ S Sbjct: 186 AF--AQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEIVSKKDFFDYQAKYTEGYSDE 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I +I +E+ R+ +A++A C G+ R DF+ P K + +EIN PGM+ SI Sbjct: 244 ITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTPE-GKPYMIEINSIPGMSAGSI 302 Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300 P+ A G + E+ ++ D +C + Sbjct: 303 VPKQAKAMGMTLGEMFDLVIAD-TCRK 328 >gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 348 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ + + + ++ P +KP GSS+GI Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGISKAD 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + ++ + IE+ D + V FY Y+ K Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I I +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355] Length = 353 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + V + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+GC G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEKAFAKR 348 >gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46] Length = 367 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 61/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AV+ GG S E VS S A L++ F+V I + + + Sbjct: 14 VAVIYGGASPEHSVSCVSAGAIMDHLDEDRFRVVPIGITKDGVWTVGTRETDTLRTQGRT 73 Query: 48 --------------------HLKP-------------DLAFNVLHGNFGEDGLVQAILEL 74 + D+ F VLHG GEDG +Q + EL Sbjct: 74 MPEVIPGEEVALSTSPSRRGEFRFVTGDRAGEVFDTVDVIFPVLHGPHGEDGTIQGLFEL 133 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131 I Y G+LASA MDK R+K ++ + G+P+ ++++ + + + P +K Sbjct: 134 SGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQVVLHVGESLSDEDKETLGLPVFVK 193 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--------GVMG 183 P +GGSS+GI + ++ + + H ++++E VDG E+ + Sbjct: 194 PARGGSSIGISRVDDWANLDAAVELAR--EHDWKVIVEAGVDGAEVEIGVLQRADGSLQV 251 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + FY +E KY + +PA++P D+ K + A A +A+G G+ Sbjct: 252 SVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPAELPKDVLKALDTDARRAFRALGSDGL 311 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R DF E+N PG TP+S++P+M A +G ++ ELL ++E A R Sbjct: 312 TRVDFFVT--DNGPIINEVNTMPGFTPISMYPQMFAASGVAYEELLSALIERALVAR 366 >gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 339 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S ER+VSLSSG ++AL + G V +D Sbjct: 3 IIVLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDLYLGINNKHIEPAYINLKSNKTF 62 Query: 38 -----VDRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELL 75 + + + D+ F LHG+ GE+G +QA+L++ Sbjct: 63 SYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLDIN 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 I YT +G + S L+MDK SK+++ S + V+ T I+ P V+KP Sbjct: 123 GIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPCSC 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+G+ +++ + + + + + ++IE+ + G E + G++ +L V P Sbjct: 183 GSSVGVTMVETPSELNSAIEFAK--KYENSVIIEEKIVGREFSVGILNGEALPVI-EIKP 239 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY Y+ KY + + PA I +I +Q A H + SR DF+ D + Sbjct: 240 LIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQSNN 299 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + LE N PGMTP S+ P+ A ++ +L + Sbjct: 300 A-YCLEANTLPGMTPTSLLPQEALANDITYSDLCEKI 335 >gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora] gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora] Length = 355 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 46/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVD----------------R 40 + ++ GG S E +VS+ S + AL + + V +D Sbjct: 12 IGLVFGGASGEHQVSIRSAQTLVRALREGTNSERYDVKCFYIDLQGYCWPSIVAESILKE 71 Query: 41 SVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ LHG GEDG +Q + L++ P+T SG Sbjct: 72 DLFNQAIEFTNTSKQKGFRGMPEEADLIDIWCLALHGPNGEDGTIQGLFTLMQKPFTGSG 131 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSIL---------VNRFTMDSQHLISPPYVIKPLK 134 +L SA+SMDK K ++ G+P P I N+ + + P +KP Sbjct: 132 VLGSAVSMDKQAMKACFTAVGLPQVPYICLDILELERIPNKLVNRIEKSLGYPCFVKPAN 191 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSSLGI Q + L +S+++ + IE V Sbjct: 192 LGSSLGISKCNSRQELISGLKLASAYDSRLVVERAVIAREIECAVVGKSVLRASVLGEIC 251 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 ++++Y Y KY+ +S V+PA + + + + L+ A +A+G GI+R DF + + Sbjct: 252 FENEWYDYTTKYTKGSSYMVIPAHLSEETTRRARELSLEACRAVGAYGIARVDFFYVEST 311 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P + +G + EL+ +++ A Sbjct: 312 NNLWVNEINTLPGFTEQSMYPMLWMSSGLTLNELVHQLIKLA 353 >gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928] gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 346 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E +S+ S + A L+ + ++ I + R L Sbjct: 6 IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ DL VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 S L +DK + V+ + G+ + + + P +KP + GSS G+ + Sbjct: 126 TSVLCIDKTLTYLVIQNEGIATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + ++LIE+ V G E+ C V+G + + + + Sbjct: 186 GKDELSGAIEEAR--LYDAKVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALTHGFFKI 243 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + N+T ++PA IP +Q A L ++A+GCRG+SR DF V Sbjct: 244 HQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFL-KEDGTVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PG+T S +P M A AG+ E++ +V Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337 >gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 318 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 18/309 (5%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG S ER+VSL++G+ ALE G +V +DV+ + L L+P F LHG Sbjct: 5 AVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHGP 64 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG VQA+LE L IPYT SG L+S MDK +K+ +++ G+P R M+ Sbjct: 65 GGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNEM 124 Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P V+KP + GSS G+ +++ + + + ++ + ++L+E++ Sbjct: 125 GAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAV--YEAFGYDAKILLERW 182 Query: 172 VDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V+G E++ ++ A P+ Y+++ KY+ + +PA++P + Sbjct: 183 VEGREVSVPILEPAGEAPRALGLVEIRPREGAYNFQAKYTPGMTDFAIPAELPPGTASRL 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + A ++ +GC G +R D + L++ PG T S FP A AG SF Sbjct: 243 EETALAVYRTLGCSGFARVDTIV--EGETPQVLDVKTIPGFTETSTFPLAAEAAGLSFER 300 Query: 288 LLLWMVEDA 296 L+ +++ A Sbjct: 301 LVEIILDSA 309 >gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] Length = 315 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPAGISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928] gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 394 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 82/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHLK------ 50 +AV+ GG SSE +S + + AL + +++ I + VLA L Sbjct: 13 VAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDLN 72 Query: 51 --------PDLAFNV----------------------------------------LHGNF 62 P++ LHG + Sbjct: 73 LAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGPY 132 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121 GEDG +Q +LEL +PY SG+LASA+SMDK K++++ G V P +V ++ Sbjct: 133 GEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTEE 192 Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP + GSS+GI + + + + ++ H ++L+E + Sbjct: 193 GRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAI--DAARRHDPKVLVEAAI 250 Query: 173 DGIELTCGVMGDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 +G E+ CGV+ A FY ++ KY ++ +PA++ + Sbjct: 251 EGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEI 310 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAY 280 ++++ A + +GC G++R DF + + + EIN PG TP S+FP+M Sbjct: 311 EDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQA 370 Query: 281 AGYSFRELLLWMVEDA 296 AG S+ EL+ +++ A Sbjct: 371 AGLSYPELIARLIDTA 386 >gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 374 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A+L GG SSE +SL + A++ + + V I + + L +L+ Sbjct: 10 VALLCGGRSSEHPISLITAVGVLGAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F ++HG FGEDG +Q +LE Sbjct: 70 AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125 L E+PY G+ ASA+ MDK K S G+ V +V + + Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYEVVTDRQWTHEREESLKRITALG 189 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS GI + K + + + ++ H ++++E + G E+ CGV+ Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHDAKIIVEAGIVGREIECGVLDGH 247 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236 ++ + P E PA +P D+ + ++ LA A Sbjct: 248 HGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+ G+SR+DF + P ++ E+N PG TP+S++ M G S+ EL+ ++ A Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366 >gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330] Length = 353 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 REELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae] Length = 358 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S+E +VS+ S + +A+ ++V I + + V L KP Sbjct: 3 ITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKEDL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLTWDPSGKVTDGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETLNLPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA++P ++Y++ Q A +A+ +G G+SR DF Sbjct: 243 KDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405] gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057] Length = 353 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 347 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 43/335 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + +L GG S+ER+VS+ S ++ A+ F V + +S + + D Sbjct: 5 IILLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSG-DFIKTQEFDQTPSQDER 63 Query: 53 -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + F VLHG GEDG VQ LE+L++PY IL+S+L Sbjct: 64 LMTNETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSL 123 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIV 143 +MDK+ +K+V+ S G+ P + + + + ++ P KP GSS+GI Sbjct: 124 AMDKITTKRVLESAGIAQVPYVAIVEGDDLVSKIAEVEEKLNYPVFTKPSNMGSSVGISK 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYS 201 + + L + + ++L+EQ V+ E+ G++G+ + + V FY Sbjct: 184 SENQAELRQALDLAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYD 241 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PAK+ D+ +++ A A +AIG G+SR DF + +VF E Sbjct: 242 YEAKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNE 300 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T S++P + G + EL+ +VE A Sbjct: 301 LNTMPGFTQWSMYPLLWDNMGIPYPELIERLVELA 335 >gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512] Length = 358 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL + I + R +L+ Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMRALAPEKYDAVPIFISREGQWLLSSFVDGALATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG +GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGRGRMMAIPTGGTPHDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ V S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTVRADAAPSLATLESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q L ++ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLEDAAGDLFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA++P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G S+ E++ +V+ A R Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMARAGR 356 >gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 348 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ + + + ++ P +KP GSS+GI Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKAD 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + ++ + IE+ D + V FY Y+ K Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I I +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 356 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 140/340 (41%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E ++S+ + ++ + + + + ++ + Sbjct: 3 IVLLYGGQSAEHDISIMTAQSIIKHINYQKHTLLPVYISQANQWIKGPAIDRAPEADLPL 62 Query: 46 -----LAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L P+ +AF LHG GEDG +Q + E L +PY +G+ Sbjct: 63 RFNPELDANDPEHGDLVSPCQVFNGEEVIAFPALHGPHGEDGKIQGLFESLNVPYVGAGV 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKG 135 L+SA MDK+ SKQ+ +P P + + D + + P +KP Sbjct: 123 LSSAAGMDKIISKQLFQQAQIPQVPFTALTHYEWDQERAKSLTRIEGELVYPIFVKPANL 182 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + +++ + +E+ V V Sbjct: 183 GSSVGISCANDREELIQAIELAFNYDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEVVK 242 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 FY+YE KY + +PA +P +I +++ A A+ AI G++R DF + Sbjct: 243 SKSFYNYEEKYINNTVELAIPADLPGEIMDKIRAYAAKAYAAIDSSGLTRVDFFVT-HNM 301 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++ E+N PG T S++P + G + +LL +++ Sbjct: 302 DIYINEVNTMPGFTQWSMYPSLWEATGIPYDQLLERLIQL 341 >gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 353 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115] Length = 353 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150] Length = 353 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A +A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4] Length = 317 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 30/318 (9%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVGLVL- 46 MGG SSE ++SL SG + L + +I + D++ VL Sbjct: 1 MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60 Query: 47 --AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q+ +L+ +P T +AL+ +K V+ G Sbjct: 61 NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N + ++ I P +K K GSS GI + + + + + + Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEKLNAAIDIAF-- 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVLPAK 218 ++++IE ++DG E++ GV+ + + S + PA+ Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEIVSENDFFDYEAKYLGKSQEITPAR 238 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I + +V +A + + +G +RS+F+F + LE+N PG+T SI P+ A Sbjct: 239 ITKEQENKVTTVAKKIYNVLKMKGYTRSEFIF--KDGEPHLLEMNTIPGLTNESILPQQA 296 Query: 279 AYAGYSFRELLLWMVEDA 296 A AG + L +E+A Sbjct: 297 AEAGITMEALFDSAIEEA 314 >gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160] gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408] Length = 353 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------------------- 43 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 44 ----LVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679] Length = 358 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S +P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSTYPLLWENMGLKYGDLIEELIQL 342 >gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191] gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191] Length = 353 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 41/339 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVS+ S L + V I + + Sbjct: 6 IAVVYGGKSVEHEVSVHSAADVCGIL-SKKYNVINIFISKEGLWFAQEKCGPAQPSDINV 64 Query: 49 -----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + D+ F VLHG GEDG +Q + EL+E PY G++ASA+ M Sbjct: 65 TPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGM 124 Query: 92 DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK SK + + GVP P I + + P +KP+ GSS+GI +K Sbjct: 125 DKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGYPVFVKPVNLGSSIGITKVK 184 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + +++ + + + + + + + Sbjct: 185 EEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFFDY 244 Query: 206 YSSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +S + PA + + K +Q+ + + + G +R DFL ++++ E Sbjct: 245 HSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLL-GKDGQIYFSE 303 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 IN PGM+ S+FP++ AG + ++L ++ A R Sbjct: 304 INTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRR 342 >gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae 3841] gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv. viciae 3841] Length = 358 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E +VS+ S AL+ + + + R +L+ Sbjct: 10 IAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG +GEDG VQ E+ +P G Sbjct: 70 TEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAVPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q + L ++ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEVAPALAEAF--RHDRTLLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA++P ++ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPAELPQEVETAMRDVAAKAFRAVGCDGMARIDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G ++ E++ +V+ A R Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGMARARR 356 >gi|741411|prf||2007289B D-Ala D-Ala ligase Length = 348 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 349 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 153/345 (44%), Gaps = 53/345 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG SSE EVSL S ++ F + + + + +L Sbjct: 7 LIFGGQSSEHEVSLKSVTTIYENIDHELFDIYPVGITKEGKWLLYRGAXFNFTENNWQEK 66 Query: 49 -----LKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L PD+ F ++HG +GEDG +Q + L ++P+ Sbjct: 67 GVPCILSPDVTHHGLLLLRDAQDIVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFVGC 126 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLK 134 G+L+SA+SMDK +K V G+ + +N+ + PY +KP Sbjct: 127 GVLSSAISMDKSFTKIAVEKTGIRQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKPAN 186 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI + + + L ++ ++L+E+ + G E+ V + + Sbjct: 187 AGSSVGINKVHNKRELEHALRVAA--KEDAKILVEETIIGREVEVAVLGNEELQISGVGE 244 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + ++FY ++ KY++ S V+ A++P +I + ++ A ++A+ +G+SR DF Sbjct: 245 ILAAAEFYDFDAKYNNAESKTVICAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFVTE 304 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + + EIN PG T +S++P + G S + L+ ++ AS Sbjct: 305 -TGDMIFNEINTMPGFTKISMYPMLFEDFGISIKNLITELINLAS 348 >gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10] Length = 387 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S E VSL S A S ++ + I + +S L Sbjct: 44 IAVIFGGCSPEYSVSLQSAYAVISHMDTEVYTPVLIGISQSGDWFLYEGDIEKIVSDTWC 103 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D AF VLHG GEDG +Q + E+ IP Sbjct: 104 GGKDCTPVVVSPNRTSHNLLLLENGKVKKLHIDAAFPVLHGRNGEDGTIQGLFEMAGIPV 163 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLK 134 G+L+SAL MDK R+ ++V + G+ V S ++ + I P +KP+K Sbjct: 164 VGCGVLSSALCMDKDRAHKLVHTAGIAVPSSFVLGKSASVATALQQAEKIGYPLFVKPVK 223 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS GI + +P L + + ++++E+ + G E+ C + D ++ + Sbjct: 224 AGSSFGITKVSSSNELPAALELAF--EYDKRVIVEECISGFEVGCAILGDEDLTVGEVDE 281 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 F+++ KY+ S +PA+IP + +++++ A ++ + C+G +R D P Sbjct: 282 IELSGGFFNFTEKYTLKTSAIHVPARIPQNTAEQIKQAAKTIYRTLDCQGFARVDLFLTP 341 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ + E+N PG T S +P M AG++F +++ ++E A Sbjct: 342 -SGEIVFNEVNTIPGFTTHSRYPNMMKAAGFTFEQIVSALIEQA 384 >gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 359 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 81/329 (24%), Positives = 146/329 (44%), Gaps = 37/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E E+S S A L + +V I +D+S Sbjct: 11 VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70 Query: 52 ---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D+ ++VLHG +GEDG +Q + E+ ++PY + ASA++MDK+ + Sbjct: 71 NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130 Query: 97 KQVVSSCGVPV--------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 K V G+ ++ + P +KP GSS+GI ++ Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + + + +L+IE+ + G E+ V G+ + + + Y++ Sbjct: 191 KLKKAIEDAFQ--YDYRLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYDVDAKY 248 Query: 209 L---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ ++PA I + K +Q A +A +AI C+GI R D S ++F E+N Sbjct: 249 HSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNTM 308 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG T +S++P++ +G S +ELL ++ Sbjct: 309 PGFTEISMYPKLWEVSGISNKELLERIIN 337 >gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756] gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium 3_1_46FAA] Length = 350 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIAKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYV 129 +LL I YT L A++MDK +KQV G+ + +++ + D ++ P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP GGSS+G+ ++ ++ L +S + D++++E+Y+ G E CGV+ + +L Sbjct: 183 IKPCSGGSSIGVYIVSTEEEYAEALEKSFF--YEDEVVVEEYIKGREFACGVIDNEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY + + V PA IP + + L A +A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDEKGN-LYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIKKSLEAR 349 >gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-63q42] Length = 366 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 69/360 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65 Query: 45 -------------------VLAHLKPDLA-------------------------FNVLHG 60 ++ L PD F VLHG Sbjct: 66 ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ + EL I G L+SAL MDK +S ++V S G+ V SIL+ + Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P IKP++ GSS GI I K + + + + ++ H ++++IE+ +DG E Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243 Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + C V D + + F+ Y KY+ +S +PA+I LD K +Q A + Sbjct: 244 VGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GC G +R D P S ++ + E+N PG T S +P M G SF E+L ++E Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362 >gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus vestibularis F0396] Length = 348 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 EAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA +P ++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9303] gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303] Length = 353 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + V+ GG S E VS+ S AL F+V I +D+ VL Sbjct: 8 VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +P + + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 GQPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKP 132 +L SALSMDK+ K ++ G+P P V+ + + + P +KP Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYFAVDAADLLDTESRQGVAKNLEAKLKYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L +++S + + +E + V Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDRRIVVEQGVSARELECAVLGKRELQTSVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y Y+ KYS S ++PA +P + +++ LA A + + G++R DF ++ Sbjct: 248 ICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFYNA 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + EL+ +V A Sbjct: 308 ARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351 >gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-66c26] gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CIP 107932] gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-76w55] gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-97b34] gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-37x79] gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196] gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile R20291] gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile CD196] gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile R20291] Length = 366 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 69/360 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65 Query: 45 -------------------VLAHLKPDLA-------------------------FNVLHG 60 ++ L PD F VLHG Sbjct: 66 ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ + EL I G L+SAL MDK +S ++V S G+ V SIL+ + Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P IKP++ GSS GI I K + + + + ++ H ++++IE+ +DG E Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243 Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + C V D + + F+ Y KY+ +S +PA+I LD K +Q A + Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GC G +R D P S ++ + E+N PG T S +P M G SF E+L ++E Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362 >gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4] Length = 316 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 20/313 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GE+G VQ +LE+L++P+ + + DK +K V G I++ T Sbjct: 66 GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125 Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V+++ +P + + +GD +L E+ Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAM--VGCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +VDG+E+ V+ + VP+S Y Y +Y++ + PA+I + K V Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEIVPESGVYDYTARYTAGLTDFFTPARISDEAAKAV 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS--- 284 LA AH+ +G R ISR+D + P V +LE+N+ PG+T S P AG + Sbjct: 244 SELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTLGS 302 Query: 285 -FRELLLWMVEDA 296 F +L+ V A Sbjct: 303 VFADLVARAVARA 315 >gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parauberis NCFD 2020] Length = 348 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPD------ 52 +L GG S+EREVS+ S ++ A+ F V + + KPD Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQELSQKPDDNEKLM 66 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V++S G+P + + P +KP GSS+GI + Sbjct: 127 DKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGISKAE 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + + ++LIEQ V E+ G++G+ S+ T V FY Y+ Sbjct: 187 TEMELKEAIGLAL--KYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEVVKDVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA+I +I KE++ A A +A+G G+SR DF ++ E+N Sbjct: 245 AKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G + +L+ +V+ A Sbjct: 304 TMPGFTQWSMYPLLWENMGLVYSDLIEELVKLA 336 >gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4] Length = 368 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 71/366 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG SSE VS S A L+ + ++V + + + L Sbjct: 6 VAVLYGGRSSEHSVSCVSAGAVMGHLDRSRYEVIPVGITEAGAWTLGSDDTADLRIADRI 65 Query: 47 ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73 + D+ F V+HG EDG +Q +LE Sbjct: 66 MPVVDAGRPRVALGLSTDDRGVLRFADGDRAGQEIARVDVVFPVMHGTHAEDGTIQGLLE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129 L IPY G+ ASA MDK +K V+ + G+P+ +++ T + + P Sbjct: 126 LSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQVVLRPGTATLSPADRDRLGLPLF 185 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------- 179 +KP +GGSS+GI + + + + ++ +++++E + G E+ C Sbjct: 186 VKPARGGSSIGITKVSRAADLDAAIAEAR--RFDEKVIVEAAIVGREIECGVLEYPDGRV 243 Query: 180 ------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 + E FY ++ KY +T LPA +P + ++++ LA Sbjct: 244 EASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVTTFDLPADLPAEQTEQLRTLAVE 303 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A A+ RG+SR DF E+N PG TP+S++P+M A G + LL ++ Sbjct: 304 AFHALDARGLSRVDFFVTAEG--PVINEVNTMPGFTPISMYPQMWAATGVDYESLLDTLI 361 Query: 294 EDASCL 299 A Sbjct: 362 RTAIAR 367 >gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 372 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 146/363 (40%), Gaps = 67/363 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ GG S E VS ++ A++ + V + + RS VLA Sbjct: 8 VAIVFGGRSGEHAVSAATAAGVLGAIDRGKYDVVPVGITRSGEWVLAADDAGALEIRDGH 67 Query: 49 -----------------------------------LKPDLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q +LE Sbjct: 68 VPEVDATGDGRLLVPFGSGPAQLVVLSPGAPPNELAGVDVVLPLLHGPFGEDGTIQGMLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126 L +PY SG+LASA MDK K V++ G+PV P ++ Sbjct: 128 LAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSAWRRDRAACLDQVASLG 187 Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP + GSS+GI ++ + + ++ H ++++E + G E+ V+ Sbjct: 188 LPVFVKPARAGSSIGITRVESLDRLVEAIEEAQ--RHDPKVIVEAAITGREIEVAVLEGR 245 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236 + +P + PA +P + E +RLA A Sbjct: 246 GDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGVDLRCPADLPPGVADEARRLAAEAFD 305 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GC G++R DF + P S + EIN PG TP S+FP + +G ++ EL+ +++ A Sbjct: 306 ALGCEGLARVDFFYTP-SGTLVVNEINTMPGFTPFSMFPLLWERSGVAYPELIDELLQLA 364 Query: 297 SCL 299 Sbjct: 365 LAR 367 >gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 352 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 157/351 (44%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG+S+ER+VSL+S L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGL 62 Query: 41 SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + ++ +PDLA F LHG GE+G +QA Sbjct: 63 EIAKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129 +LL I YT L A++MDK +KQV G+ + +++ D +S P V Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + L +S + D+++IE ++ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTEDEYKDALEKSF--RYEDEIVIETFIKGREFACGIIDGEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY + V PA IP DI + + L A A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDDQ-GSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQKSIEAR 349 >gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b] gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b] Length = 308 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 152/302 (50%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V ID ++ V + L D + L Sbjct: 6 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + + Sbjct: 66 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 125 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + V+KP GGSS+G+ ++ + + L + LIE+ + G Sbjct: 126 VDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELVFGM--DKEALIEEVLHG 183 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +E++ V+ I D++ YE KY+ + + + P ++ E+ + A + Sbjct: 184 VEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFAKDS 242 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L ++E Sbjct: 243 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIE 301 Query: 295 DA 296 + Sbjct: 302 SS 303 >gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74] Length = 389 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 149/362 (41%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS+ + A ++ + V I + LA +P Sbjct: 24 VAVVFGGRSSEHGVSVVTAGAVLGVIDREKYDVLPIGITGEGRWALAADEPARMAITDRS 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F +LHG +GEDG +Q Sbjct: 84 MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL PY +G+LASA+ DK K++ +S G+ V P +++ Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPEAARRRIA 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + + + ++ H + LIE V G E+ Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFEGLDEAIEEAR--RHDPKFLIEALVQGREIE 261 Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 C + P +D Y +++ ++PA + + EVQRLA A Sbjct: 262 CGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF E+N PG TP+S++P+M +G + EL+ +++ Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEVNTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379 Query: 295 DA 296 A Sbjct: 380 AA 381 >gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1] Length = 356 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 YLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii] Length = 343 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AVL GG S E VS+ S A+ ++ ++ I + +S Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 45 -------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ K D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 K + + + ++ + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 186 KAEELQAAIEEAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ E+L ++E + Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340 >gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9313] gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313] Length = 353 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLA--------- 47 + V+ GG S E VS+ S AL F+V I +D+ A Sbjct: 8 VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67 Query: 48 ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + + + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 GHPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKP 132 +L SALSMDK+ K ++ G+P P V+ + + P +KP Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYAAVDAADLLETESRQGVAKHLEAKLKYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + + L +++S + + +E + V Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDRRIVVEQGVSARELECAVLGKRELQTSVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y Y+ KYS S ++PA +P + +++ LA A + + G++R DF ++ Sbjct: 248 ICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFYNA 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S++P + +G + EL+ +V A Sbjct: 308 ARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351 >gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489] Length = 376 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E E+SL S + + A VS I + + L Sbjct: 3 VVLIYGGKSGEHEISLLSCASVIRNI-SAKHNVSLISISKGGKWYLEDDSVFKEIRNNPE 61 Query: 49 -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + D+ F VLHG +GEDG VQ + E+ + Sbjct: 62 AALCVHENESREVKVSFGRGKDNVFFACGNYIPCDVVFPVLHGTYGEDGTVQGVFEMAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126 P+ G+LAS+ +MDK +K ++ + G+PV P + ++R ++S + Sbjct: 122 PFVGCGVLASSAAMDKETTKILLKNAGIPVVPYMCISRSQINSSSLYDKLIEEAIEKLEF 181 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV----- 181 P +KP GSS G + + + + L+++ SW +++LIE+ +D E+ C V Sbjct: 182 PLFVKPCAAGSSDGASLARNKRELSFALMEAFSW--DNKVLIEKAIDAREVECSVTGNSV 239 Query: 182 -------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFL 233 VPK DFY Y+ KY+ + +PA + D + ++ A Sbjct: 240 TATSESDCTLLKAYGPGEIVPKHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKK 299 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A+ I G+SR DF D + +++ EIN PG T +S+FP+M G + EL+ +++ Sbjct: 300 AYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFTKISMFPKMCDADGLEYSELIDYLL 359 Query: 294 ED 295 ++ Sbjct: 360 KE 361 >gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii] Length = 348 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 153/341 (44%), Gaps = 51/341 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 AV+ GG S+E VSL S + + ++V I + R Sbjct: 7 AVIFGGNSTEYGVSLQSAFSVLENVNQEKYEVIPIGITRQGSWYRYGGAYGKIPDDTWMR 66 Query: 45 -------VLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 V+ H P DLAF VLHG GEDG VQ +LEL IP Sbjct: 67 DEKNLTPVVVHQNPAVHGILELSVWENRVTQLDLAFPVLHGKNGEDGTVQGLLELAGIPI 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKG 135 G+LASAL MDK R+ ++ + G+ V ++++ + + P +KP++ Sbjct: 127 VGCGVLASALCMDKDRAHRLAGAAGISVPKAVVLQKHQKCRAVVLPEDFTYPLFVKPVRA 186 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193 GSS GI I + + + + H D++++E+ VDG E+ C + M ++ + Sbjct: 187 GSSCGIAKIYGEGELDAAVSAAFC--HDDEVIVEENVDGFEVGCAILGMDVLTVGRVDEI 244 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ + KY+ +S +PA+I +++Q A +Q +GC G +R D P Sbjct: 245 ELTGGFFDFTEKYALKHSRIHMPARIDAKTEQKIQETAKNIYQVLGCSGFARVDMFLTP- 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 S V + E+N PG T S +P M G SF +LL +++ Sbjct: 304 SGDVVFNEVNTIPGFTAHSRYPNMMKGIGLSFEQLLERLLD 344 >gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium] Length = 343 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 142/338 (42%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+L GG S E VS+ S A+ ++ ++ I + +S Sbjct: 6 IAILFGGCSEEHNVSVKSAAEIANNIDIGKYEPIYIGITQSGVWKTCEKPCIDWDNEHCR 65 Query: 50 ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ F+VLHG GEDG +Q + EL IPY I Sbjct: 66 SAVLSPDKKMHGLLIMQDKGYQIQRIDVVFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SA+ MDK + + + G+ ++ + + + P +KP + GSS G+ + Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYGVNKVN 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + ++LIEQ V G E+ C V+G++ + + Sbjct: 186 SADELDSAIDLARQ--YDSKILIEQGVLGYEVGCAVLGNSFDLIVGEVDQIRLQHGIFRI 243 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + N+T +PA++ + + ++ A ++A+GCRG+SR D + ++ Sbjct: 244 HQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFL-QDNGRIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG + EL+ ++ A Sbjct: 303 LNEVNTMPGFTSYSRYPRMMVSAGITIPELIDHLIVLA 340 >gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1] Length = 353 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKIP ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 356 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 153/343 (44%), Gaps = 51/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ + V + + + + L KP+ Sbjct: 3 IILLYGGKSEEHDVSILSAYSILNAIYYEYYTVQLVLITKQGEWIKGPLLTEKPENKEIL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE + +PY +G Sbjct: 63 NLTGAKDENTMAYSSGTSIMPCEIFEKDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V + + + P +KP Sbjct: 123 VLASATAMDKIMTKYLLQTVGIPQTPYVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS+GI ++ + + L + + ++++EQ ++ E+ + D + Sbjct: 183 LGSSVGISKVENREELQKALELAY--KYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGE 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V DFY Y+ KY + +PA++P ++ ++ Q A A++ + G+SR DF Sbjct: 241 VVKNVDFYDYQAKYVDNQISMKIPAELPAEVCRQAQEYAKKAYKTLDGSGLSRCDFFLT- 299 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 300 NKNELFLNELNTMPGFTEFSMYPSLWENMGLKYSDLIEELIQL 342 >gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973] Length = 333 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 138/326 (42%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D A+ +HG GE+GL+Q ELL IPY+ SG+L AL+ +K Q + Sbjct: 68 SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127 Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + V + I P+ +KP GSS G+ +K + L Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 + D+++IE Y+ G E++ G V A + + Sbjct: 188 RNAFM--ESDEVMIESYLKGTEISIGCYKTREKSVVLPATEVVTSNEFFDYDAKYNGQVQ 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMT 269 + PA++ + + V+++ + + C GI R D++ K+ LE+N PGMT Sbjct: 246 EITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTPGMT 305 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + E+L +VE+ Sbjct: 306 ATSFIPQQIRAAGLNITEVLTEIVEN 331 >gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109] Length = 350 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAHLK------ 50 + ++ GG S E VS+ S L + V I +D L Sbjct: 8 IGLVFGGRSGEHNVSIRSAATVVRGLRSGQNRKRYTVQPIYIDLEGRWWGTDLSEATLSS 67 Query: 51 ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 DL + VLHG GEDG +Q + +L P+ +G+L Sbjct: 68 ETAPELNPPLPPSGFQGFPKGCDAVDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKG 135 SA+SMDK+ K +S G+ P + ++ + ++ PY +KP Sbjct: 128 SAVSMDKLAMKSAFASAGLSQVPYVALHASELENAISRSALLDRIERELNYPYFVKPANL 187 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + + L Q+++ + + +E + Sbjct: 188 GSSVGISKVRSRKELEAGLDQAAALDPRLVVEQGVNAREVECAVLGGRMLEASLIGEVRF 247 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y YE KY++ ST ++PA +P ++ ++ A A A+G G+ R DF +D + Sbjct: 248 DADWYDYETKYTAGRSTTLIPAPLPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDAND 307 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S+FP + A +G + +L+ +++ A Sbjct: 308 QLWINEINTLPGFTAQSMFPMLWAASGVTVEQLVHKLIQTA 348 >gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis] Length = 348 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583] Length = 348 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11] gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302] gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341] gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B] Length = 356 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8] gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG] gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1] gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2] gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200] gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3] gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8] gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5] gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96] gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704] gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1] gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6] gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188] gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG] gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613] gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis PC1.1] gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411] gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860] gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134] gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512] gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102] gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470] gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000] gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017] gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141] gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312] gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645] gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346] gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630] gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62] gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF] Length = 356 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894] Length = 349 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 15/309 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG+ A AL G V+ DVD + L +PD+ + +LHG Sbjct: 39 VVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHG 98 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++ +LEL +PY +G AS L+ DK +K+ + + G+ + + + Sbjct: 99 AGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRD 158 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V+KP +GGS+LG+ + + + + +GD LIE+ Sbjct: 159 LGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAM--VDCFAYGDSALIER 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 VDG+E+ V+ V AV Y + +Y+ + PA++ D V Sbjct: 217 AVDGVEIAVSVIDGMDGPVALPAVEIIVDGPYDFDARYNPGRVEYFAPARLSPDQAAHVA 276 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AHQA+ R +SR+D + LE+NV PGMT S+ P+ A AG+ L Sbjct: 277 GVAVAAHQALDLRHLSRTDLIL-QTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTL 335 Query: 289 LLWMVEDAS 297 +VE A+ Sbjct: 336 YRQVVEHAA 344 >gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603] Length = 319 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 157/298 (52%), Gaps = 14/298 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG+S ER+VSL SG+ A AL G VS +DVD + L +PDL + +LHG Sbjct: 7 VVILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GEDG ++ +LELL++PY + S ++ +K +K V+++ GV + + + Sbjct: 67 ASGEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGVLTPSYVTLPQSLFRE 126 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS+LG+ ++ + +P L + +GD LIE+ Sbjct: 127 LGARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQAL--VDCFAYGDLALIEE 184 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E++ V+ + +D Y Y+ +Y+ + + PA++ +I R Sbjct: 185 AITGTEVSVSVVESPDVTALPAVEIITDGPYDYDARYNPGRTQYFTPARLDPEIADAAAR 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A AH +G R +SRSD + D +V++LE+NV PGMT S+ P+ +G S + Sbjct: 245 VALTAHTTLGLRHVSRSDLIIDGK-GQVWFLEVNVAPGMTETSLLPQAVVASGQSLPD 301 >gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478] Length = 370 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 157/360 (43%), Gaps = 65/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 10 VAVVFGGRSNEHAISCVSAGSILRNLDPQRFEVIAIGITPQGSWVLTDGNPDALAITNRQ 69 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 70 LPAVSSESGTLLALPADPQWGGRLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129 L +PY +G+LASA MDK +K+++++ G+PV P ++ D + P Sbjct: 130 LAGVPYVGAGVLASAAGMDKEFTKKLLTADGLPVGPHAVLRPSRPALSLDECERLGLPAY 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + +P + ++ H ++++E V+G EL CGV+ Sbjct: 190 VKPARGGSSIGVSRVSSWDELPAAVAEAR--RHDPKVIVEAAVNGRELECGVLEFPDGTV 247 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY + KY + +PAK+ D+ V+ LA A AI Sbjct: 248 QASTLGEIRVAGVRGREDAFYDFATKYLDDAAELDVPAKVDDDVADAVRDLAIRAFHAID 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C+G++R DF EIN PG T +S++P M A +G + LL MVE A Sbjct: 308 CQGLARVDFFLTEEG--PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 365 >gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638] Length = 359 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 55/345 (15%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-------------- 49 + GG S+E EVSL S K A++ F+V+ + +D+ + Sbjct: 2 IFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALIS 61 Query: 50 -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 + D+ F ++HG GEDG +Q +L + IP+ Sbjct: 62 LNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLK 134 SG++ SA+SMDK +K+++ G+ + P I + R DS + P IKP Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPAN 181 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ ++ + + + ++L+E + G E+ C VMG+ + + Sbjct: 182 QGSSVGVSKVRNAAEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASLCGE 239 Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 Y +N ++PA I ++ +A +A+ C G++R D Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDVFLT 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P V EIN PG T +S++P++ G EL+ ++E A Sbjct: 300 P-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 343 >gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652] gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652] Length = 358 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 53/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL + I + R +L+ + Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALAPEKYDAVPIFISREGQWLLSSIVDGALATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG +GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGRGRMMAIPAGGTPYDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ + S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIRADAAPSLATLESELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q L ++ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLENAAGELFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA++P D+ ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYNYDAKYIDENGAALKVPAELPPDVEATMRDMAAKAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300 + EIN PG T +S++ + A +G S+ E++ +V+ A R Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMARAGR 356 >gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 157/336 (46%), Gaps = 41/336 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 ++VL GG S ER+VS++S AL G +V +D R A + Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV I+ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWIID-PEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + +P L + +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAEELPAALELARRH---GTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + PA +P ++ +E + A AH+ + G SRSDF D ++ +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLDDA-GALWIIEANS 297 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PG+T S+ P+ AA G + EL + A R Sbjct: 298 LPGLTATSLLPQSAAAVGIGYPELCDRIARIALRGR 333 >gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC BAA-613] Length = 372 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 53/341 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AV+ GG SSE VS S ++ + V + + + Sbjct: 26 AVIFGGQSSEHIVSCMSAVNVIEHIDRTRYDVLLVGITEDGHWIKADSLEDVKNGTWRDK 85 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + ++ D+ F VLHG +GEDG +Q +LEL +IPY G Sbjct: 86 TVSALLLPDATKKCILLMDGDSVREVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCG 145 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135 +L+SA+SMDK+ +K +V GV V R + + S P IKP Sbjct: 146 VLSSAVSMDKLYTKIIVDDLGVRQAAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNA 205 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTE 191 GSS G+ Q++ L +++ H ++L+E+ + G E+ C V + Sbjct: 206 GSSRGVTKADDRQALEAGLSEAA--RHDRKILVEETIIGREIECAVFGGGLKEVVASGVG 263 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++FY +E KY + S V ++P + V++ A +A+ G++R DF Sbjct: 264 EILAAAEFYDFEAKYYNEESRTVTDPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFV- 322 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +V + EIN PG T +S++P + G + +L+ + Sbjct: 323 KDDGEVVFNEINTMPGFTAISMYPMLWEARGITKDQLVDML 363 >gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 354 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 54/345 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 AV+ GG+SSE +S S A + L +K+ + + + V P Sbjct: 8 AVIYGGMSSEHSISCISAGAIMAELPKDKYKIFPVGITQDGVWVEGTTDPVGDSQLPSVA 67 Query: 52 -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D F VLHG +GEDG +Q +L+L +PY Sbjct: 68 GEREVALSVNPSRRGEFYDARTGEVLATIDAVFPVLHGTYGEDGTIQGLLDLAGVPYVGP 127 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSL 139 G+L+SA SMDK +K V S VPV +++ P +KP +GGSS+ Sbjct: 128 GVLSSACSMDKQFTKIVARSADVPVTREVVLVDDEHLDDSDRDYLGLPVFVKPARGGSSI 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----- 194 GI + + + + + +++IE + G E+ GV+ + D+ Sbjct: 188 GINKVDSWDQLDDAVRFAR--LYDSKVIIEAELVGDEVEVGVIERPNGDLIASPPAKLNG 245 Query: 195 ---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + FY +E KY T +PA + +++ LA +A+ CRG++R DF Sbjct: 246 TSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEELAIRTFRALDCRGLARVDFFVT 305 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T +S+FP++ AG S+ ELL ++ A Sbjct: 306 SEG--PMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLETLIATA 348 >gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT 9515] gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515] Length = 355 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S+E VS+SS K AL F++ +++ + Sbjct: 9 IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 L D+ F +LHG GEDG + +L+ + P Sbjct: 69 NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIK 131 GI SA+ MDK+ KQ+ S+ +P + + + + + ++ P +K Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSSLGI K I L ++ + + V +E S Sbjct: 189 PANSGSSLGISKAKNKSEIIKALQKAWEIDSRIVIEEGLNVRELECGIIGNLKLSTSKIG 248 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 SD+Y Y+ K S ++ ++PA I I ++++ LA + +A+ G +R DF + Sbjct: 249 EVSYSSDWYDYDSK-YSTDNKIIIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFFLE 307 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +SRK+F EIN PG T S+FP + +G + +L+ +++ Sbjct: 308 KISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350 >gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353] Length = 353 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S L+MD Sbjct: 73 NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + ++ P KP GSS+GI + Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V E+ G++G+ + T V FY YE Sbjct: 193 RAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI ++ +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025] Length = 349 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 44/335 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52 +L GG S+ER+VS+ S ++ A+ F V + ++ + + D Sbjct: 7 VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 MDK+ +KQ + V + + + + + P +KP GSS+GI Sbjct: 126 MDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 185 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201 + + + + + ++LIEQ VD E+ G+ D + V FY Sbjct: 186 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 243 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ E Sbjct: 244 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T S++P + G S+ +L+ +V A Sbjct: 303 LNTMPGFTQWSMYPLLWENMGLSYSDLIEELVSLA 337 >gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 158/313 (50%), Gaps = 19/313 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V+ GG++ ER+VSL SG+ A+ L G V D++ +A +PD+ + ++HG+ Sbjct: 9 VVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHGSV 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q +LEL+ PY S A L+ K +K + + G+ I + + Sbjct: 69 GEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQVG 128 Query: 121 -----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + +S P ++KP GGS+LG+ + + + + ++ +GD +++E Sbjct: 129 APAVLQAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAM--VDAFAYGDTVMVE 186 Query: 170 QYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Q++ G E+ V+ L V Y Y+ +Y++ S PA++ D EV Sbjct: 187 QFIPGREIAVSVVDLDELYALPPVEIVTDDGRYDYDARYNTGRSQFFAPARLTADETAEV 246 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 QR+A H+ +G R +SR D + +++ +++NV PGMT S+FP+ A AG SFR+ Sbjct: 247 QRVALEVHELLGLRHLSRVDLIL-GEDGQIYLIDVNVAPGMTDTSLFPQAAEAAG-SFRD 304 Query: 288 LLLWMVEDASCLR 300 +L + A + Sbjct: 305 ILGEIAAFAVSDK 317 >gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA] gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA] Length = 353 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 145/343 (42%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG SSE VS S ++ + + + + + Sbjct: 6 VAVIFGGQSSEHIVSCMSAVNVIEHIDSTRYNIVLVGITEEGHWIKTESLEDVKSGAWRD 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + +K D+ F +LHG +GEDG +Q +LEL IPY Sbjct: 66 GKVWAVLPPDATKKCILLMDGDNVEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +VS G+ V R + P IKP Sbjct: 126 GVLASAVSMDKLYTKIIVSDLGIRQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS GI Q + LL+++ H ++L+E+ + G E+ C V Sbjct: 186 AGSSRGISKAGNRQELEAGLLEAA--RHDRKILVEETIVGREVECAVFGGGSHGIEASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY ++ KY + S V +P ++V+R A +A+ G++R DF Sbjct: 244 GEILAAAEFYDFDAKYFNEESRTVTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +V + EIN PG T +S++P + G +L+ ++ Sbjct: 304 -KDNGEVVFNEINTMPGFTAISMYPMLWEARGIGKDQLVGMLL 345 >gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei F0415] Length = 348 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 37/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ F V + ++ + A Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE+L +PY + +L+S+++MD Sbjct: 68 NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V+ S GVP + ++ ++ P +KP GSS+GI + Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFVKPANMGSSVGISKAET 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D + L + ++ + IE+ V FY YE KY Sbjct: 188 DGELREALELALKYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYEAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + +PA++P ++ +++ A A +AIG G+SR DF S +++ E+N P Sbjct: 248 IDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTE-SGEIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 G T S++P + G +++L+ + Sbjct: 307 GFTQWSMYPLLWENMGLPYKDLITEL 332 >gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol] Length = 356 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEEIGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LASA +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110] Length = 349 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 147/347 (42%), Gaps = 57/347 (16%) Query: 1 MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLV----- 45 + +L GG S E EVS++S G+ + + + + + ++ + Sbjct: 6 VGLLFGGRSGEHEVSINSAAAIAQALQIGEN------GSKYDILPVYIQKNGVWLAGDTA 59 Query: 46 -------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L P ++ VLHG GEDG +Q +L L+++P+ Sbjct: 60 SKVLETKTPLSTEDTNPSQLWQFPPQVQEVEVWVPVLHGPNGEDGTIQGLLRLMQVPFVG 119 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYV 129 SG+L SA+ MDK+ K + G+P V R + S I P Sbjct: 120 SGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCF 179 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI ++ + L ++S++ + +E + V Sbjct: 180 VKPANLGSSVGIAKVRSHSELETALDSAASYDRRIVIEAGVNARELECAVLGNDNPKASV 239 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + DFY YE KY+ S +PA +P I ++Q +A A + + G++R DF Sbjct: 240 VGEVTFEGDFYDYETKYTEGRSQIHIPANLPDKIVTQIQEMAIQAFKTVDAAGLARVDFF 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + +++ EIN PG T S++P++ G +F +L+ +V+ A Sbjct: 300 YVEETEEIYLNEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 346 >gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 326 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 164/301 (54%), Gaps = 9/301 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VLMGG EREVSL +G+A +ALE G V+++ + +L + D+AF LHG Sbjct: 5 VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117 GEDG VQ +LELLE+PYT SG+LASAL+M+K +K++ +P + R Sbjct: 65 RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124 Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V+KP GGSSLG+ ++++ +++ + + + +G + L+E++V G E Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAV--AEACRYGGEALVERFVRGRE 182 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 +T G++G L EIA P+ + YE KY + + P + A + Sbjct: 183 VTVGILGGEVLGSCEIAAPRE-GFDYEAKYKGGTNYFLPPRLSATRLANVESLAL-SAWR 240 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A+GCRG R D + LE+N PG+TP S+ P++AA G F +L+ ++ A Sbjct: 241 ALGCRGYGRVDLICSEEQNDF-VLEVNTLPGLTPTSLLPKIAAQRGIGFAQLVERILGLA 299 Query: 297 S 297 + Sbjct: 300 T 300 >gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 360 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 157/354 (44%), Gaps = 62/354 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 AV+ GG S E +S S + +AL+ ++V + + R+ VL Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 47 --------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILEL 74 A D+ F VLHG +GEDG +Q +LE+ Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIK 131 IPY + + ASA +MDK +K++ ++ G+PV P T + + P +K Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQRLGLPVFVK 181 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS GI + + + + ++L+E V G E+ CGV+ + V E Sbjct: 182 PSRAGSSFGITRVTDWADLDDAVANARKI--DPKVLVESAVIGREIECGVLEAEAGGVPE 239 Query: 192 -------IAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V DFY +E KY + + +PA +P + ++VQ A A A+ C G Sbjct: 240 ASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCAG 299 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R+DF P V+ E+N PG TP S+FP M A +G +++L+ ++ A Sbjct: 300 LARADFFVTPELD-VYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352 >gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1] Length = 350 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG+ E VS+ S + A L+ ++ I + +S L Sbjct: 6 VGIIFGGVFEEHPVSVKSAQEVARHLDTDRYEPYWIGITKSGDWRLCDGPEASWEDGAHR 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 ++ D+ VLHG GEDG Q + EL IPY Sbjct: 66 PVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVLPVLHGKLGEDGAPQGLFELSGIPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141 + +SAL MDK + VV+ G+P + ++ P +KP + GSS G+ Sbjct: 126 CDVQSSALCMDKSLAYTVVAEAGIPTPTFWTLYPGDEIDPGVLPYPVFVKPARSGSSFGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + + + +++LIE+ V E+ C ++G+ + VT + + Sbjct: 186 SKVSSAAELDEAIATAR--QYDEKVLIEEGVVAEEIGCAILGNGADLVTGEVDHVALSHG 243 Query: 202 YELKYSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + + N+T ++PA IP + + V+ A ++A+GCRG++R D Sbjct: 244 FFKIHQEDAPETGSENATFIVPADIPAEAQELVKTEAQRVYRALGCRGLARVDMFL-KAD 302 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V E+N PG+T S +P M A AG S ELL + A Sbjct: 303 GTVVLNEVNTLPGLTSYSRYPRMMAAAGISMTELLDRAITLA 344 >gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58] gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58] Length = 379 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDVLP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 G+LASA+ MDK K + + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVSFQAAGLEVGAWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS GI + + + + ++ ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGSAAPR 256 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++P +++ + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 348 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++MD Sbjct: 68 NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S +P + + L +S P +KP GSS+GI + Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G S+ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336 >gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833] Length = 316 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 16/308 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A L AG V D D + + P+ AF LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTDAGLVPAVLADPPEAAFVALHGGV 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++++LELL +PY + A ++ DK +K VV S G+ S+ + + T Sbjct: 69 GEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG +++ + +P + + +GD LIE+Y+ Sbjct: 129 ASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAM--VGCFAYGDTALIEKYI 186 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG+E++ V+ VP Y Y +Y++ + PA++ + + + Sbjct: 187 DGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEACKA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R +SR+D + D S + ++LE+NV PGMT S+FP AG + Sbjct: 247 MAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGTVF 305 Query: 290 LWMVEDAS 297 ++E A+ Sbjct: 306 RVLLERAA 313 >gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017] gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 365 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 149/356 (41%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S+E +S S + + L+ F+V I + + G VL P Sbjct: 8 VAVVFGGRSTEHTISCVSAGSIMANLDPDRFEVVPIGITQEGGWVLGTNDPEQLRIKGRE 67 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F LHG FGEDG +Q +LEL Sbjct: 68 LPVVEHGKTLVLAGDPTTGGVLSLTAGEPAEVLSGVDVVFPALHGAFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131 +IPY SG+ ASA +MDK +K+++++ G+ V +V R + + P +K Sbjct: 128 DIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQDTLPAEERERLGLPVFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS+GI + + + + ++L+E G E+ CGV+ A V Sbjct: 188 PARAGSSIGISRVTDWSQLDAAIAHARQT--DPKVLVEAETVGREVECGVLEFADGRVEA 245 Query: 192 IAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + S + T +PAK+ I + ++ +A A A+ C+G+ Sbjct: 246 SFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKLDDTITERLRDMAVRAFTALECQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF P + E+N PG TP S +P+M G + LL +VE A Sbjct: 306 ARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWEVTGIDYPTLLTTLVETALAR 360 >gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis Il1403] gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis Il1403] gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 349 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ + F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67 Query: 46 --LAH-----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 LA K + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203 + L ++ + ++++IEQ VD E+ C V+G+ S V +FY Y Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+P D+ +++Q A A++A+ G+SR DF V+ EIN Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVT-KDGNVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile ATCC 43255] Length = 366 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 100/360 (27%), Positives = 156/360 (43%), Gaps = 69/360 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWYHYIGDYNNIQNNTWF 65 Query: 45 -------------------VLAHLKPDLA-------------------------FNVLHG 60 ++ L PD F +LHG Sbjct: 66 ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPILHG 125 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ + EL I G L+SAL MDK +S ++V S G+ V SIL+ + Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P IKP++ GSS GI I K + + + + ++ H ++++IE+ +DG E Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243 Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + C V D + + F+ Y KY+ +S +PA+I LD K +Q A + Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ +GC G +R D P S ++ + E+N PG T S +P M G SF E+L ++E Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362 >gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 360 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 59/352 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 V+ GG S+E EVS S + A ++ +++ + + + LA Sbjct: 9 VIFGGRSTEHEVSCRSVQNIARDVDRERYELVLLGITKEGEWRLAEDLSSIEDGSWREGK 68 Query: 49 ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 + D+ F LHG +GEDG +Q + EL IPY SG+ Sbjct: 69 RAMLLPDASLRSLLIFEKDGSSRLQRIDVIFPALHGKYGEDGSIQGLFELSGIPYVGSGV 128 Query: 85 LASALSMDKMRSK------------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 LASA+SMDK+ +K + V + + P +KP Sbjct: 129 LASAVSMDKLFTKVIAAQPLKKLGLRQARCLPVDAAELGRMEEILNRVEKSFQYPVFVKP 188 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG----VMGDASLD 188 GSS G+ ++K + +P L ++ +LL+E+ V G EL C Sbjct: 189 ANAGSSCGVSRVEKREELPDALRAAAKV--DRKLLVEETVYGRELECALLRGPDMKIHAS 246 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + FY Y+ KY++ +S + ++ + + ++ A A+ G++R DF Sbjct: 247 GLGEIRAAASFYDYDAKYNNPDSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDF 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + EIN PG T +S++P + G REL+ +++ A C R Sbjct: 307 FLTEDG--PVFNEINTLPGFTAISMYPMLWEAKGIGKRELIQRLIDSA-CQR 355 >gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC 29176] Length = 352 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 152/351 (43%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------VDR-- 40 + VL GG+S+ER+VSLSS L + G +D D Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGL 62 Query: 41 SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72 + ++ +PDLA F LHG GE+G +QA Sbjct: 63 DIVKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129 +LL I YT L A++M K +KQ+ GV ++ P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L S + D++++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYQNALEHSFH--YEDEIVVEPYIKGREFACGIIDGKALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY + V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A AG + +L +++ + R Sbjct: 300 LDAE-GSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIKKSMEAR 349 >gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 349 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203 + L ++ + ++++IEQ VD E+ C V+G+ S V +FY Y Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+P D+ +++Q A A++A+ G+SR DF V+ EIN Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVT-KDGNVYLNEIN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112] gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112] Length = 382 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 11 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D F V+HGN GEDG +Q + +LL PY S Sbjct: 71 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P + + + + +KP K GS Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 190 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + +++ + + + + AV Sbjct: 191 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 250 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 251 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 309 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 310 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 351 >gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016] gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 378 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P + + + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + +++ + + + + AV Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136] Length = 326 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 29/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +VS+ S + S ++ + + +++ + L Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q + Sbjct: 65 SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+ D I P IKP GSS G+ +K + I L + Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPALEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D ++IE ++DGIEL G V + + T + Sbjct: 185 AF--AESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEVVSKNEFFDYNAKYNGEVTEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 243 TPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ AG +E++ ++ED+ Sbjct: 302 PQQVRAAGIDIKEVMTDIIEDS 323 >gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 G+LASA+ MDK K + + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQAAGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS GI + + + + ++ ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGAAAPR 256 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++P +++ + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665] Length = 379 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG SSE +S + A + + V + V RS L Sbjct: 19 LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 D+ F +LHG +GEDG +Q + E L +PY Sbjct: 79 EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138 Query: 80 THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 G+LASA+ MDK K + + ++ P +K Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQATGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS GI + + + + ++ ++++E + G E+ C V+ Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGAAAPR 256 Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++P +++ + PA++P + + ++ LA A +A+ Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DF F P + EIN PG TP+S++P M G S+ +L+ +++ A Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371 >gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 309 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+ER+VSL++G+ L ++V I ++ V L L D + L Sbjct: 7 VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115 HG FGEDG +QAILE L I Y G+++S++ MDK +K++V++ GV V + V R Sbjct: 67 HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126 Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++KP GGSS+G+ ++ ++ + L + + L+E+ + G Sbjct: 127 ADFKTISEKLGKRIIVKPNSGGSSIGVSFVESEEQLQEALKLVFTM--DKEALVEEVLSG 184 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E++ V+ +I D++ Y+ KYS + + + +I +E+ + A+ + Sbjct: 185 TEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFAYDS 243 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + A+ C G SR DF+ + K +++E+N PGMT S+ P+ A GYS+ E L ++E Sbjct: 244 YYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDLLIE 301 Query: 295 DA 296 + Sbjct: 302 AS 303 >gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112] Length = 378 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P + + + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + +++ + + + + AV Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL 2338] Length = 315 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 16/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GE+G VQ++L++ IPY + A + DK +K ++ G+ +++ T Sbjct: 66 GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V++ +P + + ++GD +L+E+ Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAM--VGALSYGDTVLVEK 183 Query: 171 YVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 Y++G E+ + Y Y +Y++ +T+ PA++ + Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIEATNGVYDYTARYTAGLTTYRTPAELSPETAAAA 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S + Sbjct: 244 GDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGD 302 Query: 288 LLLWMVEDA 296 + +VE A Sbjct: 303 VFATLVERA 311 >gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150] Length = 348 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+L+MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ P +KP GSS+GI + Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA +P ++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFL-AEDGTIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYTDLIKELV 333 >gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris MG1363] gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 349 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + + + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203 + L ++ + ++++IEQ VD E+ C V+G+ S V FY Y Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122] Length = 317 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 169/307 (55%), Gaps = 14/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59 +AVL GG S ERE+SL SG ACA AL + GF V ID D L D+AF LH Sbjct: 12 VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 G GEDG VQ LE + +PYT SGILASAL+++K R+K+ G+ V PS+ V R Sbjct: 72 GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + P V+KP GSSLG+ +++ + + + S + +IE ++ Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALSV--DVEAMIEGFI 189 Query: 173 DGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G ELT GVMG+ V +I + +FY++ KY+ S H+ PA + ++ + VQ Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA AH +GCRGISR+D + D + + LE N PGMT S+ P+ A AG F + Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAE-NRCWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308 Query: 290 LWMVEDA 296 ++E A Sbjct: 309 ERLIELA 315 >gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307] Length = 345 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 93/336 (27%), Positives = 143/336 (42%), Gaps = 40/336 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + ++ GG S E +VS+ S A L ++V + +DR Sbjct: 9 VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68 Query: 46 ---LAHLK--------PD------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 LA PD + + VLHG GEDG +Q + L++ P+ SG+L SA Sbjct: 69 GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128 Query: 89 LSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLKGGSSLG 140 + MDK+ K S+ G+P P ++ + + + P IKP GSS+G Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 I + L ++S + + V +E V +D+Y Sbjct: 189 ISKATNRSELQAGLDLAASHDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSFDADWY 248 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 YE KYSS S+ +PA +P I Q LA A QA+G G+SR DF ++ S + Sbjct: 249 DYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASGNLLIN 308 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T S++P + +G EL+ ++E A Sbjct: 309 EINTLPGFTSQSMYPMLWKASGVPLEELVHQLLELA 344 >gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 333 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S G+ V + I P +KP GSS G+ +K + L Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 + D ++IE +++G E++ G V A + + Sbjct: 188 RVAFM--ESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEVVTTNEFFDYDAKYNGQVQ 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMT 269 + PA+I + K+V + + C GI R D++ K+ LEIN PGMT Sbjct: 246 EITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTPGMT 305 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 HTSFIPQQVHAAGLDIKDVLTDIVEN 331 >gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23] Length = 378 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 7 IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D F V+HGN GEDG +Q + +LL PY S Sbjct: 67 QVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASA+S DK +K+++S G+ P + + + + +KP K GS Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + +++ + + + + AV Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + LP K+P + E+ +A A++A+G +G++R DFL D Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ +++ Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023] Length = 370 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 144/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAKPIYITNDGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTVRLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 353 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 13 LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 73 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + +S P KP GSS+GI Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 192 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + L + + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 193 QEELRVSLELAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 250 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A A +A+G G+SR DF + +VF E+N Sbjct: 251 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348 >gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 317 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 15/306 (4%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL A +V+ DVD + LA +PD+ + +LHG Sbjct: 9 VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------ 116 GEDG ++ +L+LL++PY +G AS ++ K +K VV+ G+ + + + Sbjct: 69 GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128 Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP +GGS+LG+ +++ +P + S + +G+ LIE+ V Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAM--VSCFAYGEVALIERAV 186 Query: 173 DGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 DG+EL V+ T + Y Y+ +Y+ + + PA++P + V Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVTEGPYDYDARYNPGRTEYFSPARLPSSHAEAVAAT 246 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+A+G R ISR+D + + +LE+NV PGMT S+ P+ A G+S L Sbjct: 247 AIAAHEALGLRHISRTDLIL-QADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTLYR 305 Query: 291 WMVEDA 296 +V+ A Sbjct: 306 SVVDHA 311 >gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 349 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 68 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + ++ + P +KP GSS+GI + Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203 + L ++ + ++++IEQ VD E+ C V+G+ S V FY Y Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 304 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris SK11] gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 367 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 42/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ + F V + + + D Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L + Y IL+++ +MD Sbjct: 86 NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K V + GVP P + ++ + P +KP GSS+GI + Sbjct: 146 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 205 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203 + L ++ + ++++IEQ VD E+ C V+G+ S V FY Y Sbjct: 206 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 263 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ D+ +++Q A A++A+ G+SR DF V+ E+N Sbjct: 264 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 322 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V+ A Sbjct: 323 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 355 >gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074] Length = 390 Score = 155 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 98/362 (27%), Positives = 154/362 (42%), Gaps = 69/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S+ +G A +++ + + V I + G VL +P Sbjct: 24 VAVVFGGRSSEHGISVVTGGAVLGSIDRSRYDVLPIGITTEGGWVLTADEPARMAITERT 83 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D+ F VLHG +GEDG Q Sbjct: 84 VPDVDALAEPGEGTVVLPVAPGNREVLYSEPGSVPKALGDVDVVFPVLHGPYGEDGTFQG 143 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118 +LEL IPY SG+LASA+ DK K+V +S G+PV P +++ Sbjct: 144 LLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYLVIRPREWDADEAAARARVI 203 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D P +KP +GGSS+GI + + + L ++ H ++L+E + G E+ Sbjct: 204 DFAGEHGWPLFVKPARGGSSVGITKVDGPEGLDAALAEAR--RHDPKVLVESLLRGREIE 261 Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 CGV D +P + + ++ ++PA + + EVQRLA A Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKYIDSAPGLVPAPLTEEQTAEVQRLAVEA 321 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A C G+ R+DF EIN PG TP+S++P M +G + L+ +V+ Sbjct: 322 FEAASCEGLVRADFFLTE-DGGFVINEINTMPGFTPISMYPRMWQESGVDYPALVDQLVQ 380 Query: 295 DA 296 A Sbjct: 381 AA 382 >gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYLMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG 18311] gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 348 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP + ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA++P+++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM 20306] Length = 358 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AV+ GG S+E VS + A S L+ +++ I + + + Sbjct: 7 VAVIYGGKSTEHSVSCVTAGAIMSHLDPERYEIIPIAITKEGTWTIGVTEGLEIKDGKLP 66 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 H D+ F LHG GEDG VQ + E+ IPY Sbjct: 67 EVEEADELTVSLNPRGDGQIHNVTRGTLHADIDVVFPALHGVNGEDGTVQGVFEMAGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136 +G+++SA+ MDK ++++ + G+PV ++ T + + P +KP +GG Sbjct: 127 VGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTDAEKDHLGLPVFVKPARGG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + +P + + D++++E + G E+ GV+ + ++ Sbjct: 187 SSIGVSKVNTWDELPA--AIAEAAAFDDKVIVEAELVGAEVEVGVLEYPTGELVASVPAK 244 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 FY ++ KY T +PA K +Q LA QA+ C G+SR DF Sbjct: 245 LNGTEDSDEGFYGFDTKYLDNTVTATIPAPFDEATTKALQDLAVETFQALNCEGLSRVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 EIN PG TP+S++P++ +G S+ ELL ++ A Sbjct: 305 FVTEQG--PMINEINTLPGFTPISMYPQVFLASGVSYPELLDTLIATALAK 353 >gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836] Length = 342 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 144/340 (42%), Gaps = 46/340 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG+S E +SL S + A +L+ ++ + + R +L Sbjct: 3 IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D+ VLHG GEDG +Q +LEL IPY I Sbjct: 63 PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V S G+ V + ++ P +KP + GSS G+ + Sbjct: 123 SSALCMDKSLAYVVARSAGIATPNFWTVAAKELPDA-DLTYPVFVKPARSGSSFGVSKVT 181 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + +P + + + ++LIEQ V G E+ C V+G+ V + + + Sbjct: 182 QADDLPSAV--EVASQYDSKVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHGFFRI 239 Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + NST ++PA IP V+ A ++A+GC G++R D V Sbjct: 240 HQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVDLFLTE-DGAVV 298 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PG+T S +P M A AG S E++ +V A Sbjct: 299 LNEVNTLPGLTSYSRYPRMMAAAGLSMGEVIDRVVSLALT 338 >gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9] gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9] gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus thermophilus ND03] Length = 348 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA++P+++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211] gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211] Length = 348 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+ER+VS+ S ++ A++ F V + ++ + Sbjct: 6 IILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY IL+S+++ Sbjct: 66 MTNDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V++S G+P P + V + + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L + + ++LIEQ V+ E+ G++G+ + V FY Y Sbjct: 186 ENQDELRSALKLAF--KYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAK+ D+ +++ A A AIG G+SR DF + ++ E+ Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTDK-GEILLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336 >gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme DSM 15981] Length = 353 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 53/343 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG SSE VS S ++ +++ I + + Sbjct: 6 VVVLFGGQSSEHVVSCMSAANVIDRIDQEKYELLLIGITEEGRWIRTECVEDIRSGSWRD 65 Query: 46 -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + D+ F VLHG +GEDG VQ +LEL +IPY Sbjct: 66 GTVSAVISPDATEKCVILMDGESAERVPVDVVFPVLHGLYGEDGTVQGLLELAKIPYVGC 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134 G+LASA+SMDK+ +K +V + GV V R + + S P IKP Sbjct: 126 GVLASAVSMDKLFTKIIVDNLGVRQAEYEPVTREQLAHMEAVTARIEGHFSYPVFIKPSN 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190 GSS G+ + + + LL+++ H ++L+E+ + G E+ C V Sbjct: 186 AGSSRGVSKAENREELEAGLLEAA--RHDRKILVEEAIVGREVECAVFGGGAEAVVASGV 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + ++FY +E KY + S V ++P D + +++ A QA+ G++R DF Sbjct: 244 GEILAAAEFYDFEAKYYNEESRTVTDPELPGDAAERIRQTAVSVFQAVDGYGLARVDFFV 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +V + EIN PG T +S++P + G S EL+ ++ Sbjct: 304 TG-DGEVVFNEINTLPGFTAISMYPMLWEARGVSKEELVEKLI 345 >gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis substr. CH1] gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 348 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + +S P KP GSS+GI Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L + + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 188 QEELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A +A +AIG G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300 PG T S++P + G ++ +L+ +V E+A R Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343 >gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805] Length = 353 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45 + V+ GG S E VS+ S AL F+V + +DR Sbjct: 8 VGVVFGGESGEHAVSIQSALTVIKALIAPDNQDRFEVIPVYIDREGRWWGPTVAQRVLDQ 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 NHAINSEDLPQPLPAPGLRQWPVDPDTVDIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPS-----------ILVNRFTMDSQHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+ P + + + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYLGLNAIDLEEPERLEQLLTRLEKELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L Q++ + + +E V Sbjct: 188 ANLGSSVGITKARTRDELLDGLHQAAVLDTRLLVEQGVKARELECAVLGRRHLRASVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y YE KY+ S ++PA +P + +++Q +A A QA+ G +R D +D Sbjct: 248 IRFDADWYDYETKYTEGRSQTLIPAPLPASVSQQIQAMAIRACQAVHAYGQARVDVFYDE 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S +++ EIN PG T S++P + G +L+ +V+ A Sbjct: 308 TSGQIWLNEINTLPGFTSQSMYPTLWEATGIPLPQLVAQLVDTA 351 >gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596] Length = 370 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 143/349 (40%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI Q + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVIAREIEMGVLGNDTPICSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I +++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVDLA 354 >gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563] Length = 322 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 16/304 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55 +AVL GG + EREVSL SGK AL E+ IDV + L + + Sbjct: 20 IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---L 112 N+LHG GEDG +Q +LE L I YT IL SA+ M+K+ +K++ S V + Sbjct: 80 NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 V S ++ P +IKP+ GSS+G+ +IK + + + + +E Y+ Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEFDNTIKKIEDI---NNYFLEPYI 196 Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+T G+ D + K++ Y Y+ KY+ + +PAKI DI K+V Sbjct: 197 KGKEITVGLVKEEDDIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVIE 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ +GC G+SR D + + +V+ +E+N Q GMT S P MA G F +L Sbjct: 257 TCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADLA 314 Query: 290 LWMV 293 L+++ Sbjct: 315 LYIL 318 >gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] Length = 315 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP +GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G EL G++ + P Y Y Y+ + PA I + Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +A + + + GISR D + D S + +LE PGMT S+ P AG E Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301 Query: 288 LLLWMVED 295 + +V+D Sbjct: 302 VCSRLVDD 309 >gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 348 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + +L GG S+ER+VS+ S ++ A+ F V + ++ + Sbjct: 6 IILLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKL 65 Query: 47 ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +KP + F VLHG GEDG +Q LE+L++PY IL+S+++ Sbjct: 66 MTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V++S G+P P + V + + ++ P KP GSS+GI Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + L + + ++LIEQ V+ E+ G++ + + + V FY Y Sbjct: 186 ENQDELRSALELAF--KYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEVVKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 E KY T +PAK+ D+ +++ A A AIG G++R DF + ++F E+ Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTDK-GEIFLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336 >gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000] Length = 323 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 12/301 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55 +AVL GGIS EREVSL SGK AL ++ IDV + +L + + Sbjct: 20 IAVLHGGISDEREVSLRSGKNVFEALTSYKELKDSTILIDVKDHYELVEILKKENVEYCY 79 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 N+LHG FGEDG +Q +L+ L I YT L S+L M+K+ +K++ S + L+ Sbjct: 80 NILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLLED 139 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ + P ++KP+ GSS+G+ +IK + + + +E Y+ G Sbjct: 140 AVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEFDNIVKDIKDIH---NYFLEPYIKGK 196 Query: 176 ELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 E+T G+ D + PK++ Y Y+ KY+ + +PAK+ DI K++ Sbjct: 197 EVTVGLVRDNDDIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIENCK 256 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ +GC G+ R D + + +E+N Q GMT S P MA F +++L++ Sbjct: 257 KAYDVLGCEGLCRIDAIIS-DDGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVVLYI 315 Query: 293 V 293 + Sbjct: 316 L 316 >gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279] Length = 319 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 15/307 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58 +AVL GG S ERE+SL+SGK AL +AG+ V ID + + D AF L Sbjct: 11 IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVELIDPAAPTFLERMTGDGWDAAFIAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +LE L IPYT S LAS ++MDK SK + G+PV PS+ R M Sbjct: 71 HGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRADM 130 Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 I +KP+ GSS GI + K + + + HG+++++E+ V G Sbjct: 131 LPLEEIVAVVGEQSFVKPVVNGSSYGISLAKDPSELANAIEVAF--EHGEKVMVEKRVFG 188 Query: 175 IELTCGVMGDASLDVTEIA-----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 E + +GD +S+FY E+KY+ H +PA +P D+Y +VQ Sbjct: 189 TECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQE 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH+A+G GISR+D + LE N PGMTP S+ P+ A +AG F EL Sbjct: 249 IACRAHEALGLYGISRTDVIVTEDG--PVILETNNIPGMTPESLVPDEARHAGIPFSELC 306 Query: 290 LWMVEDA 296 +V+ A Sbjct: 307 AELVDLA 313 >gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 348 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA +P ++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333 >gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 13/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 H L+SPP V+KP++ GSSLG+ ++ ++ + L + H DQ+++EQ+V G Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPALETAF--AHDDQVMVEQFVAGR 186 Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T + +P + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 AH+A+ +G SR+D + ++ LE N PGMTP S+FP+ AA G F Sbjct: 247 CRAHRALRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDF 298 >gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + S G+ V S+ + I P +KP GSS G+ +K + L Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212 + + +++E Y+DG E+T G+ V ++F+ Y+ K + Sbjct: 188 VAFMESSD--VMVEAYLDGTEITQGIYKTRERSVPFPITEVVTTNEFFDYDAK-YNGQVD 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA+I + + V + + + GI R D++ D +V LE+N PGMT Sbjct: 245 EITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L ++E+ Sbjct: 305 TTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 332 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +DR+ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127 Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + S G+ V S+ + I P +KP GSS G+ +K + L Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212 + + +++E Y+DG E+T G+ V ++F+ Y+ K + Sbjct: 188 VAFMESSD--VMVEAYLDGTEITQGIYKTRERSVPFPITEVVTTNEFFDYDAK-YNGQVD 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA+I + + V + + + GI R D++ D +V LE+N PGMT Sbjct: 245 EITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L ++E+ Sbjct: 305 TTSFIPQQVRAAGLDIKDVLTEIIEN 330 >gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 +A+LMGG SSE EVSL S L+ ++ I + + Sbjct: 4 IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63 Query: 43 GLVLAHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + K AFN +HG GEDG +QA + IP T + ASAL+ +K V+ Sbjct: 64 SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +NR S I P +K + GSS+G+ ++ I + + Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDIDEAIEK 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 + +++IE+++ G E++ GV+ + + S + Sbjct: 184 AFEV--DSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEIVSENDFFDHEAKYEGKSQEI 241 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ + K+V+ +A + + +G SRS+++ ++ + LE+N PG+T SI Sbjct: 242 TPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKASIL 299 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ A AG + L +E+A Sbjct: 300 PQQAKAAGITLANLFDNAIEEA 321 >gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 348 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 ++ GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE+L +PY IL+S+++MD Sbjct: 68 NATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ S G+P P + + + + ++ P KP GSS+GI + Sbjct: 128 KITTKRILESAGIPQVPYVAVIEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + L + + ++LIEQ V+ E+ G++G+ + T V FY YE Sbjct: 188 QEELRAALDLAF--KYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +P KI + ++ A A +A+G +G++R DF + +F E+N Sbjct: 246 KYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTEE-GDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G + +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWENMGLPYSDLIEKLVNLA 336 >gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 361 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 51/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPD--- 52 + VL GG+S E ++S+ S +AL +A + V +++ V L D Sbjct: 3 IIVLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLL 62 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F VLHG GEDG +Q LE+L +PY Sbjct: 63 QLKQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPY 122 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+ ASA MDK+ SKQ+ G+P P + ++ + + P+ + Sbjct: 123 VGAGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFV 182 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+G+ ++ Q + + + ++ + + E+ D V Sbjct: 183 KPANMGSSVGVSRVENSQELIKAVDVALEFDRRIVVEQGISANECEVAVLGNDDIHASVV 242 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V SDFY Y+ KY + +PA +P + +++ A A++A+ G++R+DF Sbjct: 243 GRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADFFV 302 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ E+N PG T S++P + G ++R+L+ +++ A Sbjct: 303 TA-NYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLIDELIQLA 347 >gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] Length = 389 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 146/358 (40%), Gaps = 65/358 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + VL GG S E +S ++ A++ + V + + VLA Sbjct: 27 VMVLFGGRSGEHAISCATAGGVLRAIDRDRYDVVAVGITSDGRWVLADDDADHWAIRDGR 86 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG FGEDG +Q +LEL Sbjct: 87 LPRVEDTATHVLLPQGTTDREVQVLRDGVLGAPLGAVDVVFPLLHGPFGEDGTLQGMLEL 146 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PP 127 ++ Y SG+LASA+ MDK K V++ G+ V P ++ + P Sbjct: 147 ADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFRVLPPGREPDAATLDAVVADLGLP 206 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP + GSSLG + + D L +++ H ++++E + G E+ CGV+G S Sbjct: 207 LFVKPARAGSSLG--ISRVDDKADLADAIAAARVHDPKVIVEAALFGREVECGVLGGRSG 264 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAI 238 ++P + PA +P D+ VQ +A A +A+ Sbjct: 265 APPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSCPADLPDDVVARVQDVAVRAFEAV 324 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G++R D P +V EIN PG TP S++P M A +G + L+ +V A Sbjct: 325 GCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWAVSGLDYASLVDELVGLA 381 >gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii M21/2] Length = 364 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG+SSE EVS S ++ + ++V + + + + Sbjct: 9 VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL I Sbjct: 69 ELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129 Y G+LAS++ MDK + + + GVP + NR+ + + P Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + + +++ E +VDG E+ C V+G Sbjct: 189 VKPANAGSSVGISKVSNQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG T +S++P++ + G +L+ ++ A Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA] Length = 348 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S+EREVS+ S ++ A+ F V + + + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67 Query: 47 -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 +KP + F VLHG GEDG +Q LE+L++PY IL+S+L+MD Sbjct: 68 NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + + + + + +S P KP GSS+GI Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + + + L + + ++L+EQ V E+ G++G+A + + V FY Y+ Sbjct: 188 QEELRVSLELAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++P + +++ A A +AIG G+SR DF + +VF E+N Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVRLA 336 >gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS] gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS] Length = 364 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 95/340 (27%), Positives = 159/340 (46%), Gaps = 57/340 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+ GG S+E E+S+ S ++ A+ ++ +++S + +DR Sbjct: 6 VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65 Query: 45 VLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 +L P D+AF LHG++GEDG +Q L+ Sbjct: 66 LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127 IPYT G+ ASAL+MDK+ +K + G+ V + + + L P Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI ++ + + L + + L+E + G E+ V+G++ Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENACGL--DSKALVEAAISGREIEVAVLGNSDP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +E +P SDFYSYE KY + V+PA +P + +EV++ A +A+GC G++R Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 DF + + +V EIN PG T +S++P M A +G F Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343 >gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337] Length = 315 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLRTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + + + + + ++ LIE+ Sbjct: 128 MGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ V Y + +Y+ S + +PA++ + + V+ Sbjct: 186 YVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIETVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G S EL Sbjct: 246 ATAVTVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAEAEG-SLEEL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3] Length = 315 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 105/282 (37%), Positives = 143/282 (50%), Gaps = 6/282 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG S EREVSLSS K +AL D G++ +D D+AFN+ HG Sbjct: 13 AVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWTGLK-GVDIAFNIQHGV 71 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG+ Q +L L + T S +L SAL+MDK+RSKQ+ + G+P LVN T Sbjct: 72 GGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHTDAQA 131 Query: 122 HLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 L +KP GSSLG+ + +S S+ GDQ+L E+++DG E T Sbjct: 132 LLADWGAAFVKPCSEGSSLGMTRVDSPESFLQA--CESAAVFGDQILAERFIDGPEYTVA 189 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L +FY YE KY + + + +P + D + LA A A+GC Sbjct: 190 ILGDRALPPIH-IESAREFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAALGC 248 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 R D + D S K LE+N PGMT S+ P A AG Sbjct: 249 SVWGRVDLMRD-SSGKFQLLEVNTVPGMTDHSLVPMAATAAG 289 >gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13] gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 287 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 157/296 (53%), Gaps = 15/296 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +AV MGG SSE+E+SL SG+A +L+ + + +D ++ DLA+ VLH Sbjct: 3 IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GE+G +QA+L++L YT SG+LASA++MDK ++K + I + Sbjct: 63 GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKAYRT 116 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + + P +IKP+ GSS G+ + + + + + +IE Y+ G ELT Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKIV------RPIIEDYIVGEELTV 170 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 GV+ +L V +I Y Y+ KY+ S H PAKI YKE ++A H G Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +G SRSDF+ ++++LE+N PGMT S+ P++A GY+F +++ VE Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284 >gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 10/285 (3%) Query: 15 SLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 SL SG+A AL +G + D DRSV ++ D AF VLHG GEDG +Q +LE Sbjct: 2 SLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLHGRGGEDGQIQGVLE 58 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIK 131 L IPYT +G+ SA+ MDK+++KQ+ +P P I + P +IK Sbjct: 59 WLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLDSVIAELGLPVIIK 118 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P+ GSS+G+ ++K + + +++ H ++ E+++ G E T + L V Sbjct: 119 PVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVIR 176 Query: 192 IAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + P FY YE KY + + +P + K++Q L A QA+G G R D + Sbjct: 177 LQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAMQ 236 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 D + LE+N PGMT S+ P+ A GYSF EL + ++E Sbjct: 237 DEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 280 >gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 324 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 31/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +SL S + +++ + + + R+ V Sbjct: 4 VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D A+ ++HG GEDGL+Q L++L IPY+ G+L+++++ +K + Sbjct: 64 SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123 Query: 101 SSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 GV SI + P ++KP GGSS G+ + I L + Sbjct: 124 RGFGVETAKSILLKQREQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQLAIR 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212 + N G+ +LIE ++ G E+TCG + + K+DF+ +E KY+ Sbjct: 184 NAF--NEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEIISKNDFFDFEAKYNPGMVE 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + E+Q L + +G +GI R D++ P ++ LE+N PGMT S Sbjct: 242 EITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISPKK-EIKMLEVNTIPGMTATS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG + +E+L ++E Sbjct: 301 FIPQQIRAAGLNLKEILTEIIES 323 >gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon 107 str. F0167] Length = 349 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 48/346 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 A++ GG SSE E+S+ S + ++++ +++ I + ++ + Sbjct: 5 AIVFGGQSSEHEISVISATNISKQVDESKYELILIGITKTGKWLKVDSIASMEDGSWINS 64 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG FGEDG +Q +LEL IPY G Sbjct: 65 KINAYILPDAIKKCIIVEIDGEYKEVHVDVVFPVLHGLFGEDGTIQGLLELSGIPYVGCG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLK 134 +LASA+ MDK+ +K VV G+ V + + P +KP Sbjct: 125 VLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVKRIEDRFDYPVFVKPSN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G+ + + +L++ + + + +E + + Sbjct: 185 AGSSKGVSKASNREELEKGILEALNHDRKVLVEETIVGHEVECGVLGRPGEVMASGVGEI 244 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + + L+S +L +++P + +++ A A+ G+SR DF Sbjct: 245 KSAATFYDYDAKYKLDSLTLLDSQLPNGVREKLPECAKKIFTALDGFGLSRVDFF-AKED 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ + EIN PG T +S++P + AG +EL+ ++E A R Sbjct: 304 GEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIELAFERR 349 >gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7] Length = 361 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 57/350 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLVL------------ 46 +AV+ GG S+E +VS+ S ++ + ++V I + + V Sbjct: 6 VAVIFGGRSNEHDVSVVSAAHVIRSISENPDRYEVICIGITKKGHWVRFMGSAEDIANGS 65 Query: 47 ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 ++K D F VLHG GEDG +Q I ++ E Sbjct: 66 WAENPDNVACIFSPDPVHRGFIQLEDDGSYTNIKVDAVFPVLHGKNGEDGTIQGIFQMAE 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPY 128 IP+ +++SA MDK + ++ + GV I + + + P Sbjct: 126 IPFVGCDLISSACCMDKDVTHTILEAHGVRTAKWISMIYRDISKLDEKCRLMEKELGYPM 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI + + + + H ++++EQ ++GIEL C VMG+ Sbjct: 186 YVKPANCGSSVGITKAHDFEELKAGIKLAF--THDHKVVVEQGINGIELECAVMGNDEPF 243 Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 ++FY Y+ KY++ +S +PA++P ++ +E++ A A +A+GC G++R Sbjct: 244 ASTVGEIAAANEFYDYDAKYNNSDSKTYIPARVPDEVIEEIRETAVRAFKAMGCEGLARC 303 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V EIN PG T +S++P++ + G S+ E +++ A Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTQISMYPKLMEHEGISYAEQEDRLIKLA 352 >gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126] Length = 348 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ + F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K ++ GVP + ++ P +KP GSS+GI + Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA +P+++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ L+ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSNLIKELV 333 >gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42] Length = 358 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 145/341 (42%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E +VS+ S +ALE + + V +L+ Sbjct: 10 IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG GEDG VQ ++ +P G Sbjct: 70 TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ S + + P IKP + GSS+ Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ + Q L Q+ H LL E++V G E+ V+ + Sbjct: 190 GVAKVHASQEFAAALEQAF--RHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA +P +I ++ +A A +A+GC G++R DF Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T +S++ + A +G S+ E++ +V Sbjct: 307 SDMRFVINELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347 >gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1] Length = 314 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 157/294 (53%), Gaps = 13/294 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59 +A+L GG S+EREVSLS AL + +++ + D + + A D+AF +LH Sbjct: 9 VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG +Q L+LL IPY SG+L SAL+MDK +K++ G+ V + + Sbjct: 69 GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRVPAWEMARPADIA 128 Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 L+SPP V+KP++ GSSLG+ ++ ++ + L + H DQ+++EQ+V G Sbjct: 129 EPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPALETAF--AHDDQVMVEQFVAGR 186 Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 E+T + +P + F+ Y+ KY S V PA++P + +VQ A Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 AH+ + +G SR+D + ++ LE N PGMTP S+FP+ AA G F Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDF 298 >gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 364 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG+SSE EVS S ++ + ++V + + + + Sbjct: 9 VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL I Sbjct: 69 ELPGNMACVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129 Y G+LAS++ MDK + + + GVP + NR+ + + P Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + + +++ E +VDG E+ C V+G Sbjct: 189 VKPANAGSSVGISKVSSQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG T +S++P++ + G +L+ ++ A Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 332 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 33/325 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE EVSL S + S + + V +++ + V Sbjct: 7 IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+GL+Q +++++PY+ SG+L A++ +K + Sbjct: 67 SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126 Query: 101 SSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 G V S++V + + + P IKP GSS G+ +K IP L Sbjct: 127 RGFGYNVAKSMVVYKDEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIPAAL 186 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212 ++N ++++IE ++ G E++ G V+ A + + Sbjct: 187 --ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEVVTENEFFDYNAKYNGQVQ 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ D + V + + C GI R D++ S + LEIN PGMT Sbjct: 245 EITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294 S P+ AG + ++L +VE Sbjct: 305 ATSFIPQQVRAAGLNMTDVLTNIVE 329 >gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402] Length = 356 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 42/337 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG S+E +VSL + ++ +A++ + + I + + Sbjct: 6 ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65 Query: 46 -LAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L+H++ D F +LHG GEDG +Q + E+L+IPY +G+LA++ Sbjct: 66 RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSL 139 SMDK+ KQ+ ++ G+P P + + + + ++ P +KP GSS+ Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 GI +++ + ++ ++ + +E+ + V DF Sbjct: 186 GISKCTDSETLIHGIEEALQFDRKLVIEQGVNAREVEVAVLGNDTPETTLPGEVVKDVDF 245 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y Y+ KY +PA I +I ++ +A A +A C G+ R+DF K++ Sbjct: 246 YDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-DDKIYI 304 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E N PG T S++P + G S+ EL+ ++ A Sbjct: 305 NETNAMPGFTKFSMYPLLWENMGKSYSELITDLINLA 341 >gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99] gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99] Length = 373 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E +S S + L+ F+V I + VL PD Sbjct: 13 VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72 Query: 53 ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73 + F VLHG +GEDG +Q +LE Sbjct: 73 LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYV 129 L +PY +G+LASA MDK +K++ S+ G+P+ P ++ + P Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186 +KP +GGSS+G+ + +P + + H ++++E ++G EL CGV+ Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAIAAAR--RHDPKVIVEAAINGRELECGVLEFPDGRL 250 Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + V + + FY +E KY + +PAK+ D+ V++LA A +AI Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G++R DF E+N PG T +S++P M +G + LL MVE A Sbjct: 311 CQGLARVDFFLT--DDGPVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVETA 365 >gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 315 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ A AL G +VS DVD + L L+PDL + +LHG Sbjct: 9 VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V+ +++LL + +G AS ++ K +K VV+ G+ + + + Sbjct: 69 ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS+LG+ ++ +P + + + D LIE+ Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAM--VDCFAYSDTALIER 186 Query: 171 YVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ V+ D + + + + Y Y+ +Y+ + PA++ + + V Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AH A+G +SR+D + D ++LE+NV PGMT S+FP+ A AG++ +L Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDAE-GTPWFLEVNVAPGMTETSLFPQAAEGAGHNLGDL 305 Query: 289 LLWMV 293 +V Sbjct: 306 YRSLV 310 >gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2] gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2] Length = 366 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 347 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 +L GG S+ER+VS+ S ++ A+ F V + +S + Sbjct: 7 VLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66 Query: 47 --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K V+ S GVP+ + + + ++ P +KP GSS+GI Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKAD 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + ++ + IE+ D + V FY Y+ K Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA I I +E++ A A +AIG G+SR DF V+ E+N Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +VE A Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336 >gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262] gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262] Length = 370 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J] Length = 348 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + +L GG S+EREVS+ S ++ A+ F V + Sbjct: 6 IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65 Query: 39 ------DRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D S+ + + + D + F +LHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+P + + +S P +KP GSS+GI Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVGISKA 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSY 202 + + + + + + ++LIEQ V E+ G + + + FY Y Sbjct: 186 ESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEVIKDVAFYDY 243 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY + +PA I I +++ A A +AIG G+SR DF ++ E+ Sbjct: 244 QAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDFFL-AEDGNLYLNEL 302 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V A Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLSYSDLIEELVSLA 336 >gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 355 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 56/346 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 V+ GG SSE VS S + ++ + V + + +L Sbjct: 8 VIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRDGT 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 +K D AF VLHG +GEDG +Q + EL ++PY G+ Sbjct: 68 VQAVLSPDATEKSVIVIDGAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKPL 133 LASA+SMDK +K + GV V + + + + P IKP Sbjct: 128 LASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPS 187 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-- 191 GSS G+ + + + L +++ H ++L+E+ + G E+ C V G+ V Sbjct: 188 NAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASG 245 Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + FY +E KY + S V+ ++P D + V+R A +A+ G++R DF Sbjct: 246 VGEVLAAAQFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 V + EIN PG T +S++P + AG S EL+ ++E Sbjct: 306 VT-KDGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLIEH 350 >gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836] Length = 326 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 30/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF------------------KVSQIDVDRSV 42 +A++ GG SSE VS S S L+ + + +D + Sbjct: 5 IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64 Query: 43 GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L K D AF ++HG GEDG +QA ++L+IPY+ G++ S+L+M+K + Sbjct: 65 FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ V S+ +N+ + + I+ P +KP GGSS +K + + Sbjct: 125 RNFGIRVADSLYLNKDSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKSVDQLQKAIDV 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++IE ++ G E+TCG + +V + + Sbjct: 185 AFGETPD--VIIESFIKGTEVTCGCYKIKNKEVVFPLTEVVTSNDFFDYDAKYEGQVEEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I +I +E+QRL + +G +GI R DF+ K + LE+N PGMT S Sbjct: 243 TPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFII--SDNKPYLLEVNTVPGMTQTSFI 300 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A AG + E+L ++E+ Sbjct: 301 PQQVAAAGLNITEVLTEIIEN 321 >gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R] gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R] Length = 360 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS S A + L+ + V + + V+ P Sbjct: 11 VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG VQ + L +IP Sbjct: 71 MPEVEHREEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKG 135 G+LASA MDK +K+++++ G+P+ + T ++L+ P +KP +G Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPIGREVILRDRTELTEAEKNLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + H +++++E + G E+ CGV+ + Sbjct: 191 GSSIGISRVTAWEDFNKAVGLAR--AHDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248 Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + + +Q LA + QA+ C G++R D Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M +G ++ ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355 >gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1] Length = 311 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 148/300 (49%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV GG SSEREVSL SG+ACA+ALE + F+V + +D + + F+ LHG Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADALPAGLDPQRHVVFSTLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116 FGEDG +Q +L+ + Y ++SAL+MDK +K+ ++ G+ V P + Sbjct: 65 TFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPR 124 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 V+KP GSS+G+ ++ + + L + +IE+ + G E Sbjct: 125 PEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQ----NGRWIIERRIFGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 L GV+ ++ PKS Y Y KY+ + ++ PA + + +++Q A A Sbjct: 181 LAVGVLNGRAM-GVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFA 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A GCR +R DF+ +++ LEIN PGM S+ P A G F L+ MV A Sbjct: 240 ACGCRDYARVDFIL-GDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPA 298 >gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 146/341 (42%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +V++ S + SA+ ++V I +D++ V L P+ Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P IKP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 188 MGSSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIV 247 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + FY Y KY +PA IP ++ ++ + A A+ +G G+SR DF Sbjct: 248 KEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLT-NK 306 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 347 >gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111] Length = 348 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 43/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ F V + VG + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F VLHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 67 TNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +KQV+++ GVP S +S P +KP GSS+GI Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 245 AKYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 348 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ F V + VG + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F VLHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 67 TNQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +KQV+++ GVP S +S P +KP GSS+GI Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 245 AKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R] gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316] gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909] gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R] gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316] gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909] gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Streptococcus agalactiae 18RS21] gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515] gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1] gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B] Length = 348 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG S+EREVS+ S ++ A+ F V + VG + + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F VLHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 67 TNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +KQV+++ GVP S +S P +KP GSS+GI Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + S+ + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAK+ + +++ A A +AIG G+SR DF ++F E+N Sbjct: 245 AKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336 >gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium 2_1_46FAA] Length = 338 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 153/335 (45%), Gaps = 47/335 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S+E EVSL S A + L+ +++ I + R Sbjct: 4 IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63 Query: 46 -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 +K D F VLHG GEDG +Q ++EL +P Sbjct: 64 EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 G L+S+L MDK ++ ++V G+ V ++++ + + P +KP++ GSS G Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAVPKAVVLRKGEK--ADTLVYPVFVKPVRAGSSFG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198 I + +++ + + + H D+++IE+ ++G E+ C V + + Sbjct: 182 ITKVDREEDLEKAVELAF--VHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ ++ KY+ NS +PA+I +I ++++ A ++ + C+G +R D P +++ Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTP-DKRIV 298 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + E+N PG T S +P M F ++L ++ Sbjct: 299 FNEVNTIPGFTSHSRYPNMMKGIDMLFEDVLDNLI 333 >gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC 13032] gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Corynebacterium glutamicum ATCC 13032] gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC 13032] Length = 360 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE VS S A + L+ + V + + V+ P Sbjct: 11 VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG FGEDG VQ + L +IP Sbjct: 71 MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKG 135 G+LASA MDK +K+++++ G+PV + T ++L+ P +KP +G Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + H +++++E + G E+ CGV+ + Sbjct: 191 GSSIGISRVTAWEDFNKAVGLAR--AHDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248 Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY T +PA + + +Q LA + QA+ C G++R D Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F EIN PG TP+S++P+M +G ++ ELL +V+ A Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355 >gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1] gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1] Length = 318 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 30/322 (9%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44 MGG SSE +SL +G + L + ++ + D SV + Sbjct: 1 MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + D FN +HG+ GEDG +Q LELLEIP+T G+ +AL+ +K + G Sbjct: 61 DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120 Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + S +N + I P +K K GSS G+ + + + + + Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFGVSKVHEISDLKNAIAIAL-- 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVLPAK 218 D+++IE ++DG+E++ GV+ + + S + PA+ Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEIVSENDFFDYEAKYLGKSQEITPAR 238 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I ++ +V ++A ++ + G SRS+F+F + + LE+N PGMT SI P+ A Sbjct: 239 ISPELSAKVAKVAKKIYEILKLEGFSRSEFIF--KDDEPYLLEVNTIPGMTEESILPQQA 296 Query: 279 AYAGYSFRELLLWMVEDASCLR 300 AG S L VE A + Sbjct: 297 KEAGISLEALFGNAVELALTKK 318 >gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX] Length = 329 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL +V DV + +L P + F VLHG Sbjct: 22 VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL +PY + A + K +K +V+ G+ V + + + Sbjct: 82 GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ P +KP +GGS+ G + + ++P L S + + D LIEQ V Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAAL--VSCFAYSDTALIEQQV 199 Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ + VP Y Y +Y++ + PA++ ++ + Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEIVPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAAD 259 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+A+G R +SR+D + D + +V++LE+NV PGMT S P AG F + Sbjct: 260 AAVTAHRALGLRDVSRTDLIIDE-TGRVYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVVC 318 Query: 290 LWMVEDA 296 + A Sbjct: 319 RELAHRA 325 >gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str. 'morsitans'] Length = 366 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 55/350 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S+E EVSL S A++ + ++ I VD+ L + Sbjct: 11 VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+AF+VLHG GEDG VQ +L +L I Sbjct: 71 AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 PY +L SA+ MDK +K+V+ GVPV PS+ + P IK Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLRTGDAAPDVDAIIGQLGLPLFIK 190 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P GSS+G V K + ++ + ++L+EQ + G E+ V+G+ S +V+ Sbjct: 191 PASQGSSVG--VSKVTDRAGFAAALALAFRYDAKVLVEQGISGREIETAVLGNDSPEVSV 248 Query: 192 IAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 ++ Y L V+PA +P I ++++A A+ A+GC ++R DF Sbjct: 249 CGEILANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARVDF 308 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 ++ E+N PG T +S++P++ +G + L+ ++ A Sbjct: 309 FLTDQ-GQILLNEVNTLPGFTSISMYPKLWEASGLDYPALVDRLIVLARA 357 >gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 348 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KP------- 51 +L GG S+EREVS+ S ++ A+ F V + ++ KP Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAINYDRFLVKTYFISQAGDFYKTQEWSQKPAETEKLM 66 Query: 52 --------------D------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D + F +LHG GEDG +Q LE+L++PY + IL S+++M Sbjct: 67 TNQTIVAASQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S GVP + + L +S P +KP GSS+GI + Sbjct: 127 DKITTKRVLESAGVPQVAYKVFVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGISKAE 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + + ++LIEQ V+ E+ G++G+ + T V + FY Y+ Sbjct: 187 SESELREAIQLAL--QYDSRILIEQGVNAREIEVGLLGNTDVTSTLPGEVVKEVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY N T +PA++ ++ +++ A A +A+GC G+SR DF ++ E+N Sbjct: 245 AKYIDNNITMAIPAELETELANKMRAYAENAFKALGCCGLSRCDFFLT-RDGSIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYSDLIEKLVALA 336 >gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 346 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 45/335 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG E VS+ S + A L+ ++V I + ++ +L Sbjct: 6 VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ DL F VLHG GEDG +Q +LEL IPY + Sbjct: 66 PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 SAL MDK + V G+ +V + P V+KP + GSS G+ + Sbjct: 126 TSALCMDKSLTYLVAQHAGITTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKVT 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSD 198 ++ + + + + ++LIE+ + G E+ C ++G+ V Sbjct: 186 HEEELQTAIDTAR--QYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFRI 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + S NST +PA I L+ VQ A ++A+G +G++R DF + Sbjct: 244 HQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFL-KEDGTLV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+ PGMT S +P M A AG +L+ MV Sbjct: 303 LNEVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337 >gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp. sepedonicus] Length = 321 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 99/314 (31%), Positives = 155/314 (49%), Gaps = 19/314 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ AL AG S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S A+ L+ DK +K + + G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ +++ ++P + ++ +GD LIEQ + Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAM--VDAYTYGDVALIEQLI 188 Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G E+ GV+ VP S Y YE +Y++ + PA+I + Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEIVPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAST 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A H+A+G +SR D + D + ++LE+NV PG+T S+ P+ A AG +L Sbjct: 249 AAVGIHRALGIGQMSRVDIIIDAA-GEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDLY 307 Query: 290 LWMVE---DASCLR 300 + E DAS +R Sbjct: 308 RRLAEAARDASTIR 321 >gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20] Length = 315 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + + + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 Y+ G EL V+ V Y + +Y+ S + +PA++ + ++V+ Sbjct: 186 YIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G S EL Sbjct: 246 TTAVTVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAKAEG-SLEEL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M] gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M] Length = 366 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 201 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 358 >gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetaseA gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M] gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1] Length = 353 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345 >gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 94_M4241A] gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92] gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054] gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85] gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503] gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17] gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46] gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 1435] Length = 358 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 353 >gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551] gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11] gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A] gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210] gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207] gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506] gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN V2475] gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551] gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C] gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11] gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46] gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A] gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 605] gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17] gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92] gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054] gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM 1503] gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85] gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu002] gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu003] gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu004] gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu005] gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu006] gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu007] gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu008] gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu009] gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CDC1551A] gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148] gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN 4207] Length = 373 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 65/356 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF EIN PG T +S++P M A +G + LL M+E A Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 368 >gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066] gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 348 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S+EREVS+ S ++ A++ F+V + +S + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67 Query: 50 ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 KP + F VLHG GEDG +Q LE L++PY + +L+S+++MD Sbjct: 68 NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+++ GVP + ++ P +KP GSS+GI + Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + ++ + IE+ V FY Y+ KY Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 T +PA++P+++ +++ A A +A+G G++R DF ++ E+N P Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 G T S++P + G S+ +++ +V Sbjct: 307 GFTQWSMYPLLWENMGLSYSDIIKELV 333 >gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878] Length = 345 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 45/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG E +S+ S + A L+ ++ I + +S L Sbjct: 6 IGIIFGGCYEEHPISVKSVREVAKNLDTEKYEPFYIGITKSGAWKLCDGPDEGWENSSRS 65 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D +LHG GEDG +Q ++E+ IPY I + Sbjct: 66 VVLSPDRSVHGLLVLEQGRYETISLDAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SAL MDK + V S G+ +V ++ P +KP + GSS G+ + + Sbjct: 126 SALCMDKSLTYIVARSAGIATPNFWIVTADDDIDPGQLTYPVFVKPARSGSSFGVSKVSR 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ +P + ++ + ++LIE+ V E+ C V+G+ + T + + + + Sbjct: 186 EEELPSAV--KTAREYDSKVLIEEAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIH 243 Query: 207 SSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 N T ++PA IP + VQ A + ++A+GCRG++R D +V Sbjct: 244 QESNPEQGSENSTFIVPADIPDESRARVQETAKVIYRALGCRGLARVDMFL-KEDGQVVL 302 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA-SCLR 300 E+N PGMT S +P M A AG E++ MV A + R Sbjct: 303 NEVNTLPGMTSYSRYPRMMAAAGMPLGEVIDRMVSLALAAHR 344 >gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10] gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10] Length = 339 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 33/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+MGG S E VSL SG+ +L+ + V ++ V + L Sbjct: 17 VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76 Query: 50 ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 K D+ FN++HG GE+G +QA + + YT G SAL+ +K + V Sbjct: 77 SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136 Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P S+ + + + + P +KP + GSSLGI +K + Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE ++DG+E++ GV+ + V +F+ YE K S Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEIVSHKEFFDYEAK-YEGASE 253 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + ++V+ +A A+ ++G G SRS+F+ + + LE+N PG +P S Sbjct: 254 EITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPAS 311 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299 I P+ A G S ++L VE A Sbjct: 312 ILPQQAKIYGISIKDLCGNEVEKALAK 338 >gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus brevis ATCC 367] gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367] gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis] Length = 380 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 + +L GG SSE +VS S A++ + VS + R Sbjct: 9 VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68 Query: 43 ------------------GLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L+ K D+ F ++HGN GEDG +Q + LL+ P+ SG Sbjct: 69 TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 +LASA+S DK +KQV+++ G+ + + Q + IKP GS Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188 Query: 138 SLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 S+GI Q + Q V+ L + L + Sbjct: 189 SVGIHKASNVQEYLDGVADAFRYDYKVLVEQTIDGPQEVEISILGNEQPQASKLGAIRVP 248 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + T +P K+ ++ +E+ ++ + A+G +G++R D+L Sbjct: 249 ESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYLVS-K 307 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + E+N PG T +S++P++ G ++ +L+ ++E A Sbjct: 308 DGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIELA 350 >gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis] Length = 348 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 140/337 (41%), Gaps = 45/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG+S E +S+ S + L+ ++ I + +S Sbjct: 6 IGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWENGDVR 65 Query: 45 --------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 VL K D+ VLHG FGEDG +Q +LE+ IPY + Sbjct: 66 PAVLSPDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLP 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S + +DK + VV G+ +V ++ P +KP + GSS G+ + Sbjct: 126 SSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + +P L ++ + ++LIE+ V G E+ C ++GD + + + Sbjct: 186 SKEELPAALAEAR--QYDAKILIEEAVIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + ++PA IP VQ A + ++A+GC G++R D V Sbjct: 244 HQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCSGLARVDLFL-KEDGSVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 E+N PG+T S +P M AG S +++ +V+ Sbjct: 303 LNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKL 339 >gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501] gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501] Length = 329 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG SSE E+SL SG+ L+ + +I + R ++L Sbjct: 7 IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+ D FN +HG GE+GL+QA EL+ +P T G +A++ +K ++ Sbjct: 67 SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GVP S ++R +Q I P +K + GSS G+ ++++ + + Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVREASGLQAAV-- 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 ++ D++LIE + G E++ GV+ + + S + Sbjct: 185 ENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEIVSENDFFDYQAKYEGKSREI 244 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP D ++V+ LA + + G SRS+F+ + + LE+N PG+T SI Sbjct: 245 TPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEASIL 302 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ AA AG S EL + DA Sbjct: 303 PQQAACAGISLTELFGSAIADA 324 >gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702] Length = 365 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 59/355 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +AVL GG +SE +S S A S L+ ++V + + + V Sbjct: 15 VAVLYGGQNSEHSISCLSAAAVMSHLDPDRYEVVPVGITETGMWVKGTTDTEALSAHGRD 74 Query: 48 -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + + D+ F VLHG GEDG VQ +LEL Sbjct: 75 LPTVKMSRGVHLVPGSFASGRGQLRYGDGSLYAEVDVIFPVLHGRNGEDGTVQGVLELSN 134 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPL 133 +PY +G+LASA MDK +K + + GVPV + T + + +I P +KP Sbjct: 135 VPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEVVLTERRDLTDEEKEMIGLPVFVKPA 194 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 +GGSS+GI + + ++ ++ H ++L+E + G+E+ CGV+ V Sbjct: 195 RGGSSVGISKVSDWADLDAA--EAHAFEHDTKILVEAMLHGVEVECGVLQYPDGTVHASQ 252 Query: 194 VP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 FY ++ KY ++ +PA +P V+R A +A+ C G++R Sbjct: 253 PSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLPEGQADAVRRWAVETFRALDCEGLAR 312 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 DF E N PG TP+S++P+M G ++ ELL ++ A + Sbjct: 313 VDFFVTEDG--PVLNEPNTMPGFTPISMYPKMFEATGVAYTELLDILIARALVRK 365 >gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes HCC23] gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDSIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161] gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900] gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 83/344 (24%), Positives = 148/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 +A++ GG S E EVSL+S + + + + I + + + Sbjct: 6 IAIIFGGCSPEYEVSLNSASSVIKHINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWY 65 Query: 48 HLK----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 K D AF VLHG GEDG VQ +L+L IP+ Sbjct: 66 QEKGCNPVAFSQSPSIHGFYEFSEESSSITYVDAAFPVLHGRNGEDGTVQGMLKLAGIPF 125 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLK 134 G+L+SA+ MDK + ++ S GV V SI ++ + ++ + P +KP + Sbjct: 126 VGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSISADKAMLLKDILNKAETLRYPVFVKPAR 185 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192 GSS GI + + ++ + + +++IE+ +DG E+ C + + + + Sbjct: 186 AGSSFGISRVIDRAELEKAIINAF--EYDSKIVIEENIDGFEVGCAILGNDNLVIGEVDE 243 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +S + Y KY+ S +PA+I + ++ A + + A+ C G +R D P Sbjct: 244 IELQSGIFDYNEKYTLKTSKIHMPARIDTVTAERIKDTARILYNALCCTGFARVDMFLTP 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ + E+N PG T S +P M G SF ++ ++ A Sbjct: 304 K-GEIVFNEVNTIPGFTAHSRYPNMLRGVGLSFASIVERLIRMA 346 >gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505] Length = 315 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q IL L +PY + + K +K V + GV S+ + + Sbjct: 68 GPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + + + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ V Y + +Y+ S + +PA++ + ++V+ Sbjct: 186 YVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + A H +G +SR+D + D +++++NV PGMT S+ P A G S +L Sbjct: 246 KTAITVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAEAEG-SLDDL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 375 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68 Query: 37 DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DV R L P D+ F ++HGN GEDG +Q +L LL PY SG Sbjct: 69 DVARQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 +L SA+S DK +K+++ GV + + +KP GS Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194 S+GI ++ + + + +++L+E+ ++G E ++ Sbjct: 189 SVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246 Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +D Y + +P IP + KE+ ++A +++A+G +G++R DFL Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDIPEALSKELTKMALDSYRALGLKGMARIDFLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T +S++P++ A +G S+REL+ +++ A Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLA 350 >gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 348 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L++PY + IL+S+++MD Sbjct: 68 NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P + + L +S P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G S+ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336 >gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271] Length = 367 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 51/346 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E ++SL S ++ ++V + + + + Sbjct: 8 IVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSNQL 67 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + F VLHG GEDG +Q LE+L +PY Sbjct: 68 ALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGMPY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130 +G+ ASA MDK+ SKQ+ G+P P + + + + + P + Sbjct: 128 VGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLFV 187 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + E+ DA V Sbjct: 188 KPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAHASVV 247 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 V +DFY Y+ KY + +PA++P I ++Q A A++A+ +G+SR DF Sbjct: 248 GRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDFFV 307 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG TP S++P + G + R+L+ +++ A Sbjct: 308 TA-SHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352 >gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 321 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 150/307 (48%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A AL AG + S D D ++ L P + + VLHG Sbjct: 11 VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG + +LEL +PY S ++ L+ DK +K + S G+ S+ + + T Sbjct: 71 GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + PY +KP +GGS+ G+ ++ +++P + ++ +GD LIEQ V Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAM--VDAYTYGDVALIEQLV 188 Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G E+ VP S Y YE +Y++ + PA+I D Sbjct: 189 EGTEVAIGILDTGDGPEALPATEIVPTSGVYGYEARYNAGLTRFFTPARISPDANAAASA 248 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A H+A+G +SR D + D + +++E+NV PG+T S+ P+ A AG +L Sbjct: 249 AAIGIHRALGIGQMSRVDIIIDAA-GEPWFIEVNVIPGLTETSLLPQGLAAAGVEVGDLY 307 Query: 290 LWMVEDA 296 + E A Sbjct: 308 RRLAEAA 314 >gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 145/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354 >gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928] Length = 315 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 20/312 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VS+ SG+ A AL AG +V D+D ++ L +PD F LHG Sbjct: 7 VVVLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ IL LL +PY S A + DK +K + + G+ + + + T Sbjct: 67 ATGEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRD 126 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP +GGSSLG + + +P + + + + + LIE+ Sbjct: 127 LGTHAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAM--VACFAYDETALIER 184 Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++ G E+ V+ V S Y Y +Y++ + PA++ + K V Sbjct: 185 HITGREIAVSVVDTGTGPQALPAVEIVADSGVYDYAARYTAGITEFFAPARLTAEEAKSV 244 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS--- 284 ++LA AH + +SR+D + D ++LE+NV PG+T S+ P A A Sbjct: 245 EQLAVRAHTTLDLSCVSRTDLILDA-DGIPWFLEVNVAPGLTETSLLPLAAGAADLDLGV 303 Query: 285 -FRELLLWMVED 295 +R+L+ ++ + Sbjct: 304 LYRDLVQAVIAE 315 >gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 354 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 147/349 (42%), Gaps = 52/349 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAH----- 48 AV+ GG SSE VSL S + +L +++ I + + + H Sbjct: 7 AVIFGGKSSEYPVSLHSAASLIRSLHKDKYELIFIGISKDGEWFAYDGDVDAIEHDTWMD 66 Query: 49 ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 L D F VLHG GEDG +Q + EL IPY Sbjct: 67 GNITPCVLSCSTAQKGFLKLKEDGSYETLPVDCIFPVLHGKNGEDGTIQGLFELSGIPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------PPYVIKP 132 ++SA+ MDK + V+ + G+P P + V I P IKP Sbjct: 127 GCDHMSSAICMDKEMAHIVMENAGIPCAPYLCVYEDEHLDYRHIYEEAKAKLGLPIFIKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VT 190 GSS GI I + + + ++++E ++G E+ C VMG+ L Sbjct: 187 ANAGSSFGIHKIASFDDFEESMKDAFYHDGRGKVILETTIEGFEIGCAVMGNKELFAGSV 246 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + + F+ YE KY ++S PA+I ++++E + LA A++A+ C+G++R D Sbjct: 247 DEIETAAPFFDYEGKYQMVDSHIYCPARISKELFEEARSLALKAYRAMNCKGMTRVDMFV 306 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 P + + E+N PG T S +P M AG F +LL ++ A Sbjct: 307 TPQ-QSIVMNEVNTIPGFTDTSRYPTMMKEAGIEFGDLLDKLIAFALTR 354 >gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVAPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN] gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923] gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae] gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923] Length = 384 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 69/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 +AV+ GG S+E VS S + L+ F V + + +L PD Sbjct: 20 VAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIANRQ 79 Query: 53 -------------------------------------------LAFNVLHGNFGEDGLVQ 69 + F VLHG +GEDG +Q Sbjct: 80 LPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDGTIQ 139 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLIS 125 +LEL +PY +G+LASA MDK +K++ ++ G+P+ + +S Sbjct: 140 GLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLHRQECERLS 199 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P +KP +GGSS+GI + +P + + H ++++E V+G EL CGV+ Sbjct: 200 LPVFVKPARGGSSIGISRVSSWGQLPSAIAYAR--RHDPKVIVEAAVNGRELECGVLEMP 257 Query: 186 S----------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + V ++ + FY + KY + +PAK+ D+ EV++LA A Sbjct: 258 DGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPAKVDDDVADEVRQLAIQAF 317 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI C+G++R DF EIN PG T S++P++ A + + LL MV+ Sbjct: 318 RAIDCQGLARVDFFLT--DDGPVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATMVDT 375 Query: 296 ASCL 299 A Sbjct: 376 ALAR 379 >gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 364 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF + EIN PG T +S++P M A +G + LL M+E A Sbjct: 300 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 359 >gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85] Length = 379 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF + EIN PG T +S++P M A +G + LL M+E A Sbjct: 315 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 374 >gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 370 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 AATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI Q + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKDYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23] Length = 330 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 31/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +D+ D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+GL+Q +L+ +PY+ SG+L A++ DK Q + Sbjct: 68 SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127 Query: 101 SSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV + + + I P +KP GSS G+ +K+ + + Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 + ++++E Y++G E++ GV V A + + Sbjct: 188 --RKAMLESPEIMVESYLEGTEISIGVYKTKEKAVVLPATEVVTSNEFFDYDAKYNGQVQ 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++P D+ + V+++ + + C GI R DF+ + LE+N PGMT S Sbjct: 246 EITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISKE-GSISMLEVNTTPGMTATS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ AG S ++L +VE+ Sbjct: 305 FIPQQVRAAGLSMTDVLTEIVEN 327 >gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165] Length = 365 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + VL GG+SSE EVS S L+ A ++V + + R + Sbjct: 10 VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + L D+ LHG +GEDG VQ +LEL IP Sbjct: 70 ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129 Y G+LASA+ MDK + + + G+P + R+ + + P Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + +++ E +VDG E+ C V+G Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALAL--ENDHKVVFEAFVDGHEVECAVIGSDPAVA 247 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA++ + EV+ A +A+ A+ C G++R D Sbjct: 248 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCD 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG TP+S++P++ + G L+ ++E A Sbjct: 308 FFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356 >gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron VPI-5482] gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482] gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6] gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14] Length = 324 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++L+E +++G ELTCG V + + + Sbjct: 185 AFEEA--QEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 IATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI Q + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 IATDKIELALIETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + +P + + + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI Q + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+T ++P ++ ++ +++ A A + G+ R+D Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + +G + L+ +V+ A Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354 >gi|256826798|ref|YP_003150757.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256582941|gb|ACU94075.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 327 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 37/329 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ER +SL SGK ALE+AG KV +D + + L +PD+A++ LHG Sbjct: 3 VAVLMGGASFERAISLDSGKRVCEALEEAGHKVVPLDTTKDLVPTLRSERPDVAYSALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--------------------KQVV 100 GEDG +Q++LE LEIP+ S + +K + V Sbjct: 63 KHGEDGTIQSLLEFLEIPFVGSPAAVCHDTWNKATIPLALRSWAAGQGGMSSASYPQGVC 122 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + + P +KP GGS+LG+ ++ + + L + Sbjct: 123 LARDAMKDMGAATAIDLFEQRIPGGYPLCVKPACGGSALGVHRVECVEDMGAAL--LDAL 180 Query: 161 NHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + D++L+++++DG+E+ DA + + Y + + S + P Sbjct: 181 TYDDEVLVQEWIDGVEVAVSILGNGWDAHALPPVEIIVRDGLYDTDARLSDEAVDYYTPV 240 Query: 218 KIP---------LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + I E++R + ++A G + R D ++D + LE+NV PGM Sbjct: 241 RPSSLSNNEADAQAIRAEIERASLEVYRAYGVCDMGRVDLIWDGAQAR--VLEVNVSPGM 298 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV-EDA 296 T S+FP AG S +L +V E A Sbjct: 299 TERSLFPVACDAAGLSMTAVLDRLVCEHA 327 >gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+ + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIQQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b str. F2365] gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459] gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175] gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503] gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262] gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816] gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220] gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1] gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1] Length = 353 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13] gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915] gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13] gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653] Length = 353 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++ + G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591] gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3] Length = 348 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + ++ + + ++ P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G D + V FY Y+ Sbjct: 188 LAGLHKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 246 KYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336 >gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 316 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 16/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ + AL D G V + D D S+ L KPD A LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GE+G +Q +LE+L +P+ + + DK +K +VS G + + T Sbjct: 66 GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125 Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V++ +P + + +GD +L E+ Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAM--VGCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++DG+E+ V+ VP+ Y Y +Y++ + PA++ ++ + V Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEIVPEGGVYDYTARYTAGLTDFFAPARLSEEVAEAV 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA AH +G R ISR+D V +LE+N PG+T S P AG S Sbjct: 244 SDLAVSAHTLLGLRDISRTD-AVVASDGTVHFLEVNSSPGLTETSTVPMALEAAGTSLGA 302 Query: 288 LLLWMVEDA 296 + +V+ A Sbjct: 303 VFTDLVQRA 311 >gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium] Length = 343 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AVL GG S E VS+ S A+ ++ ++ I + +S + Sbjct: 6 VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65 Query: 51 -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 D+ ++HG FGEDG +Q +LEL IPY I Sbjct: 66 PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +S MDK + VV + G+ V ++ P +KP + GSS G+ + Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 K + + + + + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 186 KAEELQAAIEDAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243 Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + +PA +P ++ + +Q+ A ++ +GCRG++R D + Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG++ E+L ++E + Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340 >gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330] gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686] gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330] gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365] gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40] gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686] Length = 353 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e] gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561] gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946] Length = 324 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 95/321 (29%), Positives = 154/321 (47%), Gaps = 33/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG S E EVSLSS + +A+ + + +L Sbjct: 8 LIAGGRSGEHEVSLSSARGVLAAMP---HPTDLAVIAKDGKWLLGQAAQRALHTGSAEEG 64 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 +AF +LHG GEDG +Q E+L +PY +G+ ASAL MDK K+ Sbjct: 65 EHAFPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKR 124 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ G+PV P + R PY +KP GSS+G+ +K DQ L ++ Sbjct: 125 VLAQAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAF 184 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 W +++IEQ ++G+ E+ A V +S+FY Y+ KY+ + + Sbjct: 185 RW--DRKVVIEQGLEGVRELEIALLGNIYAEPSVIGEISYQSEFYDYQTKYTEGLAHMRI 242 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP ++ K ++ LA A++ +G RG++R DF ++ E+N PG TP S++P Sbjct: 243 PARIPAELEKRIRELAVAAYRVLGVRGMARVDFFLS-QDGTLYLNELNTIPGFTPTSMYP 301 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 ++ +G + ELL +V A Sbjct: 302 KLWQASGMRYPELLDRLVRLA 322 >gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S] gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165] Length = 370 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella anatipestifer RA-GD] Length = 327 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 33/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + + P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAALE 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++L+E ++DG+E++ G+ + +P+++F+ YE K S Sbjct: 186 KAF--LEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQ 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++PA++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P S Sbjct: 243 EIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPAS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299 I P+ A G S +L VE A Sbjct: 301 ILPQQARIYGISITDLCGNEVEKALAK 327 >gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268] Length = 356 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 143/350 (40%), Gaps = 59/350 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG S+E EVS S A+ +KV I + +S + Sbjct: 7 VLLFGGQSTEHEVSCRSVLTIKRAVNQEKYKVLCIGITKSGEWIPVEKEESIEDGSWKES 66 Query: 49 --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 K D+ F VLHG GEDG +Q +LE+ IPY Sbjct: 67 AERAMILPDAKLSSVLFLGKNGESHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVGC 126 Query: 83 GILASALSMDKMRSKQ------------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130 G+L+SA+SMDK+ +K + + +S P + Sbjct: 127 GVLSSAISMDKVYTKMAVEKPLAKIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-- 188 KP GSS G+ K +++ + + S ++L+E+ + G EL C V Sbjct: 187 KPSNAGSSCGVSKAKDREALKKAVENALSV--DRRVLVEESITGRELECAVFSGKEGQVE 244 Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + ++FY Y+ KY++ +S L I +I +++++ A A+ +SR Sbjct: 245 SSSVGEILAAAEFYDYDAKYNNPDSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSRV 304 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +V + EIN PG T +S++P + GYS EL+ ++E A Sbjct: 305 DFFL--SGEEVIFNEINTMPGFTSISMYPMLFKKKGYSIEELVEKLLESA 352 >gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 348 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KP------- 51 +L GG S+EREVS+ S ++ A+ F V + +S KP Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKLM 66 Query: 52 --------------D------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D + F +LHG GEDG +Q LE+L++PY + IL+S+++M Sbjct: 67 TNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S GVP + + +S P +KP GSS+GI Sbjct: 127 DKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGISKAD 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYE 203 + + + + + ++LIEQ VD E+ G D + + V + FY Y+ Sbjct: 187 SETELREAIQLAL--QYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEVVKEVAFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA++ D+ +++ A A +A+GC G+SR DF ++ E+N Sbjct: 245 AKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDFFLT-KDGFIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G S+ EL+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYPELIERLVILA 336 >gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 342 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 137/338 (40%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ I + + L Sbjct: 6 VGIIFGGASEEHPVSVKSAQEVARHLDTGKYEPFWIGITKDGAWKLGDGPGESWEAGRTV 65 Query: 47 -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + D+ VLHG GEDG +Q +LEL IPY + +S Sbjct: 66 VLSPDRSVPGLLVLEDGKYETIGLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 AL MDK + V +S G+ V + P +KP + GSS G+ + Sbjct: 126 ALCMDKSLAYVVAASAGIATPKFRTVLAGDD--AGAFTYPVFVKPARSGSSFGVSKVSGR 183 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + + ++ + ++LIE+ V G E+ C V+G+ + + + + Sbjct: 184 EELAAAISTAA--QYDAKVLIEEAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQ 241 Query: 208 SLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 T ++PA +P + VQ+ A ++A+GC+G++R D V Sbjct: 242 EEQPESGSENSTPIVPADVPAETRARVQQTAKAIYRALGCKGLARVDMFLT-DDGTVVLN 300 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 E+N PG+T S +P M A AG L+ +V A Sbjct: 301 EVNTLPGLTSYSRYPRMMAAAGVPLSALIDRLVSLAMT 338 >gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5] gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5] Length = 351 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + +PD + F LHG GE+G +QA Sbjct: 63 EIAKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129 +LL I YT L A++MDK +KQ+ G+ + +++ + P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ + L S + D+++IE+Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVTTESEYEEALSSSF--RYEDEVVIEEYIKGREFACGIIDGEALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY + + V PA I D + L A++A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D ++ LE+N PGMT S+ P+ A +G + +L +++ + R Sbjct: 300 LDSRGN-LYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQKSLEAR 349 >gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840] gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840] Length = 366 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ ++P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803] Length = 353 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV--------LAH 48 + V+ GG S E VS+ S + A F V +DR L Sbjct: 8 VGVVFGGASGEHAVSIRSARTVIEAFSAPENQERFAVIPHYIDREGRWWGPAVAERALEQ 67 Query: 49 LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K DL + VLHG GEDG VQ + L+ P+ SG Sbjct: 68 NKALDAHELPQPLPAPGLRHWPVDPDSVDLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKP 132 +L SA+ MDK+ K ++ G+ P + + + + + P +KP Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYMGLTAADLEDPERLEQLLTRVEQELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + L Q+++ + + +E V Sbjct: 188 ANLGSSVGITKANNRDELLAGLHQAAALDPRLLVEQGVNARELECAVLGRRHLRASVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y YE KY+ S ++PA +P + +++Q +A A A+ G +R D +D Sbjct: 248 IRFDADWYDYETKYTEGRSHTLIPAPLPALVSQQIQAMAIRACHAVHAFGQARVDVFYDE 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S +++ EIN PG T S++P + A +G +L+ +V+ A Sbjct: 308 TSGEIWLNEINTLPGFTSQSMYPTLWAASGIPLPQLVAELVDTA 351 >gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 280 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 152/279 (54%), Gaps = 7/279 (2%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 A AL G+ V +IDV + V L K D+A+ LHG +GEDG +Q +LE L IPYT S Sbjct: 2 AKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTGS 61 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSS 138 G+LASA+ MDK+ +K + ++ G+P P T + S P V+KP + GSS Sbjct: 62 GVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGSS 121 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ V K ++ + ++ + LL+EQ++ G E+ V+ D +L V E+ V + Sbjct: 122 VGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAREF 179 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + S + ++ PA +P D Y+ V + AH+A+GC+G SRSD + VF Sbjct: 180 YDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGDVF 238 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 LE N PGMT S+ P++AA G F L +++ AS Sbjct: 239 VLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277 >gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750] gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 82/331 (24%), Positives = 144/331 (43%), Gaps = 37/331 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + +++ + IE+ + + DFY Y+ K Sbjct: 187 TKVELRKAIQLALTYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAK 246 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Y T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 247 YVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTM 305 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 306 PGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 320 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 16/305 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG+S ER+VSL SG A L+ G V +DVD L PD+ + ++HG Sbjct: 14 IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q IL L++PY + + K +K V + GV S+ + + Sbjct: 74 GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + + + + + ++ LIE Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAM--VACFAYDERALIEA 191 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G E+ V+ V Y + +Y+ S + PA++ + VQ Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H+ +G +SR+D + D +++++NV PGMT S+ P A AG L Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQ-GTPWFIDVNVVPGMTETSLLPLAAEAAG-DLPGL 309 Query: 289 LLWMV 293 +V Sbjct: 310 YDALV 314 >gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684] Length = 309 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 137/303 (45%), Gaps = 17/303 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 V GG S EREVS SG+ A AL G V IDV V+ +PD F LHG Sbjct: 5 VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG VQ +LE+L++PYT S LASAL +DK K V GVP P + Sbjct: 65 GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 V+KP + GSS G+ V+++ + + + ++ D++L+E+YV Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAV--LGAMSYDDRVLLERYV 182 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQR 229 G EL V+G + V + + + +P + V+ Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSEVRLAGLPDAVDAHVRA 242 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A+ A GCR +R D + + LEIN PG+T P A +AG +F +L+ Sbjct: 243 IAAEAYSAAGCRDFARVDIRL--EGDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQLI 300 Query: 290 LWM 292 + Sbjct: 301 ERI 303 >gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548] Length = 702 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 148/297 (49%), Gaps = 8/297 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L+GG S+ERE+SL SG A A AL + GF V+ DV L+ + D+ + VLHG F Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTE-CRLLPEMREADVVYPVLHGGF 377 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 GEDG +Q ++E + + SG AS L+MDK+ +K+++ G+P +V R + Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++K GS+ GI+ +++ + L + + +LL+E+Y+DGIE+T ++ Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMA--GELLVEEYIDGIEITVPIV 495 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIG 239 L EI P Y Y+ KY + + + R A + G Sbjct: 496 NGEVLPAIEIKSPHGF-YDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR I R DF+ + LE N PG T S+ P+ A +G SF ++ +V A Sbjct: 555 CRDILRVDFIV-GKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAA 610 >gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394] gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1] gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1] gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232] gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str. Manfredo] gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232] gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS] gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus pyogenes M49 591] gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180] gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005] gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429] gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096] gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131] gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS] gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336 >gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578] gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923] Length = 370 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94] gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 360 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 15 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 75 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 195 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 252 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 253 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 312 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 313 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 352 >gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94] gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 183 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1] gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1] gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33] gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1] gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94] gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99] gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94] gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1] gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1] gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33] gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10] gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99] gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513] gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1] Length = 353 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo] Length = 366 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A++ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P + + L +S P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKAES 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 ++ + +L + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA I ++ A A +AIG G+SR DF +++ E+N Sbjct: 246 KYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + + G ++ EL+ +V A Sbjct: 305 MPGFTQWSMYPLLWEHMGLNYAELIEELVRLA 336 >gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988] Length = 365 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 348 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERLM 66 Query: 46 -------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F +LHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 67 TNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + + ++LIEQ V E+ G++G+ + T V DFY Y+ Sbjct: 187 TKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVDFYDYK 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA+I D +++ A A +A+G G+SR DF +++ E+N Sbjct: 245 AKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336 >gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J165] gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2] gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2] gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1] gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2] gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1] gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3] gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2] gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2] gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2] gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3] gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2] gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3] gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1] gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3] gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2] gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1] gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266] Length = 365 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAILKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202] gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1] gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1] Length = 365 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90] Length = 348 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 183 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120] Length = 370 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 56/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P P++ V + ++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + +E+ V Sbjct: 187 KPANLGSSVGISKATNKKELAEAMTEAFLYDRRVVVEQGVVAREVEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++F E+N PG TP S++P + G + L+ +V+ A Sbjct: 307 FFLTA-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354 >gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 362 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 156/354 (44%), Gaps = 59/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG SSE VS S + L+ A ++V + + +S VL+ Sbjct: 8 VAVVFGGRSSEHAVSCVSAGSILGHLDPARYEVVPVGITQSGSWVLSDADAQSLRFADRA 67 Query: 51 ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F VLHG +GEDG +Q +LE+ + Sbjct: 68 LPSVPEGPTDLALLPGAELVSVSSDAAGSVLGSVDVVFPVLHGPYGEDGTLQGLLEMAGV 127 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPL 133 PY +G+LASA MDK +K+++++ G+PV ++ + + H + P +KP Sbjct: 128 PYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFHVLRQRETEVPPEVLHRLGLPLFVKPA 187 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190 +GGSS+GI + ++P + ++ W +++IE V G E+ GV+ V Sbjct: 188 RGGSSIGITRVTDLAALPAAIAEARRW--DPKVIIEAAVIGREVEIGVLERPDGTVHASA 245 Query: 191 -----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 A + FY +E KY + + +PA + + + LA A A +G++R Sbjct: 246 IAEIEMAADAEHAFYDFETKYLDDRAQYTVPADLTEEQTSAIAELAVRAFHAFDGQGLAR 305 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF E+N PG T S++P M A +G + ELL +++ A Sbjct: 306 VDFFQTAEG--PVINEVNTMPGFTSTSMYPRMWAESGIGYAELLSLLIDTALAR 357 >gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A] Length = 366 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 21 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 81 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 201 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358 >gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457] gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457] gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str. 63/9] gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28] Length = 353 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154] gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 372 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDHVGRWYLIDQPEMFLAHSPDH 66 Query: 50 ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY N + + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + KV EIN PG T +S++P+M +G LL ++E A R Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354 >gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941] gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus 2308] gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19] gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str. 870] gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str. Tulya] gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str. 86/8/59] gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str. 292] gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str. C68] gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str. 9-941] gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus 2308] gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19] gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038] gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292] gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59] gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870] gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68] gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya] gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196] Length = 353 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021] Length = 318 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ + L AG V D D S+ + PD F LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++++LELL +PY +G A ++ DK +K VV S G+ S+ + + T Sbjct: 69 GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+LG +++ + +P + + +GD LIE+ + Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAM--VGCFAYGDTALIERCI 186 Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 +G+E+ V+ VP Y Y +Y++ ++ PA++ + Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEIVPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACAE 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R ISR+D + D +LE+NV PGMT S+ P AG L Sbjct: 247 MAVTAHTALGLRDISRTDLIVDG-DGLPHFLEVNVAPGMTETSLLPMAVEAAGDDLGTLC 305 Query: 290 LWMVEDASCL 299 ++E A+ Sbjct: 306 RVLLEQAAAR 315 >gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1] Length = 364 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+SL S S+L + V I VD+ + L Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIKRH 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ D+ F ++HG GEDG +Q +++++IP +GIL SA+ Sbjct: 67 TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +PV I + D + ++ P ++KP GSS+G Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I V I + ++ + +++E+++ E+ C EI V Sbjct: 187 INVAYNVSQIEKYIEEAF--EYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244 Query: 198 DFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS++ +PA + + +++ AFL ++ + RG++R DFL + Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S+F +M + G S+ L+ ++ A Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346 >gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +V++ S + SA+ ++V I +D++ V L P+ Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P +KP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 188 MGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEVV 247 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + FY Y KY + +PA +P D+ ++ + A A+ +G G+SR DF Sbjct: 248 KEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYTMLGGSGLSRCDFFLT-NK 306 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQL 347 >gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 363 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 55/349 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG+SSE EVS S + ++ ++V + + + + Sbjct: 8 VVLLFGGMSSEHEVSRVSVGNFVNNIDREKYEVLTVGITKEGRWLYTEATAAQMADGSWE 67 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + + D+ VLHG +GEDG VQ +LEL IP Sbjct: 68 DLAGNMACVISPDRADHGMILFTPEGHVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129 Y G+LASA+ MDK + + + GVP + +R+ + + P Sbjct: 128 YVGCGVLASAVCMDKAVANALFEANGVPHTRWLAADRWEIESDLEGVCDGVEKKLGWPVF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI + + + + + +++ E +VDG E+ C V+G Sbjct: 188 VKPANAGSSVGISKVSSRDELKKAIDLAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 245 Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 T + ++FY+Y+ KY + S V+PA +P EV+ A +A+ A+ C G++R D Sbjct: 246 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAIAYTALNCEGLARCD 305 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + + +V EIN PG T +S++P++ + G +L+ ++ A Sbjct: 306 FFVEKGTGRVLINEINTFPGFTSISMYPKLMEHEGLPVPQLIDRLIALA 354 >gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 348 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 41/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52 +L GG S+EREVS+ S ++ A++ F V + +S + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRAALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335 >gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916] Length = 353 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 85/344 (24%), Positives = 147/344 (42%), Gaps = 48/344 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E VS+ S +ALE F VS +D VLA Sbjct: 8 IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67 Query: 49 LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 +P ++ + VLHG GEDG VQ + L+ P+ +G Sbjct: 68 GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKP 132 +L S+++MDK+ K ++ G+ P + +N + + + P +KP Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS+GI + + L +++S + + +E V Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASLDPRIVVEQGVDARELECAVLGKRQLKASVVGE 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +D+Y Y KYS ST ++PA IP + +V+ +A + +A+ G++R DF +D Sbjct: 248 IRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFYDD 307 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + ++ EIN PG T +S++P + +G +L+ +VE A Sbjct: 308 RTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351 >gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1] Length = 365 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRKAVLKAVSRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium] Length = 358 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+ EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342 >gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 358 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 49/340 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S E VSL S A ++L+ + V I + Sbjct: 7 VLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISELMY 66 Query: 46 -----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + ++ F LHG GEDG +Q +LE+L+IPY +G+++SA Sbjct: 67 QSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMSSA 126 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSL 139 + +DK+ +K + + +P + + + I P +KP GSS+ Sbjct: 127 IGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKS 197 GI + + + ++ + D+L+IE+ + G E+ V + + Sbjct: 187 GINRCANREELEAAIHEAF--SFEDKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQER 244 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 F Y KY+ V+PAK+ + + ++ +A + + C G+ R D+ + Sbjct: 245 QFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVT-DDERF 303 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 + E+N PG T +S+ P + ++ EL+ ++ A Sbjct: 304 YVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343 >gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 370 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 149/360 (41%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51 +A++ GG S E VS + + A++ + V I + R V L P Sbjct: 6 VALIYGGASGEHSVSCMTAASVLRAMDPDKYDVVPIGIRRDGTWVPGSADPDALEAAGPQ 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+AF +LHG FGEDG +Q L Sbjct: 66 GEVGGSPSRVLIEIGGKPRALTLVESEGGAPVVEALGSFDVAFPLLHGPFGEDGTIQGFL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHL 123 E+ +PY G+ ASA MDK K V+ S G+ V P +LV Sbjct: 126 EMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYVLVAPRRWRTEKGQILAEIAQK 185 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181 ++ P +KP + GSSLGI + + + + + ++++EQ V G E+ C V Sbjct: 186 LTFPVFVKPARAGSSLGIGKVLEPGGLERAIAAAQKV--DPKVIVEQGVKGREVECAVLG 243 Query: 182 ----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236 + + EI + +D+Y +E KY H+ +PA + D+ E +R+A + Sbjct: 244 GRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAVPAPVEADVEAEARRIAARVFE 303 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A C G++R DF ++ E N PG T S++P + + G + EL+ +V A Sbjct: 304 AFDCEGMTRVDFFLT-DDGEILVNEHNTIPGFTEFSMYPILWEHTGIPYSELIDELVALA 362 >gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 374 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 80/358 (22%), Positives = 149/358 (41%), Gaps = 63/358 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE E+S + + S ++ +++ + + R+ VL P Sbjct: 10 VAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRIDAGT 69 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ +LHG FGEDG +Q + E Sbjct: 70 RALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQGLFE 129 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP------ 127 ++ + Y +G+ +S+ SMDK+ K ++ G+P + + ++ Sbjct: 130 MMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVAELG 189 Query: 128 --YVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +KP + GSS+GI V + + ++ H ++L+E V G E+ CGV+ Sbjct: 190 ATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGVLES 249 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAHQAI 238 ++++P + + + + +PA++P + ++ LA +A+ Sbjct: 250 EDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSSLTIPAELPEEATARLRALAAEVFEAM 309 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC G++R DF + + E+N PG TP S FP+M A G + L+ M+ A Sbjct: 310 GCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMISTA 366 >gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium matruchotii ATCC 14266] Length = 356 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 57/349 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE VS S A S L+ +++ I + + + P Sbjct: 10 IAIIYGGRSSEHSVSCISAGAIMSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGA 69 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F VLHG +GEDG +Q + EL +P Sbjct: 70 MPTVTLTKEVSLAADPARRGQFRFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVP 129 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135 Y +G+L+SA MDK +K+++++ G+PV +++ T L+ P +KP +G Sbjct: 130 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARG 189 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + + + + L ++ + ++++E + G E+ CGV+ V Sbjct: 190 GSSIGISRVTRWEDMDAALREAR--QYDTKVIVESEIIGDEVECGVLEYPDGTVVASVPA 247 Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 FY ++ KY + + ++PA + + +Q LA A QA+ C G++R D Sbjct: 248 QLVNTSVGHEGFYGFDAKYVDGDVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVD 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F E+N PG TP+S++P++ A +G + ELL ++ A Sbjct: 308 FFVTQAG--PVLNEVNTMPGFTPISMYPQVFAASGVPYAELLDTLIARA 354 >gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly] Length = 364 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 154/342 (45%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+SL S S+L + V + VD+ + L Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ D+ F ++HG GEDG +Q +++++IP +GIL SA+ Sbjct: 67 TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +PV I + D + ++ P ++KP GSS+G Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I V I + ++ + +++E+++ E+ C EI V Sbjct: 187 INVAYNVSQIEKYIEEAF--EYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244 Query: 198 DFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS++ +PA + + +++ AFL ++ + RG++R DFL + Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T +S+F +M + G S+ L+ ++ A Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346 >gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1] Length = 365 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGRYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine Ligase (Ddl) From Streptococcus Mutans Length = 383 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 44/335 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52 +L GG S+ER+VS+ S ++ A+ F V + ++ + + D Sbjct: 41 VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 99 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 100 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 159 Query: 91 MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 MDK+ + Q + V + + + + + P +KP GSS+GI Sbjct: 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 219 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201 + + + + + ++LIEQ VD E+ G+ D + V FY Sbjct: 220 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 277 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ E Sbjct: 278 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 336 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T S++P + G S+ L+ +V A Sbjct: 337 LNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371 >gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159] gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159] Length = 349 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 44/335 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52 +L GG S+ER+VS+ S ++ A+ F V + ++ + + D Sbjct: 7 VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 65 Query: 53 ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + F VLHG GEDG +Q LE+L++PY + IL+S+++ Sbjct: 66 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125 Query: 91 MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 MDK+ + Q + V + + + + + P +KP GSS+GI Sbjct: 126 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 185 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201 + + + + + ++LIEQ VD E+ G+ D + V FY Sbjct: 186 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 243 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY T +PA+I I ++++ A A + +GC G+SR DF KV+ E Sbjct: 244 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T S++P + G S+ L+ +V A Sbjct: 303 LNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 337 >gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 348 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 41/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52 +L GG S+EREVS+ S ++ A++ F V + +S + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+P P + V + + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGISKSEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRTALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335 >gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 333 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 140/325 (43%), Gaps = 32/325 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG S E +VS+ S + S + + + +D +DR+ Sbjct: 8 IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67 Query: 44 LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + D A+ +HG GE+G++Q +L+ +PY+ SG+L +++ DK Sbjct: 68 SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127 Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + GV V SIL+ R + + P +KP GSS G+ +K + L Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAPALR 187 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTH 213 + D+++IE +++G E++ G V A + + Sbjct: 188 TAFM--ESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEVVTKNEFFDYDAKYNGQVKE 245 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGMTP 270 + PA++ + K V + + C GI R D++ D + K+ LEIN PGMT Sbjct: 246 ITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPGMTE 305 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 TSFIPQQVRAAGLDIKDVLSDIVEN 330 >gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 348 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERLM 66 Query: 46 -------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 +KP + F VLHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 67 TNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + + ++LIEQ V E+ G++G+ + T V +FY Y+ Sbjct: 187 TKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVEFYDYK 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA+I D +++ A A +A+G G+SR DF +++ E+N Sbjct: 245 AKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336 >gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium] Length = 359 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +V++ S + SA+ ++V I +D++ V L P+ Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P +KP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 188 MGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEVV 247 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + FY Y KY + +PA +P D+ ++ + A A+ +G G+SR DF Sbjct: 248 KEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYPMLGGSGLSRCDFFLT-NK 306 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N PG T S++P + G + +L+ +++ Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQL 347 >gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B] Length = 311 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 148/292 (50%), Gaps = 6/292 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL+GG ++ER VSL SG+ A+ L G +V ++D G D AFN+LHG Sbjct: 12 AVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVD-TADNGWQQQLKGVDFAFNLLHGP 70 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG VQ LE IPY+ SG+L SAL+MDK R+K + + G+P +L+NR + Sbjct: 71 GGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNRDSEWQA 130 Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP + GSS+G+ + ++ ++G ++ EQY++G E T Sbjct: 131 IIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAA--SYGTAVMAEQYIEGSEYTVA 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L + FY +E KY S ++ P+ + + +LA A A G Sbjct: 189 ILGDRALPSI-RIETDAAFYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAATGA 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 R D + LE+N PGMT S+ P A AG S ELL + Sbjct: 248 SVWGRVDV-LRRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELLAAI 298 >gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2] Length = 359 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 51/345 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44 VL GG S E EVSL + ++ ++ ++ + + R Sbjct: 7 VLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIERLI 66 Query: 45 ------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++A P + +LHG GEDG VQ +LEL+ +PY +G+L+ Sbjct: 67 ATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGVLS 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137 +AL++DK SKQV++ G+ + + + I P +KP GS Sbjct: 127 AALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPASLGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVP 195 S+GI + + ++ ++ +L+IE+ V G E+ V+G+ + + Sbjct: 187 SIGISRCTNRGELLAGIREAF--SYDKKLVIEREVSGREIQVAVIGNERPLASLPGEFIH 244 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 F+ YE KY T +PA + + ++ LA A+QA GC G++R DF D Sbjct: 245 DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLDGE-G 303 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASCL 299 +++ EIN PG T S++P M G ++ EL+ ++ A Sbjct: 304 QLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIAR 348 >gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC 8503] gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503] Length = 330 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE +SL S S ++ + + V R V+ Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + G ++++E+++DG E+TCG +V + + + Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + +Q + +G +G+ R D++ P + LEIN PGMT S Sbjct: 243 TPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK137] gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1] gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1] gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1] gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1] gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1] gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1] gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1] gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1] gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2] gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1] gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2] gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1] Length = 365 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAVSRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM 7109] gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 362 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 95/355 (26%), Positives = 158/355 (44%), Gaps = 63/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV+ GG S+E VS S A L+ F V + + V Sbjct: 9 VAVVYGGQSTEHSVSCISAGAIIDNLDPERFTVVPVGITNGGAWVPGATDTAQLRASGRE 68 Query: 47 --------AHLKP--------------------------DLAFNVLHGNFGEDGLVQAIL 72 H++P D+ F VLHG GEDG +Q + Sbjct: 69 LPTVADHGEHIQPMLGAAGEATEFRFVTGDRAGDVFATADVIFPVLHGANGEDGTIQGLF 128 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYV 129 +LL Y +G+LASA MDK +K++ G+P P ++++ T + L+ P Sbjct: 129 DLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEVVLHGRTELTDHERELLGLPVF 188 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +GGSS+GI + + +P + +++ +H +++IE + G E+ CGV+ + Sbjct: 189 VKPARGGSSIGISKVDSWRDLPAAIEEAA--SHDPKVIIEAMITGPEVECGVLEREDGTL 246 Query: 190 TEIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + FY ++ KY + +PA + + + VQ+LA ++A+GC Sbjct: 247 VASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLDEETTRRVQQLAIETYRALGCT 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R DF EIN PG TP+S++P+M G S+ +LL +V A Sbjct: 307 GLARVDFFVTDAG--PVLNEINTMPGFTPISMYPQMFLADGVSYADLLTTLVSGA 359 >gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P] Length = 324 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A++MGG SSE ++S+ SG L+ + ++ +D++ Sbjct: 5 IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L A + D FN +HG GE+G + A L+ + +T + AL+ +K + VV Sbjct: 65 SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124 Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+ ++ +N + P IKP K GSS GI + ++I + Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + ++ ++LIE ++ GIE++ GV+ + V ++DF+ Y+ K + S Sbjct: 183 ALAYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEIVSENDFFDYDAK-YNGKSKE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + K+V+ A ++ + G SRS+F+F ++ + ++LEIN+ PG+T SI Sbjct: 242 ITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQSI 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S +L + A Sbjct: 300 LPQQALAAGISLADLFDNAIVSA 322 >gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 315 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 137/307 (44%), Gaps = 16/307 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER++SL SG A L+ G V +D+D L PD+ + ++HG Sbjct: 8 IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +L L +PY + + K +K V + GV S+ + Sbjct: 68 GPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYFSQ 127 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V+KP +GGS LG+ + + + + + ++ LIE+ Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 YV G EL V+ V Y + +Y+ S + +PA++ + + V+ Sbjct: 186 YVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIEMVK 245 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A H +G +SR+D + D +++++NV PGMT S+ P A G L Sbjct: 246 STAVTVHSTLGLGNLSRTDLILDEE-GTPWFIDVNVIPGMTETSLLPIAAKAEG-GLEGL 303 Query: 289 LLWMVED 295 +V + Sbjct: 304 YDALVRN 310 >gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 51/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 V+ GG+S+E EVSL S A ++ + + + + + + + Sbjct: 8 VIFGGMSNEYEVSLKSAAAAIENMDLSKYNLMMLGITQEGKWLRFFGDVEMIRNHTWLTD 67 Query: 46 ----------------LAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L L P D+ F +LHG FGEDG +Q +LEL IP+ Sbjct: 68 KSCVEAFISPSREQKGLIELSPEGYKVTEVDVVFPILHGKFGEDGTIQGLLELSGIPFVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGG 136 LASA+ MDK + ++V+ G+ V SI++ + +++ I P IKP K G Sbjct: 128 CRTLASAICMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSG 187 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAV 194 SS+GI + + + + ++ D+++IE+ ++G E+ C + + + + Sbjct: 188 SSIGITKVFHFEQLEDAISKAF--LEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIE 245 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 DF+ + KY NS +PA++ ++ ++++ A ++ + C G++R D Sbjct: 246 LMGDFFDFNEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVDMFLT-QG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++++ E+N PG T S +P+M + G S+ +++ ++E A Sbjct: 305 NEIYFNEVNTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346 >gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84] gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7] gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14] Length = 348 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 68 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + ++ + + ++ P +KP GSS+GI + Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G D + V FY Y+ Sbjct: 188 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 246 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336 >gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 375 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68 Query: 37 DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 DV R L P D+ F ++HGN GEDG +Q +L LL PY SG Sbjct: 69 DVVRQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 +L SA+S DK +K+++ GV + + +KP GS Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194 S+GI ++ + + + +++L+E+ ++G E ++ Sbjct: 189 SVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246 Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 +D Y + +P I + KE+ ++A +++A+G +G++R DFL Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDISEALSKELTKMALDSYRALGLKGMARIDFLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T +S++P++ A +G S+REL+ +++ A Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLA 350 >gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595] Length = 372 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 156/360 (43%), Gaps = 67/360 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +S+++ A +L+ + V I + R V Sbjct: 8 VAVIYGGASGEHSISIATAGAVMRSLDPERYDVLPIGITRDGAWVPGATDASQLTLEAGL 67 Query: 50 ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73 D+ F +LHG FGEDG +Q +LE Sbjct: 68 LEVEAAPEAVTLPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125 + +PY G+ ASA MDK K V+ + G+PV P ++ + +S Sbjct: 128 MAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADVAKMS 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179 P +KP + GSSLGI + + + +P + + H ++LIEQ V+G E+ C Sbjct: 188 FPVYVKPARAGSSLGITRVARIEDVPAAVAAAQI--HDPKVLIEQGVNGREIECAVLGGR 245 Query: 180 --GVMGDASLDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + +P+ FY +E KY + T +PA +P +I ++++ A Sbjct: 246 GDTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTMSIPANVPEEISEKIRAQAIATFD 305 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A GC G+SR DF P + F +E+N PG TP S++P + G + +LL ++ A Sbjct: 306 AFGCEGMSRVDFFLTPE-GETFVIELNTIPGFTPFSMYPVLWENTGLPYSQLLDELIALA 364 >gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei ATCC 334] gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334] gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Lactobacillus casei BL23] gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus casei str. Zhang] gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W] gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II] Length = 357 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 145/341 (42%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG S+ER VS+SSG +AL G + + ID+ + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62 Query: 41 SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 + + L+PD + F LHG GE+G VQA+ ++ Sbjct: 63 DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R Q + P V+KP Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G +I + + L + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIIHNQEELESGLEDVF--RFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V + + P + D+++ ++ +A +G + R DF + Sbjct: 241 VRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFANEK 300 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V+ +E N PGMTP+S+ P+ A G + +L++ +V Sbjct: 301 G--VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 >gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 44/336 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52 + VL GG S+E ++S+ + A ++ V+ + +DR KPD Sbjct: 3 IIVLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNF 62 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + F LHG GEDG +Q + E L + Y +G+LAS+ M Sbjct: 63 QLDQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGM 122 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142 DK+ SK +++ G+P P + + + + ++ P +KP GSS+G Sbjct: 123 DKIVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVG-- 180 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIE---QYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 V + L + ++ + ++L+E Q +EL + + V F Sbjct: 181 VSEAIDDASLLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQGF 240 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y+YE KY + ++PA I ++Q A A A+ G+SR+DF + +++ Sbjct: 241 YNYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYI 299 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 E+N PG T S++P + +G S+ +LL +++ Sbjct: 300 NEVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQL 335 >gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977] gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus] Length = 381 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 153/364 (42%), Gaps = 69/364 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG SSE +S S + L+ A ++V + V G VL P Sbjct: 17 VALVFGGRSSEHAISCVSAGSILRNLDQAVYEVVAVGVTPEGGWVLTDGDPAQLAISDRT 76 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D+ F VLHG +GEDG +Q +L Sbjct: 77 LPQVTDASGTELLLATDPRRAGQLVNVDSSAAGQVLASVDVVFPVLHGPYGEDGTIQGLL 136 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPY 128 EL +PY +G+LASA MDK +K+++++ G+P+ ++ D + + P Sbjct: 137 ELAGVPYVGAGVLASAAGMDKEFTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPV 196 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP + GSS G+ + + +P + + + ++++E + G EL CGV+ D Sbjct: 197 FVKPARAGSSFGVSRVTAWEELPAAIAHAR--QYDPKVIVEAAIVGRELECGVLEFPDGD 254 Query: 189 VT-------------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 FY +E KY + +PAK+ D+ +++ LA A Sbjct: 255 TRASVLGEIRVEGVNRDQTAAGAFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAF 314 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +AI C+G++R DF EIN PG T +S++P M G + LL MV Sbjct: 315 RAIDCQGLARVDFFLAEDG--PLINEINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRT 372 Query: 296 ASCL 299 A Sbjct: 373 ALAR 376 >gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus parasanguinis F0405] Length = 348 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 41/331 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52 +L GG S+EREVS+ S ++ A++ F V + +S + D Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67 Query: 53 --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + F VLHG GEDG +Q LE+L++PY GILAS+++MD Sbjct: 68 NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S +P P + V + + +S P KP GSS+GI + Sbjct: 128 KITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGISKAEN 187 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G++G+ + T V FY Y+ Sbjct: 188 QTELRTALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY T +PA++ ++ K ++ A A +AIG G++R DF + ++F E+N Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PG T S++P + G ++ +L+ +VE Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335 >gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13] Length = 330 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 29/326 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +SL S S ++ + + V R V+ Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVAKHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + G ++++E+++DG E+TCG +V + + + Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 243 TPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559] Length = 324 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 160/323 (49%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A+ MGG SSE ++SL+SG ++ + ++ + D Sbjct: 5 VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S ++ D+ FN++HG GEDG +QA LELL IP T ++AL+ +K + V+ Sbjct: 65 SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ ++ +N+ + + I P +K K GSS GI + + P L Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKALDV 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + D++L+E ++DG E++ GV+ + V ++DF+ YE K + S Sbjct: 185 AF--KEDDEVLVESFLDGTEVSVGVITYNTTITALPITEIVSENDFFDYEAK-YNGQSQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I EVQ++A ++ + +G++R++F+F + + +LE+N PG++ SI Sbjct: 242 ITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIF--HNNEPHFLEVNTCPGLSEASI 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ AA AG S ++L ++ A Sbjct: 300 IPQQAAEAGISLKDLFSNVIAAA 322 >gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 369 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 151/357 (42%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG SSE +S ++ A++ F+V + + L Sbjct: 7 VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPDGAFTLQEDDASALALDADA 66 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 + D+ F +LHG GEDG VQ +LEL Sbjct: 67 LPRVADNGTRVRWPDGTAGRELTVRDADGAERSLGRVDVVFPILHGTQGEDGTVQGMLEL 126 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126 +PY SG+LASAL MDK +K V+ + G+ V P I V+R + + Sbjct: 127 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGL 186 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------G 180 P +KP + GSS+G+ + D + L + D++L+E + G E+ C Sbjct: 187 PAFVKPARAGSSVGVSRVSADAGLDSALEVAF--REDDRVLVESGLVGREVECAILDEGP 244 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ EI V DFY ++ KY + V PA + E++ L+ A +A+ Sbjct: 245 GREPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVD 304 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG++R DF EIN PG TP+S+FP +G ++ +L+ +++ A Sbjct: 305 ARGLARVDFFLTAEG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVA 359 >gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 153/351 (43%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129 +LL+I YT L A++M K +KQ+ GV + ++ P V Sbjct: 123 DLLDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L +S + D+L++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKKSFH--YEDELVVEPYIKGREFACGIIDGTALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D +F LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDA-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349 >gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia JCVIHMP010] Length = 332 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + + +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q EL+ +PY+ SG+L A++ DK + Sbjct: 68 SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G V SILV R ++ I P +KP GSS G+ +K + L Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLNST 212 + + ++IE+++DG+E++ G V K++F+ Y K + Sbjct: 188 AFMESSD--VMIEKFLDGMEISQGAYKTKDKGVVVFPATEVVTKNEFFDYNAK-YNGEVE 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269 + PA++ + K+V +L ++ + GI R D++ + LEIN PGMT Sbjct: 245 EITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 P S P+ AG +E+L +VE+ Sbjct: 305 PTSFIPQQVRAAGLDIKEVLTEIVEN 330 >gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271] gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271] Length = 325 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ + I P +K K GSS G V K + L + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEAQLPMYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 ++ D++LIE ++ G E++ GV+ + + S + Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S+ Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 300 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P+ A AG S EL +E Sbjct: 301 PQQAKVAGISLEELFESEIE 320 >gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC 43184] Length = 326 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S + S L+ + V ID D Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIDK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + + G +++IE ++DG E+TCG A +V + + + Sbjct: 186 AF--SEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYNGQVQEI 243 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I + ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 244 TPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATSFI 302 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 303 PQQVRAAGLEMKDVMTDIIEN 323 >gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22] gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109] gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A] Length = 351 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 142/338 (42%), Gaps = 47/338 (13%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52 GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 2 YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F VLHG GEDG +Q +E + +PY +G+LAS Sbjct: 62 AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSS 138 A +MDK+ +K ++ + G+P P + V R + + P +KP GSS Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI ++ + + L ++ ++ + IE+ D + V Sbjct: 182 VGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVA 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF ++F Sbjct: 242 FYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NELF 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P + G + +L+ +++ A Sbjct: 301 LNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338 >gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 354 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 53/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A++ GG SSE VSL S + + +++ I + + Sbjct: 7 AIIFGGKSSEYPVSLHSAGSLIHKINKERYELIFIGISKDGKWYAYDGDVEGIEHDTWLQ 66 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 ++ D F +LHG GEDG +Q + EL IPY Sbjct: 67 DKHCTPCVLSSSEGCKGFLKLHADGTFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131 G ++SA+ MDK + V+ G+ P + V D++ + P IK Sbjct: 127 VGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189 P GSS GI ++ + + + ++++E ++G E+ C VMG+ L Sbjct: 187 PANAGSSFGIHKMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGCAVMGNKELFAGS 246 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + F+ YE KY ++S PA+I +++ + + +A A+ A+ C+G++R D Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVDMF 306 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P K+ E+N PG T S +P M AG F EL+ +V A Sbjct: 307 VTP-DEKIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDRLVALA 352 >gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104] gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200] gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322] gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98] gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712] gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855] gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248] gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635] gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516] gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137] gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027] gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244] gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012] gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031] gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043] gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342] gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467] Length = 351 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 47/338 (13%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52 GG S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 2 YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + F VLHG GEDG +Q +E + +PY +G+LAS Sbjct: 62 AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSS 138 A +MDK+ +K ++ + G+P P + V R + + P +KP GSS Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + + + L ++ ++ + IE+ D + V Sbjct: 182 VGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVA 241 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF ++F Sbjct: 242 FYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NELF 300 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S++P + G + +L+ +++ A Sbjct: 301 LNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338 >gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026] Length = 348 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 3 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 63 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + + P IKP + GSS+ Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G+ I + + + D+LL E+++ E+ CGV+ + Sbjct: 183 GVHKIVTEADYQAAMSDGF--TYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340 >gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno] Length = 325 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ + I P +K K GSS G V K + L + Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEAQLPMYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 ++ D++LIE ++ G E++ GV+ + + S + Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S+ Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 300 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P+ A AG S EL +E Sbjct: 301 PQQAKVAGISLEELFESEIE 320 >gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929] Length = 376 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 76/345 (22%), Positives = 142/345 (41%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 + ++ GG SSE +VS S A++ + VS Sbjct: 9 IGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKNGYFLDHEASSRVFDGEPED 68 Query: 37 ----------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ + ++ D+ F ++HGN GEDG +Q +L LL PY + Sbjct: 69 EVAKQELAKLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTA 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGS 137 IL SA+S DK +K++V GVP ++ + IKP GS Sbjct: 129 ILGSAMSFDKDITKKIVKLAGVPTTRYEVITPLTAEQYSYDSLSDELGQTLFIKPANQGS 188 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194 S+GI ++ + + + + ++LIE+ ++G E ++ Sbjct: 189 SVGIHKVENAEEYSEGIRDAF--RYDSKVLIEEAIEGPEELEISILGNDHPIASKIGAIR 246 Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 D Y + +P I ++ +++ + ++A+G +G++R D+L Sbjct: 247 VPKDDAFYTYDNKFVDASQVKFDVPVDISEELAQQITEMGLTTYRALGLKGMARIDYLVS 306 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K + E+N PG T +S++P++ A +G S+ EL+ +++ A Sbjct: 307 -KDDKPYMSEVNTLPGFTNISLYPQLFAASGISYSELIDRLIQLA 350 >gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2] gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1] gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3] gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08] Length = 365 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV+ GG+SSE +S S +A++ F VS + + V + Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDTERFDVSGVGISPEGVWVRYEVDEIFALPSTGQ 65 Query: 51 --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78 + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVSDHPLVSVKQMPGGTCIVDTEGNADVVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K +++ GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILAEAGVLVGPYVVVRDHEWREDRDAILKAAAHLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTNPDGLEAAIEAAR--EHDSKVLIEQGIQGREIECSVLDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + P + + + A + + VQ++A A + +GC Sbjct: 244 RASAPGEIVLHDPDGFYDFEAKYLSGGQKASVHARANLDDETRIRVQKVATKAFRVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805] Length = 361 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +LK D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum WAL-14163] Length = 355 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 148/344 (43%), Gaps = 56/344 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 V+ GG SSE VS S + ++ + V + + +L Sbjct: 8 VIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRDGT 67 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 +K D AF VLHG +GEDG +Q + EL ++PY G+ Sbjct: 68 VQAVLSPDATEKSVIVIDGTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKPL 133 LASA+SMDK +K + GV V + + + + P IKP Sbjct: 128 LASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPS 187 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-- 191 GSS G+ + + + L +++ H ++L+E+ + G E+ C V G+ V Sbjct: 188 NAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASG 245 Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + ++FY +E KY + S V+ ++P D + V+R A +A+ G++R DF Sbjct: 246 VGEVLAAAEFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDFF 305 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V + EIN PG T +S++P + AG S EL+ ++ Sbjct: 306 VT-KDGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLI 348 >gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 327 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 32/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 +AVLMGG S E EVSL S L+ + + I + + Sbjct: 4 IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L+L K D AFN +HG GEDG +QA L+ IP T + ASAL+ +K V+ Sbjct: 64 SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + G+P + +N+ S I P +K + GSS G+ ++ I + + Sbjct: 124 NPYGIPRAKAYYLNQGEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDIDDAIEK 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + ++++IE+++ G E++ GV+ V ++DF+ Y+ K S Sbjct: 184 AFEV--DNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEIVSENDFFDYQAK-YQGRSKE 240 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ ++V+ LA + + +G SRS+++ + + + LE+N PG++ SI Sbjct: 241 ITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGLSNASI 298 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A AG + L +E+ Sbjct: 299 LPQQAKAAGITLANLFDNAIEE 320 >gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254] Length = 323 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 10/302 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVL 58 + V+ GG+S+EREVSL +G + L ++V ID + V + L D + L Sbjct: 21 VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114 HG FGEDG +QAIL+ L + Y+ G+++SA+ MDK SK++V+ GV + + Sbjct: 81 HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 140 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + V+KP GGSS+G+ ++ + + L + LIE+ + G Sbjct: 141 VDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELVFGM--DKEALIEEVLHG 198 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 +E++ V+ I D++ YE KY+ + + + P + E+ + A + Sbjct: 199 VEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFAKDS 257 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + C G +R DF+ +++E+N PGMT S+ P+ A GY + + L ++E Sbjct: 258 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDLLIE 316 Query: 295 DA 296 + Sbjct: 317 SS 318 >gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3 str. Ether] gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether] Length = 353 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+E +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + G+S+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c] Length = 374 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 67/359 (18%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------------ 37 A++ GG S+E +S S + +A++ ++V + Sbjct: 11 AIVFGGRSTEHAISCVSARGVLAAVDREKYEVIPVGIAPDGRWLVLPDDPAVLAGVGQEL 70 Query: 38 --------------VDRSVGLV----------------LAHLKPDLAFNVLHGNFGEDGL 67 D + + L L D+ F VLHG +GEDG Sbjct: 71 PQVRPEAGRGVVLPPDPNGASLVAVEAAPGGVPAVAGALGDLDVDVVFPVLHGPYGEDGT 130 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLI 124 +Q +LE+ +PY SG+ ASA +MDK K ++++ G+PV P + + + Sbjct: 131 IQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLLAAAGLPVGPYAVLRAGETLSEAEKRRL 190 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +KP +GGSS+GI + + + + ++L+E + G E+ CGV+ Sbjct: 191 GLPVFVKPARGGSSIGISRVDAWADLDTAIKTAR--ESDPKVLVEAAILGREIECGVLDA 248 Query: 185 ASLDVTEIAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 E ++P FY + KYSS + +PA +P I V+ A A QA Sbjct: 249 LGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDATRLDVPADLPAGIADRVRAAAGAAFQA 308 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + C G++R D +V E+N PG TP S+FP M A +G + L+ +++ A Sbjct: 309 LDCAGLARVDVFLTAA-GEVVLNEVNTMPGFTPSSLFPRMWAASGLDYPALVERLIQLA 366 >gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 322 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-- 41 +A++ GG SSE VSL S + S ++ + + ++ +DR+ Sbjct: 5 IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + I P IKP GGSS G+ +K ++ I + + Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE Y+ G E+TCG +V + + + Sbjct: 185 AFH--ESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEVVTDNEFFDYDAKYNGQVQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++P D + V+ L + +GC GI R D++ KV LEIN PGMT S Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1] Length = 311 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 152/311 (48%), Gaps = 16/311 (5%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVL GG+S EREVSL SG+ A AL G V + DVD ++ L +PD+ LHG Sbjct: 2 AVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHGG 61 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-- 119 GE+G VQ ILELL+IP+ + A + DK K + G+ + + T Sbjct: 62 EGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFREL 121 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P V+KP +GGS+LG+ V++ +P + SS+ + D +L EQ+ Sbjct: 122 GAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAM--VSSFAYADTVLAEQF 179 Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ V+ D V S FY Y +Y+ +T PA++ D+ + + Sbjct: 180 VAGTEVAVSVVHDGDEARALPPVEVEVPSGFYDYTSRYTPGAATFHCPARLSSDVQQTLA 239 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AH+ +G R +SR D + D +V LE+NV PG+T S+ P A G + Sbjct: 240 ETALTAHRLLGMRDVSRMDAIVDG-DGRVHVLEMNVSPGLTDTSLLPTAVAADGSDLATV 298 Query: 289 LLWMVEDASCL 299 +V+ A+ Sbjct: 299 YQALVDRAATR 309 >gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM 16992] Length = 384 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ ++ + ++ ++ P Sbjct: 12 IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVDGEDPRKWNMSEGL 71 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 72 PVVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191 Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + + L + +H ++L+EQ +D E Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + + P + +PA +P + Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D +V EIN PG TP+S++P+ G S Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 371 YTDLITTLIE 380 >gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 369 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 147/356 (41%), Gaps = 63/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S E VS + + ++ F++ I + + H Sbjct: 7 VAVLFGGRSPEHSVSCVTAAGVMNEIDPNAFRLLPIGITPEGKWRVVHDWKSFSFDRDNM 66 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 PD+ F +LHG +GEDG +Q +L L++ Sbjct: 67 PRIEDNQTEVFVSPSKNGSLIERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMD 126 Query: 77 IPYTHSGILASALSMDKMRSKQ--------VVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +P+ G+ +S+ MDK +K V + + T+DS + P Sbjct: 127 VPFVGPGVFSSSAGMDKHFTKMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPA 186 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP + GSS+GI + L + H ++++E +VDG E+ C V+G + Sbjct: 187 FVKPSRAGSSVGISKVSDTSGFKAALDDAF--AHDTKVIVEPFVDGREIECAVLGSVNDR 244 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + P S + ++ ++ + PA + D+ + V+ +A +A C Sbjct: 245 ELKASSPGEIIVSGDHEFYDFDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDC 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P + +V EIN PG TP S +P M +G +++L+ +++ A Sbjct: 305 TGLTRVDTFVRP-NGEVLVNEINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIA 359 >gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334] Length = 372 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 66 Query: 50 ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY N + + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + KV EIN PG T +S++P+M +G LL ++E A R Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354 >gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS 21A-A] Length = 332 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ S + S + + + +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q EL+ +PY+ SG+L AL+ DK + Sbjct: 68 SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SILV R + + P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNST 212 + ++++IE+Y+ G+E++ G + V K++F+ Y K + Sbjct: 188 AFM--ESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEVVTKNEFFDYNAK-YNGEVQ 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA++ + ++V L + + GI R D++ D V LEIN PGMT Sbjct: 245 EITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPGMT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 P S P+ AG +++L +VE+ Sbjct: 305 PTSFIPQQVRAAGLEMKDVLTDIVEN 330 >gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName: Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine synthetase A gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440] Length = 352 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + +KP GSS+G Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDF 199 V + ++ + + ++L+E V G E+ CGV+ + + K + Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 200 YSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++Y + +S +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEE-G 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300 ++ EIN PG T S++P+M +GY +L+ +VE AS R Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351 >gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868] Length = 327 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 33/327 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 6 IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN +HG GE+G++QA + + YT SAL+ +K + V Sbjct: 66 SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125 Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 ++ G+P S + + + P +KP + GSSLGI +K+ L Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ D++L+E ++DG+E++ G+ + +P+++F+ YE K S Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQ 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA++ V+ +A A+ ++G +G SRS+++ ++ + LE+N PG +P S Sbjct: 243 EITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPAS 300 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299 I P+ A G S ++L VE A Sbjct: 301 ILPQQARIYGISIKDLCGNEVEKALAK 327 >gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735] gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302] gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735] Length = 331 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 139/324 (42%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + K D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SI + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++++IE Y+DG+E++ G+ +V A + + + Sbjct: 188 AFM--ESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEVVTKNEFFDYDAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271 PA++ + +V + + GI R D++ D V LEIN PGMT Sbjct: 246 TPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49] Length = 327 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AVLMGG SSE +SL+SG AL+ + V I + D Sbjct: 8 IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + PD FN +HG GEDG + A ELL IP T SG +ALS +K V+ Sbjct: 68 SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127 Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV S N+ + P +KP + GSS GI + ++ L Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 ++ +++IE + G E++ G + + S + Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEIVSENDFFDYEAKYEGKSQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++V+ + + +G+ RS+F+ +++EIN PG++ SI Sbjct: 246 TPARISESDTQKVKAETKRIYNLLKMKGVCRSEFII--QDGVPYFIEINTTPGLSSESII 303 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P+ AG E +++ Sbjct: 304 PKQVKDAGMDLGEFFGELID 323 >gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287] Length = 325 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++MGG S+E VSL S A L + + +DR + + Sbjct: 5 IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64 Query: 48 -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 65 SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ + I P +K K GSS G V K + + L + Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEVQLPMYI 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 ++ D++LIE ++ G E++ GV+ + + S + Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S+ Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEASLL 300 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P+ A AG S EL +E Sbjct: 301 PQQAKVAGISLEELFESEIE 320 >gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3] gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4] Length = 365 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ +A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7] Length = 330 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 29/326 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE +SL S S ++ + + V R V+ Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + G ++++E+++DG E+TCG +V + + + Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 243 TPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083] Length = 346 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 45/338 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S E VS+ S + A L+ ++ + + + L Sbjct: 6 VGIIFGGCSEEHPVSVKSAREVAQNLDVEKYEPFFVGITKGGDWRLCNGPDTDWERGDHR 65 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ VLHG GEDG +Q +LEL IPY I Sbjct: 66 PAVLSPDRGDRGLLVLDQGRYETITLDVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQ 125 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 +SAL MDK + V SS G+ V IS P +KP + G S G+ + Sbjct: 126 SSALCMDKSLAYLVASSAGIRTPSHWTVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVS 185 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + ++LIE+ V G E+ C V+G+ +T + + + Sbjct: 186 RREELLSAVETAR--QYDSKVLIEEVVVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRI 243 Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + ++PA IP + V A ++A+GCRG++R D +V Sbjct: 244 HQEDQPETGSDNSVAIVPADIPEESRSLVTEQAKALYRALGCRGLARVDMFLRE-DGEVV 302 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PGMT S +P M A A E++ +V A Sbjct: 303 LNEVNTFPGMTSYSRYPRMMAAADLPLTEVIDRLVSLA 340 >gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 334 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 146/327 (44%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG + E EVS S S L+ + V I + + Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + Q +S PY +KP GGSS+G+ +K ++ + + Sbjct: 125 AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAEAI 184 Query: 155 LQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209 ++ + G Q+++E++V G E + G+ + + +F+ YE KY+ Sbjct: 185 DKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTREFFDYEAKYTPG 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + PA + + + L + + C+G+ R DF + + K +++EIN PG T Sbjct: 245 LTEEITPADLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIPGQT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG + ++E A Sbjct: 305 AQSFIPQQVRAAGMKETDFYGELIEVA 331 >gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23] Length = 321 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 35/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 ++ GG S E EVSL+S + + F + + +L Sbjct: 7 LIAGGKSPEHEVSLASAEGVLKHMP---FPTELAVIAKDGAWLLGEEALRALEAKVAPKG 63 Query: 50 -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + + F +LHG GEDG +Q LE+L PY +G+ SAL MDK SK+ Sbjct: 64 EHPFPPPLDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKR 123 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ G+PV P + + R PP+ +KP GSS+GI +++ + L ++ Sbjct: 124 VLAQAGIPVVPWVALYRGETP-LVPFEPPFFVKPANTGSSIGISRVERYADLEEALEEAF 182 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 H + ++E+ + G+ E+ ++ FY YE KY+ + ++ Sbjct: 183 --RHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 240 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ +A A++ +G RG++R DF +++ E+N PG TP S+FP Sbjct: 241 PAPLDPGTEETVQEMALKAYKVLGLRGMARVDFFLAE--GELYLNEVNTIPGFTPTSMFP 298 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + G ++ ELL +VE A Sbjct: 299 RLFLAKGLTYPELLRRLVELA 319 >gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286] Length = 327 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A++ GG SSE VS S S L+ + + ++ + R V A Sbjct: 5 IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64 Query: 48 --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 ++K D AF ++HG GEDG +Q ++L IPY+ G++AS+L+M+K Sbjct: 65 FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124 Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ V S+ +N+ T + P +KP GGSS +K + + + Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKSIEQLQKAID 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTH 213 + +++IE ++ G E+TCG +V + + Sbjct: 185 IAFGETP--EVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTPNEFFNYEAKYEGQVEE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+IP ++ E+QRL + +G +GI R DF+ + LE+N PGMT S Sbjct: 243 ITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFII--SDNMPYLLEVNTVPGMTQTSF 300 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A AG + ++L ++E+ Sbjct: 301 IPQQVAAAGLNITDVLTEIIEN 322 >gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 343 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 102/337 (30%), Positives = 154/337 (45%), Gaps = 46/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45 + VL GG S ER+VSL SG A++L +G V+ DV D + Sbjct: 7 ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66 Query: 46 LAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79 + P D+ F LHG GEDG +QA L + IPY Sbjct: 67 VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T S A ++MDK SK + + G+P L+ + I P V+KP GSS+ Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDST--DGIPLPCVVKPCSCGSSV 184 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 G+ ++ +++ L +++ + +++L E + G E + GV+ +L PK F Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAI-EIRPKDGF 241 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 Y YE KY S + + PA +P + LA H+A+G SR DF+ + + K Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N PGMTP+S+ P+ AA AG + L L + + A Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 364 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 149/349 (42%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141 L SA+SMDK +K+++ S G+ V P +N + + +KP GSS+G+ Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMNFMRPWEELVECLGSSTLFVKPANSGSSIGV 185 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----- 196 + ++ ++L+E + G E+ CGV+ + + Sbjct: 186 SKVSNALEYAEAFAIAACQ--DAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKEG 243 Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +Y Y+ KY S + +P+ + DI + +Q L+ A + + +G +R DF Sbjct: 244 QAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-DG 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300 + E+N PG T S++P+M +GY +L+ +VE AS R Sbjct: 303 AIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYALSSASKDR 351 >gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 93/310 (30%), Positives = 146/310 (47%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ A AL A DVD ++ L PD LHG Sbjct: 9 VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++++L+L+ IPY A+ + DK +K ++ G+P I + R T Sbjct: 69 GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS LG+ V++ + +P + + +GD L+E + Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAM--IGCFAYGDVALVEAFA 186 Query: 173 DGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ++ GV+ P D Y + +Y+ ST +PA++ + ++V Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIEPSGDAYDFAARYNPGASTWHVPARLAPRVSEDVAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A + +G R +SR D + P + LE V PGMT S+ P AG+ EL+ Sbjct: 247 VATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGELM 305 Query: 290 LWMVEDASCL 299 +V+ A Sbjct: 306 AGLVDRAIAR 315 >gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111] gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493] gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493] gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 373 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 67 Query: 50 ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 68 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + + +K Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + D+L++E + G E+ C V+G+ + + Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 245 Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY N + + + K++Q++A A + + C G++R DF Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + KV EIN PG T +S++P+M +G LL ++E A R Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 355 >gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1] gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2] gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1] gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2] gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1] Length = 365 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ +A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAVKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037] Length = 361 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 64/356 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + VL GG SSE +S ++ A++ F+V + + R VL PD Sbjct: 6 VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65 Query: 53 -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75 + +LHG FGEDG VQ +LELL Sbjct: 66 LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPP 127 IPY G+L SA+ M+K +KQV+ + VPV P + + P Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP + GSS+G+ + + + + L + +L+E+ + G EL CGV+ Sbjct: 186 VFVKPNEAGSSVGVTKVSRWEDLDAALDTAF--AEDGLVLVEKAIVGRELECGVLPGRDG 243 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++V + Y PA++ E+QR+A A +AIG Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G++R DF + F E+N PG TP+S+FP +G S+ +L+ +++ A Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLISDLLDAA 357 >gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40] Length = 361 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +LK D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71] Length = 315 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 6/285 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S ER+VSL+S + L D G++ +D D+AFN+ HG Sbjct: 12 IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALD-TGEPRWWERLEDADIAFNIQHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG+ Q +L + + T S +L SAL+MDK+RSKQ+ S G+P +V+ T + Sbjct: 71 VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAA 130 Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L IKP GSSLG+ + ++ +G+ +L E+++DG E T Sbjct: 131 ALLSEWGAAFIKPSAEGSSLGMSRVDSVDGFKAA--CEAAAVYGEGILAEEFIDGPEYTV 188 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++GD +L I + Y YE KY ++ + +P + + + RLA A A+G Sbjct: 189 AILGDRALPPIRIEASREF-YDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAALG 247 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 C R D + + + LE+N PGMT S+ P A AG S Sbjct: 248 CSIWGRVDLMRNRR-GEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 426 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S AL+ + VS + L+ Sbjct: 55 IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114 Query: 46 ---------------------LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L +K DL F V+HGN GEDG VQ + +LL+ PY S Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASA++ DK +K++++ G+ P + + + I +KP K GS Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + +++ + + + + AV Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDYKILVEQGIDHPQEVEISILGNEHPVASKLGAVRVP 294 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + S+ + LP K+P + +E+ +A A++ +G +G++R DFL D Sbjct: 295 EGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD-S 353 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G + +L+ +++ Sbjct: 354 NNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQL 395 >gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 384 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ ++ + ++ ++ P Sbjct: 12 IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVGGEDPRKWNMSEGL 71 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 72 PMVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191 Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + + L + +H ++L+EQ +D E Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + + P + +PA +P + Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D +V EIN PG TP+S++P+ G S Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 371 YTDLITTLIE 380 >gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2] Length = 365 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGTDEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes SK187] gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1] gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1] gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2] gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1] gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1] gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4] gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1] gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3] gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1] gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1] gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1] gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1] gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1] gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2] gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2] gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1] gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2] gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3] gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2] gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1] gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2] gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1] Length = 365 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 6 VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65 Query: 46 ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78 D + F VLHG FGEDG +Q +LE+ + Sbjct: 66 LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130 Y G+ ASA MDK +K ++S GV V P ++V + P + Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243 Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 +VP + + + A + + VQ++A A Q +GC Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D L V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM 17244] Length = 351 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 146/340 (42%), Gaps = 49/340 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 VL GG S E +VSL S + +++ + + I V RS L Sbjct: 14 VLFGGNSPEYDVSLKSAYSVINSINKDLYDIKLIGVSRSGDFYLYEGDIEKIRNDTWHLD 73 Query: 49 ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + D AF +LHG GEDG +Q +LEL IP Sbjct: 74 KNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQGLLELGGIPIIG 133 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSS 138 G+L+SAL MDK R+ ++V S G+ V S+ + + P +KPLK GSS Sbjct: 134 CGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIEYLGFPIFVKPLKAGSS 193 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196 GI ++ + + + ++ + D++++E+ +DG E+ C V + + Sbjct: 194 FGITKVEDKKDLFKAVDKAF--EYDDKVVLEENIDGFEVGCAVLGNEKPIIGEVDEIELS 251 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 F+ Y KY+ S +PA+I + K ++ A ++ + C+ +R D R Sbjct: 252 KGFFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKILDCKDFARIDMFIT-KDRD 310 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T S FP M G F E++ ++ A Sbjct: 311 IVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIVNKIISLA 350 >gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270] gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 348 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40 +L GG S+EREVS+ S ++ A+ F V + + Sbjct: 7 VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66 Query: 41 --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + +KP + F VLHG GEDG +Q LE+L +PY + +++S+++M Sbjct: 67 TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+P + L ++ P +KP GSS+GI + Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203 + + + + ++LIEQ V E+ G++G+ + T + DFY Y+ Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + I E++ A +A +A+G G+SR DF +V+ E+N Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEVLVTLA 336 >gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14] gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14] Length = 331 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + V +D+ D Sbjct: 8 IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +K D A+ +HG GE+G +Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+L+ R + I P +KP GSS G+ +K + L Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + + ++E ++DGIE++ G+ A V A + + + Sbjct: 188 AFMEC--SEAMVEGFMDGIEISQGIYKTADKTVVFPATEVVTNNEFFDYNAKYNGQVKEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271 PA++ + ++V + + GI R D++ + K+ LEIN PGMT Sbjct: 246 TPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B] Length = 330 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE +SL S S ++ + + V R V+ Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + G ++++E ++DG E+TCG +V + + + Sbjct: 185 AF--GEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 243 TPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S] Length = 361 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ S L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIEEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366] gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366] Length = 328 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 30/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A+L GG + E VS+ S A L+ F V +I +VDR+ Sbjct: 5 IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + +K + F +HG+ GEDG +Q ++L IPYT L SA++M+K +K +V Sbjct: 65 SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124 Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + + PY +KP GGSS+G+ + + + Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNHPDDLQAAID 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ Q+LIE+++ G E T + G+ ++ +F+ +E KY+ +T Sbjct: 185 RAF--KEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAKEFFDFEAKYTPGVAT 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 PA I + + V ++ + + CRG+ R DF+ + +++EIN PG T S Sbjct: 243 ETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQTATS 302 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A AG + ++ + Sbjct: 303 FIPQQVAAAGMKLNDFYTKLIRE 325 >gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] Length = 358 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 150/352 (42%), Gaps = 65/352 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +R DF EIN PG T +S++P M A +G + LL M+E Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIET 349 >gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv] gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra] gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl) From Mycobacterium Tuberculosis gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium tuberculosis H37Rv] gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra] gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu001] gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu010] gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu011] gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis SUMu012] Length = 373 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 91/352 (25%), Positives = 150/352 (42%), Gaps = 65/352 (18%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 17 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 77 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + ++ H ++++E + G EL CGV+ Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +R DF EIN PG T +S++P M A +G + LL M+E Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIET 364 >gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204] gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204] Length = 401 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 85/366 (23%), Positives = 141/366 (38%), Gaps = 74/366 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLK--- 50 +AV GG S E EVS+ S AL+ + V + V + + +++ K Sbjct: 5 IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+A V+HG GEDG +Q E+L Sbjct: 65 HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127 ++PY + +A+ DK+ K V++ +P+ V MD+ H + P Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--------DQLLIEQYVDGIELTC 179 +IKP + GSS+GI + D+ ++ ++ I V G +C Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLACFDEARQYDEKIITEKVVKPMREINCSVVGDSYSC 244 Query: 180 GVMGDASLDVTEIAVPKSDFYSY---------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + S Y E ++ ++PA + + + +Q+L Sbjct: 245 VASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQQL 304 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + +G G+ R DFL D ++KV+ EIN PG S+ + AG SF EL+ Sbjct: 305 AKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPG----SLAFYLWKAAGVSFSELMD 360 Query: 291 WMVEDA 296 +VE A Sbjct: 361 KLVELA 366 >gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548] Length = 345 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 46/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG SSE ++SL S + L + +K+ + +++ A K D Sbjct: 6 ILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLVKE 65 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + +HG +GEDG +QA+L+++ I Y +G+L+SA Sbjct: 66 VKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ S + + + N+ I P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVGVS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200 + + + + ++L+E+ ++G E + + + F Sbjct: 186 KVTNKNELLAA--GDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHTFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY S ++ LP + + +E Q A++A GC G +R D + Sbjct: 244 DYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFL-GKDNNFYVN 302 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + SF E+L +++D Sbjct: 303 EINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKD 338 >gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN] gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN] gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 361 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 160/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLK--------- 50 + ++ GG SSE EVS+ SG +A++ + V I + + L K Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV + + RF + ++ + +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI +K + L ++ + D++L+E+ +DG E+ V+G+ + V+ + + Sbjct: 187 VGISHVKSEADYLPALAEAF--KYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + + +PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG + +L+ ++E A Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346 >gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b] Length = 330 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S ERE SL+SGK +ALE+AG KV +D + L +PD+ ++ LHG Sbjct: 5 VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---------------- 104 GEDG +Q++LE L+IP+ S + +K +++ Sbjct: 65 KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124 Query: 105 ----VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + + P +KP GGS++G+ + + + + Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAI--LDAL 182 Query: 161 NHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + + ++IEQ+V+G+E+ DA VPK F+ E + ++ P Sbjct: 183 SFDEAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEIVPKQGFFGTEARMEPGAVQYIAPV 242 Query: 218 KI---------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + I E++R A ++A R ++R D ++D +VF E+NV PGM Sbjct: 243 RPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPGM 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 S+FP AG S +L +V Sbjct: 301 AERSLFPAACEAAGLSLSSVLNELV 325 >gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19] gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3] Length = 330 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++ GG SSE +SL S S ++ + + V R V+ Sbjct: 5 IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GEDG +Q +++ +PY+ G+L SAL+ +K + Sbjct: 65 SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + G ++++E ++DG E+TCG +V + + + Sbjct: 185 AF--GEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + +QR + +G +G+ R D++ P + LEIN PGMT S Sbjct: 243 TPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ AG ++++ ++ED R Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327 >gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205] Length = 331 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SI + I P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++++IE ++DG E++ G+ A V A + + + Sbjct: 188 AFM--ESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEVVTTNEFFDYDAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271 PA++ + +EV + + + GI R D++ KV LEIN PGMT Sbjct: 246 TPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 334 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ S + S + + V +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L + K D A+ +HG GE+G++Q ELL IPY+ SG+L A++ DK + Sbjct: 68 SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 GV V + I P +KP GSS GI +K + L Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 + D+++IE+Y+ G E++ G + V A + + Sbjct: 188 RVAFM--ESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEVVTSNEFFDYDAKYNGQVE 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269 + PA++ + + V + + C GI R D++ + LEIN PGMT Sbjct: 246 EITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTPGMT 305 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L ++E+ Sbjct: 306 ATSFIPQQVRAAGLDIKDVLTDIIEN 331 >gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 334 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 146/327 (44%), Gaps = 31/327 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A+L GG + E EVS S S L+ + V I + + Sbjct: 5 IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + L ++ DLAF ++HG GEDG +Q ++L+IPYT L S+L+M+K +K V+ Sbjct: 65 TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124 Query: 101 SSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + Q +S PY +KP GGSS+G+ +K ++ + + Sbjct: 125 AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAEAI 184 Query: 155 LQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209 ++ + G Q+++E++V G E + G+ + + +F+ YE KY+ Sbjct: 185 DKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTREFFDYEAKYTPG 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + PA + + + L + + C+G+ R DF + + K +++EIN PG T Sbjct: 245 LTEEITPADLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIPGQT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG + ++E A Sbjct: 305 AQSFIPQQVRAAGMKETDFYGDLIEVA 331 >gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii DSM 18315] Length = 326 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40 +A++ GG SSE +SL S + S L+ + V ID D Sbjct: 6 IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GEDG +Q +++ +PY+ G+ SAL+ +K + Sbjct: 66 SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125 Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + SI + + + + P +KP GGSS G+ +K+ +I + + Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIAK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + + G +++IE ++DG E+TCG A +V + + + Sbjct: 186 AF--SEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYNGQVQEI 243 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ ++VQR + +G +G+ R D++ P + LE+N PGMT S Sbjct: 244 TPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATSFI 302 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 303 PQQVRAAGLEMKDVMTDIIEN 323 >gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614] Length = 358 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S+E EVS+ S AL+ + + I V +++ + Sbjct: 10 VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69 Query: 52 ----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D F VLHG GEDG VQ + E+ +P G Sbjct: 70 TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSL 139 I SA ++DK +K+++ G+P SI ++ + + P IKP + GSS+ Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEI 192 G+ + + + H ++LL E++V G E+ V+ + Sbjct: 190 GVSKVMTAADFKAAVQEGF--KHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + +PA++P ++ ++ LA A +A+GC G++R DF Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDFFLT- 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V E+N PG T +S++ + A +G ++ E++ ++ Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347 >gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39] Length = 335 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 30/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43 +A+L GG + E +S+ S A L+ F+V +I +VDR+ Sbjct: 12 IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D F +HG+ GEDG +Q ++L +PYT L S+++M+K +K +V Sbjct: 72 SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131 Query: 101 SSCGVPV-----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + ++ + PY +KP GGSS+G+ + + + Sbjct: 132 NGIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMSKVTHAADLQEAIE 191 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212 ++ DQ+LIE+++ G E T GV+ +F+ +E KY+ +T Sbjct: 192 KAF--KEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAKEFFDFEAKYTPGVAT 249 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 PA I + V ++A + + C G+ R DF+ +++EIN PG T S Sbjct: 250 ETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQTATS 309 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 P+ A G + ++ + Sbjct: 310 FIPQQVAAMGMKLNDFYTKLIRE 332 >gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA [Lactobacillus jensenii 269-3] gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153] gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US] gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1] Length = 361 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 159/342 (46%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLK--------- 50 + ++ GG SSE EVS+ SG +A++ + V I + + L K Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66 Query: 51 ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q +L+ P+ +LA+A+ Sbjct: 67 IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138 +MDK +K + GVPV + + RF + ++ + +KP GSS Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI +K + L ++ + D++L+E+ + G E+ V+G+ + V+ + + Sbjct: 187 VGITHVKSESDYLPALAEAF--KYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + + +PA +P +I ++V+ A ++A C G++R D + Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG + +L+ ++E A Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346 >gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 329 Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 33/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+MGG S E VSL SG+ +L+ + V ++ V + L Sbjct: 8 VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 L+ D+ FN++HG GE+G++QA + + YT G SAL+ +K + V Sbjct: 68 SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 +S G+P SI + + + I P +KP + GSSLGI +K+ + Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKSELIAA-- 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNST 212 ++ D++LIE +++G+E++ GV+ + VP ++F+ YE K S Sbjct: 186 TEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEIVPTNEFFDYEAK-YEGASE 244 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + PA+I + K V+ +A A+ ++G G SRS+++ + + LE+N PG +P S Sbjct: 245 EITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYIL--MDGIPYMLEMNTNPGFSPAS 302 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I P+ A + G S +L VE A Sbjct: 303 ILPQQAKHYGISIMDLCGNEVEKA 326 >gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827] Length = 314 Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 16/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ +AL AG V + D D + L +PD LHG Sbjct: 6 VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GE+G VQ ILEL +P+ + A + DK +K +S G+ ++ T Sbjct: 66 GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125 Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V++ +P + +GD +L E+ Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAM--VGCLAYGDTVLAER 183 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +V+G+E+ V+ VP+S Y Y +Y++ + PA++ K V Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEIVPESGVYDYTSRYTAGLTDFHAPARLDEATAKAV 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA AH+ +G R +SR+D + +P V +LE+NV PG+T S P AG S E Sbjct: 244 GELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLGE 302 Query: 288 LLLWMVEDA 296 + ++E A Sbjct: 303 IYAALIERA 311 >gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 349 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 54/349 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG SSE E+S+ S + ++ +++ + + + + Sbjct: 5 VIIFGGRSSEHEISVISATNVSKQVDTDKYELILVGITKEGKWLKVDSISSMEDGSWLNS 64 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D+ F VLHG FGEDG VQ +LEL +IPY G Sbjct: 65 KTSAYILPDATKKCIMVETGGEYKEVHVDVVFPVLHGLFGEDGTVQGLLELAKIPYVGCG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPLK 134 +LASA+ MDK+ +K VV G+ ++ + P IKP Sbjct: 125 VLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIEKIEGRFDYPVFIKPSN 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191 GSS G+ + + +L++ H ++L+E+ + G E+ CGV+G Sbjct: 185 AGSSRGVSKALDREELKKGILEAL--KHDRKVLVEETIVGHEVECGVLGRPGDVTASGVG 242 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + FY Y+ KY + T + + +++ A A+ G+SR DF Sbjct: 243 EIKSAATFYDYDAKYKLDSLTLLDSKLPDG-VREKLPEYAKKIFTALDGFGLSRVDFF-A 300 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++ + EIN PG T +S++P + AG ++L+ ++E A R Sbjct: 301 REDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIELAFERR 349 >gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 72a] gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a] gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a] gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a] Length = 361 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 99/328 (30%), Positives = 154/328 (46%), Gaps = 41/328 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 ++VL GG S ER+VS++S AL G +V +D A + Sbjct: 3 ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62 Query: 52 ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 DL F LHG GEDG +QA+LEL IP+T SG Sbjct: 63 PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L SAL+MDK +K ++ + GV ++ + + P V+KP GS++G+ V+ Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWLID-PEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + +P L ++ +++E++V G ELT GV+ +L V EI VP + ++Y Sbjct: 182 RAAADLPAALELAARH---GTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY + PA +P ++ +E + A AH+ + G SRSDF D ++ +E N Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLDDA-GILWIIEANS 297 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG+T S+ P+ AA G + EL + Sbjct: 298 LPGLTATSLLPQSAAAVGIGYAELCERI 325 >gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31] gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31] Length = 356 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 62 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + ++ P ++KP GSS+G Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 182 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFL ++ + RG++R DF + S Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341 >gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110] gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName: Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine synthetase B gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110] Length = 376 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 154/351 (43%), Gaps = 59/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E EVS +S AL + V I + R Sbjct: 17 VGLLFGGRSAEHEVSRASAANILRALNSDRYDVYLIGISRDGRWFACDSGNGAGTGSTAL 76 Query: 46 -LAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ P D+AF +LHG GEDG VQ LEL ++ Sbjct: 77 TISDEAPEIGLVPGGRGRLVHCDGPTGSDAGSIDVAFPILHGPNGEDGTVQGALELADVS 136 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133 + S + SA++MDK SK+++ G+PV P + + L +P +KP Sbjct: 137 FVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFLTTTASSRIEYAAAVAALGTPDLFVKPA 196 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-- 190 GSS+G+ + ++ + ++ + ++L+EQ ++G E+ C V+ +++ D+ Sbjct: 197 NLGSSVGVSRARSEEEF--AASCALAFRYDRKILVEQALNGAREIECSVLEESTGDIRAS 254 Query: 191 ----EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + FYSY+ KY + +PA +PL + +Q LA + C G++R Sbjct: 255 GLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQARRLQELAVEVFNVLCCEGMAR 314 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF +VF E N PG T S++P++ +G S +L+ ++ A Sbjct: 315 VDFFV--QGDEVFVNEANTLPGFTSSSMYPKLWEASGLSQTDLMDKLIAHA 363 >gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 352 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 52/349 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG SSE V+L S +AL G +V + +DR Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65 Query: 46 --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L ++P DL F LHG +GEDG +Q + + +P SG+ Sbjct: 66 APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141 L SA++MDK +K++V S G+ V P + +N + + +KP GSS+G Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDF 199 V + ++ + + ++L+E V G E+ CGV+ + + K + Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243 Query: 200 YSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 ++Y + +S +P+ +P DI +Q L+ A + + +G +R DF Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEE-G 302 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300 ++ EIN PG T S++P+M +GY +L+ +VE AS R Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351 >gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 356 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 56/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG SSE VS S A L+ ++V I + R + Sbjct: 9 VAVVYGGRSSEHSVSCISAGAIMEHLDPEKYEVVPIGITREGTWTQGNRAGLNIVDGRLP 68 Query: 50 ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 + D+ VLHG +GEDG VQ + EL IPY Sbjct: 69 EVELHDELALSLNPATRGRIHNVTRHEHYTEVDVIVPVLHGPYGEDGTVQGLFELSGIPY 128 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGG 136 +G+LASA+ MDK +K+++ + G+PV P ++ + + P +KP +GG Sbjct: 129 VGAGVLASAVGMDKEFTKKLLVAEGLPVAPQEVLTGEATLDDLQKERLGLPVFVKPARGG 188 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194 SS+G+ + + + L + D++LIE + G E+ GV+ + Sbjct: 189 SSIGVSKVSAWEDLEAALTLAY--ESDDKVLIEPEISGAEVEVGVLERPDGSLQASVPAK 246 Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + FY ++ KY + +PA + ++ E+++ A A +A+G G+SR DF Sbjct: 247 ILGTTESEEGFYDFDAKYIDEGVSAAIPAPLSEELTAELRQRAIEAFRALGASGLSRVDF 306 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S E+N PG TP+S++P++ A G + ELL +++ A Sbjct: 307 FVSDYS--YCINEVNTFPGFTPISMYPQVFAAVGVGYAELLDTLIQTALAR 355 >gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205] Length = 327 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 16/310 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ AL G + D D ++ L PD LHG Sbjct: 19 VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG ++ +L+L +PY +S L+ DK +K V+ G+P + + Sbjct: 79 GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138 Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P ++KP +GGS LG V++ ++P + + + L+E+Y+ Sbjct: 139 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDGPALPAAM--VGCFAYDSTALVERYL 196 Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ++ V+ VP++ Y Y +Y++ +T PA++ ++ + V Sbjct: 197 PGTDVAVSVIDLGEGPQALPAVEIVPRNGVYDYAARYTAGRTTWHTPARLDTEVAEAVAT 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH A+G R +SR D + D + L +NV PGMT S+ P A A F ++ Sbjct: 257 VAVAAHTALGLRDLSRVDLIVDA-DHQPHVLGVNVAPGMTETSLLPLAAQAASLDFGRMI 315 Query: 290 LWMVEDASCL 299 +V A Sbjct: 316 GTLVSRAVAR 325 >gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1] Length = 361 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--RYDLAIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia valaisiana VS116] Length = 361 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S L D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPINID 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ + ++ P +IKP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I V + I + S + ++IE++++ E+ C E+ V Sbjct: 187 INVAYSENQIESFI--KESLKYDLTIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFL ++ +G RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346 >gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi ZS7] gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26] Length = 361 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a] gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1] Length = 361 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM 18228] Length = 337 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VS+ S + S ++ + + +++ D Sbjct: 16 IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S +KPD A+ +HG GE+G++Q EL+ +PY+ +L SAL+ K Q + Sbjct: 76 SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135 Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+LV + I P IKP GSS G+ +K + I L Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPALEA 195 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214 + D ++IE ++DGIEL G V + T + Sbjct: 196 AF--KESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEVVSKNEFFDFNAKYKGEVTEI 253 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ + VQ+L + + C+GI R D++ K+ LEIN PGMT S Sbjct: 254 TPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATSFI 312 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 313 PQQVRAAGLDIKDVMTDIIED 333 >gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 370 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 62/360 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51 +A+ GG+SSE EVS S A AL +A ++V + + ++ + H P Sbjct: 9 VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ V+HG GEDG +Q + E+ Sbjct: 69 GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISP 126 IPY G+LASA+ MDK + V+ + GVP C R ++ + + Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+G + K LD + D++++E+++DG E+ C +G+ Sbjct: 189 PIFVKPANAGSSVG--ISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246 Query: 187 LDVTEIAVPK------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++FY+Y+ KY + S V+PA + + EV+ A A+ A+GC Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+SR DF + + +V E+N PG T +S++P++ + G +F +L+ +++ A R Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLAVRRR 366 >gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212] gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 373 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 ++VL GG S+E E+S+ S K + L+ A + +S I +D L Sbjct: 8 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAYSPDH 67 Query: 50 ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 68 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + + +K Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + D L++E + G E+ C V+G+ + + Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDHLMVEPRIRGREIECAVLGNGAPKASL 245 Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY +T + + K++Q++A A + + C G++R DF Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARVDF 305 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + KV EIN PG T +S++P+M +G LL ++E A R Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 355 >gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 322 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 28/321 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQID--------------VDRSVGL 44 +A++ GG SSE EVSL S S + D + V+ I +D++ Sbjct: 4 IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63 Query: 45 VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 +A K D A+ +HG GE+G++Q +L+ +P++ +LASAL+ +K + Sbjct: 64 FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123 Query: 102 SCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + V S+ + P +KP GGSS +K + + ++ Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSKDMLQQAIEEA 183 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVL 215 + D++++E +VDG E+TCG+ V + + S + Sbjct: 184 FAEA--DEVIVESFVDGTEVTCGMYKTKGKTVILPLTEVVSKNEFFDYNAKYNNQSDEIT 241 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+I + + +++ ++ I +GI R+D++ +P S ++ LE+N PGMTP S P Sbjct: 242 PARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEP-SGRIVLLEVNTTPGMTPQSFLP 300 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + AG E++ ++ED+ Sbjct: 301 QQIRAAGMDIAEVMRDIIEDS 321 >gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 337 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 30/320 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +A++MGG S E VSL S + A+ L + + +DR + + Sbjct: 16 IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + FN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 76 SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N+ S I P +KP K GSSLG + ++ ++ + + Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLGASKVNEEAALKEAIDK 195 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + + D++LIE ++ G E++ GV+ + + + S + Sbjct: 196 AFAV--DDEILIESFLKGTEISIGVIKYRGVIKVLPMTEIVSENDFFDYDAKYNGKSQEI 253 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ ++ LA ++ + G SRS+F+ + + LE+N PG++ S+ Sbjct: 254 TPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 311 Query: 275 PEMAAYAGYSFRELLLWMVE 294 P+ A AG S +L +E Sbjct: 312 PQQAKVAGISLADLFESEIE 331 >gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14] Length = 350 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 152/351 (43%), Gaps = 55/351 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + VL GG+S+ER+VSLSS L + G +DV Sbjct: 3 IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62 Query: 39 --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72 + + +PD + F LHG GE+G +QA Sbjct: 63 EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129 +LL I YT L A++M K +KQ+ GV + ++ P V Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GGSS+G+ ++ D+ L +S + D+L++E Y+ G E CG++ +L Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKKSF--RYEDELVVEPYIKGREFACGIIDGTALPP 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +PK+ F+ Y KY ++ V PA IP ++ + ++ L A A+ SR+DFL Sbjct: 241 I-EIIPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D +F LE+N PGMT S+ P+ A G + +L +++ + R Sbjct: 300 LDAEGN-LFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349 >gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2] Length = 371 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 64/357 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG SSE VS + A+ D ++V I + ++ + Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 50 ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75 D+ F +LHG +GEDG +Q + EL Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127 + + SG+ ASA SMDK +K +++ G+P CP LV ++ + P Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP + GSS+G+ ++ + + L + H ++++E V G E+ C V+G Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQALRSAF--EHDSKVIVEPQVVGREIECAVLGSVHD 247 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ P S E + + + PA++ +Q L+ + Sbjct: 248 REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFD 307 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G+SR D +V EIN PG TP S +P M + +G + L+ ++ A Sbjct: 308 CTGLSRVDTFVTDA-GEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363 >gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237] gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237] Length = 326 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 30/326 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG + F + I + D Sbjct: 5 IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + + D FN +HG+ GEDGL+Q+ ELL IP T SAL+ +K V+ Sbjct: 65 SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ S +N + I P +K K GSS GI+ + K + + + Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAIEN 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 + D+++IE ++DG E++ GV+ + + + S + Sbjct: 185 AY--KEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEIVSENDFFDYEAKYAGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++V LA A+ + +G SRS+F+F + + F LE+N PG+T SI Sbjct: 243 TPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEESIL 300 Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300 P+ A AG S EL + +A ++ Sbjct: 301 PQQAKVAGISLPELFENAINEALTVK 326 >gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi] gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi] Length = 361 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197 I V + I + + +LIE++++ E+ C ++G+ E+ V Sbjct: 187 INVAYSENQIE--FFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA++ + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ EIN PG T +S+F +M ++ G F++L+ ++ A Sbjct: 305 GKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLINYA 346 >gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis] Length = 356 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 47/342 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L G S E +VS+ S + +A+ ++V + + + V L +P Sbjct: 3 IILLYGDRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q +E + +PY +G Sbjct: 63 HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 +LAS +MDK+ +K ++ + G+P P + V R + + P +KP Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI ++ + + L ++ ++ + IE+ D + V Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA +P ++ + Q A A+ + G+SR DF Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E+N PG T S++P + G + +L+ +++ A Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343 >gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 364 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 155/356 (43%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG SSE +S S + L+ F+ + + R VL Sbjct: 7 VAVVFGGRSSEHTISCLSAGSVLGHLDPERFEAVPVGITREGRWVLGSGDSAQLAVRGRE 66 Query: 49 ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+ F VLHG FGEDG +Q +LEL Sbjct: 67 LPSVDDGQGLVLAGDPSSQGLVAVEAGRESELLSRVDVVFPVLHGAFGEDGTIQGLLELA 126 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131 IPY G+LASA +MDK +K+++++ G+PV + + + P +K Sbjct: 127 GIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFSALKRGQSTLEQTDREKLGLPVFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--- 188 P + GSS+GI + + + + + ++L+E V G E+ CGV+ Sbjct: 187 PSRAGSSVGISRVADWAGLDAAIALARAT--DPKVLVEAAVVGREVECGVLEFPDGHVEA 244 Query: 189 -----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + ++ ++ +Y +E KY ++ +PAK+ + ++++ +A A +A+ C+G+ Sbjct: 245 SLPAEIRVLSEDENAWYDFETKYLGDDAELDIPAKLDDALTEKLRAMAVEAFRALDCQGL 304 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF ++ E+N PG T S +P+M G + LL +VE A Sbjct: 305 ARVDFFVTE-DHQLIINEVNTMPGFTTKSAYPKMWEVTGMDYPTLLTTLVETAIAR 359 >gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4] gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4] Length = 365 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG SSE +S S + S L+ F+V + V S G VL P Sbjct: 8 VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67 Query: 52 ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75 D+ F VLHG FGEDG +Q +LEL Sbjct: 68 LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIK 131 ++PY G+ ASA +MDK +K+++++ G+PV + R + P +K Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P + GSS+GI + + + + ++L+E V G E+ CGV+ V Sbjct: 188 PSRAGSSVGISRVADWADLDAAIELARRT--DPKVLVEAAVRGREVECGVLEFPDGRVEA 245 Query: 192 IAVPKSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +Y +E KY ++ +PAK+ + ++ +A A +A+ C+G+ Sbjct: 246 SLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQGL 305 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R DF + E+N PG T S +P+M G + LL +++ A Sbjct: 306 ARVDFFVTEE-GDLVINEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTALAR 360 >gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC 15703] gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 378 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 140/370 (37%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S + AL+ F+ + + + ++ P Sbjct: 6 IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D F VLHG +GEDG +Q + E Sbjct: 66 PTVEKTPGAKDVVLEVALGQDGFFAREDDGTMTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ + D Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKTDADAIMA 185 Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + + L + H ++L+EQ +D E Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASRHDWRILVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + + P + +PA +P + Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D KV EIN PG T +S++P+ G Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVT-KDGKVMVNEINTMPGFTSISMYPKAWEATGVR 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLITKLIE 374 >gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis] Length = 347 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 137/343 (39%), Gaps = 46/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG+S E +S+ S L+ ++ I + + Sbjct: 6 IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65 Query: 45 ---------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 VL K DL VLHG GEDG +Q +LE+ IPY + Sbjct: 66 RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V+ + G+P +V T P +KP + GSS G V Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFG--VS 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 K L + + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 184 KVSGKEELAAALAEARQFDSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243 Query: 205 KYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + + ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S +++ + A R Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345 >gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis L2-32] Length = 378 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 141/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S + AL+ F+ + + + ++ P Sbjct: 6 IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D F VLHG +GEDG +Q + E Sbjct: 66 PTVEKTPGAKDVVLEVALGQDGFFAREDDGTLTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ + D Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKANADAIMA 185 Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + + L + +H ++L+EQ +D E Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASHHDWRILVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + + P + +PA +P + Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D KV EIN PG T +S++P+ G Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVT-KDGKVMVNEINTMPGFTSISMYPKAWEATGVR 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLITMLIE 374 >gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 362 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S A++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V +I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM 17393] Length = 324 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 145/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE +VSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++L+E +++G E+TCG V + + + + Sbjct: 185 AFGEA--QEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEVVTENEFFDYDAKYNGQVSEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I D+ +Q L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 362 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S A++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V +I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 362 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S A++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V +I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10] Length = 360 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 147/340 (43%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG+ A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNADEYAAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I ++R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus] Length = 359 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 47/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52 + +L GG S E +V++ S + SA+ ++V I +D++ V L P+ Sbjct: 8 IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67 Query: 53 -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + F VLHG GEDG +Q LE L++PY +G Sbjct: 68 RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134 ++ SA +MDK+ +K ++ + G+P P + V + + + P IKP Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L ++ ++ + IE+ D + V Sbjct: 188 MGSSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIV 247 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + FY Y KY +PA IP ++ ++ + A A+ +G G+SR DF Sbjct: 248 KEEAFYDYNAKYIDNTIQMAIPADIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLT-NK 306 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 ++F E+N P T S++P + G + +L+ +++ Sbjct: 307 NELFLNELNTMPDFTEFSMYPLLWENMGLKYGDLIEELIQL 347 >gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis] Length = 347 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 137/343 (39%), Gaps = 46/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +L GG+S E +S+ S L+ ++ I + + Sbjct: 6 IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65 Query: 45 ---------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 VL K DL VLHG GEDG +Q +LE+ IPY + Sbjct: 66 RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 +SA+ MDK + V+ + G+P +V T P +KP + GSS G V Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFG--VS 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 K L + + ++LIE+ V G E+ C ++G+ + + + + Sbjct: 184 KVSGKEELAAALAEAREFDSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243 Query: 205 KYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 + + ++PA I + VQ A ++A+GCRG++R D V Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PG+T S +P M A AG S +++ + A R Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345 >gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens FB035-09AN] Length = 331 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDL 53 +A++ GG SSE +VSL S + S + + + +DV G + A K D Sbjct: 8 IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67 Query: 54 AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +FN +HG GE+G++Q LEL+ +PY+ +L SAL+ DK + + Sbjct: 68 SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ V SI + + + + P IKP GSS G+ +K I L + Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + ++++E ++DGIE+T G+ V + + + Sbjct: 188 AFM--ESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEVVTSNEFFDYNAKYNGEVDEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271 PA+I ++ +V + + + GI R D++ + + LE+N PGMT Sbjct: 246 TPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIVEN 329 >gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135] gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135] Length = 365 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKV------------SQID--------VDRS 41 ++ GG+S E E+SL S SAL + V +D + + Sbjct: 8 LIFGGVSFEHEISLRSACGIYSALMKLDKYNVFSSFIDKITGVWYLLDSVPDDPKLIKKD 67 Query: 42 VGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 ++ LK D+ F ++HG GEDG +Q L++++IP SGIL SA+ Sbjct: 68 SSAIISLIPGYGIFVNNKDLKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAI 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +P+ P I ++ D + + P ++KP GSS+G Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I + + I + ++ + ++IE+++ E+ C EI + Sbjct: 188 ISIAYNETQIEKCIEEAF--AYDLTVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDF 245 Query: 198 DFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS+ +PA + +++ AF ++ + RG++R DFL + + Sbjct: 246 VFYDYDAKYSTAPGNSVVFNIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDT 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V+ EIN PG T +S+F +M + G + L+ ++ A Sbjct: 306 DLVYINEINTIPGFTDISMFSKMCEHDGLDYGSLVDKLIALA 347 >gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A] gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa] gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A] Length = 346 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 38/338 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------DVDR------ 40 +A+++GG S E +VS+S+G A + ++ A + + +I D D+ Sbjct: 9 IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68 Query: 41 -SVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 + L ++ DLA+ +HGN GE+G++Q ++L +PYT G SAL+ +K Sbjct: 69 NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQS 149 VV S GV + S P +KP GGSS+ +K + Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYEL 204 + + + + Q+L+E++++G E CGV+ +TE+ Y Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDSEYFDYN 248 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 + +S+ V PA++ + ++ + + + + CRG+ R D+ ++P +++LE+N Sbjct: 249 AKYNGSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEVNT 308 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASCLR 300 PG TP SI P+ A AG S +L ++E A+ R Sbjct: 309 IPGQTPESIVPQQARAAGISTADLYHMVIECALAAASR 346 >gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 401 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 142/368 (38%), Gaps = 77/368 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + + GG S+E EVS+ S A + + + + I + + ++ Sbjct: 5 IGLFFGGNSTEHEVSIVSALQAAEFFDKSKYDIVPIYITKDNRFFVSEFTGKIEEYKNIK 64 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+AF ++HG EDG +Q +L +L Sbjct: 65 SLLEKSNQILLVKNGKKVDLVKYPFKVFGNKVYDYIDIAFPIVHGTNVEDGTLQGMLNML 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126 IPY + +SA+ MDK K ++ +PV ++VN+F + + + Sbjct: 125 GIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCLVVNKFKYLENSDEVEENIKSKFNY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185 P ++KP GSS+GI + + D S+ L + +++ ++ E+ C V+GD Sbjct: 185 PVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY-KLIVEPAITSIKEVNCSVLGDME 243 Query: 186 ------SLDVTEIAVPKSDFYSY-----------ELKYSSLNSTHVLPAKIPLDIYKEVQ 228 S Y K + + + LPA I + ++ Sbjct: 244 SASASECEQPIGSGEILSYQDKYESSSGKKTGTSNAKGTMESLSRKLPADIDETTRETIR 303 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++A + +GC G++R DF+ D K++ EIN PG S+ + G + L Sbjct: 304 KMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEINTIPG----SLSFYLWKAVGMDYPNL 359 Query: 289 LLWMVEDA 296 L +++ A Sbjct: 360 LEKLIQLA 367 >gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112] gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC] gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118] Length = 360 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I V++ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343 >gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093] Length = 389 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 81/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A++ GG + E +S S + AL+ F+ I + R ++ P Sbjct: 8 VAIMYGGKADEHSISCISTASVLRALDAERFEPVLIGITRDGVWIVDGEDPRAWDLAAGL 67 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG GEDG +Q + E Sbjct: 68 PSVEQVPGSRPVVLDMSQGGDGFYARNADGTLESLGHIDVVFPVLHGPNGEDGTIQGLFE 127 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----------------T 117 +L +PY G+LASA SMDK +K ++ + G+ V I ++ Sbjct: 128 MLGVPYVGCGVLASAASMDKHYTKVLLDNAGIAVANGITLDTRAFDADTQFAAQGETLLN 187 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIEQYV 172 M + + P +KP + GSS G+ + + L + H ++L+EQ V Sbjct: 188 MVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGDAVSGAAQLAAAVYEAAQHDWRVLVEQGV 247 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIP 220 D E+ C V+ + + ++P + +PA +P Sbjct: 248 DAREIECAVLCPVAGQPVQASLPGEIVLDRRAEGDDQFYDFDSKYMDKQASHVEVPAHLP 307 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D+ + V+ A A +A+ G+SR D V EIN PG T +S++P+ Sbjct: 308 EDVLERVRETAIKAFKAVDGMGLSRVDSFVTA-DGDVIVNEINTMPGFTSISMYPKAWEA 366 Query: 281 AGYSFRELLLWMVEDA 296 +G + EL+ ++E A Sbjct: 367 SGLPYGELITTLIEGA 382 >gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 315 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 16/312 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S ER+VSL SG AL G +V+ D D + L +PD A LHG Sbjct: 5 VVVLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + GE+G +Q+ILE++ IPY + LS +K +K ++ G + ++ T Sbjct: 65 SRGENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRD 124 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP GGS+LG ++ +P L ++ +G+ ++EQ Sbjct: 125 LGAQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAAL--VGAFAYGEIAVVEQ 182 Query: 171 YVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +++G EL V+ P S + YE +Y++ +T+ PA++ + Sbjct: 183 FIEGTELAITVVDRRDGPQALPAVEIAPHSGVFDYESRYTAGLTTYYTPARLDEAVATAA 242 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA AH+ +G R +SR+D V +LE+NV PG+T S+ P AG S E Sbjct: 243 AELAIGAHRTLGLRDVSRTD-AIAGADGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLGE 301 Query: 288 LLLWMVEDASCL 299 L +VE A Sbjct: 302 LYAGLVERAVAR 313 >gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 371 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 158/366 (43%), Gaps = 69/366 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG S E +S + +A++ F+V + + R + P Sbjct: 5 VALLFGGRSGEHGISCVTAGGILAAIDRERFEVIALGITREGRWLHVSDDPSDWTLVDGR 64 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D+ + +LHG +GEDG VQ + Sbjct: 65 APEIDPSGNEVLLPHSRHRPGERITLRTVRDGLIQDLADVDVFWPLLHGVYGEDGTVQGM 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------H 122 LE+L+IPY SG+LASA +MDK +K V+ + G+ P I+V+ + Sbjct: 125 LEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGIVVHEDRWAEESHRVATYLRR 184 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P+ +KP + GSSLG+ + + + ++ ++L+E+ +D E+ CGV+ Sbjct: 185 NHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMKEAF--AEDPKVLVEEGLDAREVECGVL 242 Query: 183 GDASLDVTEIAVP-------KSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLA 234 A +P +FY YE KY + +PA +P + +EV+ + A Sbjct: 243 QGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSIDVPAALPDAVLEEVRETSCRA 302 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+G G++R D +V E+N PG TP S+FP + G S+ +L+ ++E Sbjct: 303 FRALGLEGLARVDMFVT-SDHRVLINEVNTMPGFTPYSMFPVLWENMGLSYADLIAELIE 361 Query: 295 DASCLR 300 A R Sbjct: 362 QARSRR 367 >gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 362 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S A++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 332 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ SG+ S + + + +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + + D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SIL+ R ++ I P +KP GSS G+ +K + L Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + ++++IE ++DG+E++ GV V A + + + Sbjct: 188 AFM--ESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEVVTSNEFFDYNAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271 PA++ + V + + GI R D++ V LEIN PGMT Sbjct: 246 TPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87] Length = 324 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + ++ V+AH Sbjct: 5 IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +K D FN +HG GE+GL+QA LELL IP T + SAL+ +K V+ Sbjct: 65 TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + +N+ + I P +K + GSS GI +K+ + Sbjct: 125 KPYGIKSAKNYFLNKEDAINPDEIIKKVGLPCFVKANRAGSSFGITKVKQKNELYRAAQN 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + D+ +IE ++DG E++ GV+ V +++F+ YE K S Sbjct: 185 AF--QEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEIVSENEFFDYEAK-YLGKSQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I K+VQ +A L ++ + +G +RS+F+F + + ++E+N PG++ SI Sbjct: 242 ITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIF--HNGEPHFIEMNTTPGLSQASI 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ AA AG S ++L +E + Sbjct: 300 LPQQAAKAGISLQDLYGSAIEAS 322 >gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041] Length = 377 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 37 ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+DR + ++A + D + V+HGN GEDG VQ + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASALS DK +K++++ G+ P + + + IKP + GS Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + ++ + + + AV Sbjct: 187 SVGIHRVTNAEEYAAALKDAFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVRVP 246 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + LP K+P + E+ +A A++ +G +G+SR DFL D Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD-S 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 306 NNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIEL 347 >gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 338 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 42/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A++ G I+SE ++S++S + F + + + + Sbjct: 6 VALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSNKLE 65 Query: 49 ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L D+AF +LHG GE G VQ +L+ IP+T + Sbjct: 66 GHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDV 125 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L+SAL MDK + + + G+ + L+ + P ++KP + GSS G+ + Sbjct: 126 LSSALCMDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYV 185 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS---DFYS 201 + + ++ ++LIE Y+ G E+ G++ + + + + Sbjct: 186 RNYDELLNA--CLFAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFD 243 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ KY + + + P + KEVQRL LA + C SR DF ++F E Sbjct: 244 FQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFVTE-DHRIFLNE 302 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +N PG T S +P M AG S+ EL+ M+ED Sbjct: 303 VNTIPGFTSSSRYPGMLDRAGVSYPELITKMIED 336 >gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057] Length = 326 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+++ + S I P IKP GGSS G+ +K ++ I + + Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + ++++E ++DG E+TCG V Y + N S + Sbjct: 185 AFEEA--QEVVVEAFMDGTEITCGCYKTKDKAVVFPITEVVTHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDDLTRRVQALTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160] Length = 329 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 17/313 (5%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 VL GG++ EREVSLSSG A L AG + D D + LA D F LHG Sbjct: 20 VVLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGA 79 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-- 119 GEDG ++A+L+L +PY S + L+ DK +K VV S GV + + T Sbjct: 80 TGEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFREL 139 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP GGS+LG+ + + + +P + S + +GD +++E++ Sbjct: 140 GAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAM--VSCFAYGDTVMVERF 197 Query: 172 VDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 VDG+E + P+S + Y +Y+ + + PA++ ++ + Sbjct: 198 VDGVELALSVVDLGEGPQALPAVEIAPESGVFDYTSRYTPGLTEYHAPARVSDEVAGKAA 257 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 LA H+A+G +SR+D + P +V +LE+NV PG+T S+FP +G S ++ Sbjct: 258 ELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGDV 316 Query: 289 LLWMV-EDASCLR 300 L ++ AS R Sbjct: 317 LAGLLTRRASTTR 329 >gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 15/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58 +AVL GG S+ERE+SL+SGK AL++AG+ V ID + +A D+AF + Sbjct: 11 VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114 HG GEDG +Q +E L IPYT SG+LASA DK SK + + G+P+ P + Sbjct: 71 HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + +KP GSS GI ++ + +P + + ++ +GD++L+E+ ++G Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAI--AKAFAYGDKVLVEKCIEG 188 Query: 175 IELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 E+T GV G+ + I +FY ++KY H +PA+I + Y Q L Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELL 289 A AH+A+GC GISRSDF+ LE N PGMT S++P+ + +F ++ Sbjct: 249 ACAAHKALGCLGISRSDFIVSEDG--PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVC 306 Query: 290 LWMVE 294 ++ Sbjct: 307 DSLIR 311 >gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134] Length = 331 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 33/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AVLMGG SSE E+SL+SG ++L+ ++V + + D S Sbjct: 6 IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65 Query: 42 VGLV-LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D +N +HG GEDG +QA LELL IP T G SAL+ +K S V+ Sbjct: 66 FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125 Query: 101 SSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ F + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNS 211 L +++ +Q+LIE ++ G E++ GV + + S S Sbjct: 186 L--DNAFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEIVPDGDFFSLEAKYSGKS 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++PA++ +VQ L ++ +G +GI R DF+F K ++E+N PG++ Sbjct: 244 QEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFHE--GKPHFVEVNTNPGLSKE 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 SI P AG S E+ +E Sbjct: 302 SIIPREFKAAGLSLTEVFGKAIET 325 >gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 320 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 145/305 (47%), Gaps = 12/305 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG S ER SL+SGK A AL GF ID + + K D+A LHG Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLID-TAEPQAIESIQKIDVALIALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +Q +LE+L +PYT SG+LASA+ M K KQ++SS G+ I ++ Sbjct: 70 PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P IKP GG SLG + + L + ++ + L+E+YV G Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDY-LEYLVEEYVPG 188 Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + GV+ + +FY Y K+ P+ +P D+ + +Q A Sbjct: 189 RPCSVGVIETSGRPEALPVHDVETDREFYDYAAKHDPSKRIENCPSILPKDVTERLQEEA 248 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 H G G+SR DF+ D + + LEIN PG++ + MA AG S+ L+ Sbjct: 249 VRIHMLTGAHGVSRVDFIVD-DNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVTA 307 Query: 292 MVEDA 296 +++ A Sbjct: 308 VLKTA 312 >gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 314 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 16/309 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S ER+VSL SG+ ++AL+ F + + D D + L +PD LHG Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GE+G VQ +LE+L +P+ +G + DK +K +V + G +++ T Sbjct: 66 GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGFVTPGWVVLPHSTFRE 125 Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V+++ +P + + +GD +L E+ Sbjct: 126 LGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAM--VGCFAYGDTVLAER 183 Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +VDG+E+ V+ VP+S Y Y +Y++ + PA++ K V Sbjct: 184 FVDGVEVAVTVIEGEDGPEALPAVEIVPESGVYDYTARYTAGLTDFFTPARLDDAAAKAV 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 LA AH+ +G R ISR+D V +LE+N PG+T S P AG S Sbjct: 244 AELAVAAHRVLGLRDISRTD-AVVMADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSLGA 302 Query: 288 LLLWMVEDA 296 + ++ A Sbjct: 303 VFGELIGRA 311 >gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] Length = 365 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 140/354 (39%), Gaps = 62/354 (17%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AV+ GG+SSE +S S +A++ F VS + + V Sbjct: 7 AVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQL 66 Query: 46 -----------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIPY 79 D + F VLHG FGEDG +Q +LE+ + Y Sbjct: 67 PTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVRY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131 G+ ASA MDK +K ++S GV V P ++V + P +K Sbjct: 127 VGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P +GGSS+GI + + + + + H ++LIEQ + G E+ C V+ Sbjct: 187 PARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAPR 244 Query: 192 IAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +VP + + + A + + VQ +A A Q +GC G Sbjct: 245 ASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEG 304 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R D P V+ E N PG T S FP M +G ++ +++ ++E A Sbjct: 305 LARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357 >gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327] gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327] Length = 364 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 57/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +A+ GG S E +S+ S +A AS ++ + + ++ + +DR Sbjct: 6 VALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALDVAV 65 Query: 45 ------------VLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 L + D+AF LHG++GEDG +Q L+ + Sbjct: 66 LLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLDTFD 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPP 127 IPY G+ +SALSMDK +K + GV V + + P Sbjct: 126 IPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERFAFP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + + L ++ ++L+E+ + G E+ V+G+ Sbjct: 186 VFVKPANLGSSVGISKVHNAAELRPALDKAC--ALDAKVLVEETITGREVEVAVLGNDDP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +P SDFY +E KY ++ V+PA +P ++ V+ A +A+GC G++R Sbjct: 244 IASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 DF + + ++ EIN PG T +S++P + + +G F EL+ Sbjct: 304 VDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349 >gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 374 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 + +L GG SSE +VS S A++ +++ + ++ Sbjct: 13 VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 72 Query: 44 LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V+A P D+ + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 73 QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 132 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137 +LASA S DK +KQ+++ + ++V D IKP GS Sbjct: 133 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 192 Query: 138 SLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 S+GI + +Q + + + + V+ L + L ++ Sbjct: 193 SIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNENPKASKLGAIDVP 252 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + T LP ++P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 253 KTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVSE- 311 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + EIN PG T +S++P++ +G S+ L+ +++ Sbjct: 312 DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQL 353 >gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1] gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 370 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 + +L GG SSE +VS S A++ +++ + ++ Sbjct: 9 VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 68 Query: 44 LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V+A P D+ + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 69 QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 128 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137 +LASA S DK +KQ+++ + ++V D IKP GS Sbjct: 129 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 188 Query: 138 SLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 S+GI + +Q + + + + V+ L + L ++ Sbjct: 189 SIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNENPKASKLGAIDVP 248 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + T LP ++P D+ K +Q+++ A +A+G +G++R DFL Sbjct: 249 KTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVSE- 307 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + EIN PG T +S++P++ +G S+ L+ +++ Sbjct: 308 DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQL 349 >gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624] Length = 325 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 +A+LMGG S E VSL S A L+ + + +I + + Sbjct: 4 IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L L K D AFN +HG GEDG +QA L+ +P T + ASAL+ +K V+ Sbjct: 64 SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P + +N+ S I P +K + GSS+G+ ++ I + + Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDIDQAIEK 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + +++IE+++ G E++ GV+ V ++DF+ YE K S Sbjct: 184 AFEV--DTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEIVSENDFFDYEAK-YQGKSKE 240 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ + K+V+ +A + + +G SRS+++ + LE+N PG+T SI Sbjct: 241 ITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNSI 298 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S L +E+A Sbjct: 299 LPQQAKAAGISLTNLFDNAIEEA 321 >gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606] Length = 331 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+L+ R + I P +KP GSS G+ +K + L + Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAPALRK 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE +++G+E++ G+ V A + + + Sbjct: 188 AFM--ESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEVVTKNEFFDYDAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271 PA++ + +V + + GI R D++ D V LEIN PGMT Sbjct: 246 TPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +++L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329 >gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH] gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH] Length = 365 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+SL S SAL + + +D+ + L Sbjct: 8 LIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIKRD 67 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 L+ D+ F ++HG GEDG +Q L++++IP +GIL SA+ Sbjct: 68 SSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGSAI 127 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S++K K ++ S +P+ P I ++ + ++ P ++KP GSS+G Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSSIG 187 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I + D I + ++ + +++E+++ E+ C EI V Sbjct: 188 ISIAYNDTQIEKCIEEAF--EYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQDF 245 Query: 198 DFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KYS++ +PA++ + +++ AFL ++ + RG++R DFL + + Sbjct: 246 VFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEKDT 305 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G + L+ +V A Sbjct: 306 NLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 >gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 360 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNAAEYTAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101] Length = 364 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 151/343 (44%), Gaps = 50/343 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49 ++ GG+S E VS+ S A+AL +++S +D+ VLA Sbjct: 9 GLVFGGVSGEHAVSIRSANTVAAALRRGANAERYQLSCFYIDQWGHWWPPAVADAVLAKG 68 Query: 50 KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 P + VLHG GEDG +Q + L+++P+ SG+ Sbjct: 69 TPASREELPAAPLRPGFQGFPEGALDMQVWVPVLHGPNGEDGTIQGLFSLMQVPFVGSGV 128 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135 L SA+ MDK K ++ G+P P V+ + + P IKP Sbjct: 129 LGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQELEADPQALLDRLEQQLGYPCFIKPANL 188 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IA 193 GSS+GI + L ++ +H +L++EQ +D EL C V+G S+ + Sbjct: 189 GSSVGISKATNRSELLAGLELAA--SHDPRLVVEQGIDARELECAVLGGRSMQASVLGEI 246 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 +D+Y Y+ KYS S V+PA++ I + +A A +A+ G++R DF D Sbjct: 247 CFDADWYDYDTKYSDGKSHTVIPAEVSSAISDRARSMAIAACRAVAAEGLARVDFFLDRS 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 S ++ EIN PG T S++P + +G L+ +V+ A Sbjct: 307 SGDLWLNEINTLPGFTSQSMYPMLWEASGLPLDALVHQLVQLA 349 >gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 308 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 149/306 (48%), Gaps = 16/306 (5%) Query: 4 LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63 L GG+S ER+VSL SG+ ++AL G V++ D D + + +PD LHG G Sbjct: 2 LAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGEG 61 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--- 120 E+G VQ++L++ IPY + A + DK +K ++ G+ +++ T Sbjct: 62 ENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELGA 121 Query: 121 -------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + P ++KP +GGS+LG V++ +P + + ++GD +L+E+Y++ Sbjct: 122 QSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAM--VGALSYGDTVLVEKYIE 179 Query: 174 GIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G E+ + Y Y +Y++ +T+ PA++ + L Sbjct: 180 GTEVAIGVLDGPDGPEALPAVQIEATNGVYDYTARYTAGLTTYRTPAELSPETAAAAGDL 239 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A AH+ +G R +SR+D + D V +LE+NV PG+T S+ P AG S ++ Sbjct: 240 AVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVFA 298 Query: 291 WMVEDA 296 +VE A Sbjct: 299 TLVERA 304 >gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 371 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 140/357 (39%), Gaps = 65/357 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG SSE +S ++ A++ F+V + + L Sbjct: 9 VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPRGAFTLQEDDASALALDAAA 68 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 D+ F +LHG GEDG VQ +LEL Sbjct: 69 LPEVVDDGSRVRWPEDAGSRELTVRDADGTERSLGPVDVVFPILHGTQGEDGTVQGMLEL 128 Query: 75 LEIPYTHSGILASALSMDKMRSKQV--------VSSCGVPVCPSILVNRFTMDSQHLISP 126 +PY SG+LASAL MDK +K V V + + Sbjct: 129 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGL 188 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------G 180 P +KP + GSS+G+ + + L + D++L+E + G E+ C Sbjct: 189 PAFVKPARAGSSVGVSRVVATDGLDAALEVAF--REDDRVLVESGLVGREVECAILDEGP 246 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239 ++ EI V DFY ++ KY + V PA + E++ L+ A +A+ Sbjct: 247 GRAPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVD 306 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG++R DF EIN PG TP+S+FP +G ++ +L+ +++ A Sbjct: 307 ARGLARVDFFLTADG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVA 361 >gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319] Length = 332 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ S + S + + + +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + H++ D A+ +HG GE+G++Q +L+ +PY+ S +L AL+ DK + Sbjct: 68 SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SI + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D+++IE ++DG E++ GV + A + + + Sbjct: 188 AFM--ESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEVVTSNEFFDYNAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271 PA+I D K V + + GI R D++ D V LEIN PGMT Sbjct: 246 TPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205] Length = 364 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 85/341 (24%), Positives = 142/341 (41%), Gaps = 46/341 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49 ++ GG++ E VS+ S A+AL +++ +D+ VLA Sbjct: 9 GLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAKG 68 Query: 50 KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 P +L VLHG GEDG +Q + L+++P+ SG+ Sbjct: 69 TPAERSELPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGSGV 128 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135 L SA+ MDK K ++ G+P P V+ + + P IKP Sbjct: 129 LGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPANL 188 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI + L ++ + + +E V Sbjct: 189 GSSVGISKASNRAELMQGLALAAQHDPRMVVEQGIQARELECAVLGGQQMRSSVLGEICF 248 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y Y+ KYS S V+PA++P + + + +A A +A+G G++R DF ++ S Sbjct: 249 DADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFYEQASG 308 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T S++P + A G EL+ +V+ A Sbjct: 309 ALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQLA 349 >gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus DSM 14838] Length = 324 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE +VSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + + D A+ +HG GEDG +Q +LL IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S++ + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++LIE Y++G E+TCG V + + + + Sbjct: 185 AFDEA--QEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEVVTENEFFDYDAKYNGQVSEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ D+ +Q L + +G GI R D++ KV LE+N PGMT S Sbjct: 243 TPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKVNLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331] gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331] Length = 372 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 ++VL GG S+E E+S+ S K + L+ A + +S I + L Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66 Query: 50 ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 KP D F ++HG GEDG +Q +LELL +P Sbjct: 67 LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131 Y + + +SA+ M+K +K V+ + G+PV ++ + + +K Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 + GSS+ + +K + + + + D+L++E + G E+ C V+G+ + + Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244 Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248 +P D+YSY+ KY N + + + K++Q++A A + + C G++R DF Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P + KV EIN PG T +S++P+M +G LL ++E A R Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354 >gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG] gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG] Length = 360 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG S+ER VS+SSG +AL G + + ID+ + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 41 SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 + + L+ D + F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V + + P + +++ ++ ++ +G + R DF Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 331 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + H+ D A+ +HG GE+G++Q +L+ +PY+ SG+L A++ DK + Sbjct: 68 SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SI + I P +KP GSS G+ +K + L Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++++IE ++DG E++ G+ A V A + + + Sbjct: 188 AFM--ESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEVVTNNEFFDYDAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271 PA++ + +EV + + + GI R D++ KV LEIN PGMT Sbjct: 246 TPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S P+ AG +++L +V Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIV 327 >gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYAVSLASATSALEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 355 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 53/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A++ GG SSE VSL S + + +++ I + + Sbjct: 7 AIIFGGKSSEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYDGDVDGIEHDTWLC 66 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 ++ D F +LHG GEDG +Q + EL IPY Sbjct: 67 EEHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131 G ++SA+ MDK + V+ G+ P + V ++ + P IK Sbjct: 127 VGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189 P GSS GI ++ + + + ++++E ++G E+ VMG+ L Sbjct: 187 PANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGS 246 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + F+ YE KY ++S PA+I +++E + +A A++A+ C+G++R D Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMF 306 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + E+N PG T S +P M AG F EL+ +V A Sbjct: 307 VTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] Length = 318 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 10/304 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRS-VGLVLAHLKPDLAFNVL 58 +AVL GG S ERE+S +SG++ AL+ AG+ +V +D S + D F L Sbjct: 11 IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG GEDG +Q +L+ L IPYT SG+ ASA + DK SK + G+PV + + R Sbjct: 71 HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130 Query: 119 DSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + +KP GSSLG+ +I+ +P + ++ + + Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAVERAFESSDKVLIEQRLIGTE 190 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAF 232 I + DA + + Y + ++ H +PA++P I + LA Sbjct: 191 ISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGALAL 250 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 AH+A+GC G SRSDF+ LE N PGMT S+FP+ + G +F E M Sbjct: 251 GAHRALGCYGFSRSDFIVTEEG--PVILETNTIPGMTEASLFPDEIRHCGRTFAEACDEM 308 Query: 293 VEDA 296 + A Sbjct: 309 IMLA 312 >gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 364 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 62/358 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 +AV++GG S E VS +S +AL+ ++V + + ++ + + Sbjct: 6 VAVVLGGRSVEHPVSCASAAGVIAALDPEQYEVVAVGITQAGQWLSVDARSAKLALGDGN 65 Query: 51 -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73 D+ F VLHG +GEDG +Q +LE Sbjct: 66 VPEISADSGQHVVLAADPTMKDVAITDAAGGARVLSDVDVVFPVLHGAYGEDGTIQGLLE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130 + ++PY S +L+SA SMDK K+++ + G+PV +++ R S+ + P + Sbjct: 126 MADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYVVLKRDQTLSEAEKQRLGLPVFV 185 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV 189 KP + GSSLGI + + + + + ++L+E G EL CGV+ Sbjct: 186 KPSRAGSSLGISKVTDWDDLDKAIATARAV--DPKVLVEAAFTGVRELECGVLEREDGGA 243 Query: 190 TEIAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + P ++ +E KY + S + L +P + ++ LA + C Sbjct: 244 PDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLPEGTAERIRELAARVFTVMDCSD 303 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++R DF V+ EIN PG+TP S P A AG + EL+ +V A+ R Sbjct: 304 LARVDFFL-ASDGTVYVNEINTMPGLTPGSGVPVAWANAGVDYPELVARLVRLAA-NR 359 >gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella denticola F0289] gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola CRIS 18C-A] gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola F0289] Length = 332 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VS+ SG+ S + + + +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GE+G++Q +LL +PY+ SG+L A++ DK + Sbjct: 68 SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V SI + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D++++E ++DG+E++ GV + V A + + + Sbjct: 188 AFM--ESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEVVTSNEFFDYNAKYNGQVQEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271 PA++ + + V + + GI R D++ D V LEIN PGMT Sbjct: 246 TPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329 >gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris PB013-T2-3] Length = 377 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36 +A+L GG SSE +VS S A++ + VS Sbjct: 7 VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66 Query: 37 ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+DR + ++A + D + V+HGN GEDG +Q + +LL+ PY SG Sbjct: 67 QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASALS DK +K++++ G+ P + + + IKP + GS Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + + L + ++ + + + AV Sbjct: 187 SVGIHRVTNAEEYAAALKDAFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVRVP 246 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + LP K+P + E+ +A A++ +G +G+SR DFL D Sbjct: 247 ESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD-S 305 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M +G S+ +L+ ++E Sbjct: 306 NNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIEL 347 >gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056] Length = 324 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ + + I + + Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E +++G+E+TCG V Y + N S + Sbjct: 185 AFAEA--KEVLVEAFMEGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322 >gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 146/339 (43%), Gaps = 45/339 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S E EVSL+S ++ +A A F V+ + + R L+ Sbjct: 17 LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75 Query: 46 --------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 L D+ F +LHG FGEDG VQ +L+LL +P+ S +L SA+ M Sbjct: 76 PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIV 143 DK K V ++ G+P P L+ R P +KP GSS+GI Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201 + + L ++ ++ L+ EL GV V +S FY Sbjct: 196 ADDPEGLREALETAARYDR-RVLVERGLARARELEVGVLGNDAPRASVVGEIRYESLFYD 254 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY+ + ++PA IP ++ Q LA A +A+ G++R DF +++ E Sbjct: 255 YSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELYLNE 312 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 IN PG T S+FP++ +G + L+ ++ A R Sbjct: 313 INTMPGFTRTSMFPKLWEASGVPYDALITQLIALALEAR 351 >gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia garinii PBr] Length = 361 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197 I V ++ + + +LIE++++ E+ C EI V Sbjct: 187 INVAYS--ESQIEFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA++ + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ EIN PG T +S+F +M ++ G F++LL ++ A Sbjct: 305 GKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLLDNLINYA 346 >gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482] gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482] gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA] gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism] gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus PC510] gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 324 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE ++ G E+TCG + +V + + S + Sbjct: 185 AF--EESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus] Length = 350 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVV------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+ SAL M+K Q S+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697] Length = 324 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR-SV 42 +A+ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L K D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + ++L+E ++ G E+TCG V Y + N S + Sbjct: 185 AFKEA--REVLVEAFMQGTEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322 >gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 64b] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens] gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens] Length = 328 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + + +D ++++ Sbjct: 5 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GE+G++Q EL+ IPY+ +LASAL+ DK + + Sbjct: 65 SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S G+ V SI + I P +KP GSS G+ +K + L + Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAPALRK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + ++++E ++DG+E+T G+ V + + + Sbjct: 185 AFM--ESSEVMVESFLDGVEITQGIYKTREKSVPFPITEVVTSNEFFDYNAKYNGEVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271 PA+I ++ ++V + + + GI R D++ + + LE+N PGMT Sbjct: 243 TPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGMTVT 302 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 303 SFVPQQVRAAGLDIKNVLSDIVEN 326 >gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 60-B] gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 1401G] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus rhamnosus HN001] Length = 360 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG S+ER VS+SSG +AL G + + ID+ + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 41 SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74 + + L+ D + F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V + + P + +++ ++ ++ +G + R DF Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 NKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 3008A-a] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D+ + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I K V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC 43183] Length = 324 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E ++DG+E+TCG V Y + N S + Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322 >gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664] Length = 360 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG +A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q + +L+ P+ ILA+A+ Sbjct: 67 VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I V R + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ + V+ + + Sbjct: 187 VGVSHVTNADEYKKALDEAF--KYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA++P I ++V+ A +QA C G++R D + P Sbjct: 245 AGSWYSYENKYDDNSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP-D 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIE 343 >gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 324 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR-SV 42 +A+ GG +SE EVSL S + S ++ + + ++ VDR Sbjct: 5 IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L K D + +HG GEDG +Q L++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + ++L+E ++ G+E+TCG V Y + N S + Sbjct: 185 AFKEA--REVLVEAFMQGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322 >gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46] gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46] Length = 324 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + S ++++IE ++ G ELTCG V + + + Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 03V1-b] gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 01V1-a] gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2062A-h1] Length = 361 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 48/345 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTDG 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 KV + E+N PG T +S++P++ AG + EL+ +++ A Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349 >gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYAVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q + GV P+I R P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQTHDFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 244 SLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345 >gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 350 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYAVSLASATSAIEALQSSPDDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+I P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQDQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345 >gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN] gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US] gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US] gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1] gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05] Length = 360 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG+ A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNADEYTAALKEAF--KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 378 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 154/365 (42%), Gaps = 70/365 (19%) Query: 3 VLMGGISSEREVSLSS------------------------------------------GK 20 ++ GG SSE EVS ++ G+ Sbjct: 11 IVFGGRSSEHEVSCATAAGILRAIDRDKWDVVPLGITKDGQWVPASDDPALLEFKDGKGQ 70 Query: 21 ACAS------------ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 + + +L + + D V + D+ +LHG +GEDG + Sbjct: 71 SVEAGATRVALTPGGGSLVELSYDGDPADPGARVVGARDLGRVDIVLPLLHGPYGEDGTI 130 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120 Q +LE+ E+ Y G+ +SA+SMDK +K V + ++ Sbjct: 131 QGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWELITPLQWEADQGACLER 190 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +KP + GSS+GI ++ + + + + NH ++++E V G E+ CG Sbjct: 191 AAALGFPVFVKPCRAGSSVGISKVESREGL--AVAVKEAQNHDPRVIVEAGVVGREVECG 248 Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 V+G S + EI VP +FY YE KY V PA++ + V+ A A Sbjct: 249 VLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPAEVAPAYEERVRETALRA 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 A+ C G++R DF D S V E+N PG TP+S+FP+M A AG + L+ ++E Sbjct: 309 FDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQMWAAAGVDYPSLIDALLE 368 Query: 295 DASCL 299 +A+ Sbjct: 369 EAAAR 373 >gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30] gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10] gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus] gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30] gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10] Length = 350 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDTI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304] Length = 385 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 81/376 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +A+L GG + E +S S + AL+ + F+ I + ++ + + P Sbjct: 9 IAILYGGRADEHPISCISAGSVLRALDTSKFEPVPIGITKNGTWITDGVDPREWNLGSGA 68 Query: 52 ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71 D F VLHG +GEDG +Q + Sbjct: 69 LPAVEETASSRRVVLDPSAGSEGFLVFNRQTGKNESLGHIDAVFPVLHGPYGEDGTIQGL 128 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------- 124 LE++ IPY G+ ASA MDK +K ++S G+ V P I ++ + Sbjct: 129 LEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGITLDTRSYHRDSHFVADGESL 188 Query: 125 ---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQ 170 P +KP + GSS G+ + Q L + + + NH ++LIEQ Sbjct: 189 LQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQDKSLLMNRLSAAVFEAANHDWRVLIEQ 248 Query: 171 YVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN-STHVLPAKIP 220 +DG E+ C V+ + E ++P FY ++ KY S +PA +P Sbjct: 249 GIDGREIECAVLAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHVEVPAHLP 308 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + ++V++ A A A+ +G+SR D +V EIN PG TP+S++ + Sbjct: 309 QKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTA-DGQVLVNEINTMPGFTPISMYAKAWEA 367 Query: 281 AGYSFRELLLWMVEDA 296 G S+REL+ +++ A Sbjct: 368 MGLSYRELISRLIDGA 383 >gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170] Length = 327 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 144/321 (44%), Gaps = 30/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++MGG SSE ++SL SG L+ ++ +I + D Sbjct: 5 VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN +HG GEDGL+QA ELL IP T G +AL+ +K V+ Sbjct: 65 SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ PS +N ++ I P +K K GSS GI + + + + Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDRLKEAI-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214 ++ D+++IE ++DG E++ GV+ + + S + Sbjct: 183 EFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEIVTENDFFDYEAKYEGKSQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I K V + A A+ + G SRS+F+F + + F LE+N PG+T SI Sbjct: 243 TPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTESIL 300 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A AG S EL +E+ Sbjct: 301 PQQAGEAGISLSELFGGAIEE 321 >gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4] Length = 363 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 59/349 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 ++ GG S+E ++S+ + + + ++V I + +S V Sbjct: 5 LVYGGKSAEHDISILTAFSIIKEVYYDYYEVEPIYITKSGQWVKGAIVKQANEVKDSDAL 64 Query: 46 ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 L + F VLHG GEDG VQ + E++ +P Sbjct: 65 KLTISDSSKFATDENQNSEGILVQPSDLKEENA-VIFPVLHGPNGEDGTVQGLFEVIGMP 123 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYV 129 Y +G+LASA MDK+ SKQ+ G+P P + V + + + P Sbjct: 124 YVGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKESVFKHCEGTLFYPMY 183 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 IKP GSS+GI + + + + + ++++EQ ++ E+ ++G+ + + Sbjct: 184 IKPANLGSSVGISKAENRDELIEAIELAL--RYDRRVVVEQGIEAREIEVAILGNDDIHI 241 Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + DFY YE KY + +PA +P D+ ++ A A QA+ G+SR D Sbjct: 242 SVPGELVKTVDFYDYESKYLNNEVVLQIPALVPEDVNTRLREYAVRAFQALDGSGLSRCD 301 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F + ++F E+N PG T S++P + G ++ +L+ +++ A Sbjct: 302 FFLT-SNDELFINEVNTMPGFTQFSMYPSLWKNTGLNYGDLVEELIQLA 349 >gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1] gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1] Length = 353 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 50/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE VSL S + L+ + + I + + Sbjct: 5 IAILFGGHSSEYSVSLESAYSVLCHLDHDKYNIYMIGITKDGKWYHFDGDILDIQNDTWW 64 Query: 46 -----------------LAHLK--------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 L +K D F +LHG GEDG VQ ++ L IP Sbjct: 65 QHPLHEVTISPDPTKHALIEMKTDHFILVHIDAIFPILHGKNGEDGTVQGLIALSGIPLI 124 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKG 135 + +SAL MDK R+ Q+V+ G+ V S ++ + P +KP+K Sbjct: 125 GCSVASSALCMDKERAHQIVNHAGIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKA 184 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193 GSS GI + I + + + +++LIE+ ++G E+ C VMG L + Sbjct: 185 GSSYGITKVTHLDEIEKAIEFAF--TYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEI 242 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ + KY+ +S +PA+I I K +Q A + ++A+GC+ +R D P Sbjct: 243 ELSQGFFDFTEKYTLKSSQIHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTPE 302 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + E+N PG T S FP M GYSF +L ++E Sbjct: 303 -NEIVFNEVNTIPGFTSHSRFPSMLQGIGYSFENILDKLIE 342 >gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna ACS-171-V-Col3] Length = 350 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 147/334 (44%), Gaps = 44/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S+E EVS++S + + L + V+ I V R + Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEELIL 66 Query: 46 -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++ + P+ + F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146 MDK + + +P +++ + + I +KP GSS+G++ + Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203 ++ + + + + ++L+E+ + G EL VMG+ + + +F+ Y+ Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + + P + + + + LA ++ + G SR D +++ EIN Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302 Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 PG+TP S+FP + S E+ +++ A Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336 >gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917] Length = 344 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 48/341 (14%) Query: 4 LMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLA------------ 47 + GG S E +++ S AL F V +DR+ A Sbjct: 2 VFGGASGEHTIAIRSATTVIQALRSGRNRERFDVVPFYIDRAGRWWPAVVAESVLQNGVA 61 Query: 48 ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 ++ + VLHG GEDG VQ + L+ P+ +G+L Sbjct: 62 AEEADLPQPLPAPGFSQLPAGSETVEIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLG 121 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKG 135 SA+ MDK+ K ++ G+ + ++ ++++ + P +KP Sbjct: 122 SAMGMDKLAMKAAFAAAGLAQVAYVGLDASSLNNAATRATLLERIETELGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ +H + +E + V Sbjct: 182 GSSVGISKVRNRAELERGLAVAAELDHRLVVEQGVQARELECAVLGVRQLKASVVGEIRF 241 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 +D+Y Y+ KYS S ++PA I +VQ +A A + +G G +R DF +D Sbjct: 242 DADWYDYKTKYSDGLSHTLIPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDATQE 301 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ E+N PG T S++P + +G +L+ +VE A Sbjct: 302 RLWINEVNTLPGFTSQSMYPMLWEASGLPLEDLVAQLVESA 342 >gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195] Length = 366 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 152/342 (44%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 193 VGISHVTSAADYEKALAEAF--KYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+ A + A C G++R D + Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 309 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351 >gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484] Length = 323 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 20/309 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AV+ GG S E EVSL+S + AL + V + + R +P Sbjct: 8 VAVVGGGQSCEHEVSLASAASVVGAL-TDRYDVVPLTITRDGTWCDEVGRPVGLARAVQT 66 Query: 52 ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 ++HG GEDG + A+ EL +PY SG+ A AL+MDK +K V + GV Sbjct: 67 LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126 Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 P L+ + ++ P V+KP+ GSS G+ +++ + L + ++L Sbjct: 127 APGRLL-TAATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPALDAALRL--DGRVL 183 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKE 226 +E V+G E+ V+ V + + + +PA +P + Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYGGTADLRVPADVPEADAQA 243 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ A A+GC G++R DF E+N PG+T S P M A AG S+ Sbjct: 244 LRDAAVRVFDALGCAGVARVDFFLTADG--PVLNEVNTTPGLTEHSQVPRMFAAAGLSYP 301 Query: 287 ELLLWMVED 295 +LL +V D Sbjct: 302 DLLDRLVRD 310 >gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 344 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + +++++E ++DG ELTCG V + + + Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1] gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4] gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A] gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22] Length = 324 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++L+E ++DG ELTCG V + + + Sbjct: 185 AFGEA--QEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVV------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 G+ SAL M+K Q S+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20] gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20] Length = 350 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 150/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ +SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345 >gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 150/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ +SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345 >gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1] gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705] Length = 360 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG S+ER VS+SSG +AL G + + ID+ + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 41 SV--------GLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILEL 74 + + L+ D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 V + + P + +++ ++ ++ +G + R DF Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + V+ +E N PGMTP+S+ P+ A G + +L++ ++ Sbjct: 299 DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339 >gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1] Length = 328 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 30/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG + E +SL S + ++V +I + D Sbjct: 5 IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + + D FN+LHG+ GEDG + +++ IPYT L SA++M+K +K VV Sbjct: 65 SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124 Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + Q ++ P IKP GGSS+G+ +K + L Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEALD 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212 ++ + Q+L+E++V G E + GV V +F+ +E KY + + Sbjct: 185 KAF--DEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEIVSSKEFFDFEAKYVAGVTN 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + P ++ + V R+A ++ + C+G R D+ S K +++EIN PG T S Sbjct: 243 EITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTETS 302 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 + + G R+ ++E+ Sbjct: 303 LISQQVRAYGMEVRDFYTQLIEE 325 >gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia burgdorferi 156a] Length = 361 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ ++ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFLA++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M + G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346 >gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701] Length = 373 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 60/354 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48 + ++ GG S E VS+ S L + ++V +DR VL+ Sbjct: 8 VGLVFGGASDEHAVSIRSAITVVGGLREGENLLRYRVRPFYIDRRGRWWGPELAEAVLSS 67 Query: 49 LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 +P D+ F VLHG GEDG +Q + L+++P Sbjct: 68 AEPAPDEQLNETAADQPLGGAGFQGLPPEAAGVDVWFPVLHGPNGEDGTIQGLFALMQVP 127 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129 + SG+L SAL MDK K ++ G+P P V + + + P Sbjct: 128 FVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYAAVQAADLRHDPEGLLQRLERDLGYPCF 187 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI S+ L ++ +L++EQ V EL C V+G + Sbjct: 188 VKPANMGSSVGISKASDRSSLLQGLELAA--ALDPRLVVEQGVTARELECAVLGQGAAAG 245 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + + + + +PA++P + + ++ +A A A+ G Sbjct: 246 GGLKASVVGEIRFSADWYDYETKYTAGLSSTVIPAELPEAVSERLRAMALQACAAVATEG 305 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++R DF +D +++++ EIN PG T S++P + A +G +L+ +VE A Sbjct: 306 LARVDFFYDEAAQRLWLNEINTLPGFTSQSMYPMLWAASGVPLVDLVHQLVESA 359 >gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1] gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 367 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 137/352 (38%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A+L GG S+E +VS +S +L+ + + V+ I + VLA Sbjct: 8 VAILFGGRSAEHDVSRASAANIFRSLDASRYAVTLIGITPEGRWVLADAVNARTAQALTV 67 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D+ F VLHG GEDG +Q LEL ++ Y Sbjct: 68 PPDGPQIVLLPAGQGRALVLGDGAAAPRELTFDVIFPVLHGPNGEDGTMQGALELADVAY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLK 134 + ++ SA +MDK +K+++ G+P+ P + + + + IKP Sbjct: 128 VGARVMGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAAAPVSYEDAVHAVGCSELFIKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------ 188 GSS+GI + Q + G L+ E+ C V+ A + Sbjct: 188 LGSSVGISKARTPQEF-AAACDLALRFDGKILIERCISPVREIECAVLEHADGEVKASEL 246 Query: 189 -VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + + ++ +PA++ + + ++++A + C ++R D Sbjct: 247 GEIVPASSHGFYSYAAKYTDASGASLHVPAQVEPGLAQRIRKMATEVFGVLCCESLARVD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 F +V+ E+N PG T +S++P+M G L+ ++ A Sbjct: 307 FFV--HGEEVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDALIAHALAR 356 >gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134] Length = 394 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 85/361 (23%), Positives = 145/361 (40%), Gaps = 70/361 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V GG S E E+S+ S A++ + + V+ I + ++ Sbjct: 5 IGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYRKLD 64 Query: 50 -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74 K D+AF VLHG+FGEDG +Q + EL Sbjct: 65 ELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQGLFEL 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 + IPY +L+SA+ MDK+ K V+ G+PV + + + Sbjct: 125 MGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVEQTLG 184 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P ++KP GSS+GI + + + ++ ++H L+ + VD E+ C V+G+ Sbjct: 185 YPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSH-KLLVEQTIVDLKEINCSVLGNY 243 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST----------HVLPAKIPLDIYKEVQRLAFLAH 235 + LPA+IP ++ ++Q+LA Sbjct: 244 ENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAVDTF 303 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 Q +GC G+SR DFL D + +V+ EIN PG S+ + +F +L+ +++ Sbjct: 304 QVLGCAGVSRIDFLLDQATNEVYVNEINTIPG----SLSFYLWEATDKNFGQLVNDLIDT 359 Query: 296 A 296 A Sbjct: 360 A 360 >gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12] gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12] Length = 324 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 141/321 (43%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++++IE ++ G ELTCG V + + + Sbjct: 185 AFGEA--EEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGMDIKDVMTDIIEN 322 >gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100] Length = 329 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 28/319 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43 +A+L GG +ER VSL S + L D ++ I++ D S+ Sbjct: 4 VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++K DL + +LHG+ EDG +Q E+L IPYT +++SA++ +K K + S Sbjct: 64 TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123 Query: 104 GVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 +P+ PS ++ + + + P +KP K GSS G + + + + Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQLAGAIEHAF-- 181 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + D++++E ++ G E + GV+ VP ++F+ ++ K S + PA Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEIVPHNEFFDFKAK-YENQSQEITPA 240 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 ++ + +VQ L ++A+GCRGI R D++ + F+LE N PGM+ SI P+ Sbjct: 241 RLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQQ 298 Query: 278 AAYAGYSFRELLLWMVEDA 296 A G+S ELL V++A Sbjct: 299 ARAHGWSITELLDAAVDEA 317 >gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7] Length = 366 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 57/348 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA----- 54 ++ GG S+E ++S+ + + + ++V I + RS + + D+ Sbjct: 5 LVYGGKSAEHDISILTAFSIIKEVYYDYYEVQPIYITRSGQWIKGAIVKQASDIVASDAL 64 Query: 55 -----------------------------------FNVLHGNFGEDGLVQAILELLEIPY 79 F VLHG GEDG VQ + E++ +PY Sbjct: 65 KLAVSDNVQFAVDDNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPY 124 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130 +G+LASA MDK+ SKQ+ G+P P + V + + + P I Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMYI 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + + + ++++EQ ++ E+ V+G+ + ++ Sbjct: 185 KPANLGSSVGISKAENRDELIAAIELAL--RYDRRVVVEQGIEAREIEVAVLGNDDIHIS 242 Query: 191 EIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 DFY YE KY + + +PA I D+ ++ A A QA+ G+SR DF Sbjct: 243 VPGELVKSVDFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDF 302 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +VF E+N PG T S++P + G ++ +L+ +++ A Sbjct: 303 FLT-SNDEVFINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQLA 349 >gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 324 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E ++DG+E+TCG V Y + N S + Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLEIKDVMTDIIEN 322 >gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855] Length = 324 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE ++ G E+TCG + +V + + S + Sbjct: 185 AF--KESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++P DI + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 243 TPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai str. 56601] Length = 351 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV GG S+E +S+ +G L G V I + + G V Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L D+ F LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ + + + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190 S+ + I + + L +++ + ++ GIE++CGV+ Sbjct: 184 SVSVYKITNREQLKEKLALIF--ESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFII 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 302 --VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 368 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 146/369 (39%), Gaps = 87/369 (23%) Query: 1 MAVLMGGISSEREV------------------SLSSGKACASALEDAGFKVSQIDVDRSV 42 + +L GG S E EV S ++V + + Sbjct: 6 IGLLFGGRSGEHEVSISSARAIARAIASDQNAS--------------KYEVLPFYIQKDG 51 Query: 43 GL--------VLAHLKP-----------------------------------DLAFNVLH 59 VL KP D+ F VLH Sbjct: 52 RWLAGTVPQQVLETGKPLQLEGEEAIANLGENLILTPQSPIAYGQFPRPDIVDVWFPVLH 111 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G GEDG VQ +L+L+++P+ SG+L SA+ MDK+ K V + G+P V R + Sbjct: 112 GPNGEDGTVQGLLKLMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYTAVTRSQVW 171 Query: 120 SQHLIS------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 S I P +KP GSS+GI ++ + L ++S++ + Sbjct: 172 SNPCIFPKLCDQIEENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAASYDRRIIVE 231 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 +E + KSDFY YE KY+ + +PAK+ I ++ Sbjct: 232 AGVVARELECAVLGNDRPQASIVGEITYKSDFYDYETKYAHGQADLFIPAKVSDAIASQI 291 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q +A A A+ C G++R DF + + +V EIN PG T S++P++ A +G SF E Sbjct: 292 QSMAIEAFLALDCAGLARVDFFYVESTGQVLINEINTLPGFTATSMYPQLWAASGISFAE 351 Query: 288 LLLWMVEDA 296 L+ +++ A Sbjct: 352 LVDRLIQLA 360 >gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516] Length = 350 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 148/334 (44%), Gaps = 44/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S+E EVS++S + + L + VS I V R + Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDELVL 66 Query: 46 -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++ + P+ + F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146 MDK + + +P +++ + + I +KP GSS+G++ + Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRAET 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203 ++ + + + + ++L+E+ + G EL VMG+ + + +F+ Y+ Sbjct: 187 EEELEQAIQNAF--LYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + + P + + + +RLA ++ + G SR D +++ EIN Sbjct: 245 AKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMFV--RDNELWVNEIN 302 Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 PG+TP S+FP + S E+ +++ A Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336 >gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922] Length = 329 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 92/322 (28%), Positives = 154/322 (47%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AV+ GG S E +SL S + + ++ ++ + D S Sbjct: 4 VAVVAGGYSDESVISLKSCELIYQNINTEKYEPIRVRILKDAWYAEIDGEKYPINKADFS 63 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K DL +N +HG GEDG +QA +L+ +PY SAL+ +K V+S Sbjct: 64 FERNGKKEKFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLS 123 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P S+ + + I P +KP K GSSLGI + +++ IP L + Sbjct: 124 KYGIPHAKSVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKALELA 183 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV 214 ++LIE ++DG+E++ GV+ V ++F+ YE K S + Sbjct: 184 F--AEDKEVLIEAFLDGLEVSVGVLKYKGKTTVLGITEIVSDNEFFDYEAK-YDGKSQEI 240 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I + + V+ +A + ++ G SR++++ + + + LEIN PGM+P SIF Sbjct: 241 TPARISQETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASIF 298 Query: 275 PEMAAYAGYSFRELLLWMVEDA 296 P+ AAYAG S +EL+ ++ A Sbjct: 299 PQQAAYAGISLQELVQNELDFA 320 >gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4] gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4] gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA] gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA] Length = 324 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE ++ G E+TCG + +V + + S + Sbjct: 185 AF--KESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1] Length = 360 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 145/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L++ P+ +L +A+ Sbjct: 67 VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNADEYTAALKEAF--KYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I V+ A + A C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343 >gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 341 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + +++++E ++DG ELTCG V + + + Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2] gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483] gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23] gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 324 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + + I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + +++++E ++DG ELTCG V + + + Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ K VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae] Length = 347 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 155/334 (46%), Gaps = 41/334 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + +L GG S+EREVS+ S ++ A+ F V + +S + Sbjct: 5 IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64 Query: 50 ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + F VLHG GEDG VQ LE+L++PY IL+S+L+ Sbjct: 65 MTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144 MDK+ +K+V+ S G+ P + + + ++ P KP GSS+GI Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202 + + + L + + ++L+EQ V+ E+ G++G+ + T V FY Y Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + KY T +PAKI D+ +++ A A +AIG G+SR +F + ++ ++ Sbjct: 243 DAKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDK-GEISLNKL 301 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + S+ +L+ +V+ A Sbjct: 302 NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLA 335 >gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S D A+ +HG GE+G++Q +LL IPY+ +L SA++ +K Q + Sbjct: 65 SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S+++ + + + I P IKP GGSS G+ +K + I + + Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D+++IE ++ G E+TCG + +V + + S + Sbjct: 185 AF--EESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++P D + V+ L + +GC G+ R D++ KV LEIN PGMT S Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 362 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S A++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ G S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLIRLA 347 >gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus] gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus] gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTER 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG SSE VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSSEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIQPLFEENGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+I + P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 244 SLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345 >gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 329 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + + + D Sbjct: 5 IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S+ D I P IKP GGSS G+ +KK + I + + Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + ++++E +++G ELTCG + Y + N S + Sbjct: 185 AFEEA--REVVVEAFMEGTELTCGCYKTKDKSIVFPITEVVTHNEYFDYEAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP + VQ+L + +G +GI R D++ K+ LE+N PGMTP S Sbjct: 243 TPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus] Length = 350 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIQPLFEGNGFWISEAQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133 G+ ASAL M+K Q ++ GV P+I R P KP Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQRQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L + ++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus] Length = 350 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50 +A++ GG S E VSL+S + AL+ + + +S I + L +++ Sbjct: 4 IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63 Query: 51 -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79 PD+ F ++HG +GEDG +Q + EL+++PY Sbjct: 64 TWLLDTKHTQKIKPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133 G+ SAL M+K Q ++ GV P+IL+ + + P KP Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + GSS GI + + I L ++ ++ L I ++ + Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F+ +E KY +++ +PA +P I +V+ A L ++++G +G++R DF Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG T S +P M A G S++ELL ++ A Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345 >gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis ATCC 35310] Length = 333 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 141/326 (43%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------D---VDRSVG 43 +A++ GG SSE +VS+ S + S + + V + D +D++ Sbjct: 8 IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GE+G++Q ELL IPY+ SG+L A++ +K + Sbjct: 68 SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127 Query: 101 SSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++ GV V S+LV R D + P +KP+ GSS G+ +K + L Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 ++ D +IE ++DG EL+ G V A + + Sbjct: 188 RRAFM--ESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEVVSSNEFFDYDAKYNGQVQ 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMT 269 + PA+I KEV + + C GI R D++ V LE+N PGMT Sbjct: 246 EITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPGMT 305 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 P S P+ AG + ++L +VE+ Sbjct: 306 PTSFIPQQVRAAGLNITDVLTEIVEN 331 >gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185] Length = 324 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + +++L+E +++G ELTCG V + + + Sbjct: 185 AFGEA--EEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLEIKDVMTDIIEN 322 >gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18] Length = 332 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + ++ D A+ +HG GE+G++Q +L+++PY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SI + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D+++IE ++DG+E++ GV V A + + + Sbjct: 188 AFMQ--SDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKYNGQVEEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271 PA++ + K V + + GI R D++ + LEIN PGMT Sbjct: 246 TPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 331 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51 +L GG S+E EVSL S L+ G +++++ ++ G + + +P Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L L +P+ G AS +K+ +K + Sbjct: 68 VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAVNNA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLN--S 211 + DQ+LIE+ + EL V P FYSYE KYSS + + Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+ F E + +++A Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329 >gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 326 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAITK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++++E ++DG E+TCG V Y + N S + Sbjct: 185 AFAEA--QEVVVEAFMDGTEITCGCYKTKDRSVVFPITEVVSHNEYFDYEAKYNGASDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+ D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322 >gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 326 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAITK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++++E ++DG E+TCG V Y + N S + Sbjct: 185 AFAEA--QEVVVEAFMDGTEITCGCYKTKDKSVVFPITEVVSHNEYFDYEAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322 >gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5] gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R] Length = 324 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + S ++++IE ++ G ELTCG V + + + Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756] Length = 298 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 103/294 (35%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 SL+S A ALE AG +V ID++ + LA + FNV HG FGEDG++QA LE Sbjct: 2 SLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACLE 61 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQH 122 +PYT SG+LASAL+MDK RSK++ + G+P + R + D H Sbjct: 62 ASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADELH 121 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +KP + GSSLGI ++ + + ++ + ++L+E+ VDG+E T G++ Sbjct: 122 IARWPVFVKPNRAGSSLGISRVENAAGLAEAMAKAFAV--DSEILVEEAVDGLEATVGIV 179 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +L + P FY YE KY + ++ ++LP+ +P + +Q LA A + +G R Sbjct: 180 AGRTLPPI-VIRPHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGRD 238 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL D + LE+N PGMT S+ P A G++ +L L +V A Sbjct: 239 WGRVDFLVDAEGG-IHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291 >gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 362 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51 + ++ GG SSE EVS++S ++ F V I + S VL Sbjct: 7 VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66 Query: 52 ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D+ F ++HGN GEDG++Q + L++ P+ +LA+A+ Sbjct: 67 VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126 Query: 90 SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137 +MDK +K + V SI + +S +V KP GS Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194 S+G + + ++ + D++L+E+ + G E+ V I Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244 Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +YSYE KYS+ ++T +PA+IP + ++VQ A +Q C G++R D + Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V + E+N PG T +S++P++ AG S+ +L+ ++ A Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347 >gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 326 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S E EVS+ SG+ A AL G +V DVD ++ L P + F VLHG Sbjct: 19 VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL+ +PY + L+ K +K ++++ GV V + + Sbjct: 79 GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP +GGS+ G + Q + L S + + D L+E+ V Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAAL--VSCFAYSDSALVEEQV 196 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G EL GV+ VP Y Y +Y++ + PA++ E Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEIVPDGGVYDYAARYTAGRTEFFCPARLDPATVAEATE 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH+ +G R +SR+D + +V +LE NV PG+T S FP AA AG F Sbjct: 257 VALTAHRVLGLRDLSRTDVIV-GTDGRVTFLETNVAPGLTETSTFPMGAAAAGLDFAVAC 315 Query: 290 LWMVEDA 296 + A Sbjct: 316 RELAHQA 322 >gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01] Length = 322 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 35/321 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 ++ GG S E EVSL S + F + + +L Sbjct: 8 LIAGGRSPEHEVSLLSAHGVLEHMP---FATELAVIAKDGRWLLGEEAFAALRAKVAPIG 64 Query: 50 -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + D+ F +LHG +GEDG +Q LE+L PY +G+ ASAL MDK SK+ Sbjct: 65 RHAFPPPLDWSRYDVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKR 124 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +++ G+PV P + + + P +V KP GSS+G + + + L+ + Sbjct: 125 ILAQAGIPVVPWVALYQGERPFIPFDPPFFV-KPANTGSSIG--IRRVEHYAELEEALAE 181 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 ++ H + ++EQ + G+ E+ ++ FY YE KY+ + ++ Sbjct: 182 AFRHDQKAVVEQALSGVRELEVGILGNIFGEASPVGEVRYQAAFYDYETKYTPGRAELLI 241 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ LA A++ +G RG++R+DF +V+ EIN PG TP S++P Sbjct: 242 PAPLDPGTQETVQELALKAYRLLGIRGMARADFFLAE--GEVYLNEINTIPGFTPTSMYP 299 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 + A G + ELL +VE A Sbjct: 300 RLFAAGGLPYPELLRRLVELA 320 >gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella melaninogenica ATCC 25845] Length = 332 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 137/324 (42%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VS+ SG+ S + + + +DV D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + ++ D A+ +HG GE+G++Q +L++IPY+ G+L AL+ DK + Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V SI + + + P +KP GSS G+ +K + L Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D+++IE ++DG+E++ GV V A + + + Sbjct: 188 AFMQ--SDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKYNGQVEEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271 PA++ + K V + + GI R D++ + LEIN PGMT Sbjct: 246 TPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMTVT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG + +L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKNVLSDIVEN 329 >gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1] gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LEAF 2053A-b] Length = 360 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335] Length = 366 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 13 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 73 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 193 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 309 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351 >gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B; D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 349 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 156/344 (45%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPD---- 52 +A+L GGIS E +S+ S + ++ + V + ++ + + + PD Sbjct: 6 IALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYPDPSGK 65 Query: 53 ------------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 AF LHG GEDG +Q L+ L IP+T S Sbjct: 66 TEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGIPHTGS 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGS 137 G+LAS+L+MDK R+ + + G+PV P + + + D + S P IKP GGS Sbjct: 126 GVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTLLNLSFSYPVFIKPTLGGS 185 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----- 192 S+ + K + + + D++L+++ V G E++ GV+ Sbjct: 186 SVNTGMAKTAEEAMTLVDKIFVT--DDRVLVQKLVSGTEVSIGVLEKPEGKKRNPFPLVP 243 Query: 193 --AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 PKS+F+ +E KY+ S + PA + ++ K +Q H+ +GC+G SR+DF+ Sbjct: 244 TEIRPKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGYSRTDFII 303 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE N PGMT S+ P+ A G + +++ W++E Sbjct: 304 --SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLE 345 >gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM] gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM] gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 360 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ SG A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L+ P+ +LA+A Sbjct: 67 VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G V + ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VG--VNHVTNAEEYAAALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P DI V+ A ++ C G++R D + P Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP-D 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ +++ Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343 >gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135] gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism] gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 325 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40 +A++ GG SSE VS+ S + S ++ + + +++ + Sbjct: 5 IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + PD A+ +HG GE+G++Q ELL IPY+ +L SAL+ K Q + Sbjct: 65 SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+ D I P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPALEA 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 + D ++IE ++DGIEL G +V + T + Sbjct: 185 AF--KESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEVVSQNEFFDYNAKYKGEVTEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 243 TPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++ED Sbjct: 302 PQQVRAAGLDIKDVMTDIIED 322 >gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 360 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87] Length = 347 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 42/336 (12%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52 V+ GG SSE VSL S + + + + ++ I +D++ + D Sbjct: 5 GVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWIP 64 Query: 53 -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 F VLHG GEDG VQ +LEL+ I Y +++S Sbjct: 65 QATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMSS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 A+SMDK + +P + N Q IS P+++KP GSS G+ Sbjct: 125 AISMDKEIMHILCDEANIPCADYVCLKANEENPSFEMIQEKISLPWIVKPCNAGSSYGVH 184 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFY 200 ++ + + ++ ++L+E+ ++G E+ C VMG+ + + + Sbjct: 185 KVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQISGGIF 244 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +E KY + + PA+I + + + + LA ++A+ C G++R D P +V Sbjct: 245 DFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTPQK-EVILN 303 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG T S +P M AG F +L+ +++ A Sbjct: 304 ELNTIPGFTATSRYPSMMKEAGIEFGDLIDKLIDLA 339 >gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners LactinV 09V1-c] Length = 360 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+R A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011] Length = 326 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 150/321 (46%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 ++++ GG SSE VSL S + S ++ + + + +++ D Sbjct: 6 VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDGL+Q ELL IPY+ G+LASAL+ DK Q + Sbjct: 66 SFEWNGEVITFDFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCNQYL 125 Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ V S++ + +D I P IKP GGSS G+ + K++ I +L+ Sbjct: 126 KGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPAILK 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + ++LIE ++DG E+TCG ++ V + + + Sbjct: 186 AFH--ESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEVVTHNEFFDYDAKYNGQVEEI 243 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ K VQ L + IGC GI R DF+ + LE+N PGMTP S Sbjct: 244 TPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITDKK-VINLLEVNTTPGMTPTSFI 302 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 303 PQQVRAAGLEIQDVMTDIIEN 323 >gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571] gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075] gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463] Length = 360 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + ++ GG SSE EVS+ S + A++ F V I + Sbjct: 7 VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66 Query: 50 --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG++Q + L+ P+ +LA+A+ Sbjct: 67 VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF D + +KP GSS Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNADEYAAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PA +P +I V+R A ++ C G++R D + P Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP-G 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 KV E+N PG T +S++P++ AG + EL+ ++E Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343 >gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492] Length = 326 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E ++DG E+TCG V Y + N S + Sbjct: 185 AFAEA--QEVLVEAFMDGTEITCGCYKTKDKSVVFPITEVVSHNEYFDYEAKYNGASDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322 >gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora] Length = 334 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 53/330 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV++GG S E +VS+S+G A + ++ + + + +I + R Sbjct: 11 IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +K DLA+ +HGN GE+G++Q ++L +PYT G AS+L Sbjct: 71 NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + + P +KP GGSS+ +K + Sbjct: 131 TANNGTFSF-----------------DADALLREFELPVFVKPASGGSSVATTKVKSREQ 173 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY-EL 204 + + + + Q+L+E+++ G E CGV+ DA + +P D + Sbjct: 174 VVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEVIPHGDSEYFDYN 233 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 + +S+ V PA++ ++ ++ ++ + + CRG+ R D+ +D +++++LE+N Sbjct: 234 AKYNGSSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYFLEVNT 293 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG TP S+ P+ A AG S EL ++E Sbjct: 294 IPGQTPESMVPQQARAAGISIAELYHMVIE 323 >gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 335 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 156/306 (50%), Gaps = 17/306 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G++V + DVD S+ + +PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE + +P+ S + + L+ +K +K ++ S GV + + + Sbjct: 67 GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + + ++ +G +L++EQ + Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAM--VDAFAYGQRLMVEQRI 184 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG ++ V+ Y Y+ +Y++ + + +PA+ +I ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEISTDGGRYDYDARYTTDETEYFVPARFSDEILADLQA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY-SFREL 288 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF +L Sbjct: 245 AAVEAHTTLGLRDLSRIDFVVDDA-GTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQL 303 Query: 289 LLWMVE 294 +++ Sbjct: 304 CADIID 309 >gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 365 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 152/332 (45%), Gaps = 37/332 (11%) Query: 1 MAVLMGGISSEREVSLSSG---KACASALEDAGFKVSQIDVDRSVGL----------VLA 47 +AV+ GG+SSE +VSL+S +A A+AL G +V +D Sbjct: 36 IAVIGGGVSSEHDVSLASSEGTRAAAAAL---GHRVHFFLIDSDGEWSVDGVPGTTAAWE 92 Query: 48 HLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 L+ DLA ++HG GEDG++Q LE + + Y SG+L+SA+ +DK +K V + GV Sbjct: 93 KLRSCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVR 152 Query: 107 VCPSI-------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 P + + I P +KPL+GGSS GI + + ++ Sbjct: 153 TAPGLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLADA 212 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV------PKSDFYSYELKYS 207 + ++ +LIE V G E+ GV+ V K +F+S E KYS Sbjct: 213 VKLAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYS 272 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267 S + ++PA I + ++ A A+GCRG++R DF D EIN PG Sbjct: 273 STETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVD-DDGTATLNEINTLPG 331 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 T S P + A AG ++ L+ ++E A Sbjct: 332 FTSHSQVPRIWAAAGVNYEGLVAIIIETALAR 363 >gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 351 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 98/344 (28%), Positives = 152/344 (44%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV GG S+E +S+ +G L G V I + + G V Sbjct: 4 IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + L D+AF LHG GEDG +Q LE+L IPYT SG+L Sbjct: 64 SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123 Query: 86 ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 ASA++MDK R+ Q+ + + + + P +KP++GGS Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190 S+ + I + + L +++ + ++ GIE++CGV+ Sbjct: 184 SVSVYKITNREQLKEKLALIF--ESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +F+ +E KY S + PA+I K VQ LA AH+++GC G SR+DF+ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFII 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 ++ + LE N PGMT S+ P+ A AG S E+ ++E Sbjct: 302 --VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343 >gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16] Length = 324 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG +SE VSL S + S ++ + + ++ VDR+ Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64 Query: 44 LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + S ++++IE ++ G ELTCG V + + + Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN] Length = 377 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG SSE +VS S ++ + V + L+ Sbjct: 8 IALLFGGNSSEHDVSKRSAHNIYDGMDKDKYNVKVFMFTKDGILLDNAASQRIFDGEPED 67 Query: 46 ------------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L L+ D F V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVKEAYATMDLDSPLAPLEALRTAGPIDFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I ASALS DK +K+++ GV P + ++ + +KP K GS Sbjct: 128 ITASALSFDKDYTKRILDLAGVRNTPYVLVTPENRDQYDWQAIENELGTTVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI ++ +Q L + +++ + + + + V Sbjct: 188 SVGIHKVENEQEYQAALDDAFIYDYKVLVEQAINNPREVEISILGNEKPIASKLGGVRVP 247 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 ++ + LP +P + +E+ +A A++A+ +G++R DFL D Sbjct: 248 KGDAFYDYENKFVDASGVVFDLPVILPEKLTREITEMALKAYKALDMKGLARIDFLVDE- 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E N PG T +S++P+M + +G + L+ ++E Sbjct: 307 NDVPYLGEPNTLPGFTNISLYPQMWSVSGIDYSTLIDKLIEL 348 >gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM 20098] Length = 377 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 76/369 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S +A++ F V + + ++ ++ P Sbjct: 6 IMVLYGGRADEHSISCISTAGVLNAIDAERFDVVPVGITKTGQWIVGGEDPRSWSLDDGT 65 Query: 52 -----------------------------------------DLAFNVLHGNFGEDGLVQA 70 D F VLHG +GEDG VQ Sbjct: 66 LPEVVATADSRAVTLDVSRGQDGFFADDPGQPDHVISLGHIDAVFPVLHGVYGEDGTVQG 125 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122 +LE++ +PY G+ ASA MDK +K V+++ G+P P I+V+ + Sbjct: 126 LLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIMVDARHATGESVYDEVKKA 185 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-----NHGDQLLIEQYVDGIEL 177 ++ P +KP + GSS G+ +++ + + H ++L+EQ +D E+ Sbjct: 186 KLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAALEAAVAEAGKHDWKVLVEQGIDAREI 245 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIYK 225 C V+ A D E + P + + +PA +P+ + + Sbjct: 246 ECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYDFDSKYMDSSASHVEVPANLPVSVLE 305 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +V+ +A A A+ G+SR D P V EIN PG TP+S++P+ +G + Sbjct: 306 DVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDASGIGY 364 Query: 286 RELLLWMVE 294 EL+ ++E Sbjct: 365 TELITRLIE 373 >gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 326 Score = 145 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L + D A+ +HG GEDG +Q ++L IPY+ G+LA++L+ DK Q + Sbjct: 65 SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV + S+ + D I P IKP GGSS G+ + + I + + Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E ++DG E+TCG V + Y + N S + Sbjct: 185 AFAEA--QEVLVEAFMDGTEITCGCYKTKDKSVVFPITEVVSYNEYFDYEAKYNGASDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I D+ + VQ L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322 >gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445] Length = 353 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + VL GG S+ +VS+ S +AL+ A ++ + V R+ +L+ Sbjct: 8 IVVLFGGRSAGHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 K D+ F VLHG GEDG VQ + ++ +P G Sbjct: 68 AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 I SA ++DK +K++V+ G+ S+ + R + + + + P IKP + GSS+ Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192 G V K S + + D+LL E+++ E+ CGV+ + Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 A + + + +PA++P + E++ +A A + +GC ++R DF Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAARAFRVLGCDSMARVDFFVTA 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R++ EIN PG T +S++ ++ A +G S+ E++ +V Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345 >gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1] Length = 380 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 140/372 (37%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------------------ILVN 114 E++++PY G+LASA MDK +KQ+ + G+ V P Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGINVAPGIALDARKFASDAKNRFDAYAEE 185 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222 E+ C V+ + + + P +PA +P + Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D +V EIN PG TP+S++P+ G Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVT-KDGRVILNEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis 409-05] Length = 380 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 139/372 (37%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------------------PVCPSILVN 114 E++++PY G+LASA MDK +KQ+ + G+ + Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDAENRFDAYAEE 185 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222 E+ C V+ + + + P +PA +P + Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D +V EIN PG TP+S++P+ G Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVT-KDGRVILNEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27] Length = 319 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 151/323 (46%), Gaps = 35/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG+S E EVSL S + + F + R +L Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHMP---FPTDLAVIARDGRWLLGEKALAALEAKAAPEG 61 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+ Sbjct: 62 EHPFPPPLPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 121 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ GVPV P + V + PP+ +KP GSS+GI +++ Q + L + Sbjct: 122 VLAQAGVPVVPWVAVRKGEPSM-VPFDPPFFVKPANTGSSVGISRVERFQDLEAALALAF 180 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + ++ ++E+ + + E+ ++ FY YE KY+ + ++ Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ LA A++ +G RG++R DF +V+ E+N PG TP S++P Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GEVYLNELNTIPGFTPTSMYP 296 Query: 276 EMAAYAGYSFRELLLWMVEDASC 298 + G ++ ELL +VE A Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319 >gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners UPII 143-D] Length = 360 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47 + ++ GG SSE EVS+ SG+ A++ + V + + D VL Sbjct: 7 VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66 Query: 48 ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + D+ F ++HGN GEDG +Q +L +L+ P+ +LA+A+ Sbjct: 67 IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + RF + + +KP GSS Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +GI + L + ++ + D++L+E+ + G E+ V+G+ V+ + + Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244 Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + N +PA +P +I + V+ A + A C G++R D + Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 KV + E+N PG T +S++P++ G S+ EL+ ++ A Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345 >gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343] gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC 9343] Length = 324 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q +++ IPY+ G+LA+A++ DK Q + Sbjct: 65 SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S D I P IKP GGSS G+ +K + I + + Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + S ++++IE ++ G ELTCG V + + + Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ + VQ L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002] gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 353 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 148/341 (43%), Gaps = 45/341 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48 + +L GG S E +VS+ S A A A +++ +DR+ VL Sbjct: 6 VGLLFGGKSGEHDVSIVSAAAIAKAFAQEDNPDKYELLPFYIDRNGIWHDPEISQQVLTA 65 Query: 49 LK---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 K D F ++HG GEDG +Q +L L+E P+ S +L S Sbjct: 66 GKALPVETVDPASRWQFPPAAPSIDAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGS 125 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKG 135 A MDK+ K V + G+ + + + + + P +KP Sbjct: 126 AAGMDKLAMKMVFAQAGLAQVDYVGVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANL 185 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GSS+GI ++ + L ++ ++ + +E V Sbjct: 186 GSSVGISKVRTRDELEKALDLAAEYDRRLIVEAGVTAREVECAVLGNDQPKASVVGEIRF 245 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 SDFY YE KY+ S+ +PA+IP I +++Q LA A QA+ CRGI+R DF + ++ Sbjct: 246 DSDFYDYETKYTDGKSSMHIPAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEATQ 305 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 V EIN PG T +S++P++ +G F +L+ +V+ A Sbjct: 306 TVLINEINTLPGFTALSMYPQLWQQSGVPFPQLVDRLVQFA 346 >gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34] Length = 331 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG S+E EVSL S L+ +G +++++ ++ G + A + Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAVNNA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY--SSLNS 211 + DQ+LIE+ + EL V P FYSYE KY S+++ Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G +F + + +++A Sbjct: 305 SMFPKMLEHNGQTFADFIEQAIKNA 329 >gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo] gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia afzelii ACA-1] Length = 361 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 163/342 (47%), Gaps = 50/342 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I ++ + + ++ P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197 I V + I + ++ + ++IE++++ E+ C ++G+ + E+ V Sbjct: 187 INVAYSENQIESCIEEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244 Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY Y+ KY + +PA + + ++ AFL ++ + RG++R DF + S Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ EIN PG T +S+F +M ++ G F++L+ +++ A Sbjct: 305 GTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346 >gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21] Length = 333 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 30/326 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR-SV 42 +A++ GG + E E+SL S L+ + F V +I +V+R Sbjct: 5 IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64 Query: 43 GLVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK--- 97 L L +K DLAF ++HG+ GEDG +Q L+++ + YT L SAL+M+K +K Sbjct: 65 TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124 Query: 98 ---QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + ++ ++ + PY +KP GGSS+G+ +K+ + + Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQLDELSSAI 184 Query: 155 LQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLN 210 ++ + N G Q+L+E++V G E + G+ + + +F+ +E KY Sbjct: 185 DRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEVITTREFFDFEAKYIPGL 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + PA + + V++L + + C+G+ R DF + + K +++EIN PG T Sbjct: 245 TKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINTIPGQTE 304 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S P+ AG + ++E A Sbjct: 305 TSFIPQQVRAAGLQETDFYTELIEQA 330 >gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum] Length = 355 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 142/347 (40%), Gaps = 53/347 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+++GG S E VSL S + + +++ I + + Sbjct: 7 AIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTWLC 66 Query: 46 --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 ++ D F +LHG GEDG +Q + EL IPY Sbjct: 67 EAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131 G + A+ MDK + V+ G+ P + V ++ + P IK Sbjct: 127 VGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189 P GSS GI ++ + + + ++++E ++G E+ VMG+ L Sbjct: 187 PANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGS 246 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + F+ YE KY ++S PA+I +++E + +A A++A+ C+G++R D Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMF 306 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 P + E+N PG T S +P M AG F EL+ +V A Sbjct: 307 VTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism] Length = 324 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE EVSL S + S ++ + + +++ D Sbjct: 5 IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L A + D A+ +HG GEDG +Q ++L IPY+ G+LA+AL+ DK Q + Sbjct: 65 SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ + + I + + Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214 + + ++L+E ++DG+E+TCG + V Y + N S + Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKNKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+IP ++ VQ+L + +G GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A ++++ ++E+ Sbjct: 302 PQQVRAANLESKDVMTDIIEN 322 >gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755] Length = 329 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 147/323 (45%), Gaps = 31/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQ-----------------IDVDRSV 42 +AV MGG S E E+SL SG+ L ++ ++V + I +D+S Sbjct: 5 IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64 Query: 43 GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V+ + +P D FN +HG GEDGL Q L+ LEIP T +AL+ +K V Sbjct: 65 FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + G+ +I +N+ + I P +K + GSS GI +K I L Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTALE 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTH 213 S D+++IE ++DG E++ GV+ + + S Sbjct: 185 HSF--KEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEIISENEFFDFEAKYLGKSKE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA I K+V+ A + + +G++RS+F+F + + +LE N PG+T SI Sbjct: 243 ITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIF--HNNEPHFLECNACPGLTEASI 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S ++L VE A Sbjct: 301 LPQQAKAAGISLQDLFTNAVEVA 323 >gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 327 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 151/326 (46%), Gaps = 34/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +AV+MGG + E +SL SGK L F+ ++ + D Sbjct: 4 IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 SV + ++ D FN +HG GEDGL+QA ELL IPYT + ++ +K ++ Sbjct: 64 SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ SI +N+ + + I P +KP + GSSLGI + ++ + + + Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEETDLFNAVKK 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214 + ++++IE +++G E++ GV + + S S + Sbjct: 184 AF--KEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEIISQNDFFDFESKYSGKSQEI 241 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PAK+ I ++Q +A + + GISRS+++ ++ + ++LEIN PG++ SIF Sbjct: 242 TPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSEESIF 299 Query: 275 PEMAAYAGYS----FRELLLWMVEDA 296 P+ AG S F+ + + +E A Sbjct: 300 PKQLKTAGISLSYFFKNCINYSIEKA 325 >gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912] Length = 397 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 87/367 (23%), Positives = 141/367 (38%), Gaps = 76/367 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------VLAHLK--- 50 +AV+ GG S E EVS+ + + L + V + +D+ L K Sbjct: 5 IAVIFGGRSVEHEVSIVTAQQIMYQLRRDLYDVMPLYIDKEGAWWTGDVLAKLESFKAAN 64 Query: 51 ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71 PD+A HG +GEDG +Q + Sbjct: 65 RNAALAQAARVIVVPTPGGGVIEDPQALRGLFRKPRRWTPDVAILATHGTYGEDGCLQGL 124 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122 LE+ IPYT G+L SA+ MDK+ K V + G+PV I ++R + Sbjct: 125 LEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNYIWIHRDEWHEHPDEVADRVER 184 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----------GDQLLIEQYV 172 + P +KP GSS+GI + + + ++ ++ ++ Sbjct: 185 ELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAAGYDRRLLIEQGVVSPREINCSVLA 244 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG +L + + ++ K + PA +P + + VQ LA Sbjct: 245 DGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTGRRI---PADLPDGVTEAVQELAR 301 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +AI RG++R DFL P ++ EIN PG S+ + +G SF +LL + Sbjct: 302 RAFRAIQARGVARVDFLLSP-DGSIYVNEINTIPG----SLSFYLWEPSGVSFPDLLDKL 356 Query: 293 VEDASCL 299 +EDA Sbjct: 357 IEDALAD 363 >gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17] gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 331 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43 +A++ GG SSE +VSL S + S + + V +D +D++ Sbjct: 8 IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67 Query: 44 LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + D A+ +HG GE+G++Q +L+ +PY+ SG+L AL+ +K + Sbjct: 68 SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 S GV V S + + + + P +KP GSS G+ +K+ + L Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPALRV 187 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + D++++E ++DG+E++ G+ V A + + + Sbjct: 188 AFM--ESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEVVTSNEFFDYDAKYNGQVKEI 245 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPV 271 PA++ + +V ++ + GI R D++ S V LEIN PGMT Sbjct: 246 TPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMTAT 305 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG +E+L +VE+ Sbjct: 306 SFIPQQVRAAGLDIKEVLTEIVEN 329 >gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2] Length = 384 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 138/355 (38%), Gaps = 64/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV GG S E E+S+ S + +AL++ +++ + + + + Sbjct: 5 IAVAFGGRSVEHEISVLSAQQVMAALDEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64 Query: 50 --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77 + DL F VLHG GEDG Q L+ + I Sbjct: 65 EFIADHTSVALIRRDAHTYLIPSRRKLFARDKEVDLVFPVLHGTNGEDGTFQGYLKTIGI 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 PY +LA A+ DK+ KQV+ + + + P +IK Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLD 188 P GSS+GI V D + ++++ ++H ++ + E+ V Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH-KVVIEKVIEPLREINASVLGDEDGCRCS 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCR 241 E V + + SY+ KYS + + PA++ + +EV+ +A A +A+ Sbjct: 244 TLEEVVKQDEILSYDNKYSGQGKSKGMLSTSRKLPAELSDEQAEEVRTMAMDAFRALNAA 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DFL S ++ EIN PG S+ + G SF LL ++ A Sbjct: 304 GVVRIDFLMHADSSALYVNEINTIPG----SLSFYLWEKEGLSFPALLDELISLA 354 >gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328] Length = 350 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 146/334 (43%), Gaps = 44/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S+E EVS++S + + L + V+ I V R+ + Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66 Query: 46 -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + P+ + F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146 MDK + + +P +++ + + I +KP GSS+G++ + Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203 ++ + + + + ++L+E+ + G EL VMG+ + + +F+ Y+ Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + + P + + + + LA ++ + G SR D +++ EIN Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302 Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 PG+TP S+FP + S E+ ++ A Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 378 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + ++ ++ P Sbjct: 6 IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 66 PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 ++ +PY G+LASA MDK +K ++++ G+PV P I ++ D+ Sbjct: 126 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARDYDAACAFAANGETMLA 185 Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G+ ++++ + +H ++L+EQ +D E Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + D + P +PA +P + Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + V+ A A +A+ G+SR D KV EIN PG TP+S++P+ G S Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLISTLIE 374 >gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14] gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14] Length = 331 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG S+E EVSL S L+ G +++++ ++ G + A + Sbjct: 8 LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++L + +P+ G AS +K+ +K + Sbjct: 68 VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + +K GSS+G + +Q + + + Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAVNNA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY--SSLNS 211 + DQ+LIE+ + EL V P FYSYE KY S+++ Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + D + ++ A A + + +SR DF ++ EIN PGMTP+ Sbjct: 246 TMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+ F E + ++ A Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKSA 329 >gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN] Length = 377 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S ++ + VS + L+ Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVKEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ + + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + ++ + + ++++ + + + + + Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348 >gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716] Length = 377 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S ++ + VS + L+ Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ + + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + ++ + + ++++ + + + + + Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348 >gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956] gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 377 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S ++ + VS + L+ Sbjct: 8 VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + D + V+HGN GEDG VQ + LL+ PY SG Sbjct: 68 QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137 I +SA+S DK +K++++ G+ + + + +KP K GS Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+GI + ++ + + ++++ + + + + + Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247 Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + + + LP + D+ KE+ +A A++A+G +G++R DFL D Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + E N PG T +S++P+M +G S+ EL+ +++ Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348 >gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565] Length = 324 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG +SE VSL S + S ++ + + +++ D Sbjct: 5 IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GEDG +Q ++L IPY+ G+LA+A++ DK Q + Sbjct: 65 SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 + GV + S + D I P IKP GGSS G+ +K + I +++ Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + +++++E +++G ELTCG V + + + Sbjct: 185 AFGEA--EEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYNGQVDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I ++ VQ+L + +GC GI R D++ K+ LE+N PGMT S Sbjct: 243 TPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ AG ++++ ++E+ Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322 >gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989] Length = 358 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 44/338 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 V+ GG SSE VSL S + + ++++ I ++++ L + Sbjct: 14 GVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHDTWEN 73 Query: 49 -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 ++ D F VLHG GEDGL+Q +LEL+ I Y ++ Sbjct: 74 EETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDVM 133 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLG 140 +SA+SMDK + +P I + Q I P++IKP GSS G Sbjct: 134 SSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQIQEKIELPWIIKPCNAGSSYG 193 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSD 198 + + + + ++ ++L+E+ + G E+ C VMG+ + + Sbjct: 194 VHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSIDEIEITGG 253 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY + PA+I +KE Q LA + A+ C G++R D ++V Sbjct: 254 FFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFVTE-DKEVI 312 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG+T S +P M AG F +L+ ++E A Sbjct: 313 LNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350 >gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM] Length = 318 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 33/323 (10%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48 MGG S E +VSL SG+ +L+ + V ++ V + L Sbjct: 1 MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L+ D+ FN++HG GE+G++QA + + YT SAL+ +K + V++ Sbjct: 61 PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120 Query: 104 GVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 G+P S + + + P +KP + GSSLGI +K+ L ++ Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAALEKAF- 179 Query: 160 WNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 D++L+E ++DG+E++ G+ + +P+++F+ YE K S ++P Sbjct: 180 -LEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQEIIP 237 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A++ V+ +A A+ +G +G SRS+++ + + LE+N PG +P SI P+ Sbjct: 238 ARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILPQ 295 Query: 277 MAAYAGYSFRELLLWMVEDASCL 299 A G S +L VE A Sbjct: 296 QARIYGISITDLCGNEVEKALAK 318 >gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna BVS033A4] Length = 350 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 146/334 (43%), Gaps = 44/334 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S+E EVS++S + + L + V+ I V R+ + Sbjct: 7 VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66 Query: 46 -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + P+ + F +HG++GEDG +Q +++L++P+ +L SAL Sbjct: 67 DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146 MDK + + +P +++ + + I +KP GSS+G++ + Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203 ++ + + + + ++L+E+ + G EL VMG+ + + +F+ Y+ Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY+ + + P + + + + LA ++ + G SR D +++ EIN Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302 Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296 PG+TP S+FP + S E+ ++ A Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 348 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE +++L S + L +K+ + VD+ Sbjct: 6 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65 Query: 41 ----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L L D + +HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G+ Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200 + + + + + +++L+E+ + G E+ ++G+ L ++ F Sbjct: 186 KAENIKELLK--FGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHTFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D K + Sbjct: 244 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 301 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F E+L ++E+ Sbjct: 302 EINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEE 337 >gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278] gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278] Length = 367 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 136/352 (38%), Gaps = 56/352 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47 +A+L GG S+E +VS +S +L+ + ++ I + VLA Sbjct: 8 VAILFGGRSAEHDVSRASAANIFRSLDAGRYALTLIGITHDGRWVLADAVNDATSAALIV 67 Query: 48 ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 L D+ F VLHG GEDG VQ LEL ++ Y Sbjct: 68 PADGPQIVLLPAGRGRALAIDGSAAAPRELAFDVIFPVLHGPNGEDGTVQGALELADVAY 127 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----VIKPLK 134 +L SA +MDK +K+++ G+P+ P + + + S + +KP Sbjct: 128 VGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAASPVSYDDAARAVGSSELFVKPAN 187 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------ 188 GSS+GI + + ++ L+ E+ C V+ A Sbjct: 188 LGSSVGISKTRDAAEFEAACQLALRFDR-KILIERCIAPVREIECAVLEHADGQIKASEL 246 Query: 189 -VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 A + + + +PA++ + + ++++A A+ C ++R D Sbjct: 247 GEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPAVAQRIRKMATEVFGALCCESLARVD 306 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 F +++ E+N PG T +S++P+M AG L+ +V A Sbjct: 307 FFV--RGDEIYVNEVNTLPGFTNISMYPKMWEAAGLPQPALMDELVAHALAR 356 >gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018] gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019] Length = 381 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 141/372 (37%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA++++ F++ +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFRMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAETRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------------------PVCPSILVN 114 E++++PY G+LASA MDK +KQ+ + G+ + Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFASDAANHFDAYANE 185 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + + P +KP + GSS G+ ++ + L + H ++L+EQ +D Sbjct: 186 ILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVYEASKHDWRVLVEQGIDA 245 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222 E+ C V+ D + + P +PA +P + Sbjct: 246 REIECAVLAARDGDEPQASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPEE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V+ A A +A RG+SR D P V EIN PG TP+S++P+ G Sbjct: 306 TLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYSDLITKLIE 376 >gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145] Length = 330 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 153/328 (46%), Gaps = 35/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 +A++ GG + E +SL+S K L+ + + V QI +D Sbjct: 5 IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64 Query: 43 GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + K D AF ++HG GEDG +Q ++L IPYT SA++M+K +KQ+V Sbjct: 65 SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124 Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S + V L + + + + P +KP GGSS+G+ + + + + Sbjct: 125 SAVPDLNIAKSVQLFSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGMSKVNEWDDLDKAVQ 184 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNST 212 ++ G ++LIE+++ G E T G ++ + +F+ +E KY++ + Sbjct: 185 RAF--AEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTKEFFDFEAKYTAGLTN 242 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V PA++ ++ + + + + + C+G+ R DF+ ++ +++E+N PG + S Sbjct: 243 EVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFIL-KDNKDFYFIEVNTIPGQSENS 301 Query: 273 IFPEMAAYAGYS----FRELLLWMVEDA 296 I P+ AG + + L+ ++ A Sbjct: 302 IIPQQVRAAGLTLTYFYGNLIDEALKTA 329 >gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 333 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 17/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL+S + AL G V +DVD SV L PD F +HG+ Sbjct: 9 VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------- 113 GEDG ++ +L+L +PY + + L+ DK +K V+ + GV SI Sbjct: 69 GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128 Query: 114 -NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ + P V+KP +GGS+LG+ ++++ + L + + + L+EQYV Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHAL--VTCFAYDTVALVEQYV 186 Query: 173 DGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G EL V+ D P + Y +Y++ + + +PA+I Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIRPVDGMFDYAARYTAGMTEYHVPARITETARDRAV 246 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A AHQA+G R +SR+D + ++ LE NV PGMTP S+ P AA G L Sbjct: 247 DVALRAHQALGLRDLSRTDVIVTADDEVLY-LETNVAPGMTPTSLLPMAAAEVGIDLGTL 305 Query: 289 LLWMVEDASCL 299 ++ A+ Sbjct: 306 CRDLLVRAATR 316 >gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine gamma proteobacterium HTCC2080] Length = 309 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 147/292 (50%), Gaps = 6/292 (2%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 AVLMGG ++ERE+SL SG+ AS LE AG V++ID D FN+LHG Sbjct: 12 AVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPA-VEQWADQLSDIDFVFNLLHGP 70 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S G+P L+ T S Sbjct: 71 GGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDWSD 130 Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +KP GSS+G+ + + ++ ++ G ++ E +V G E T Sbjct: 131 LIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEYTVS 188 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD +L P S+FY ++ KY S N+ P+ + E+ LA A A+ Sbjct: 189 ILGDRALPAI-RIEPASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYAVDA 247 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 R D + D S LE+N PGMT S+ P A + + L + Sbjct: 248 AVWGRVDVMRDI-SGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEI 298 >gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425] gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425] Length = 349 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 148/348 (42%), Gaps = 58/348 (16%) Query: 1 MAVLMGGISSEREVS----------LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-- 48 + +L GG S E EVS L++ + V + ++ Sbjct: 5 VGLLFGGCSGEHEVSIASARAIARALTTAPN------SDRYTVLPFYIQKNGFWQGEEIA 58 Query: 49 ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 D+ F +LHG GEDG VQ +L+L++ P+ Sbjct: 59 QQVLESGVPLADPVEGQPTQLWSFPHAAETVDVWFPILHGPNGEDGTVQGLLKLMQRPWV 118 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPY 128 SG+LASA MDK+ K + ++ G+P + VNR + S + P Sbjct: 119 GSGVLASAAGMDKIMMKTIFAAAGLPQVKYLAVNRSQLWSDPCVYTKLCDRIDTTLGYPC 178 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP GSS+GI ++ + L ++S++ + +E + Sbjct: 179 FVKPANLGSSVGITKVRNRPQLETALENAASYDRRLVVETGVIAREVECSVLGNDHPRAS 238 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 V SDFY YE KY+ ++ ++PA +P I ++Q +A A AI G++R DF Sbjct: 239 VVGEITYSSDFYDYETKYTDGRASLIIPADLPPAIVTQIQEMALTAFTAIDAAGLARVDF 298 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + ++ EIN PG T S++P++ A +G +F +L+ +++ A Sbjct: 299 FYLESTGEILINEINTLPGFTAFSMYPQLWAASGVTFPDLVDQLIQFA 346 >gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712] Length = 326 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 30/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ----------------IDVDRSVGL 44 + V+ GG SSE EVS+ SG S ++ + VD++ Sbjct: 5 VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDFS 64 Query: 45 VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D A+ +HGN GE+G++Q L+++ +PY+ L A++ DK ++ Sbjct: 65 FEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNYLN 124 Query: 102 SCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+ I++ R + + P IKP GSS G+ +K + + Sbjct: 125 AFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVKTAADFDAAVEGA 184 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 ++L+E ++DGIE TCG+ + VPK +F+ YE KY + S + Sbjct: 185 FKMC--REILVESFIDGIEFTCGLYKVGDKKVVMPVAEVVPKKEFFDYEAKYDAKMSDEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 +P + +I +Q +A + + C GI R D ++ LE+N PGMT S Sbjct: 243 IPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFV--RGEEIIMLEVNTTPGMTANSFV 300 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+M G R+++ ++E+ Sbjct: 301 PKMVRVMGLPLRDVITGIIEE 321 >gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803] gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803] Length = 326 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 153/323 (47%), Gaps = 32/323 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+ MGG SSE +S++SG L+ ++ ++ + + V+A Sbjct: 5 IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64 Query: 49 --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D FN +HG GE+GL+QA LEL+ IP T SAL+ +K V+ Sbjct: 65 TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ + +N+ + I P +K + GSS G+ +K + I Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEIISAAKT 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213 + D+ +IE ++DG E++ GV+ +P +F+ YE K S Sbjct: 185 AF--TEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEIIPDGEFFDYEAK-YLGKSQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + K+VQ +A + ++ + +G+SRS+F+F + ++E+N PG++ SI Sbjct: 242 ITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFHE--GEPHFIEMNTNPGISQASI 299 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P+ A AG S ++L +E A Sbjct: 300 LPQQAEKAGISLKDLFGSTIEAA 322 >gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM 7454] Length = 352 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 142/336 (42%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE +++L S + L +K+ + VD+ Sbjct: 10 LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69 Query: 41 ----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L L D + +HG +GEDG +Q L+ +++ Y +G+L+S+ Sbjct: 70 CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + T + Q I P ++KP GSS+G+ Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 189 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200 + + + + + +++L+E+ + G E+ V+G+ L ++ F Sbjct: 190 KAENIEELLK--FGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHTFL 247 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ LP I ++ KE+ A ++A GC+G +R D K + Sbjct: 248 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 305 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F E+L ++E+ Sbjct: 306 EINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEE 341 >gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5] Length = 332 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 33/324 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKP-----DLA 54 +AVLMGG SSE ++SL+SG ++L+ ++V + + + V+ + D + Sbjct: 6 IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65 Query: 55 F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 F N +HG GEDG +QA LELL IP T SA++ +K + V+ Sbjct: 66 FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125 Query: 101 SSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 SS GVP+ S+ F + P +KP + GSS G+ + K+ + Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNS 211 L +++ Q+LIE ++ G E++ GV A + S S Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEIVPDGDFFSLEAKYSGKS 243 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 ++PA++ EVQ L + + +GI R DF+F K ++E+N PG++ Sbjct: 244 QEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFHE--GKPHFVEVNTNPGLSKE 301 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 SI P AG S E+ +E Sbjct: 302 SIIPREFKAAGLSLAEVFGEAIEH 325 >gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 350 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 83/344 (24%), Positives = 151/344 (43%), Gaps = 51/344 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG + E +VS +S + + L+ ++V + + R+ Sbjct: 8 VAVVFGGRNGEYDVSCASAMSVLTHLDRDRYEVVPVRITRAGAWVVGTDTDDPAALDAER 67 Query: 45 -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 +LA + D+ F V+HG +GEDG +Q +LELL +PY Sbjct: 68 LTALTPEPGGERERRPGDGLGEAILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVG 127 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGS 137 +G+LASA MDK +K ++ + G+PV + + + + + P +KP + GS Sbjct: 128 NGVLASATGMDKATTKTLLRAAGLPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGS 187 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEI 192 SLG+ + + + + ++L+E+ V G E+ V+ EI Sbjct: 188 SLGVTRVGDWSELEAAVKTAR--EFDTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEI 245 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 V ++ + ++ +PA +P+ I ++ LA +A+GC G+ R DF Sbjct: 246 RVADTERFFDYDTKYGGDAVFDIPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLRG 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG T S +P++ G + ELL ++ A Sbjct: 306 GT-EPVVNEVNTLPGFTAHSQYPQIWRATGLEYPELLDSLIRTA 348 >gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245] gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245] Length = 363 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 158/351 (45%), Gaps = 57/351 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A+L GG S+E E+S+ S ++ + A++ ++V + + Sbjct: 6 IALLFGGKSTEHEISIISARSISGAIDRERYRVVPVYITHEGAWFSGDSAAEILSLDLSS 65 Query: 46 -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 D+ F LHG++GEDG VQ +L+ + Sbjct: 66 IMRKSSVGNTETLLREMIRNSAEKPFDFNFRAAGIDVVFIALHGSYGEDGRVQGLLDTMG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127 IPYT G+ ASA++MDK +K + GV PSI ++ + + P Sbjct: 126 IPYTGCGVSASAIAMDKALTKLCAADAGVATAPSITLDADSYLADPEPVHELVDSTFGYP 185 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI + ++P L + ++ ++L+E V G E+ V+G+ Sbjct: 186 LFVKPASLGSSVGISKVHLPAALPEALKVAC--SYDRKILVEAAVSGKEIEVAVLGNDRP 243 Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + P SDFY ++ KY + +PA++P + V+ A ++A+GCRG+SR Sbjct: 244 VASVPGEVEPGSDFYDFQDKYIHNTAKTFIPARLPDKLLDSVRCSAITVYKALGCRGMSR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF + + + EIN PG T +S++P++ +G F L+ ++ A Sbjct: 304 VDFFVNEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354 >gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309] Length = 342 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 160/312 (51%), Gaps = 17/312 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ + + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + +++ + ++ +G +L++EQ + Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAM--VDAFAYGQRLMVEQRI 184 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG ++ V+ Y Y+ +Y++ + + +PA++ ++ ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVSTDRGRYDYDARYTTDETEYFVPARLSDELLADLQA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF +L Sbjct: 245 AAVEAHTTLGLRDLSRMDFVVDDE-GTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQL 303 Query: 289 LLWMVEDASCLR 300 +V+ + R Sbjct: 304 CADIVDFVAGGR 315 >gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 384 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 137/355 (38%), Gaps = 64/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 +AV GG S E E+S+ S + +A+ + +++ + + + Sbjct: 5 IAVAFGGRSVEHEISVLSAQQVMAAMNEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64 Query: 44 --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 L + DL F VLHG GEDG Q L+ L + Sbjct: 65 EFIADHDSVSLIRRDAHTYLIPSRRRLFAKEREVDLVFPVLHGTNGEDGTFQGYLKTLGV 124 Query: 78 PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131 PY +LA A+ DK+ KQV+ + + + P +IK Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLD 188 P GSS+GI V D + ++++ ++H ++ + E+ V Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH-KVVIEKVIEPLREINASVLGDEDGCRCS 243 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCR 241 E + + + SY+ KY + + PA++ + +EVQR+A +++ Sbjct: 244 TLEEVIKQDEILSYQDKYHGQGKSKGMVSTSRKLPAELTEEQTEEVQRMAMDTFRSLNAA 303 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ R DFL S +++ EIN PG S+ + G SF +L ++ A Sbjct: 304 GVVRIDFLMQQDSGELYVNEINTIPG----SLSFYLWEQEGLSFSAMLDELIALA 354 >gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702] Length = 397 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + V GG S E EVS+ S +++ ++V + + ++ + Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 44 LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 +L + D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P ++KP+ GSS+GI++ D+ + L + ++ L+ + E+ C V GD + Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233 + + +PA I + ++++ LA Sbjct: 244 TAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAVK 303 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M+ Sbjct: 304 AFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359 Query: 294 EDA 296 A Sbjct: 360 SLA 362 >gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 394 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 22 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 81 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 82 PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 141 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ + Sbjct: 142 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 201 Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + L + +H ++LIEQ +D E Sbjct: 202 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 261 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + P +PA +P + Sbjct: 262 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 321 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 322 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 380 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 381 YTELITKLID 390 >gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17] Length = 381 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ + Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + L + +H ++LIEQ +D E Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + P +PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171] Length = 381 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ + Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + L + +H ++LIEQ +D E Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + P +PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 160/312 (51%), Gaps = 17/312 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L G+ V DVD S+ ++ PD+ + ++HG+ Sbjct: 7 IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q+ LE L IP+ S + + L+ +K +K ++ S G+ + + + Sbjct: 67 GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +S P VIKP GGS+LGI + +++ + ++ +G +L++EQ + Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAM--VDAFAYGQRLMVEQRI 184 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG ++ V+ Y Y+ +Y++ + + +PA++ ++ ++Q Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVSTDRGRYDYDARYTTDETEYFVPARLSDELLADLQA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288 A AH +G R +SR DF+ D ++++ NV PGMT S+ P+ A SF +L Sbjct: 245 AAVEAHTTLGLRDLSRMDFVVDDE-GTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQL 303 Query: 289 LLWMVEDASCLR 300 +V+ + R Sbjct: 304 CADIVDFVAGGR 315 >gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010] gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010] Length = 381 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + + ++ P Sbjct: 9 VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q +LE Sbjct: 69 PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125 ++++PY G+LASA MDK +K ++++ G+PV P I V+ D+ + Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188 Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GSS G V + L + +H ++LIEQ +D E Sbjct: 189 QVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + + + P +PA +P + Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGGDQFYDFDSKYMDSSASHVEVPANLPQETL 308 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 ++V+ A A +A+ G+SR D P +V EIN PG TP+S++P+ G Sbjct: 309 QQVRETAIKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367 Query: 285 FRELLLWMVE 294 + EL+ +++ Sbjct: 368 YTELITKLID 377 >gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis CRIS 5C-B1] Length = 333 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 +A++ GG SSE +VSL S + S + + V + + D Sbjct: 8 IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S + D A+ +HG GE+G++Q EL++IPY+ SG+L AL+ +K + + Sbjct: 68 SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127 Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 +S + + + + + P +KP+ GSS G+ +K + L Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212 + + +IE Y+ G+EL+ G + V A + + Sbjct: 188 RVAFMQ--NEAAMIESYMKGVELSIGCYKTSEKAVVFPATEVVTSNEFFDYDAKYNGQVQ 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269 + PA+I D K+V + + C GI R D++ D V LE+N PGMT Sbjct: 246 EITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTPGMT 305 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S P+ AG E+L +VE+ Sbjct: 306 ATSFIPQQVRAAGLDITEVLTEIVEN 331 >gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 99/346 (28%), Positives = 154/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + +L GG S ER+VSL+SG + A AL + G +V +D ++ L+P Sbjct: 3 IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEV 62 Query: 52 ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 D+ F LHG +GEDG VQ LE + Sbjct: 63 GKEPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-----PPYVIKPL 133 +T + A A + K R++ V+++ GVPV L T + P V KP+ Sbjct: 123 FTGADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPV 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+ + + + + G +LL+E ++ G E T GV+G L V EI Sbjct: 183 ADGSSVSVHRADSLAELERLAPEMRAD--GAELLVEPFLPGREFTVGVIGGQVLPVIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFD 251 + + Y KY + V PA IP + +Q+LA AH+A+G SR+DF D Sbjct: 241 LSTP-LFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCD 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + + LE+N PG+T S+ P A+ AG+++ +L +V A+ Sbjct: 300 A-TGEPMCLEVNALPGLTATSLLPLAASGAGWTYADLAERIVSLAT 344 >gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Thermoanaerobacter tengcongensis MB4] gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Thermoanaerobacter tengcongensis MB4] Length = 389 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 133/362 (36%), Gaps = 71/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GG S E EVS+ +G + ++ + V R Sbjct: 4 VAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDIP 63 Query: 49 ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72 + D+ F HG GEDG +Q + Sbjct: 64 SLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLF 123 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHL 123 +L IPY SG++ SA MDK+ K + + +P+ + R + + Sbjct: 124 QLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESK 183 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +KP GSS+GI K + + + ++ ++ E D +E+ C VMG Sbjct: 184 LKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR-KIIVEEAVKDPMEVNCSVMG 242 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLA 234 + + + +PA IP + KE+Q LA Sbjct: 243 IDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKV 302 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 Q + C G++R DFL + + KV+ EIN PG S + G SF +L+ ++E Sbjct: 303 FQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIE 358 Query: 295 DA 296 A Sbjct: 359 YA 360 >gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 331 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 145/318 (45%), Gaps = 31/318 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAH---- 48 +A++MGG + E +SL SG+ L F+V +I + D++ + Sbjct: 4 IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63 Query: 49 ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 LK D FN +HG GEDG++QA LL+IPYT ++++ +K Sbjct: 64 TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+ PS +N+ + I P +KP + GSSLGI + +++ + + Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVYQERELAKAIE 183 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTH 213 + ++++E ++ G E++ GV+ + S S Sbjct: 184 HAF--RKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEIISRNDFFDFESKYSGKSQE 241 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA++ + K++++LA ++ + GISRS+++ ++ F+LEIN PG++ SI Sbjct: 242 ITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL--VNGDPFFLEINTIPGLSEESI 299 Query: 274 FPEMAAYAGYSFRELLLW 291 P+ AG S EL Sbjct: 300 LPKQLKIAGISLSELFKK 317 >gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC 27678] gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1] Length = 378 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 77/370 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + V+ GG + E +S S AL+ F+ + + ++ ++ P Sbjct: 6 IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D VLHG +GEDG +Q + E Sbjct: 66 PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----------------VNRFT 117 ++ +PY G+ ASA MDK +K ++++ G+PV P I Sbjct: 126 MMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAPGITLDARDCDAACAFAANGETMLA 185 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIE 176 + P +KP + GSS G+ ++++ + +H ++L+EQ +D E Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ + D + P +PA +P + Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + V+ A A +A+ G+SR D KV EIN PG TP+S++P+ G S Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364 Query: 285 FRELLLWMVE 294 + +L+ ++E Sbjct: 365 YTDLISTLIE 374 >gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 348 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40 +L GG SSE E++L S + L+ + + + +D+ Sbjct: 6 LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65 Query: 41 -------SVGLVLAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 S+ L LK + +HG +GEDG +Q L+ ++ Y +G+L+S+ Sbjct: 66 CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142 + MDK+ + + + + N + D + I P ++KP GSS+G+ Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVGVN 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200 + + S + +++L+E+ + G E+ ++GD L ++ V F Sbjct: 186 KAENIDELLK--FGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHIFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY ++ +LP + + K++ A ++A C+G +R D + + Sbjct: 244 DYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIFL--KDNEFYIN 301 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + + F ++L ++E+ Sbjct: 302 EINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEE 337 >gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259] Length = 337 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 134/326 (41%), Gaps = 35/326 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +A++ GG SSE +VSL S S ++ + V +++ D + Sbjct: 10 IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV-- 99 D A+ +HG GE+G++Q +L+ IPY+ S +L AL+ +K Sbjct: 70 FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129 Query: 100 ------VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 ++ + + P +KP GGSS G+ +K ++ Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + D+++IE+ + G E+TCG + V + +F+ Y+ K + Sbjct: 190 I--EKALLESDEVMIEKMIVGTEITCGAYKKGNEIITFPITEVVTEEEFFDYDAK-YNGK 246 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGM 268 + PA++ + V + + + C GI R D++ ++ LEIN PGM Sbjct: 247 VDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEINTTPGM 306 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 T S P+ AG E+L ++E Sbjct: 307 TTTSFIPQQVRAAGLEIAEVLSDIIE 332 >gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3] Length = 331 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 133/326 (40%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVSL S L+ F V ++++ +S G L Sbjct: 8 LLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEI-KSEGWCLDSGELVYLDINNQTL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 67 RGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126 Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + +K + GSS+G + + + + + Sbjct: 127 LGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAINK 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210 + + DQ+L+E+ V EL P FYSYE KY S + Sbjct: 187 AF--TYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V + + + + + A + R +SR DF +++ E+N PGMTP Sbjct: 245 ITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F + L V + Sbjct: 304 ISMFPKMVEHDGHKFAQFLENCVRTS 329 >gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1] Length = 316 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 149/307 (48%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GGIS ER+VSL SG+ A L G V D D ++ L KPD+ + LHG Sbjct: 10 VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +L+L+ IPY S A+ L+ DK +K +VS GV SI ++R + Sbjct: 70 GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +S V+KP +GGS+ G+ ++ +P + +++N+ D LIEQ + Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAM--VNAYNYCDVALIEQRI 187 Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ A P Y++E +Y++ + PA+I Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEIDPVGGAYTFEARYNAGQTRFYTPARISGADADRAAE 247 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH A+G R +SR D + D ++LE NV PG+T SIFP+ AG+ + Sbjct: 248 AALAAHSALGLRHLSRVDMIVDGA-GTPWFLEANVLPGLTETSIFPQALVAAGHDLGRVY 306 Query: 290 LWMVEDA 296 + + A Sbjct: 307 AALADAA 313 >gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1] Length = 360 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 159/341 (46%), Gaps = 49/341 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------V 42 A++ GG SSE +VS+ S +A++ + F+ + V R + Sbjct: 7 ALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAPL 66 Query: 43 GLVLAHLKP--DL---------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 VL +P DL F +LHG +GEDG +Q + E+ ++PY SG+LAS+L M Sbjct: 67 RAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLCM 126 Query: 92 DKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 DK+ K+ V++ + + V + P +KP GSS+ Sbjct: 127 DKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSSV 186 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----- 194 G+ S+ L + + Q++IE+ +D E+ V GD D Sbjct: 187 GVSRADDLASLDAALDLAL--RYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEIIL 244 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 PK ++Y+YE KY +++ +P ++P +Q LA A +A C G++R DFL + S Sbjct: 245 PKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERDS 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + + E+N PG T +S++P++ AG S+ EL+ +V+ Sbjct: 305 LEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDL 345 >gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f] Length = 369 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 138/313 (44%), Gaps = 22/313 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + V+ GG S E EVSL+S A AL AG V+ + +DR + Sbjct: 23 VVVIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEV 82 Query: 51 ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 A +LHG GEDG + A+ EL +PY S + A AL+MDK +K V + GV Sbjct: 83 LRSCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRT 142 Query: 108 CPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 P ILVNR + + P V+KP+ GSS G+ ++ + + + + D++ Sbjct: 143 APGILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAVEAALTL--DDRV 200 Query: 167 LIEQYVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 L+E+ V G E+ G ++ V + ++ ++PA + Sbjct: 201 LVEEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYDGSARFLVPAPLSDA 260 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 ++ A + A+GC G++R DF E+N PG T S P M A AG Sbjct: 261 QLGVLREAAVTVYDALGCAGVARVDFFLTDAG--PVLNEVNTMPGFTSHSQVPRMFAAAG 318 Query: 283 YSFRELLLWMVED 295 + ELL ++ D Sbjct: 319 VPYPELLELLIAD 331 >gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3] Length = 397 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43 + V GG S E EVS+ S +++ ++V+ + + ++ + Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVTPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 44 LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 +L + D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESRRVILVNDGGKVQLVLYPGKKFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P ++KP+ GSS+GI++ D+ + L + ++ L+ + E+ C V GD + Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233 + + +PA I ++++ LA Sbjct: 244 TAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGMATLKRKIPADISDKTREQIRTLAVK 303 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M+ Sbjct: 304 AFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359 Query: 294 EDA 296 A Sbjct: 360 SLA 362 >gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221] Length = 305 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 13/304 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+ +EREVSL+SG A A+AL +A F V ++ +D + + F LHG Sbjct: 6 VIVMYGGVGTEREVSLNSGDAIAAAL-EANFPVERLRLDSAELPGTIDAATSIVFPALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +FGEDG +QA+++ I Y SG AS L MDK R+K++ + V ++ + + Sbjct: 65 SFGEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPL 124 Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + VIKP GSS+G+ + + + L Q L EQ + G E Sbjct: 125 ADALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQIHQ----GNWLAEQRIRGRE 180 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 LT GV+ ++ + S Y Y KY+ ++ + PA++ + ++Q+ A + Sbjct: 181 LTVGVLHGKAM-GVVEIISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYA 239 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 A CR +R DFL D ++LE+N PG+T S+ P+ AA GY F L +V A Sbjct: 240 ACDCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLV-SA 296 Query: 297 SCLR 300 + R Sbjct: 297 AIER 300 >gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum JIP02/86] gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 328 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 29/325 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41 +AV+MGG S E +SL SG+ + L+ + + + ++ + D S Sbjct: 3 VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62 Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D+A N +HG GEDG +Q+ EL++IPYT SAL+ +K + V++ Sbjct: 63 FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122 Query: 102 SCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P SI + + + P+ +KP + GSSLG+ + + L Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLGVSKVDALDQLEKAL--E 180 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVL 215 ++ +++LIE Y++G E++ GV+ + + S + Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEILSQNDFFDYEAKYLGKSEEIT 240 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+I + V A + ++G G SR+DF+ ++ ++EIN PG++P SIFP Sbjct: 241 PARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSIFP 298 Query: 276 EMAAYAGYSFRELLLWMVEDASCLR 300 + A +A ++L + A + Sbjct: 299 QQAMFAKMDMPQMLDNEITLALSRK 323 >gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7] Length = 326 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 30/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VLMGG SSE ++SL SG A L+ F V I + D Sbjct: 4 IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S+ + H+ D +N +HG GEDG +QA LELL IP T SA++ +K V+ Sbjct: 64 SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+ I +N+ + IS PY +K + GSS G+ + K + + L Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKALEL 183 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214 + S D++++E ++DG E++ G+ + + S + Sbjct: 184 AFSV--DDEVILESFLDGTEVSVGIYQLGEEIIALPPTEIVSDNDFFDYEAKYQGKSQEI 241 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I +++ VQ + + + C+GI+R+DF+F ++EIN PGM+ SI Sbjct: 242 TPARISVELTLAVQEQSKRIYSVLKCKGIARADFIF--HDGTPHFIEINTNPGMSTESII 299 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ + +++ ++E+ Sbjct: 300 PQQIRATDKTLQQVFTEVIEN 320 >gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a] Length = 397 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 139/363 (38%), Gaps = 72/363 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 + V GG S E EVS+ S +++ ++V + + ++ + + Sbjct: 5 VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64 Query: 50 ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75 D+AF ++HG EDG+ Q L+ + Sbjct: 65 SLLKESHRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126 +PY +++SA+ MDK K V G+PV +++ D + I+ Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P ++KP+ GSS+GI++ D+ + L + ++ L+ + E+ C V GD + Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233 + + +PA I + ++++ LA Sbjct: 244 TAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAVK 303 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +++G G SR DF+ D + V+ EIN PG S+ + G + ELL M+ Sbjct: 304 AFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359 Query: 294 EDA 296 A Sbjct: 360 SLA 362 >gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 329 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 136/324 (41%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E EVSL S S LE F+V ++++ L Sbjct: 8 LLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTLNS 67 Query: 50 -----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 EVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDALS 127 Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P I + +K + GSS+G + + + + + Sbjct: 128 IPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQLQKAINDAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKY--SSLNST 212 + DQ+L+E+ V EL P+ FYSYE KY S ++T Sbjct: 188 --GYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHSTT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V + + D +Q+ + + + R +SR DF P V+ E+N PGMTP+S Sbjct: 246 DVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTPEGN-VYLNEVNTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 +FP+M ++G F E L V+ + Sbjct: 305 MFPKMVEHSGLKFSEFLADCVKSS 328 >gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis Sweden2] gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/150] gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis E/11023] Length = 803 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ ++ Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLI 777 >gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella vaginalis AMD] Length = 380 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 142/372 (38%), Gaps = 79/372 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + L GG + E +S S SA+++ F + +I + + ++ P Sbjct: 6 VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFRMEEGE 65 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG GEDG +Q +L Sbjct: 66 LPVITKTAGTRDVVLDPAKGADGFLVRKADDTLESLGHIDAVFPVLHGPNGEDGTLQGLL 125 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------------------ILVN 114 E++++PY G+LASA MDK +KQ+ + G+ V P Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDSTNRFAAYANE 185 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP + GSS G+ ++ + L + H ++L+EQ ++ Sbjct: 186 MLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESHDAKALAQAVFEASKHDWRVLVEQGINA 245 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222 E+ C V+ + ++++P +PA +P + Sbjct: 246 REIECAVLAARDGEEPKVSLPGEIVLDKRQAGEDQFYDFDSKYMDSAASHVEVPADLPAE 305 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V++ A A +A RG+SR D P V EIN PG TP+S++P+ G Sbjct: 306 TLELVRKTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTPISMYPKAWEATG 364 Query: 283 YSFRELLLWMVE 294 S+ +L+ ++E Sbjct: 365 ISYGDLITKLIE 376 >gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83] gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83] Length = 330 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASAL------------EDAGFKV-------SQID-VDR 40 +AV+ GG S E VSL S S L E + V +D D Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 S L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S G+ + S+ D + P +KP GGSS+ + + + + Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIE 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTH 213 Q+ + G++++IE+ + G E+TCG V + + Sbjct: 186 QAF--SEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKYNGAVEE 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + + +Q + ++ + RGI R D++ LE+N PGMTP S Sbjct: 244 ITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPTSF 302 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG +E+L ++ D Sbjct: 303 IPQQVRAAGMDMKEVLCTIIRD 324 >gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 345 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 137/336 (40%), Gaps = 46/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLA-- 54 +L GG SSE +++L S ++ L + + + + +D+ + + + DL Sbjct: 6 ILCGGPSSEHDIALRSALNISNNLNENKYNIKLVYIDKKGAFSEPFEKIETNDEFDLVRD 65 Query: 55 --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 V+HG +GEDG +QA L++ I Y +G+L+SA Sbjct: 66 IKESKTKSISNFLDIISKEDLTNTIILPVVHGTYGEDGTIQAFLDVAGISYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ S + + + N F I P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKNKLRQAKYLYTNKEGLDDNFLDKCIEEIGLPLIVKPSANGSSVGVN 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200 + + + + + ++L+E+ ++G E + + + F Sbjct: 186 KVTTRKELLD--SGLEALKYDKKVLVEELIEGQEIEFAVVGDMNPDVSKPAAYISDHTFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY S ++ LP K+ D KE Q + A GC G +R D + + Sbjct: 244 DYDAKYFSKSTKESLPYKLDEDKLKEAQEFVKKCYVACGCEGFARVDIFY-ANDGNFYVN 302 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + SF ELL ++ED Sbjct: 303 EINTFPGFTPSSFFARLCELMYDKSFSELLDILIED 338 >gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758] Length = 320 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 43/317 (13%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------------------DLAFNV 57 L+ ++++ + + + + + D+AF V Sbjct: 1 MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVFNLLRSQDVAFPV 60 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG +GEDG +Q + EL ++PY + AS+ MDK+ +K+V S G+P S+ V + Sbjct: 61 LHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVKKRN 120 Query: 118 M------------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P IK + GSS+G K++ + L +++ Sbjct: 121 DGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEEAAK 180 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++ + +E D + +P +FY++E KY S +PAK+ Sbjct: 181 YDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIPAKV 240 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +I +++++ A A +AI G+SR DF D + V+ EIN PG T +S++P++ Sbjct: 241 DEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQLME 300 Query: 280 YAGYSFRELLLWMVEDA 296 GYS+ ELL ++E A Sbjct: 301 DYGYSYSELLDKLIEIA 317 >gi|283768801|ref|ZP_06341712.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa W1219] gi|283104587|gb|EFC05960.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa W1219] Length = 394 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 71/362 (19%), Positives = 133/362 (36%), Gaps = 70/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42 + V GG S E EVS+ S + AL+ ++V + V + + Sbjct: 5 VGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVENFTNL 64 Query: 43 GLVLAH--------------LKP--------------DLAFNVLHGNFGEDGLVQAILEL 74 +L ++P DLA V+HG GEDG +Q + E+ Sbjct: 65 PALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQGLFEM 124 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126 L+IP+ I + + DK+ K ++ +P+ P V +++ + Sbjct: 125 LKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQTQILEKVNSLGY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW------------NHGDQLLIEQYVDG 174 P ++KP + GSS+GI + ++ + + + G Sbjct: 185 PVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVIGDHTG 244 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + K + K ++ +PA + + K +Q+LA Sbjct: 245 SRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQLAKDT 304 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +G G+ R DF+ D ++K++ EIN PG S+ + G F +L+ ++ Sbjct: 305 FRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLMNQLIT 360 Query: 295 DA 296 A Sbjct: 361 LA 362 >gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 05ZYH33] Length = 424 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 41/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 86 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + ++ + + ++ P +KP GSS+GI + Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G D + V FY Y Sbjct: 206 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEVVKNVAFYDYHA 263 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY +PAKI I ++ A A +AIG G+S DF + ++F E+N Sbjct: 264 KYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNELNT 322 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T ++P + G + EL+ +V A Sbjct: 323 MPGFTQWFMYPLLWDNMGLGYPELIEKLVCLA 354 >gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 351 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 147/344 (42%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV GG S+E +S+ +G L G V I + + G V Sbjct: 4 IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +++L D+ F LHG GEDG +Q L +L +PYT SG+ Sbjct: 64 SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123 Query: 86 ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 ASAL+MDK R+ Q+ V T+ + P +KP++GGS Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190 S+ I + + L +++ + ++ G E++CGV+ Sbjct: 184 SVSTYKITNQEQLSRQLALIF--ESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 VP +F+ +E KY S + PA+I VQ LA AH ++GCRG SRSDF+ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFII 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + LE N PGMT S+ P+ A AG + E+ ++E Sbjct: 302 --VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343 >gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270] Length = 357 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 152/343 (44%), Gaps = 47/343 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP--- 51 +L GG S+E E+S+ + K+ + L+ +K+ I VD+ + + K Sbjct: 6 LLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKELVV 65 Query: 52 ----------------DLA------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D F +HG F EDG +Q +++++ Y + +L+SA+ Sbjct: 66 EGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSSAV 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140 MDK + V + G+ LV ++ + I IKP GSS+G Sbjct: 126 CMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSSVG 185 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198 + + K + I L+++ + +++L+E+ V G EL VMG+ L + + Sbjct: 186 VTKVTKKEEIEPALIEAF--KYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVTRE 243 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ YE KY + H++P + + KE+Q +A A+ C+G +R D RK+ Sbjct: 244 FFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRKML 303 Query: 259 WLEINVQPGMTPVSIFPEM-AAYAGYSFRELLLWMVEDASCLR 300 EIN PGMT VS+ P M ++ + L ++E A + Sbjct: 304 VNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELAVENK 346 >gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222] gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222] Length = 331 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVS+ S L A F V ++++ ++ G L Sbjct: 8 LLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINDQTL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 67 RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126 Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + +K + GSS+G + + + + + + Sbjct: 127 LGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQAEELSEAINK 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210 + DQ+LIE+ V EL P FYSYE KY S + Sbjct: 187 AF--TFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V + + + + A + R +SR DF +++ E+N PGMTP Sbjct: 245 ITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F + L V + Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec] Length = 321 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 140/311 (45%), Gaps = 17/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S EREVSL SG AL G + DVD + LA PD+ F VLHG Sbjct: 9 ILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +L+L +PY + A ++ DK +K V + GV ++ + R Sbjct: 69 GEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGS+ G+ + + L+ + D LIEQ V Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVTHVDDAGGLAEALMSCF--GYHDSALIEQAV 186 Query: 173 DGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ P++ Y Y +Y++ ++ PA++ D+ Sbjct: 187 AGVEIAIGVVDSGDGPVALPAVEIEPRAGVYDYAARYTAGATSFFTPARLHKDVLWAAAE 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+ +G R +SR+D + D +LE+NV PGMT S +P AG F + Sbjct: 247 TALTAHRVLGLRDLSRTDMIVD-RDGVAQFLEVNVAPGMTDTSTWPMGLHAAGLDFAVVC 305 Query: 290 LWMVEDASCLR 300 + A C R Sbjct: 306 RDLAAHA-CDR 315 >gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70] gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s] Length = 803 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ ++ Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLI 777 >gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] Length = 286 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 9/287 (3%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 +G+ + L+ +++ I + LV D+A LHG +GEDG +Q LE L Sbjct: 1 MTGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLG 60 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPL 133 +PYT SG+L+S + MDK SK+++ G+ I +D + P V+KP Sbjct: 61 VPYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPN 120 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G+ ++ +++ L W +++IE+Y+ G E+TC ++ L Sbjct: 121 SGGSSVGVKIVYDKETLLASLEDVFKW--DAEIVIEKYIKGEEITCSILDGKLL-PIISI 177 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 ++F+ Y KY + + + ++PL Y+ V A ++ + C +R D + Sbjct: 178 QHTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMI--K 234 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + +E+N PGMT S+ P+ A AG S+ +LL ++E + +R Sbjct: 235 DGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281 >gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ] Length = 329 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 131/327 (40%), Gaps = 35/327 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48 +L GG SE EVSL S LE + V ++++ + V H Sbjct: 6 LLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGELY 65 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D A +HG GE+G++Q+I EL+ +PY S +K+ +K + Sbjct: 66 YPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLWLD 125 Query: 102 SCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + VP P I ++ + +S + IK GSS+G + + + +L Sbjct: 126 ALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLESTIL 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + + +LIE+ + EL + V + ++ Sbjct: 186 SAF--KFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPDGFYDYDQKYSNDSAT 243 Query: 216 PAKIPL-----DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 ++ + +++ + A + + R +SR DF KV+ EIN PGMT Sbjct: 244 KTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTEE-GKVYLNEINTFPGMTS 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDAS 297 +S+FP+M G F E L ++E+++ Sbjct: 303 ISMFPKMMENHGVKFSEYLRKIIEEST 329 >gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 323 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 87/306 (28%), Positives = 160/306 (52%), Gaps = 17/306 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 ++ GG++ ER+VS+ SG+ A+ L AGF V DV+ ++ +A +P++ + ++HG+ Sbjct: 9 IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG +Q +LE L IP+ S + S L+ +K +K +++S G+P + + Sbjct: 69 GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +H +S P VIKP GGS+LG+ + + + ++ +G +L++EQ + Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAM--VDAFAYGQKLMVEQRI 186 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 DG ++ V+ Y Y+ +Y++ + + +PA++ + +++ Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEISTDGGRYDYDARYTTDETEYFVPARLESNALADLRA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288 A AH A+G R +SR DF+ D ++++ NV PGMT S+ P+ A A YSF Sbjct: 247 AAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSFAAF 305 Query: 289 LLWMVE 294 +V+ Sbjct: 306 CKEVVD 311 >gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084] Length = 359 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 87/352 (24%), Positives = 149/352 (42%), Gaps = 59/352 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG SSE +VSL S L ++ + + R +L Sbjct: 7 VALLFGGTSSEHDVSLRSAANVID-LLSERVDLTLVGITRGGSWLLYGGDATAIADDSWQ 65 Query: 47 -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L D+ F VLHG GEDG+ Q +LE +PY Sbjct: 66 GHDTTPVCAVPGDGGGLFAVEGGSPVRLPIDVVFPVLHGQGGEDGVTQGLLESCRLPYVG 125 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLKGG 136 G+L+SAL DK + ++V++ G+ +V+ + P +KP +GG Sbjct: 126 CGVLSSALCTDKDAAHRIVAAAGIRSPRCEVVHPGDGATRIAEVAAACGYPLFVKPARGG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---- 192 SS G+ ++ + + L + + +++ +E+ + G E+ C +MG A+ ++ Sbjct: 186 SSYGVSKVEGPEQLDEALGLAF--GYDEKVAVEEAIVGTEVGCAIMGGAAGELAMGLVDE 243 Query: 193 -------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +S S+ NS+ PA +P ++ + V+ +A+GC G++R Sbjct: 244 TVVSDGGFFHIHQDHSEGADASTRNSSTRCPALLPPEVMERVRETGTAVWRALGCSGLAR 303 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 D +V + E+N PG+T S FP M A AG E+L +V A+ Sbjct: 304 VDLFVTER-GEVVFNEVNTMPGLTSYSRFPAMMAAAGADMGEVLERLVRSAA 354 >gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276] gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase [Chlamydia trachomatis 6276s] gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11222] Length = 803 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ +V Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia trachomatis D/UW-3/CX] Length = 803 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ +V Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01] Length = 331 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVSL S L A F V ++++ ++ G L Sbjct: 8 LLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINNQTL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 67 RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126 Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + +K + GSS+G + + + + + + Sbjct: 127 LGIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAINK 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210 + DQ+L+E+ V EL P FYSYE KY S + Sbjct: 187 AF--TFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSSDSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T + + + + + A + R +SR DF +++ E+N PGMTP Sbjct: 245 ITEIEANNLTDEQLELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F + L V + Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401] gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401] Length = 346 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 55/334 (16%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--------------- 51 SL S K A++ + F V + +D+ +L P Sbjct: 2 SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV 61 Query: 52 --------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D+ F ++HG GEDG +Q +L + +P+ S +LASA M Sbjct: 62 PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 121 Query: 92 DKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK +K+++ G+ + P I N + + + P +KP GSS+G V K Sbjct: 122 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVG--VSK 179 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + ++ ++++EQ + G E+ C V+G+ + + Y Sbjct: 180 VTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 239 Query: 206 YSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 ++ V+PA I +I +++ +A A+Q +GC G++R D P +V EI Sbjct: 240 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEI 298 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T +S++P++ +G + +L+ ++E A Sbjct: 299 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 332 >gi|268609111|ref|ZP_06142838.1| D-alanine--D-alanine ligase [Ruminococcus flavefaciens FD-1] Length = 357 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 141/346 (40%), Gaps = 54/346 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 AV+ GG S E ++SL+S + + ++V I + R Sbjct: 7 AVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIPTGEWEQ 66 Query: 45 ------------------VLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80 +L K D+ F V+ G G DG +Q +L+L IPY Sbjct: 67 DPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDLSGIPYV 126 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132 G+LA+A MDK V+ + ++ + + + P ++KP Sbjct: 127 GCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCHEIAGELGFPLIVKP 186 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 K G+S G + + + ++ +++++E+YV G ++ V G + T I Sbjct: 187 AKSGTSAGTGKADDLAQLIAAVKVAF--SNDNKVVVEKYVSGRKMEAAVFGYDTPFSTYI 244 Query: 193 AVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 Y+ + ++ +PA I ++ ++ A A++A+GC+G++R DF Sbjct: 245 GEILDPDRVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGLARLDFFL 304 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ +I PG+ S+FP++ + G S + + ++E A Sbjct: 305 T-DDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349 >gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 389 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 136/367 (37%), Gaps = 74/367 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHL------- 49 +AV+ GG S E EVS+ +G ++ + + + + + + L + Sbjct: 4 IAVVFGGRSVEHEVSIITGMQIMENMDKSKYNPIPLYITKEGKFLTGDCLKNFSTFKKND 63 Query: 50 ----------------------------------------KPDLAFNVLHGNFGEDGLVQ 69 K D F LHG +GEDG Q Sbjct: 64 FSEAIEVFFKGYTGDSNMYTIKIQKSGLFSKENFGIEVYAKIDAVFPALHGTYGEDGCFQ 123 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QH 122 +LEL+++PY G++++A+ MDK+ K+V S +P+ R + Sbjct: 124 GLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPMTEYFYFYRDEWKNRDEIIEKAE 183 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + +KP GSS+GI + + + ++ + + Sbjct: 184 KLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAVHYDRKIIVERAVENPREINAAVMG 243 Query: 183 GDASLDVTEIAVPKSD------FYSYELKYS----SLNSTHVLPAKIPLDIYKEVQRLAF 232 + + V+ P Y N LPA IP D+ E+++ A Sbjct: 244 YEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGMKNKKKNLPADIPEDVRAEIEKYAH 303 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 LA +AI G +R DFL D KV+ EIN PG SI + +G SF+EL+ + Sbjct: 304 LAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPG----SIAFYLWEESGISFKELITRL 357 Query: 293 VEDASCL 299 +E + Sbjct: 358 IELSKIR 364 >gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis A/HAR-13] gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis B/Jali20/OT] gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9768] gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/11074] gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis G/9301] Length = 803 Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ +V Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406] Length = 330 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 31/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S EREVSL S ++ F + + R + V Sbjct: 8 IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67 Query: 46 ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D AF +HG GE+GL+Q ++LEIPY G+L +L+ DK +S Sbjct: 68 FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127 Query: 102 SCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+ + S + I P +KP GGSS+ + + + + ++ Sbjct: 128 AFGIRIAASERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQLAVAIQKA 187 Query: 158 SSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++L+E+ ++G E L +TE+ + K +F+ ++ K NS Sbjct: 188 FEEAP--EVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAK-YHGNSDE 244 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + +E+Q L + +GI R D++ K LE+N PGMT S Sbjct: 245 ITPARISEKLTQELQELTSRIALLLHAQGIIRVDYII-EADGKPTLLEVNTTPGMTEASF 303 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG + ++ D Sbjct: 304 IPQEIRAAGLELSHIFTAIIND 325 >gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 803 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEKYGL 690 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ +V Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777 >gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3] Length = 329 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 126/322 (39%), Gaps = 28/322 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS S + ++ + F + + V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + +A+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S ++ + + P +KP GGSS+ I++ + Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ + + + + C ++ D + + V D + S Sbjct: 186 VVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKYYGKSDE 245 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ + + C G R DF+ LE+N PGMT S Sbjct: 246 ITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFII-EADGIPTLLEVNTTPGMTEASF 304 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG +L+ +++ Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326 >gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC] gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC] Length = 833 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44 ++ GG S E E+S+ S K A L + + VS + R Sbjct: 481 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 540 Query: 45 --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +A K D+ +LHG +GEDG +Q LE + PYT I SA++M+K+ +K+ + Sbjct: 541 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 600 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 601 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 660 Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206 + ++ ++ ++ + + + G + F Y+ KY Sbjct: 661 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 720 Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ V + +I +++ A ++ + +G R DF D + E+N Sbjct: 721 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 779 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G+S+ +++ +V Sbjct: 780 PGMTETSPFLTSFIRKGWSYEQIVHQLV 807 >gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32] gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32] Length = 331 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 131/326 (40%), Gaps = 36/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVS+ S L F V ++++ ++ G L Sbjct: 8 LLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEI-KNEGWCLDSGELVYLDINDQTL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 K D +HG GE G +Q++ E+ +IPY G AS S +K+ SK + Sbjct: 67 RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126 Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + +K + GSS+G + + + + + + Sbjct: 127 LGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAINK 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210 + DQ+LIE+ V EL P FYSYE KY S + Sbjct: 187 AF--TFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V + + + + A + R +SR DF +++ E+N PGMTP Sbjct: 245 ITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F + L V + Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329 >gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333] Length = 313 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S ER+VSL SG+ A AL DAG + DVD + L +PD+ + +LHG+ Sbjct: 7 VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +LEL+ + +G S ++ K +K V++ GV S + + Sbjct: 67 GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGS+LG+ ++ +++P + S +++GD LIEQ V Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAM--VSCFSYGDVALIEQAV 184 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G E+ V+ V Y ++ +Y++ + + PA++P D Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLAAACA 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A AH + R +SR+D + D ++LE+NV PGMT S+FP AA + EL Sbjct: 245 VAVRAHDVLRLRHLSRTDLVVDGY-GVAWFLEVNVAPGMTETSLFPLAAAASPTPLPELY 303 Query: 290 LWMVEDA 296 + + A Sbjct: 304 RGLADVA 310 >gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16] Length = 347 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 45/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 + GG S+E VSL S A + L+ + F+ + + +S G + Sbjct: 8 IFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQGT 67 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L D AF VLHG GEDG +Q +LEL IP G Sbjct: 68 ECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIGCG 127 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSS 138 L+SAL MDK R+ ++ + GV V S++ R + + P +KP++ GSS Sbjct: 128 ALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAGSS 187 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 GI + + +P + + + L + + ++ + Sbjct: 188 FGITRVTGPEGLPGAAAAAFANDRELLLEEAIPGFEVGCAVLGTDELTVGAVDEIELSQG 247 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F+ +E KY+ S PA+I E+Q +A ++A+ C+ +R D P ++ Sbjct: 248 FFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTPE-GEIV 306 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E+N PG T S +P M AG F L+ ++E Sbjct: 307 FNEVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342 >gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium] Length = 333 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 141/329 (42%), Gaps = 47/329 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V I + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++F E+N PG T S++P + G Sbjct: 302 NELFLNELNSMPGFTEFSMYPTLMGKYGL 330 >gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 393 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 151/374 (40%), Gaps = 80/374 (21%) Query: 1 MAVLMGGISSER-------------------EV------------------SLSSGKACA 23 + VL GG S E EV SL +GK Sbjct: 7 VGVLFGGRSGEHDVSLLSAASVINAVDKKKFEVVPIGITKEGKWLTASHAESLLNGKKAE 66 Query: 24 SALED------------AGFKVSQIDV-------------DRSVGLVLAHLKPDLAFNVL 58 L A + + + G + + D+ F VL Sbjct: 67 QQLRAGDPEATPGAAVLAKGEAVLVPPVPQSDRSAIVPFETDAAGHSASSIDVDVIFPVL 126 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGEDG +Q + EL IPY +G+L SA MDK K + + G+P+ + V R Sbjct: 127 HGTFGEDGTIQGLFELANIPYVGAGVLGSAAGMDKDIMKALFKNAGLPIVKHMTVLRSQW 186 Query: 119 DSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +KP GSS+GI + + L +++ +L+IE Sbjct: 187 QREPKKVKKLVESKLKYPVFVKPANLGSSVGISKAHDSKELGPALDEAA--KFDRKLVIE 244 Query: 170 QYVDGI-------ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 Q V G E + + V VP +FY Y KY S +PAK+P Sbjct: 245 QGVGGKKKKAREIECSVLGNDEPKASVPGEIVPIKEFYDYAAKYLDEGSALEIPAKLPKS 304 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 K+VQ LA A QA+ G+ R DFL DP S K++ EIN PG T +S++P++ +G Sbjct: 305 TQKQVQELAIRAFQAVDGSGLGRVDFLIDPKSNKLYVNEINTMPGFTSISMYPKLWEASG 364 Query: 283 YSFRELLLWMVEDA 296 + +L+ ++E A Sbjct: 365 LKYTDLITRLIELA 378 >gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus] gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus] Length = 354 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 142/343 (41%), Gaps = 50/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E EVSL S + F+V + + + + Sbjct: 7 VGLVCGGCSLEHEVSLKSAIYIMKYINKRFFEVVVLWISKQGDWYIVENDDMHIDFFVNK 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L D+ F ++HG GEDG +Q +L L+ +PY S Sbjct: 67 ENLHKCMPILMFSSGNRCFEYINNILSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSD 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137 +L SA+ MDK +K+++ G+ + P ++ P+ +KP+ GS Sbjct: 127 VLGSAICMDKDITKRLLRDSGLSITPFRTFLAHEKKKLKFLNFADMFGLPFFVKPVNQGS 186 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVMGDASLDVTEIA 193 S+G+ + D S L + ++H +++IE + G EL C + EI Sbjct: 187 SIGVAKVNDDYSFHSALDIAFFYSH--KIIIESCIAGRELECAVLGNNENPITSVCGEII 244 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 DFY+Y KY NS V+PA + + +++ +A Q + C G++R D Sbjct: 245 KKNDDFYTYCDKYVDHNSEIVIPAVLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFGK 304 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ E+N PG T S++ ++ G + LL ++ A Sbjct: 305 D-RIIINEVNTLPGFTSDSMYLKLWQATGINISTLLTRLIMLA 346 >gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A] Length = 328 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 30/318 (9%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 V+ GG +SE ++SL SGK L+ + ++V I ++ + + Sbjct: 8 GVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDFT 67 Query: 52 ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 D+ FN +HG GE+G + A+ ELL IP++ SAL+ +K V+ Sbjct: 68 LQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLSVLR 127 Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P ++R I P +K + GSS G+ +KK ++ L ++ Sbjct: 128 EINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQALQKA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVL 215 Q++IE ++G E++ GV + S + Sbjct: 188 F--QEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIITENEFFDYAAKYEGKSQEIT 245 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP++ +EV++ + + +G +G+ RS+F+F + LEIN PG T SI P Sbjct: 246 PAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF--VDGVPHLLEINTVPGFTQKSIIP 303 Query: 276 EMAAYAGYSFRELLLWMV 293 + A G E ++ Sbjct: 304 QQALAMGIELSEFFNLLL 321 >gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 56/337 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + ++ GG S+E EVSL S ++ F++ + + G + Sbjct: 10 VGLICGGCSTEHEVSLQSAAYIMQHIDKNLFEIVVFWISKHGGWYIIYNDVSRNIFSDSR 69 Query: 47 ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 A LK D+ F ++HG+FGEDG +Q ++ ++ +PY Sbjct: 70 EQKNKYIPVMIKQFSGRFVFFTDDITSALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPY 129 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPL 133 S IL S++ MDK +K+++ G+PV + + + +S P+ IKP+ Sbjct: 130 VGSSILGSSICMDKTITKRLLRDSGLPVASFKTFSHYERSNITFVSFYNMFGLPFFIKPV 189 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASL 187 GSS+G+ + L + +GD++++E + G EL C + Sbjct: 190 NQGSSIGVSKVTNQNVFNKALDVAF--AYGDKIMVEPCIVGRELECAVLGNDDPISSVCG 247 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 ++ + + FY+Y KY S + ++PA I I +V+ + A Q + C G++R D Sbjct: 248 EIVINSNNDNGFYTYYKKYISSTTEVIIPALITNIISDKVRHYSICAFQTLSCSGMARID 307 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 L+ ++ E+N PG T S++P++ G S Sbjct: 308 MFLT-LNNQIIINEVNTLPGFTSHSMYPKLWEATGIS 343 >gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine Ligase (Ddl) From Thermus Caldophilus: A Basis For The Substrate-Induced Conformational Changes Length = 322 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 35/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG+S E EVSL S + + F + + +L Sbjct: 8 LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 64 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+ Sbjct: 65 EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 124 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ GVPV P + V + P + +KP GSS+GI +++ Q + L + Sbjct: 125 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 183 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + ++ ++E+ + + E+ ++ FY YE KY+ + ++ Sbjct: 184 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 241 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ LA A++ +G RG++R DF +++ E+N PG TP S++P Sbjct: 242 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GELYLNELNTIPGFTPTSMYP 299 Query: 276 EMAAYAGYSFRELLLWMVEDASC 298 + G ++ ELL +VE A Sbjct: 300 RLFEAGGVAYPELLRRLVELALT 322 >gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8] gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate From Thermus Thermophilus Hb8 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Amppnp From Thermus Thermophilus Hb8. gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp From Thermus Thermophius Hb8 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp And D-Alanine From Thermus Thermophius Hb8 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp And D-Alanine:d-Alanine From Thermus Thermophius Hb8 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8] gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus] Length = 319 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 35/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG+S E EVSL S + + F + + +L Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 61 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL MDK SK+ Sbjct: 62 EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 121 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ GVPV P + V + P + +KP GSS+GI +++ Q + L + Sbjct: 122 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 180 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + ++ ++E+ + + E+ ++ FY YE KY+ + ++ Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ LA A++ +G RG++R DF +++ E+N PG TP S++P Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GELYLNELNTIPGFTPTSMYP 296 Query: 276 EMAAYAGYSFRELLLWMVEDASC 298 + G ++ ELL +VE A Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319 >gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD 2210633] gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 329 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L KV+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + +K + GSS+G + + Q+I + + Sbjct: 127 DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 + DQ+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + +++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601] Length = 371 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 57/350 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 VL GG S+E EVSL + + A++ F++ I + + Sbjct: 7 VLYGGKSAEHEVSLQTAFSVIGAVQLDKFEIQPIYITNEGEWISGPALTEPIRFAEQLRF 66 Query: 46 --------------------------LAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIP 78 L + D + F +LHG GEDG +Q LE+L++P Sbjct: 67 LDGETTHLSQTEGEPSHGEWINPGEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLP 126 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYV 129 Y +G+L+SA +MDK+ K+V + +P + D + ++ P Sbjct: 127 YVGNGVLSSAAAMDKIIMKKVFADAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVF 186 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP GSS+GI +++ + ++ ++ + IE+ V Sbjct: 187 VKPANLGSSVGITKATSKEALAASINEAFQFDRRIVIEQGVVAREIEIAVLGNDTPVCSV 246 Query: 190 TEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 +P+ FY Y+ KY+ + +PAKI + ++++ A A+ + G+ R+ Sbjct: 247 PGEILPEDGLAPFYDYKTKYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLVRA 306 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF ++ E+N PG TP S++P + +G + L+ +VE A Sbjct: 307 DFFLT-QDNQILLNEVNTMPGFTPYSMYPLLWNESGIPYAALIERLVELA 355 >gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 345 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 133/336 (39%), Gaps = 46/336 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L G SSE ++SL S + L + +K+ + +++ + K D Sbjct: 6 ILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLVRD 65 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + +HG +GEDG +Q +L++ + Y +G+L+SA Sbjct: 66 IKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ S + + + NR F I P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVGVS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200 + + + + + ++L+E+ + G E + + + F Sbjct: 186 KVTSKEELLEA--GYLALKYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHTFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ KY S + LP + D KE Q A++ GC G +R D + + Sbjct: 244 DYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFY-GEDGNFYVN 302 Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F + +F E+L +++D Sbjct: 303 EINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDD 338 >gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001] Length = 365 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 142/351 (40%), Gaps = 58/351 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49 ++ GG S E +S+ S A+AL + VS +D VL Sbjct: 2 GLVFGGASGEHAISIRSAATVAAALRRGENGRRYAVSCFYIDPQGRWWGPELAEQVLDQG 61 Query: 50 KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 P ++ F VLHG GEDG +Q + L+++P+ SG+ Sbjct: 62 TPASPEQLASAPARPGFQGFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGV 121 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135 L SA+ MDK K +++ +P P V + + P +KP Sbjct: 122 LGSAVGMDKQAMKAALAAAELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANL 181 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD----VTE 191 GSS+GI + L ++ +L++EQ V EL C V G V Sbjct: 182 GSSVGISKATDRDGLLAGLRSAA--ALDPRLVVEQGVTARELECAVRGGGPRPLEASVLG 239 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250 +D+Y Y KYS S V+PA +P I + + +A A +A+ G++R DF + Sbjct: 240 EIRYDADWYDYATKYSEGRSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYT 299 Query: 251 -----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D +++ EIN PG T S++P + +G L+ ++ A Sbjct: 300 APAPGDGGEGRLWLNEINTLPGFTSQSMYPMLWEASGVPLDTLVDGLITAA 350 >gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4] gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4] Length = 325 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 29/321 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFK---------VSQIDVDRSVGLVLAHLKP 51 +A++ GG SSE VSL S S ++ + V Q+++ + + Sbjct: 5 IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D A+ +HG GE+G++Q EL+ +PY+ G+LA+A++ +K Q + Sbjct: 65 SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124 Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S++ + I P +KP GGSS G+ +K + + + + Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAIEK 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214 + GD+++IE ++ G E+TCG+ + + + Sbjct: 185 AF--TEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEVVPKNEFFDFDAKYKGEVEEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA+I + + VQ+L + +GC+GI R D++ + LE+N PGMT S Sbjct: 243 TPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATSFI 301 Query: 275 PEMAAYAGYSFRELLLWMVED 295 P+ A AG ++++ ++E+ Sbjct: 302 PQQVAAAGLDIKDVMTEIIEN 322 >gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 382 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 71/341 (20%), Positives = 131/341 (38%), Gaps = 49/341 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +A+L GG SSE +VS S A++ + V+ + + ++ A Sbjct: 7 IAMLFGGNSSEHDVSKRSAHNIYDAMDKEKYNVTVFLISKDGIMINAEDSWRVFEGEDED 66 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D + V+HGN GEDG +QA+ LL+ PY G Sbjct: 67 EIVAAAKEKMDLSNPLAPIAVLGEMANIDFFYPVVHGNLGEDGTLQALFRLLKKPYLGPG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGG 136 I ASA+S DK +K++++ GV + + L S +K G Sbjct: 127 IAASAMSFDKDLTKRILNQAGVRNTNYVLLTDQNYQDYTYDELVKELDSEVLFVKAASQG 186 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEI 192 SS+G+ + + L S +++ + + + + Sbjct: 187 SSVGVSRVTNEDEYKAALKDSFQYDYKILVEGALDKPREVFISILGNENPRASRLGGIVL 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + LP ++ + E+ +A A++A+G G++R DF+ D Sbjct: 247 PEEDVWYDYNNKFVDASGMVFELPVELDQALTDEITDMALRAYKALGLVGLTRMDFMID- 305 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + E N PG T +S++P+M +G S+ L+ ++ Sbjct: 306 KNGVPYLGEPNTLPGFTNISLYPQMWEVSGISYTHLIDELI 346 >gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 329 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 127/322 (39%), Gaps = 28/322 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS S + ++ F + + R V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S + T + Q + P +KP GGSS+ I + + + Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + + + + C ++ D S + V D + S Sbjct: 186 VADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEVVAHDTFFDYDAKYYGKSDE 245 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I ++ + VQ + + C G R D++ LE+N PGMT S Sbjct: 246 ITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMTEASF 304 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG +L+ +++ Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326 >gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001] Length = 316 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 15/308 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+ GG+S EREVS SG A AL AG DV + LA + + F VLHG Sbjct: 6 VVVIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG ++ ILEL +PY + A + DK +K+ G+ S+ + + Sbjct: 66 VAGEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHD 125 Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +KP GGS+ G+ +++ + +P L + + + D+ LIE+ Sbjct: 126 LGAAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEAL--MACFAYHDEALIER 183 Query: 171 YVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 V G E+ GV + + + + Y Y +Y+ PA+I +E Sbjct: 184 LVTGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAA 243 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R+A AH+ +G R +SR+D + +V LE NV PGMT S +P AG F + Sbjct: 244 RVAVAAHRTLGLRDLSRTDAIVTTE-GEVVVLETNVAPGMTLTSTYPMALEAAGLGFGDF 302 Query: 289 LLWMVEDA 296 + A Sbjct: 303 CRDLAAAA 310 >gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116] gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116] Length = 329 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGF-----KVSQIDVD-RSVG 43 +L GG SSE E+SL S L ++ G+ ++ +D + + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDPNQKKLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + QS+ + + Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 + +Q+L+E+ V EL P FYSY+ KYS+ + Sbjct: 187 F--GYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLADCINTA 328 >gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM 20707] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 28/322 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS S + ++ F + + R V Sbjct: 6 IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 A + LA+ +HG GE+GL+Q L++L IPYT G+L AL+ +K ++ Sbjct: 66 ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125 Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 G+ + S + T + Q + P +KP GGSS+ I + + + Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + + + + C V+ D S + V D + S Sbjct: 186 VADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEVVAHDTFFDYDAKYYGKSDE 245 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + + VQ + + C G R D++ LE+N PGMT S Sbjct: 246 ITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMTEASF 304 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ AG +L+ +++ Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326 >gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp. lavendulae] Length = 345 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 154/346 (44%), Gaps = 53/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRSVGLVL 46 + +L GG S ER+VSL+SG + A AL + G +V +D D G + Sbjct: 3 IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEV 62 Query: 47 AHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 P DL F LHG +GEDG VQ LE + Sbjct: 63 GKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVR 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133 +T +G A A + +K R++ V+++ GVPV L + + P P V KP+ Sbjct: 123 FTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPV 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS+ + + Q + LL+E ++ G E T GV+G L V EI Sbjct: 183 ADGSSVSVHRADSLAELERLAPQMRADGGD--LLVEPFLSGREFTVGVVGGQVLPVIEIE 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFD 251 + + Y KY + V PA+IP + +Q+LA AH+A+G SR+DF D Sbjct: 241 LSTP-LFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCD 299 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + LE+N PG+T S+ P A+ AG+++ +L +V A+ Sbjct: 300 AA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 344 >gi|312198489|ref|YP_004018550.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c] gi|311229825|gb|ADP82680.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c] Length = 318 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 139/297 (46%), Gaps = 16/297 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ L+ G V DVD S L P + VLHG Sbjct: 9 VLAGGLSPEREVSLRSGRRLCDELDRIGVDVELRDVDGSTLPALDADPPAVVIPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +L+L +PY + A + DK +K +S+ G+ P++ + R Sbjct: 69 GEDGTIREVLDLYGLPYVGATPAACRGAFDKATAKAALSAAGIATPPAVTLPREAFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGS+ G+ ++ + L + + + D LIE+ V Sbjct: 129 AAALIDRVVTRLGLPLVVKPRAGGSAFGVGRVEDAGQLAEAL--MACFGYHDCALIERAV 186 Query: 173 DGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ GV+ VT P + Y Y +Y+ +T +PA++ D+ + Sbjct: 187 AGVEIAVGVVDTGDGPVTLPAVEIQPVTGVYDYAARYTPGATTFHIPARLDEDVLRAAAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A AH+ + R +SR+D + D +LE+NV PG+T S +P AG Sbjct: 247 AAVAAHRVLDLRDLSRTDLIIDA-DGVAQFLEVNVAPGLTATSTWPMALKAAGLDLA 302 >gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105] Length = 405 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 145/373 (38%), Gaps = 80/373 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S + + F+ I + + ++ + P Sbjct: 30 IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 89 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG +GEDG +Q +L Sbjct: 90 PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 149 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------- 124 E++ +PY G+LASA MDK +K ++ + G+PV P I V+ + DS Sbjct: 150 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 209 Query: 125 --------SPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171 P +KP + GSS G+ + ++ L + H ++L+E+ Sbjct: 210 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 269 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----------THVLPAKIPL 221 + E+ C V+ D + P + + +PAK+P Sbjct: 270 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 329 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +EV+R+A A A+ G+SR D V EIN PG TP+S++ + Sbjct: 330 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTEE-GTVIVNEINTLPGFTPISMYSKAWEAT 388 Query: 282 GYSFRELLLWMVE 294 G S+REL+ ++E Sbjct: 389 GVSYRELITTLIE 401 >gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305] Length = 400 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 145/373 (38%), Gaps = 80/373 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 + VL GG + E +S S + + F+ I + + ++ + P Sbjct: 25 IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 84 Query: 52 ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72 D F VLHG +GEDG +Q +L Sbjct: 85 PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 144 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------- 124 E++ +PY G+LASA MDK +K ++ + G+PV P I V+ + DS Sbjct: 145 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 204 Query: 125 --------SPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171 P +KP + GSS G+ + ++ L + H ++L+E+ Sbjct: 205 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 264 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----------THVLPAKIPL 221 + E+ C V+ D + P + + +PAK+P Sbjct: 265 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 324 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + +EV+R+A A A+ G+SR D V EIN PG TP+S++ + Sbjct: 325 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTEE-GTVIVNEINTLPGFTPISMYSKAWEAT 383 Query: 282 GYSFRELLLWMVE 294 G S+REL+ ++E Sbjct: 384 GVSYRELITTLIE 396 >gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301] gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942] gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 347 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 67/351 (19%) Query: 1 MAVLMGGISSEREV---------------SLSSGKACASALEDAGFKVSQIDVDRSVGL- 44 + +L GG S E EV S ++V +D+ G Sbjct: 6 VGLLFGGRSGEHEVSIRSAAAIASALADPS-----------NRDRYQVLPFYIDKEGGWH 54 Query: 45 -------VLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 VLA+ KP ++ F +LHG GEDG +Q +L L++ P Sbjct: 55 SGETAAQVLANQKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRP 114 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------------MDSQHLISP 126 + SG+L SAL MDK+ KQ + +P + VNR + + Sbjct: 115 FVGSGVLGSALGMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGY 174 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P +KP GSS+GI ++ + L Q+++ + + + D Sbjct: 175 PCFVKPANLGSSVGIAKVRDRAELEAALDQAAALDRRLIIEAAIDNPREVECAVLGNDYP 234 Query: 187 LDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + DFY YE KY+ + ++PA++ ++ +++Q LA A QA+ G+SR Sbjct: 235 QASILGEITYDSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGLSR 294 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF D ++F EIN PG T +S++P++ A +G +F +L+ +++ A Sbjct: 295 LDFFLDSQ-GQIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQLA 344 >gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991] Length = 392 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 135/354 (38%), Gaps = 62/354 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43 + V GG S E E+S+ S A+ ++V + + + Sbjct: 17 VVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFENLD 76 Query: 44 --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77 + + D+ F +LHG GEDG Q L L I Sbjct: 77 KVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLSTLHI 136 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIK 131 PY +L A+ DK+ KQ++ G+PV P + + P ++K Sbjct: 137 PYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPLIVK 196 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCGVMG 183 P GSS+G+ ++ + + ++++ ++ I V G E TC Sbjct: 197 PANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDEQTCEASV 256 Query: 184 DASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + ++ + +D Y +N+ +PA+I ++ E+Q LA + + G Sbjct: 257 LEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLCASG 316 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R DFL++ ++ ++ EIN PG S+ + + F +L+ +V+ A Sbjct: 317 TGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIA 366 >gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK] Length = 330 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 131/325 (40%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44 +L GG S+E EVSL S L+ G +++++ DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + IK GSS+G + + + + Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDELAEAVNNAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNS--T 212 + +Q+LIE+ + EL V P+ FYSYE KYS+ + T Sbjct: 188 --TYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V + + + ++ A A + + +SR DF ++ EIN PGMTP+S Sbjct: 246 TVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP+M + G+SF + ++ A+ Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKAAA 329 >gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329] Length = 329 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L KV+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKKLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + +K + GSS+G + + Q+I + + Sbjct: 127 DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 + DQ+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + ++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|257784124|ref|YP_003179341.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469] gi|257472631|gb|ACV50750.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469] Length = 333 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 138/328 (42%), Gaps = 36/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ER SL SG + ALE G++V +D D + L KPD+AF LHG Sbjct: 5 VAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFVCLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V A+LE L+IPY S + + +K +V ++ + + Sbjct: 65 AGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQIVLT 124 Query: 121 QHLIS--------------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 P +KP+ GGS++G+ + + L + Sbjct: 125 ASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKAL--LGAL 182 Query: 161 NHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 D ++I+Q+VDG+E++ V Y + + H P Sbjct: 183 GFDDSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKGIYDTDARLDPERIEHFCPV 242 Query: 218 K---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + P+ + ++R A A GCR ++R DF++D V + + PG+ Sbjct: 243 RSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWD--GHHVMVMGLKTFPGL 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T S+ P AGY+ ++L +VE A Sbjct: 301 TETSLVPMAIEAAGYAVEDVLAQLVEGA 328 >gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785] Length = 361 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 7 IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 375 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 21 IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 80 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I + V++ A QA C G++R D + Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 360 >gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF4000_47G05] Length = 345 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 53/330 (16%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGL------------------------------ 44 S+ S ++ +A++ + V +D Sbjct: 2 SVVSARSVYAAIDRERYNVVLAGIDLQGRWCFGGKEARLLESATVVSDELVPARLSGVGA 61 Query: 45 --------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 L + D+ F +LHG +GEDG VQ +LEL + Y +G+ ASAL MDK + Sbjct: 62 FLVSEDGDNLPDSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALA 121 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKD 147 + + ++ G+P ++ R P +KP GSS+GI + Sbjct: 122 RAIFAASGLPQTQYTVIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDR 181 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 Q + + L +S + +L++E+ V+ E +P ++FY Y Sbjct: 182 QGLQVGLELAS--RYDTKLIVERSVENARELECAVLGNEFPQASGVGEIIPGAEFYDYTT 239 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 KY S V+PA + + +Q+LA +AI C G++R DF V EIN Sbjct: 240 KYIDDRSELVIPAVLEKSKTETIQQLAIQTFKAIDCSGLARVDFFMC-SDGSVLVNEINT 298 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG TP+S++P++ A AG ++ +L+ +++ Sbjct: 299 MPGFTPISMYPKLWAAAGIAYGDLIDRLIQ 328 >gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4] gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4] Length = 329 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 34/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-------------EDAGF-----KVSQIDVD-RSVG 43 +L GG S+E E+SL S L + G+ ++ +D++ + + Sbjct: 7 LLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEIKSEGWITNQGELVYLDLNTKKLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 +L+ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + Q++ + + Sbjct: 127 GIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 + +Q+L+E+ V EL P FYSY+ KYS+ + Sbjct: 187 F--GYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYSNSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + +++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295 S+FP+M G+ F + L +E Sbjct: 304 SMFPKMLQNNGHKFHQFLADCIET 327 >gi|323453883|gb|EGB09754.1| hypothetical protein AURANDRAFT_24617 [Aureococcus anophagefferens] Length = 317 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 18/308 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER++SL G A AL G++V+ +D+ ++ LV A + D+ F LHG Sbjct: 11 IAVLCGGTSAERDLSLKGGADVAEALRARGYRVTIVDLTPALDLVAALRRVDVVFVCLHG 70 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ LE+L+IPYT SG++ ++ +DK+R+K+ + C I + Sbjct: 71 PLGEDGSVQGFLEVLKIPYTFSGVVTQSVCVDKVRTKRYLRGC--EPVRLIPDQLLADGA 128 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + PP ++K + GSS G+ + Q G + L+EQ++ G++L Sbjct: 129 PLRVPPPCMVKDPQSGSSRGVWKCDTADEVRAAAAQC----AGPRCLVEQFISGVDLVVC 184 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLN------------STHVLPAKIPLDIYKEVQ 228 V +L E K + PA +P + E + Sbjct: 185 VNDGEALPAMEFKTDKDWQDLASKNDLWGWAGADGSDGARAAIEKICPATLPAAVVDEAR 244 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A + + G +F V+++E++ P MT S+ A AG SF ++ Sbjct: 245 DTALAIYDFLEVEGAMNFEFRVTVDGAAVYFVEVSSVPAMTRASVHACCAEAAGLSFEDV 304 Query: 289 LLWMVEDA 296 ++ A Sbjct: 305 AERILLTA 312 >gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9] gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9] Length = 330 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 132/325 (40%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44 +L GG S+E EVSL S L++ G +++++ DR++ + Sbjct: 8 LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 + +HG GE G +Q+ LE+ +PY +S +K+ +K + Sbjct: 68 GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127 Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P I +K GSS+G + + + + Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDELAEAVNNAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNS--T 212 + +Q+LIE+ + EL V P+ FYSYE KYS+ + T Sbjct: 188 --TYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V + + + ++ A A + + +SR DF ++ EIN PGMTP+S Sbjct: 246 TVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP+M + G+SF + ++ A+ Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKTAA 329 >gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886] Length = 332 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 85/329 (25%), Positives = 139/329 (42%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAH------------- 48 +L GG S+E EVSL S S L V ++++ ++ G + Sbjct: 8 LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67 Query: 49 -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + D A +HG GE G +Q++ EL +PY AS + +K+ SK + Sbjct: 68 VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127 Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + D +K GSS+G + + ++ + + Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAVASA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYS--SLNS 211 + +Q+L+E+ V EL V P+ FY+YE KYS S + Sbjct: 188 F--GYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V P + + +++ A A + + +SR DF P V EIN PGMTP+ Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTPE-GDVLLNEINTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP++ + G++F E L SC+R Sbjct: 305 SMFPKLVEHNGHTFSEYLE------SCIR 327 >gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026] Length = 361 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPQME 66 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533] Length = 361 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I + V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346 >gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326] Length = 330 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 92/329 (27%), Positives = 139/329 (42%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------VG 43 ++ GG SSE EVSL S S LE F V ++++ + Sbjct: 8 LICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGTLN 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 A +K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + ++ +K + GSS+G + I L + Sbjct: 128 GIPNTPYVFLSSNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQALDDA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSS--LNS 211 ++ DQ+LIEQ V EL P+ FY+YE KYSS ++ Sbjct: 188 F--SYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSHST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + ++ + + R +SR DF P ++ E+N PGMTP+ Sbjct: 246 TDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTPE-GDIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M + G+SF E L A C+R Sbjct: 305 SMFPKMLEHNGHSFSEFL------ADCVR 327 >gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum SS14] gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum SS14] gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 396 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 153/347 (44%), Gaps = 58/347 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VS+ S + A L V I + R Sbjct: 4 VTLLYGGRSAEHDVSVRSARFVARTLC-LQHTVMLIGITRRGVWYAQPACALEQLCTGTV 62 Query: 46 ------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78 + D+ F VLHG++GEDG VQ +LE+L++P Sbjct: 63 ALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQVP 122 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129 Y G+ ASAL+MDK+++K + + G+PV P + + + P Sbjct: 123 YVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLF 182 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP + GSS+G ++ + + + W + +L+E+YV E+ C + G+ V Sbjct: 183 VKPAQAGSSVGASAVQTRAPLIPAIEAAFQW--DEVVLVERYVRAREIECALSGNGPYTV 240 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + Y+ + +++ A + Y+++ LA A++A+G G++R Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DF + +V+ E+N PG T +S+FP++ AG + ++L+ ++ Sbjct: 301 DFFLLE-TGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233] Length = 367 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 60/357 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S E VS S + ++ F V+ + + + + Sbjct: 8 VAVVFGGRSGEHPVSCISAAGVLANIDTDLFDVTAVGITPAGRWLQMDPAAIPTTGGPTL 67 Query: 46 -------------------LAHLKPDL----------AFNVLHGNFGEDGLVQAILELLE 76 L + P + F VLHG +GEDG +Q +LEL Sbjct: 68 PEVSTGSAVALPVDPTAAALVSIDPSVDRSAVVDVEVVFPVLHGPYGEDGTIQGLLELAG 127 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKP 132 +PY +G+LASA +MDK +K+++++ G+PV +++ T + + P +KP Sbjct: 128 VPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVFVKP 187 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------- 185 + GSSLG+ + + + + + ++L+E V G E+ CGV+ Sbjct: 188 ARAGSSLGVSRVAEWAELDRAIAIARET--DPKVLVEAAVVGREVECGVLEHPDGRIEAS 245 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + ++ +PA +P ++ + L+ A A+ +G++R Sbjct: 246 PPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQGLAR 305 Query: 246 SDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 DF P +V E+N PG TP+S++P M A AG S+R+L+ ++ A Sbjct: 306 VDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTALAR 362 >gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862] Length = 382 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 49/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A+ GG SSE +VS S + A++ + V+ + + ++ A Sbjct: 7 IAMFFGGNSSEHDVSKRSARNIYDAMDKEKYNVTVFLISKDGIMINAADSKRVFDGEDED 66 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 + DL + V+HGN GEDG +QA+ LL+ PY G Sbjct: 67 TIVAEAKSKMDLKNPLAPIAVLGEMSEIDLFYPVVHGNLGEDGTLQALFRLLQKPYIGPG 126 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGG 136 ASA+S DK +K++++ G+ + + L + +K K G Sbjct: 127 TAASAMSFDKDLTKRILNQAGIRNTKYVLLTDQNFQDYTYEGLVKELGTEVLFVKAAKQG 186 Query: 137 SSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 SS+GI + L L + V L + L + Sbjct: 187 SSVGISRVTNAAEFEAGVKDALQYDYKVLVEAALTKPREVFISILGNEQPRASRLGGIVL 246 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + LP ++ D+ KE+ +A A++A+G G++R DF+ D Sbjct: 247 PEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALNAYKALGLVGLTRMDFMIDA 306 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + E N PG T +S++P+M +G S+ L+ ++ Sbjct: 307 -DGTPYLGEPNTLPGFTNISLYPQMWEVSGISYTNLIDEIIN 347 >gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277] gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC 33277] Length = 330 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 132/322 (40%), Gaps = 30/322 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +AV+ GG S E VSL S S L F + ++R Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 42 -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 L ++ D A+ +HG GE+GL+Q L+++ IPY L +L+ +K + + Sbjct: 66 SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 101 SSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 S G+ + S+ D + P +KP GGSS+ + + + + Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIG 185 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTH 213 Q+ + G++++IE+ + G E+TCG V + + Sbjct: 186 QAF--SEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKYNGAVEE 243 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+I + + +Q + ++ + RGI R D++ LE+N PGMTP S Sbjct: 244 ITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPTSF 302 Query: 274 FPEMAAYAGYSFRELLLWMVED 295 P+ A +E+L ++ D Sbjct: 303 IPQQVRAAEMDMKEVLCTIIRD 324 >gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens] Length = 265 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 7/267 (2%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 SG AL G D L D F LHG +GEDG VQ LELL Sbjct: 1 MSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHGRYGEDGTVQGALELLG 60 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLK 134 IPYT G++AS+++MDK+ +K++ G+P LV + P ++KP + Sbjct: 61 IPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETRAALQALGAPMIVKPSR 120 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTE 191 GS++G+ + + + +S + ++L E++++G E TC A Sbjct: 121 EGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETTCPVLGTGEGAHALPVI 178 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 V Y Y+ KY + ++ + P+ +P + E++R+ A + +GCRG SR+D + Sbjct: 179 RIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAFRTLGCRGWSRADIMIR 238 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMA 278 RK F LEIN PGMT S+ P A Sbjct: 239 ASDRKPFLLEINTSPGMTGHSLVPMSA 265 >gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis BB-12] Length = 394 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 141/372 (37%), Gaps = 77/372 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG + E +S S + AL+ F+ I + ++ + P Sbjct: 22 VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 81 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ LHG FGEDG +Q + E Sbjct: 82 PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 141 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119 ++ +PY G+LASA MDK +K ++ + G+PV P I ++ D Sbjct: 142 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 201 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDGIE 176 ++ + P +KP + GSS G+ +++ H ++L+EQ +D E Sbjct: 202 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 261 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ D T A+P + +PAKI D+ Sbjct: 262 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 321 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D V EIN PG T +S+FP+ G Sbjct: 322 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 380 Query: 285 FRELLLWMVEDA 296 FR ++ ++E A Sbjct: 381 FRTVVTDLIEGA 392 >gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis AD011] gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis V9] Length = 378 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 141/372 (37%), Gaps = 77/372 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51 +AVL GG + E +S S + AL+ F+ I + ++ + P Sbjct: 6 VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 65 Query: 52 --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73 D+ LHG FGEDG +Q + E Sbjct: 66 PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 125 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119 ++ +PY G+LASA MDK +K ++ + G+PV P I ++ D Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 185 Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDGIE 176 ++ + P +KP + GSS G+ +++ H ++L+EQ +D E Sbjct: 186 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 245 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224 + C V+ D T A+P + +PAKI D+ Sbjct: 246 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 305 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 V+ A A A+ G+SR D V EIN PG T +S+FP+ G Sbjct: 306 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 364 Query: 285 FRELLLWMVEDA 296 FR ++ ++E A Sbjct: 365 FRTVVTDLIEGA 376 >gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus gasseri ATCC 33323] gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323] Length = 375 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 21 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 80 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I ++V++ A QA C G++R D + Sbjct: 259 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360 >gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri 224-1] gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22] Length = 361 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 7 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 66 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 67 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 186 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I ++V++ A QA C G++R D + Sbjct: 245 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 304 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 305 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346 >gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546] Length = 330 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 135/329 (41%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG SSE EVSL S S LE + F V ++++ Sbjct: 8 LLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGTLN 67 Query: 50 ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P I ++ +K + GSS+G + + + L + Sbjct: 128 GIPNTPYIFLSENDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQALNDA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLNS 211 + DQ+L+EQ V EL P+ FYSYE KYS S + Sbjct: 188 F--GYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASSHSK 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ + + R +SR DF P ++ E+N PGMTP+ Sbjct: 246 TEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTPEGN-IYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M G+ F E L A C+R Sbjct: 305 SMFPKMLENNGHKFSEFL------ADCVR 327 >gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25] Length = 329 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L V+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + + + + Sbjct: 127 GIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDKLSNAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 DQ+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + +Q + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTQAQLDAIQHASERVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16] Length = 330 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------VG 43 +L GG SSE EVS+ S S L+ F V ++++ + Sbjct: 8 LLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGTLN 67 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + +K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + +K + GSS+G + + + L + Sbjct: 128 GIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSLNDA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYS--SLNS 211 + DQ+L+E+ V EL P+ FYSYE KYS S ++ Sbjct: 188 F--GYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSHST 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + ++ + + R +SR DF P +++ E+N PGMTP+ Sbjct: 246 TDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTPE-GEIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+SF E L V+++ Sbjct: 305 SMFPKMLEHNGHSFSEFLADCVKNS 329 >gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 344 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 44/333 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 VLMGG S+E +VS+ SG A++ + + + +D+ Sbjct: 8 VLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKANFSEN 67 Query: 47 -----------AHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 P D+AF LHG +GEDG +QA+LE IPYT G+LAS Sbjct: 68 YFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLAS 127 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGI 141 AL+MDK++SK++ + G+P P ++ + + P VIK GGSS+GI Sbjct: 128 ALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGI 187 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + K ++LL E+++ G E +CG + + Y Sbjct: 188 GIAKNLDEAGKIAQDLFKD--SNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYF 245 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + V PA+ ++ +Q L AH A+G G SR+D ++F +E Sbjct: 246 DFEAKYNGECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRIT-KDGELFAIE 304 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 N PGMTP S+ P+ AA G ++ +L+ +++ Sbjct: 305 TNTLPGMTPTSLLPQQAACVGITYSQLIDLIID 337 >gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 355 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 101/337 (29%), Positives = 161/337 (47%), Gaps = 44/337 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++M G+SSE+EVSL SG+ S ++ + I +D R V Sbjct: 11 VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70 Query: 43 GLVLAHL-----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 LA + DL F LHG +GEDG +Q +LELL+IPYT SG+LASAL M Sbjct: 71 EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGI 141 DK+ S++V+ G+ V ++ V R + I P V+KP + G S G+ Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCSTGV 190 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY- 200 + + L + W L+E+++DG+E+TCG++G + + Sbjct: 191 KKVMSRAGLSDALNGAFLW--DCTALVEEFIDGMEVTCGILGGNPPTALTPSETIATSDV 248 Query: 201 -SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 S E K+ + PA++P + ++Q +A A +A+ +G +R D +V Sbjct: 249 LSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSA-GRVLV 307 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE N QPGMTP ++ AA +G + L+ ++E A Sbjct: 308 LEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein [Carboxydibrachium pacificum DSM 12653] Length = 383 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 79/358 (22%), Positives = 129/358 (36%), Gaps = 71/358 (19%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48 GG S E EVS+ +G + ++ + V R Sbjct: 2 FGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKDLLDISNYKDIPSLLK 61 Query: 49 --------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+ F HG GEDG +Q + +L Sbjct: 62 KCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLFQLAN 121 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127 IPY SG++ SA MDK+ K + + +P+ + R + + + P Sbjct: 122 IPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESKLKYP 181 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 +KP GSS+GI K + + + ++ ++ E D +E+ C VMG Sbjct: 182 MFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR-KIIVEEAVKDPMEVNCSVMGIDRD 240 Query: 188 DVTEIAVPKSDFYSYELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + +PA IP + KE+Q LA Q + Sbjct: 241 LEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKVFQIL 300 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C G++R DFL + + KV+ EIN PG S + G SF +L+ ++E A Sbjct: 301 DCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIEYA 354 >gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46] gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46] Length = 382 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVL------------- 46 +A+L GG S+E EVS+ S A AL+ + V+ I +D+ L Sbjct: 5 VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ VLHG GEDG VQ L+L +PY S Sbjct: 65 REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGS 137 G++ SA +MDK +K+++ G+P+ P +T + L S +KP GS Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 S+G+ + L + ++ D+ ++ + + + P Sbjct: 185 SVGVSRVADAGQFDQALAHAFAY---DEKILIERAVPRAREIEFAVLETAEGEVRVSPPG 241 Query: 198 DFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + +PA + + + + LA A +A+ C G++R D Sbjct: 242 EIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDL 301 Query: 249 LFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DP + +F E+N PG T +S++P++ AG + L+ ++ Sbjct: 302 FLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 395 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 146/366 (39%), Gaps = 76/366 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----GLVLAHL------- 49 +AVL GG+S E EVS+ +G ++ + + V + G + Sbjct: 8 IAVLFGGVSVEHEVSVITGMQVVENMDKTKYNPIPVLVTKEGKFLSGDAIKDFGNIKRNK 67 Query: 50 ----------------------------------------KPDLAFNVLHGNFGEDGLVQ 69 K D F LHG FGEDG VQ Sbjct: 68 LEDAKEVFFKPVRGDFNLYTEEEQGGGLFSKKTSGTVVFAKIDAVFVALHGTFGEDGAVQ 127 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHL 123 IL+ + IPYT + A+A+ MDK+ K V S +P+ R Sbjct: 128 GILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTDYFYFYRDFYKFDIVKAEAEK 187 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--- 180 I P +KP GSS+GI K + + + + ++ ++ + E+ C Sbjct: 188 IGYPVFVKPANLGSSVGISKAKNEAELKDAVEVAMHYDR-KIIVEKSVEKPREINCAVLG 246 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYKEVQRL 230 D +TE + DF +Y+ KY N LPA IP ++ +EV+RL Sbjct: 247 YEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMKNQKKNLPANIPDEMTEEVKRL 306 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A LA ++I G++R DFL D + KV+ EIN PG SI + G SF+EL+ Sbjct: 307 AKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPG----SIAFYLFEPMGISFKELID 361 Query: 291 WMVEDA 296 ++ A Sbjct: 362 RQIDLA 367 >gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01] Length = 329 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVG---------LVLAHLK-- 50 +L GG SSE E+SL S L V+++++ L L K Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQKKLC 66 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + QS+ + + Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 + +Q+L+E+ V EL P FYSY+ KYS+ + Sbjct: 187 F--GYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + ++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLADCINTA 328 >gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B] gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 390 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 137/365 (37%), Gaps = 76/365 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK------ 50 +AV+ GGIS E EVS+ +G L+ F I + + L K Sbjct: 4 VAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEGK 63 Query: 51 ----------------------------------------PDLAFNVLHGNFGEDGLVQA 70 D F LHG FGEDG +Q Sbjct: 64 YREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQG 123 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------RFTMDSQHL 123 + E + IPY G+LA A MDK+ K + + +PV + + Sbjct: 124 LFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKKCEK 183 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---- 179 + P ++KP GSS+GI +K + L +S+++ ++ + D E+ Sbjct: 184 LGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDK-KIIVEKCLTDHREINVAVLG 242 Query: 180 --------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + + K S S N LPA + +++ ++ +LA Sbjct: 243 DQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQLA 302 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +AI G+SR DFL + +V+ EIN PG SI + G SF++LL Sbjct: 303 KESFKAIDATGVSRIDFLL--KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDLLTK 356 Query: 292 MVEDA 296 ++E A Sbjct: 357 LLEIA 361 >gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3] Length = 329 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L V+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNTKKLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 L D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + +++ + + Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 +Q+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + + + ++ + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLADCIHTA 328 >gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus Thermophilus Hb8 Length = 319 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 147/323 (45%), Gaps = 35/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48 ++ GG+S E EVSL S + + F + + +L Sbjct: 5 LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 61 Query: 49 ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + D+ F +LHG FGEDG VQ LELL PY +G+ ASAL DK SK+ Sbjct: 62 EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKR 121 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 V++ GVPV P + V + P + +KP GSS+GI +++ Q + L + Sbjct: 122 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 180 Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + ++ ++E+ + + E+ ++ FY YE KY+ + ++ Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + VQ LA A++ +G RG +R DF +++ E+N PG TP S +P Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGXARVDFFLAE--GELYLNELNTIPGFTPTSXYP 296 Query: 276 EMAAYAGYSFRELLLWMVEDASC 298 + G ++ ELL +VE A Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319 >gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 127/325 (39%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L V+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + + + Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDKLSNAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 DQ+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + +Q + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTQIQLDSIQHASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218] Length = 334 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 86/329 (26%), Positives = 132/329 (40%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVSL S L F V ++++ + Sbjct: 8 LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + Sbjct: 68 GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + IK + GSS+G K + + Sbjct: 128 DIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCY--KVTKEDQIAAAID 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +++++ +Q+L+EQ V EL P+ FYSYE KYS+ + + Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245 Query: 214 VLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + + ++A + R +SR DF P V+ E+N PGMTP+ Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPE-GHVYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M G+ F E L A C+R Sbjct: 305 SMFPKMLENNGHQFDEFL------ADCVR 327 >gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891] Length = 330 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 133/325 (40%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVL--------------- 46 +L GG SSE EVSL S S LE F V ++++ Sbjct: 8 LLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGTLN 67 Query: 47 ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G AS S +K+ SK + Sbjct: 68 TDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P I + +K + GSS+G + + + L + Sbjct: 128 GIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTELSQLQAALDNA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----IAVPKSDFYSYELKYSSLNSTH 213 + DQ+L+EQ V EL I P+ FYSYE KYS+ + + Sbjct: 188 F--GYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYSTESHST 245 Query: 214 VL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + ++ + + R +SR DF P S +++ E+N PGMTP+ Sbjct: 246 TKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTP-SGEIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+SF L V+ + Sbjct: 305 SMFPKMLENNGHSFAAFLANCVKTS 329 >gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823] Length = 321 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 140/319 (43%), Gaps = 30/319 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 + + GG SSE E+SL S + G++V I V V Sbjct: 4 VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62 Query: 47 -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 K D+ +HGN GE+G +QA+L++ +PY +S LAS LS DK Q ++ Sbjct: 63 YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122 Query: 102 SCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 GVPV S+ +N + I P +KP GSS GI + K + + L ++ Sbjct: 123 RFGVPVAKSLFLNSPKKFTNQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALDKA 182 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVL 215 GD ++IE ++ G E+TCG+ S VT + + S + Sbjct: 183 F--EEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEIVTENDFFDYEAKYLGQSQEIT 240 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA+IP I + V + + + + I+R DF+ + + +E+N PG + S+ P Sbjct: 241 PARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFSAASLVP 298 Query: 276 EMAAYAGYSFRELLLWMVE 294 +M A AG S + + E Sbjct: 299 QMLAEAGISIIDFWTEIFE 317 >gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586] Length = 334 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 132/319 (41%), Gaps = 36/319 (11%) Query: 3 VLMGGISSEREVSLSSGKACAS--ALEDAGFKVSQIDVDRSVGLVLA------------- 47 +L GG SSE E+SL S AL F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLALTPQ-FNVIRVEMKKDGWFSEQGELVYLDTNSATL 66 Query: 48 -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 67 NGDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126 Query: 103 CGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P P + + + T +K + GSS+G + +++ I + Sbjct: 127 LDIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAIEA 186 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLN 210 + +Q+L+E+ V EL P+ FYSYE KYS S + Sbjct: 187 AF--GFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSHS 244 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T + + + +Q+ A + R +SR DF +++ E+N PGMTP Sbjct: 245 RTVIEAEHLTEAQHNLIQQCAARVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTP 303 Query: 271 VSIFPEMAAYAGYSFRELL 289 +S+FP+M + G+ F E L Sbjct: 304 ISMFPKMLEHNGHQFSEFL 322 >gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B] Length = 329 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43 +L GG SSE E+SL S L V+++++ + + Sbjct: 7 LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 ++ D +HG GE G +Q++ E+ IPY G AS+ S +K+ SK + Sbjct: 67 SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + +K + GSS+G + + + + + Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDKLSNAVNDA 186 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211 DQ+L+E+ V EL P FYSY+ KYSS + Sbjct: 187 F--GFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + +Q + + + R +SR DF +++ E+N PGMTP+ Sbjct: 245 TEVEAKNLTQVQLDSIQHASETVFRQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M G+ F E L + A Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328 >gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972] Length = 334 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 134/329 (40%), Gaps = 40/329 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE EVSL S L F V ++++ + Sbjct: 8 LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 LK D +HG GE G +Q++ EL IPY G AS+ S +K+ SK + Sbjct: 68 GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + IK + GSS+G K + + Sbjct: 128 GIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCY--KVTKEDQIAAAID 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +++++ +Q+L+EQ V EL P+ FYSYE KYS+ + + Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245 Query: 214 VLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + + ++A + R +SR DF P V+ E+N PGMTP+ Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPE-GHVYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S+FP+M A G+ F E L A C+R Sbjct: 305 SMFPKMLANNGHQFDEFL------ADCVR 327 >gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 375 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 48/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + ++ GG SSE EVS+ S ++ F V + + L Sbjct: 21 VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRRVLDNPKME 80 Query: 46 ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 + LK D+ F ++HGN GEDG +Q + +L+ P+ +LA+A+ Sbjct: 81 VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140 Query: 90 SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138 +MDK +K + GVPV I + +KP GSS Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + ++ + L ++ + D++L+E+ V G E+ V+G+ V + + Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258 Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S+ + + +PAK+P I ++V++ A QA C G++R D + + Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEA 318 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++V E+N PG T +S++P++ G + +L+ +++ A Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360 >gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 347 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 133/337 (39%), Gaps = 47/337 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52 +L GG SSE +++L S L ++ + +D+ D Sbjct: 6 ILCGGPSSEHDIALRSALNIVKNLNKDKYEKKIVYIDKEGKFSPTFKDFDPADEFSLVKK 65 Query: 53 ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + V+HG +GEDG +Q L+ + + Y +G+L+SA Sbjct: 66 IDKSTQASIADFLLEVSKEDLENTIILPVVHGTYGEDGTIQGFLDAVGLKYIGNGLLSSA 125 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGII 142 + MDK+ S + + F + P ++KP GSS+G+ Sbjct: 126 ICMDKVTSNDIFEKSKLRQAKYKYCYKEDFDDDFMDSCIAYVGLPLIVKPSANGSSVGVS 185 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY-- 200 ++ + + + +LL+E+ + G E+ V+GD+ + Sbjct: 186 RVENKKDFKKA--GLEALKYDRKLLVEELIIGQEIELAVLGDSDNIDVSDPAAYITDHVF 243 Query: 201 -SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 ++ KY S ++ LP K+ + ++ + A ++A GC G +R D + R+ + Sbjct: 244 LDWDAKYFSKSTREELPYKMDENDKQKAKDFARACYKAAGCEGFARVDIFY-GNDRQFYI 302 Query: 260 LEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295 EIN PG TP S F MA F +L +++D Sbjct: 303 NEINTFPGFTPSSFFARMAMNLYDVDFSSILDKLIDD 339 >gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila psittaci RD1] gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC] gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10] gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila psittaci 6BC] Length = 810 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 122/331 (36%), Gaps = 39/331 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S E ++SL S + L + V +DR Sbjct: 454 VGVVCGGKSCEHDISLLSARNVVRYLSPEYYDVQYFIIDRQGLWSKVSTIECEDYEGKGH 513 Query: 45 -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 A D +LHG FGEDG +Q LE++ PY +L S+++MDK+ +K Sbjct: 514 YVLSSEITEALTHVDFILPILHGPFGEDGTLQGFLEIINKPYAGPSLLFSSVTMDKIMTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148 ++ +S GVPV P + + P +K GSS+G+ + ++ Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + + + +S + + Sbjct: 634 ELKAKISEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYEEK 693 Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 A+I D+ V+ ++ I +G R DF D + E+ Sbjct: 694 YGLNGRASAQIQYDLDLSEESKIRVKEFTERVYRVIQGQGSCRVDFFLDDEGN-FWLSEM 752 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F A G++F +++ ++ Sbjct: 753 NPIPGMTQASPFLHDFARLGWTFEQIIHQLI 783 >gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0500_32L01] Length = 281 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 136/262 (51%), Gaps = 15/262 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ V S+ G+P Sbjct: 12 EFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTR 71 Query: 110 SILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 S++++R + + P +KP GSS+GI + + L + Sbjct: 72 SVVIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGI- 130 Query: 161 NHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++LIE V+ IE + + VP ++FY Y KY +T ++PA Sbjct: 131 -YDTKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 189 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P ++Q ++ A +AI C G++R DFL ++F EIN PG TP+S++P++ Sbjct: 190 DLPEATVSQIQEMSIRAFRAIDCSGLARVDFLIS-QDGEIFLNEINTMPGFTPISMYPKL 248 Query: 278 AAYAGYSFRELLLWMVEDASCL 299 AG S+ +L+ +++ A Sbjct: 249 WEEAGLSYPDLIDKLIQLALAR 270 >gi|221195322|ref|ZP_03568378.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185225|gb|EEE17616.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626] Length = 333 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 139/328 (42%), Gaps = 36/328 (10%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+MGG S ER SL SG+ + +L +GF V +D D + L KPD+AF +HG Sbjct: 5 VAVIMGGTSFERNFSLLSGRLVSESLARSGFDVLTLDADAHLVDTLRAEKPDVAFICMHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG V A+LE L IPY S + + +K ++ ++ + Sbjct: 65 AGGEDGAVPALLEFLRIPYVGSRPASCRAAWNKADMPFLMRRVYGKHESLVVWPPQLVLP 124 Query: 121 QHLIS--------------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 P +KP+ GGS++G+ + K + + L + Sbjct: 125 ASAFKDLGAAKALDIIPERLGGGSGFPLAVKPVHGGSAMGLSRVDKPEDLGHAL--MGAL 182 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPA 217 + D ++I+ +V+G+E++ V+G + V Y + + + H P Sbjct: 183 AYDDSVIIQHWVEGVEVSVTVLGTPGSEKVLPPVEIEVKEGIYDTDARLETSRVNHFCPV 242 Query: 218 K---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + + +++ A ++A CR +R DF++D KV + + PG+ Sbjct: 243 RDESLAALGSNVDNARVALEQAACEVYRAYDCRDFARVDFIWD--GHKVMVMGLKTFPGL 300 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T S+ P AG E+L +V A Sbjct: 301 TETSLVPMAIEAAGLKRDEVLAHLVVGA 328 >gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1] gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1] Length = 279 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ +LHG GEDG VQ +LELL +PY +G+LASA MDK+ K + + G+P Sbjct: 12 FDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNY 71 Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 + + T ++ + + P +KP GSS+GI + + + L ++ ++ Sbjct: 72 VWYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFD 131 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 + IEL + V +PK DFY Y+ KY ++ ++PA+IP Sbjct: 132 RKIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEIPA 191 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 D+Y++++R+A + +A+ C G+ R+DF ++ E+N PG TP S+FP + ++ Sbjct: 192 DVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWKHS 250 Query: 282 GYSFRELLLWMVEDA 296 G + EL+ +V+ A Sbjct: 251 GVEYPELIERLVKLA 265 >gi|111222491|ref|YP_713285.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a] gi|111150023|emb|CAJ61718.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a] Length = 321 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 +L GG+S EREVSL SG AL G + DVD + LA PD+ F VLHG Sbjct: 9 ILAGGLSPEREVSLRSGGRLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +L+L ++PY + A ++ DK +K V + GV ++ + R Sbjct: 69 GEDGTIREVLDLYDLPYVGAAPPACRVAFDKATAKAAVGAAGVATPAAVTLPREAFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGS+ G+ + + L S + + D LIE+ V Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVSRVDDAGGLAEAL--MSCFGYHDSALIERAV 186 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+T GV+ P + Y Y +Y++ + PA++ + + Sbjct: 187 SGVEITVGVVEVGDGPVALPAVEIEPAAGVYDYAARYTAGATAFFTPARLDDAVLRAAAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+ +G R +SR+D + D +LE+NV PGMT S +P AG + Sbjct: 247 TAVTAHRVLGLRDLSRTDMIVDAA-GVAQFLEVNVAPGMTDTSTWPMGLHAAGLDLAVVC 305 Query: 290 LWMVEDA 296 + A Sbjct: 306 RDLAARA 312 >gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium] Length = 330 Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 47/320 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+GI + + + L + ++ + IE+ D + V Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 FY YE KY + +PA++P ++Y++ Q A LA+ +G G+SR DF Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301 Query: 255 RKVFWLEINVQPGMTPVSIF 274 ++F E+N PG T S++ Sbjct: 302 NELFLNELNSMPGFTEFSMY 321 >gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism] Length = 337 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 29/302 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG SSE +VS+ S + S ++ + + +++ + L Sbjct: 5 IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64 Query: 47 ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 +KPD A+ +HG GE+G++Q ELL IPY+ +L SA++ K Q + Sbjct: 65 SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124 Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GV V S+ D I P IKP GSS G+ +K + I L Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214 ++ D ++IE ++DGIEL G V + + T + Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEVVSKNEFFDYNAKYNGEVTEI 242 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 PA++ ++ VQ+L + +GC+GI R D++ K+ LEIN PGMT S Sbjct: 243 TPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301 Query: 275 PE 276 P+ Sbjct: 302 PQ 303 >gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 137/285 (48%), Gaps = 16/285 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG+S EREVSL SG+ A +L AG V + DVD S+ L +PD LHG Sbjct: 6 VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GE+G +QA+LELL +P+ S A DK +K + G+ + + T Sbjct: 66 GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125 Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P ++KP +GGS+LG V+ + +P + S + D +L E+ Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPS--VMVSCLAYSDTVLAER 183 Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 ++DG E+ V+ P Y Y +Y+ ++ PA++ D+ V Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVEPLGGVYDYTARYTPGSTDFHCPARLAPDVLARV 243 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 Q A AH+ +G R +SR D + D V LE+NV PG+T S Sbjct: 244 QDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287 >gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 404 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 136/365 (37%), Gaps = 73/365 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50 +AV+ GG+S E EVS+ S ++++ +++ + + + + K Sbjct: 12 VAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYKNLK 71 Query: 51 ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74 D+AF ++HG F EDG++Q LEL Sbjct: 72 GLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGYLEL 131 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 L +PY +++S+ MDK+ K V G+P+ + + + + Sbjct: 132 LGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEGKLQ 191 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL-------------LQSSSWNHGDQLLIEQYV 172 P ++KP GSS+GI + + + + ++ Y Sbjct: 192 YPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVLGDYE 251 Query: 173 DGIELTCGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 C + ++ ++ ++PA I + KE+Q LA Sbjct: 252 AAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQELA 311 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A Q +GC G+SR DFL D + VF EIN PG S+ + G ++EL Sbjct: 312 VAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKELTND 367 Query: 292 MVEDA 296 +++ A Sbjct: 368 LIQLA 372 >gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 350 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 164/342 (47%), Gaps = 52/342 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AVL GG S E E+SL S + +A++ + + I V+++ + + Sbjct: 5 VAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKYNIN 64 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 LK D+ F++LHG+ GE+G Q + + P Sbjct: 65 YIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNTIYTP 124 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-----PPYVIKPL 133 + S +L+S++ MDK SK+++S+ G+ V PSI + + P IKP Sbjct: 125 FVGSNVLSSSICMDKDISKRILSTFGISVVPSITLYYENYKKKINKIINNIKFPCCIKPS 184 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192 GSS G+ V S+ + + + ++LIE ++ G E+ GV+G+ ++ + Sbjct: 185 NQGSSFGVNVANDFISLKESIDVAF--LYSKKILIEPFIQGREIEVGVLGNRNVISSVCG 242 Query: 193 -AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 K FY Y+ KY S + ++PAKI +I +++++A LA ++ C ++R DF Sbjct: 243 EIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVDFFLT 302 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++K+F EIN PG T SI+P++ + +G F+ L+ ++ Sbjct: 303 -KNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM 12042] Length = 411 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 135/378 (35%), Gaps = 84/378 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------SVG 43 + V+ GG S E EVS+ S AL+ ++V + + + ++ Sbjct: 5 VGVVFGGESVEHEVSVISALQGIEALDKERYEVIPLYISKQRDFYSSPALLEVENYKNLD 64 Query: 44 LVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILELLE 76 ++ P D+ ++HG GEDG +Q LE+L+ Sbjct: 65 ELIQKATPVVLVKKGKEVVVEPIKKGLFTKPIGTVDVIVPIMHGTNGEDGTIQGYLEMLK 124 Query: 77 IPYTHSGILASALSMDKMRSKQV--------VSSCGVPVCPSILVNRFTMDSQHLISPPY 128 IPY ++ +A+ DK+ K + + + H + P Sbjct: 125 IPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWFWLYGHEFAQKQEAVLAQVHELGYPV 184 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 V+KP GSS+GI + D+ + + ++ ++ + + E+ C V+G Sbjct: 185 VMKPACLGSSVGITIAHNDEEFIAGVEDARQYD-NKIVVEQMVKNLREINCSVLGSCFDC 243 Query: 189 V-------TEIAVPKSDFYSYELKYSSLNSTHVL-------------------PAKIPLD 222 + S Y + S+ + PA + Sbjct: 244 QASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGGVKCGTKSGDGGMASAARIVPAPVDEA 303 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 ++++ LA + +G G+ R DF+ D + ++ EIN PG S+ + G Sbjct: 304 TTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGMIYVNEINTIPG----SLAYYLWQPVG 359 Query: 283 YSFRELLLWMVEDASCLR 300 SF +L+ +V A R Sbjct: 360 VSFTQLMDTLVSQA-IDR 376 >gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB] Length = 352 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 161/339 (47%), Gaps = 47/339 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + +++GG+SSEREVSL+SG+ L+ ++ + +D R + Sbjct: 7 VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66 Query: 43 GLVLA-----------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 L + D AF LHG +G+DG +Q +LELL IPYT G++ASAL M Sbjct: 67 TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGII 142 DK ++++ + GV V S+LV I P KP++ GSS+G+ Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199 V++ + + + + W +L+E+Y++G E +C V+ + P+S+F Sbjct: 187 VVRDEADLERGMEDALKW--DRAVLVEEYLEGREFSCIVLEEEGQFHPLELTEIHPQSEF 244 Query: 200 YSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257 ++Y+ KY P IP D+ ++++ A +A+G R R D F+ + ++ Sbjct: 245 FTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGRI 302 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + N GM P S F E AA AG ++ ++E+A Sbjct: 303 LITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753] Length = 342 Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 58/335 (17%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------------------- 48 S A++ + ++V+ + + + L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60 Query: 49 --------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 K D LHG GEDG +Q +L+L IP+ + +SA MDK+ Sbjct: 61 GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGSSLGIIVI 144 + ++ G+P + + S L S P +KP GSS+G+ Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYS 201 + + + + +++ ++LIE+ + G E+ C V+G+ P ++FY Sbjct: 181 ENREELRAAIAKAA--KEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYD 238 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 YE KY S S +PA + + + ++ A A+Q +GC G++R DF +V E Sbjct: 239 YEAKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFV-RNGSEVLLNE 297 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG T +S++P++ + G S +EL+ +++ A Sbjct: 298 LNTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332 >gi|288920000|ref|ZP_06414320.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f] gi|288348564|gb|EFC82821.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f] Length = 319 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 17/311 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSLSSG AL G DVD + LA P + VLHG Sbjct: 9 VLAGGLSVEREVSLSSGSRLHEALSRIGVDTELRDVDDATLTALAGDPPAVVIPVLHGTS 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG ++ +L+L +PY + A + DK +K V++ G+ ++ + R Sbjct: 69 GEDGTIREVLDLYGLPYVGAEPAACRSAFDKAAAKATVTASGISTPRAVTLPREAFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P V+KP GGSS G+ +++ + L + + + D LIEQ V Sbjct: 129 AAQLIDRVVGRLGLPLVVKPRAGGSSFGVGRVEEAGQLAEAL--MACFGYHDWALIEQAV 186 Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ GV+ S P + Y Y +Y+ +T + PA++P + Sbjct: 187 TGVEIAVGVVDTGSGPIALPAVEIEPVTGPYDYAARYTPGATTFITPARLPAAVLDAAAA 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AHQA+G R +SR+D + D +LE+NV PGMT S +P AG F + Sbjct: 247 AAVAAHQALGLRDLSRTDLIVDAA-GVPQFLEVNVAPGMTDTSTWPMCLEAAGLEFGVVC 305 Query: 290 LWMVEDASCLR 300 + A+ R Sbjct: 306 RDL-AAAAQNR 315 >gi|325971616|ref|YP_004247807.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] gi|324026854|gb|ADY13613.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] Length = 360 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 134/343 (39%), Gaps = 49/343 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S+E EVS++S AL+ AG++V I + L Sbjct: 3 IALVYGGRSTEHEVSIASALTVHRALKQAGYRVLLIAIALDGRWYLQPNLLSKSIDATIP 62 Query: 47 -------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 A L D F HG GEDG +Q + L +P ++SAL M K Sbjct: 63 IHAVPGLGLYVQDAKLDIDAVFATTHGYGGEDGNLQGLCMLCRLPLCGCDTVSSALGMHK 122 Query: 94 MRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 + ++ +P P+ + ++ + P +KP GSS+G+ Sbjct: 123 HLASELFMQALIPTVPTLLLDKNAVQQVEYTTLLERARSTLGPDLFVKPENSGSSVGVSA 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCGVMGDASLDVTEIAV 194 +K + L + + +++LI+ + G++ V + A Sbjct: 183 LKDCDAKALQQAVELARRYSERVLIQLLIHPLQELETAVLETRDKGLVVAGPGLVIDPAK 242 Query: 195 PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 F SYE KY + +P+ + ++ A A AI G +R DF Sbjct: 243 ETVGFLSYEHKYGKVDTAHIRIPSGLDDTTETIIKNYARKAFLAIKGDGYARIDFFVSE- 301 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +++ EIN PG+T S +P + A GY + +VE+A Sbjct: 302 -NRIYLNEINTSPGLTDTSHYPALLASVGYDLSSVCKHLVENA 343 >gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC 43243] Length = 398 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 71/362 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A++ GG S E EVS+ SG +++ + V + + ++ + + Sbjct: 10 VAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYKNID 69 Query: 47 -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+AF V+HG EDG Q L+ + Sbjct: 70 ELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYLKTM 129 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSILVNRFTMDSQHLISPP 127 IP+ + ASA+ MDK +K V+ VPV + D +++ P Sbjct: 130 GIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVFGYP 189 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 ++KP+ GSS+GI V K + + + + L+ + E+ C V+GD + Sbjct: 190 VIVKPVNLGSSVGISVAKSRVELANSVDDAFRYAT-KVLVEHAITNLREINCSVLGDEND 248 Query: 188 DVTEIAVPKSDFYSYELKYSSLNST-------------HVLPAKIPLDIYKEVQRLAFLA 234 + S +PA++ + +EV+ LA + Sbjct: 249 AIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAVRS 308 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A+GC G+SR DF+ D + K+++ EIN PG S+ + G ++ELL M++ Sbjct: 309 FKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRMIQ 364 Query: 295 DA 296 A Sbjct: 365 LA 366 >gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila caviae GPIC] gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila caviae GPIC] Length = 811 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 121/332 (36%), Gaps = 40/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S E +VSL S + L + V ++R Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513 Query: 45 ------VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 +A D +LHG FGEDG +Q LE+ PY +L SA+SMDK+ + Sbjct: 514 YHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKIMT 573 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKD 147 K++ +S GVPV P + T + P +K GSS+G+ + + Sbjct: 574 KRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEVHNE 633 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + ++ ++ + + + S + + Sbjct: 634 TELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGDACSCYYISEPHERRGSKGFIGYEE 693 Query: 208 SLNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 A I D+ V+ L ++ I +G R DF D + E Sbjct: 694 KYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFLDREGN-FWLSE 752 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +N PGMT S F A G++F +++ ++ Sbjct: 753 MNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784 >gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21] Length = 334 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 128/322 (39%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341] Length = 335 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S L+ F+V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSATLN 67 Query: 48 HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + ++ I + + Sbjct: 128 DIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLNS 211 +Q+L+E+ V EL P+ FYSYE KYS S + Sbjct: 188 F--GFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + + + + +Q+ A + R +SR DF ++ E+N PGMTP+ Sbjct: 246 TVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F L V Sbjct: 305 SMFPKMLEHNGHRFSAFLAECV 326 >gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93] Length = 334 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|268610478|ref|ZP_06144205.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Ruminococcus flavefaciens FD-1] Length = 401 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 76/368 (20%), Positives = 133/368 (36%), Gaps = 77/368 (20%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------- 41 AVL GG S E EVS+ S +++ + + + + + Sbjct: 6 AVLFGGRSVEHEVSVISAVQAMASINKEKYNIIPVYMTKKSEFYTSEKMLDINSFKDIPA 65 Query: 42 -------------------VGLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLE 76 V + D+AF ++HG EDG +Q L+ L+ Sbjct: 66 LLAESTECVFVRSEGKVQLVRQKIKKFGSNLISDVDIAFPIVHGTNVEDGALQGYLQTLD 125 Query: 77 IPYTHSGILASALSMDKMRS--------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 +PY +LASA+ MDK V+ C ++ + P Sbjct: 126 LPYVGCDVLASAVGMDKYVMKILLKEAGFPVLDCCRFSSYEIDDMDNMIAQVEAKFGYPV 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-------------NHGDQLLIEQYVDGI 175 ++KP+ GSS+GI K S+ + ++ + + ++ + Sbjct: 186 IVKPINLGSSVGISKAKDRDSLINSIEEAFQFADRILVEPAVVQLKEINCSVVGDSEEAE 245 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQ 228 C AS D K + S + + PA+I + + ++ Sbjct: 246 ASVCEEPVQASSDEILSYDQKYKGDGGKNGSKSGGGSKGMATLKRKIPAEITPEQDEFIR 305 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 R A A + +GC G++R DF+ D + KV+ EIN PG S+ + G + EL Sbjct: 306 RTAVDAFRYLGCNGVTRIDFMIDMATDKVYINEINTIPG----SLAFYLWEPKGVKYPEL 361 Query: 289 LLWMVEDA 296 L +++ A Sbjct: 362 LERLIQLA 369 >gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2] gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385] Length = 334 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + + I + + Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae TW-183] gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae TW-183] Length = 809 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 39/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E ++SL S + + + + VS ++R Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSPSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N + P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + + + +S + + Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693 Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + AKI D+ V+ LA ++A+ +G +R DF D + E+ Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PGMT S F + +AG++ +++ + DA Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786 >gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187] gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187] Length = 330 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 33/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA------GFKVSQ------------IDVDRSVGL 44 +L GG SE E+SL S S L++ ++ + +DR + Sbjct: 8 LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q++LEL+ +PY G S L +K+ +K +S+ Sbjct: 68 ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127 Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + +K GSS+G + + + + Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVGCYKVTDAAKLSEAVNAAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLNSTHV 214 + DQ+L+E+ V EL V EIA P FYSYE KYSS +++ Sbjct: 188 --GYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245 Query: 215 LPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++ A A +G + +SR DF ++ EIN PGMTP+S Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVED 295 +FP++ + G +F++ L ++ Sbjct: 305 MFPKLLEHHGDNFKQFLEGIIRS 327 >gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252] Length = 414 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 137/375 (36%), Gaps = 83/375 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47 + V+ GG+S E EVS+ +G A+AL+ +++ + + + L Sbjct: 10 VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69 Query: 48 HLK-----------------------------------PDLAFNVLHGNFGEDGLVQAIL 72 L+ D+ LHG GE+G VQ + Sbjct: 70 ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------- 125 E L +PYT SG+L SAL MDK+ SK + G+PV + + Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189 Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGI 175 P V+KP + GSS+GI ++ Q++ + ++ ++ + I V G Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQALDAAIEEAFRYDEKVVVERAIRNLREINCAVLGD 249 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYE--------------LKYSSLNSTHVLPAKIPL 221 ++ + + Y + ++PA + Sbjct: 250 PSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLDRIIPAPLDE 309 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + VQ +A Q C G++R DFL D + +V++ EIN PG S + Sbjct: 310 AQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG----SFSFYLWEPV 365 Query: 282 GYSFRELLLWMVEDA 296 G F L+ ++ A Sbjct: 366 GVPFDALMDELIRLA 380 >gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes: UDP-N-acetylmuramate--L-alanine ligase and D-alanine--D-alanine ligase [Chlamydophila abortus S26/3] Length = 810 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 115/331 (34%), Gaps = 39/331 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + V+ GG S E ++S+ S K L + + +DR Sbjct: 454 VGVVCGGKSCEHDISVLSAKNVVRYLSPEYYDIQYFIIDRQGLWSKVSTIECEDYEGKGY 513 Query: 45 -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 A + D +LHG FGEDG +Q LE++ PY +L S+++MDK+ +K Sbjct: 514 HVLSSEITEALIHLDFILPILHGPFGEDGTLQGFLEIINQPYAGPSLLFSSVTMDKIMTK 573 Query: 98 Q---------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 + V + P +K GSS+G+ + ++ Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHNEE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + + + +S + + Sbjct: 634 ELKAKISEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYEDK 693 Query: 209 LNSTHVLPAKIPL------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 A+I ++ V+ L ++ I +G R DF D + E+ Sbjct: 694 YGLNGRTSAQIQYDLDLSEELKIRVKELTERMYRVIQGQGSCRVDFFLDDE-GNFWLSEM 752 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F G++F +++ ++ Sbjct: 753 NPIPGMTKASPFLHDFVRLGWTFEQVIHQLI 783 >gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80] Length = 334 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 129/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + + I + + Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 V--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + +Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226] Length = 334 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 130/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+LIEQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 55/332 (16%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------------------- 48 S + AL+ F+ I +D+ + Sbjct: 2 QSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 61 Query: 49 ---------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 + D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK Sbjct: 62 AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDK 121 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKD 147 +K+V+ + V P + +R T + P +KP GSS+G V + Sbjct: 122 DMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVG--VSQVR 179 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + + + ++L+E V G E+ C V+G+A + Y Sbjct: 180 TADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATK 239 Query: 208 SLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 ++ V+PA I + +Q++A A+QA+GC G++R D ++ E+N Sbjct: 240 YISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA-DGRIVINEVNT 298 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T +S++P++ +G +R L+ ++E A Sbjct: 299 LPGFTRISMYPKLWQASGLDYRGLITRLIELA 330 >gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)] gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426] Length = 334 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52] Length = 334 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|160879787|ref|YP_001558755.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium phytofermentans ISDg] gi|160428453|gb|ABX42016.1| D-alanine--D-alanine ligase domain protein [Clostridium phytofermentans ISDg] Length = 347 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 15/300 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S+ + A +ALE + ++ D + L D+ FN+ G G + Sbjct: 40 AEYD-SIDTVLAIKNALECDNCHIELMEADTDLPKRLKETPVDIVFNIAEGLKGRGREAE 98 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+L + IP+T S L++DK K+V+S+ + + + S P Sbjct: 99 VPAVLNMFNIPFTGSDETTLCLALDKALCKRVLSTYRIRTPKYRVFTKDDNRLNTNFSFP 158 Query: 128 YVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 ++KP GSS GI I I ++ L+ + +G +L+E+Y+DG E T GV+G+ Sbjct: 159 CIVKPNAEGSSKGISDICIATNKEELKTLVTDNIKAYGQDMLVEEYIDGREFTVGVLGNG 218 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLN--------STHVLPAKIPLDIYKEVQRLAFLAHQA 237 + + S N + P+K+ DI +E+ +A + Sbjct: 219 DDVHVFSPMEIIYLKKNKFNIYSFNVKQDYKKLIRYECPSKLDPDIEEEMVFMAKKIFKV 278 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 + C SR DF + K +++EIN PG+ P S FP +A + G + L+ ++ +A Sbjct: 279 LSCHDFSRIDFRLNSE-GKPYFIEINPLPGLAPGYSDFPMLAEFCGMDYVTLVRSILRNA 337 >gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223] Length = 334 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67 Query: 45 -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + ++ I Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--AIE 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 +++ +Q+L+E+ V EL P+ FYSYE KY +S + Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + + + + +Q+ A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51] Length = 334 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395] gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395] gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27] Length = 329 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|297170214|gb|ADI21252.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured myxobacterium HF0010_08B07] Length = 297 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 121/300 (40%), Gaps = 11/300 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + +L GG S E +S S + ++ A F D+ + L F +HG Sbjct: 4 VIILYGGDSVESGISQQSAEGIMENIDQAKFSARMQDIKNFDFKSVDKET--LIFIAVHG 61 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG Q +L+ +I +T S +++ +K+ SK ++ +P ++ + + Sbjct: 62 KDGEDGTTQKLLKKRKIKFTGSDEISTRKCWNKISSKTLMVENAIPTPEFKVIKKNQKLN 121 Query: 121 QHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + +KP GSS G+ + +++ ++ + ++ + Sbjct: 122 LEDQFFSKNKSFFVKPNSNGSSFGVSRVDHIKNLEGAIITARKYSEDVIIERAYNSAEYT 181 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + Y+ + ++ + I E++++A A Sbjct: 182 VGILKGEALQPLEIIAEDSEGF---YDYEAKYISKGTKKVEVVDKKIKDELKKIALKAFY 238 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GC+ R DF++D LEIN PG T S+FP A +G +++EL+ ++ED+ Sbjct: 239 KHGCQTWGRVDFVYDGKDLG--VLEINTVPGFTEKSLFPLAAKLSGINYQELITNIIEDS 296 >gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56] Length = 811 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 40/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------DVDRSV 42 + V+ GG S E +VSL S K L + V D D+ Sbjct: 454 VGVVCGGQSCEHKVSLLSAKNIIQYLASEYYDVQYFVINRQGLWSKVTAIDAEHDYDKEG 513 Query: 43 GLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 VL+ D+ +LHG FGEDG +Q LE+++ PY +L SA+SMDK+ + Sbjct: 514 YHVLSSEIAESLANVDVILPILHGPFGEDGTLQGFLEIIDKPYGGPSLLFSAISMDKVMT 573 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKD 147 K++ +S GVPV P + + P +K GSS+G+ + + Sbjct: 574 KRLAASIGVPVVPYQPLTLHAWKRTPDLCMRRILETFTFPMFVKAAHLGSSIGVFEVHNE 633 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + + ++ + + + + +S + + Sbjct: 634 EELKSKISEAFQCDTDIFIEESRLGSREIEVSCLGDASSSYYISEPHERCGEKRFISYEE 693 Query: 208 SLNSTHVLPAKIPLDIYK------EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 AKI D+ V+ L ++ I +G R DF D + + E Sbjct: 694 KYGFNGKSSAKIQYDLNFSKEAKARVKELTERIYRVIQGKGSCRIDFFLDNE-GEFWLSE 752 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 IN PGMT S F G++F +++ ++ Sbjct: 753 INPIPGMTESSPFLHDFVRVGWTFEQIMHQLI 784 >gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] Length = 318 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 153/313 (48%), Gaps = 18/313 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AV+ GG+S ER+VSL+SG+ L G +V+ D DR++ L K +A LHG Sbjct: 10 VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRALLHNLERDKAVVALPALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-------- 112 FGEDG +Q +LEL+ IPY + + ++ DK +++++ G+PV S+ Sbjct: 70 QFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRRGGIPVPDSVSLSSTTFRD 129 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + V+KP +GGS+LG+ + ++P L ++ + D+ LIE+ Sbjct: 130 VGAPVLMEHVISRMGERVVVKPSRGGSALGVTGVDGLSALPAAL--VKTYAYCDEALIER 187 Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 + GI+++ V L I K + + +Y++ P +P + E Sbjct: 188 FYAGIDVSVVVHETDEGTKPLTPIAIDFSKGHEFDFAARYTAEFVGFGRP-DLPDALLTE 246 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A AH+ +G R ISR+DF+ P LE+ + PG T S+FP A + G S Sbjct: 247 LGETAVRAHELLGMRDISRTDFMVTP-DGGFVVLEVAITPGATETSVFPFAAKHDGTSMG 305 Query: 287 ELLLWMVEDASCL 299 E+ L +++ A Sbjct: 306 EVTLALLKRALAR 318 >gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae CWL029] gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae CWL029] gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae AR39] gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae J138] Length = 809 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 39/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E ++SL S + + + + VS ++R Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY + +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N + P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + + + +S + + Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693 Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + AKI D+ V+ LA ++A+ +G +R DF D + E+ Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PGMT S F + +AG++ +++ + DA Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786 >gi|220921310|ref|YP_002496611.1| D-alanyl-alanine synthetase A [Methylobacterium nodulans ORS 2060] gi|219945916|gb|ACL56308.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060] Length = 378 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 75/346 (21%), Positives = 135/346 (39%), Gaps = 55/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVL------------- 46 +A+L GG S+E EVS+ S A AL+ + V+ I +D+ L Sbjct: 5 VALLFGGRSAEHEVSILSAGNVARALDPDRYAVTPIAIDKETGAWRLCPALAAGEAPAMG 64 Query: 47 ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 D+ VLHG GEDG VQ L+L +PY S Sbjct: 65 QDGPLVAFLPGGGGRLAILSDAAALSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGG 136 G++ SA +MDK +K+++ G+P+ + + + L S +KP G Sbjct: 125 GVVGSAAAMDKDVAKRLMRDAGLPMIVPFLAATARRPVSYADAAAALESRTLFVKPANMG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ + + + +++LIE+ V + + ++ P Sbjct: 185 SSVGVSRVTDPAQFDRAAAHAF--GYDEKILIERAVPQAREIECAVLETPEGELRVSPPG 242 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--------GISRSDF 248 + + ++ ++ P L I + + + R G++R D Sbjct: 243 EIAPAAAHGFYGYDAKYLDPDGAALLIPAALDAARADRMRELAARAFAALACAGLARVDL 302 Query: 249 LFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 DP +F E+N PG T +S++P++ AG + L+ ++ Sbjct: 303 FLDPADPAGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 348 >gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3] Length = 334 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + +K + GSS+G + + I + + Sbjct: 128 GIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 V--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + +Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str. N16961] gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236] gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2] gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33] gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286] gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236] gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10] gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101] gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757] Length = 334 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 131/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L+ V Sbjct: 305 SMFPKMLEHNGHRFSEFLVQCV 326 >gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 809 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 39/334 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E ++SL S + + + + VS ++R Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 K D F VLHG FGEDG +Q E+L PY + +A +MDK+ +K Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148 ++ S+ GVPV P +N + P ++K GSS+GI +++ + Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + + + +S + + Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693 Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + AKI D+ V+ LA ++A+ +G +R DF D + E+ Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PGMT S F + +AG++ +++ + DA Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQVVDHFIIDA 786 >gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B] Length = 367 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 57/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L G S E E+S+ + S ++ + + I + + + Sbjct: 4 VGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNLE 63 Query: 46 ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + D+ HG+ GEDG +Q +LE L +PYT Sbjct: 64 RLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYTG 123 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKG 135 G+ +S +MDK+ +K ++ +PV + N+ + ++ P ++KP + Sbjct: 124 CGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMIVKPARL 183 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193 GSS+G+ + + + + + D++++E+++D EL C VMG ++ E Sbjct: 184 GSSIGVKKVNDKCELEEAIETAF--SFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIEEI 241 Query: 194 VPKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + DF+ Y KY S H++PA I ++ ++ +A A+ C G R DFL Sbjct: 242 KKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDFLL 301 Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 K++ E+N PG +S + + +G++F +++ M+ A Sbjct: 302 S-KDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIA 342 >gi|116490730|ref|YP_810274.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1] gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429] gi|122277086|sp|Q04G13|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1] gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429] Length = 377 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 139/345 (40%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + + GG SSE +VS S K AL+ +++ + + + ++ Sbjct: 7 VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A Sbjct: 67 ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140 A+S DK+ +K++++ G+ I++ + + +K GSS+G Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---------TCGVMGDASLDVTE 191 + + + L S + ++LL+E+ V+ + Sbjct: 187 VSRVTNAEEYENALRDSF--QYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F + + +PAKI KE++ +A A++ +G +G +R DFL Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E N PG T +S+FP + AG + + +++ A Sbjct: 305 -KDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348 >gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587] gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39] Length = 334 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 85/322 (26%), Positives = 129/322 (40%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + + I + + Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451] Length = 334 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67 Query: 45 -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + ++ I Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--AIE 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 +++ +Q+L+E+ V EL P+ FYSYE KY +S + Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + + + + +Q+ A + R +SR DF ++ E+N PGMTP+ Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus oeni ATCC BAA-1163] gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus oeni ATCC BAA-1163] Length = 377 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 139/345 (40%), Gaps = 52/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + + GG SSE +VS S K AL+ +++ + + + ++ Sbjct: 7 VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + +LK D+ F +HGN GEDG + + L+ IPY SG+ A Sbjct: 67 ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140 A+S DK+ +K++++ G+ I++ + + +K GSS+G Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---------TCGVMGDASLDVTE 191 + + + L S + ++LL+E+ V+ + Sbjct: 187 VSRVANAEEYENALRDSF--QYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 F + + +PAKI KE++ +A A++ +G +G +R DFL Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++F E N PG T +S+FP + AG + + +++ A Sbjct: 305 -KDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348 >gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14] Length = 334 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 132/325 (40%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG SSE E+SL S L F V ++++ + + Sbjct: 8 LLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSASLN 67 Query: 48 ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 + D +HG GE G +Q++LEL IPY G AS+ S +K+ SK + Sbjct: 68 SEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + IK + GSS+G + Q I + + Sbjct: 128 GIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAIDDA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 DQ+L+EQ V EL P FYSYE KY +S + Sbjct: 188 F--TFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSHSM 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V I + ++R A + R ++R DF +++ E+N PGMTP+ Sbjct: 246 TKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQ-GEIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + G+SF L V+ + Sbjct: 305 SMFPKMLEHHGHSFSVFLADCVQRS 329 >gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 252 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 F LHG GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + Sbjct: 4 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 63 Query: 114 NR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 R + P ++KP + GSS+G+ + ++ ++ L + H D Sbjct: 64 TRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGALSLAF--QHDD 121 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++LIE+++ G E T ++G+ L P FY YE KY S + + PA + Sbjct: 122 EILIEKWLCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQE 180 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +Q L A +A+GC G R D + D + + LE N PGMT S+ P A AG S Sbjct: 181 AALQSLVLQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 239 Query: 285 FRELLLWMVEDA 296 F +L++ ++E A Sbjct: 240 FSQLVVRILELA 251 >gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0770_33G18] Length = 298 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 11/263 (4%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 + D+ F +LHG +GEDG VQ +LEL +PY +G+ ASA+ MDK ++ + S+ G+P Sbjct: 26 ESGRFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFSAAGLP 85 Query: 107 VCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +++ R + + P IKP+ GSS+GI + + + Sbjct: 86 QTRFVVIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRDELIQGVDSA 145 Query: 158 SSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + + + + IE D + VP ++FY Y KY +T ++P Sbjct: 146 GVYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDDCATLIIP 205 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A +P K++Q ++ +AI C G++R DFL ++ EIN PG TP+S++P+ Sbjct: 206 ADLPGATVKQIQEMSIRTFRAIDCSGLARVDFLI-GQDGEILLNEINTMPGFTPISMYPK 264 Query: 277 MAAYAGYSFRELLLWMVEDASCL 299 + A AG ++ +L+ +++ A Sbjct: 265 LWAAAGLNYPDLIDRLIQIALAR 287 >gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603] Length = 334 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67 Query: 45 -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + ++ I Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--AIE 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 +++ +Q+L+E+ V EL P+ FYSYE KY +S + Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + + + + +Q+ A + R +SR DF ++ E+N PGMTP+ Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 310 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 133/305 (43%), Gaps = 14/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +A+L GG S E + S S A AL + G + +D+ L + AF H Sbjct: 3 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWKRLPD--FEAAFIAGH 60 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 61 GWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGATA 120 Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +Q I P KP G S +++ D+ + L + ++ + + E ++ G Sbjct: 121 AQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSD-EFIAEPFLTG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 T GV+ + + K + PA IP + +Q LA Sbjct: 180 NTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQELA 239 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 GCRG++R DF+ + LE+N PG+T MA +G +R ++ Sbjct: 240 VRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEI 297 Query: 292 MVEDA 296 M++ A Sbjct: 298 MLQSA 302 >gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 312 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 133/305 (43%), Gaps = 14/305 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59 +A+L GG S E + S S A AL + G + +D+ L + AF H Sbjct: 5 VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWKRLPD--FEAAFIAGH 62 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + EDG +Q +LE++ +PYT SG+LAS++ M K K ++ + G+ P V+R Sbjct: 63 GWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGATA 122 Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +Q I P KP G S +++ D+ + L + ++ + + E ++ G Sbjct: 123 AQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSD-EFIAEPFLTG 181 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 T GV+ + + K + PA IP + +Q LA Sbjct: 182 NTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQELA 241 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 GCRG++R DF+ + LE+N PG+T MA +G +R ++ Sbjct: 242 VRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEI 299 Query: 292 MVEDA 296 M++ A Sbjct: 300 MLQSA 304 >gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11] Length = 330 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48 +L GG +E EVSL S K A L + F ++ +++ + Sbjct: 6 LLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKTLL 65 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++L++L IPY +S S +K+ SK + Sbjct: 66 SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + ++ +K GSS+G + ++ + + Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAING 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST 212 + + Q+L+E+ V EL T P FY+Y+ KY S + + Sbjct: 186 AF--GYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243 Query: 213 HV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + K + + + + + +SR DF +++ E+N PGMTP Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGMTP 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G F+ L V +A Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 15/299 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE--DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58 +A++ GG SSEREVSL + +A + +LE ++ I D L L K F L Sbjct: 5 IAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTI-SDYRELLRLDLAKFTRVFLAL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG FGE+G+ QA LE IPY SA+ M+K+ +K + G+ V + R Sbjct: 64 HGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSRRGDD 123 Query: 119 DSQHLISP----PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 I+ P ++KP + G S +V + + + ++ ++ G +L+E+++ Sbjct: 124 LCVEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG--VLVEEFIS 181 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G EL+ + + +S+F+SYE K+ S +T L + ++++ F Sbjct: 182 GPELSV-CYFNKATLPIYSLAFESEFFSYEAKFISSKTTATL-TTLDRTTHQQLNNYCFA 239 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+ R+DF+ + + + +E+N PG+T S+FP+ G F +L+L + Sbjct: 240 IAEALEL-DYFRADFII--HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLLL 295 >gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238] gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238] Length = 343 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48 +L GG +E EVSL S A L + F+++ +++ + Sbjct: 19 LLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKTLL 78 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++L++ IPY AS S +K+ SK + Sbjct: 79 CNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWYDA 138 Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +P P + +K GSS+G + + + + Sbjct: 139 LSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVEAVNN 198 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSS--LN 210 + + +Q+L+E+ V EL T + P FY+YE KY S + Sbjct: 199 AF--TYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGSHS 256 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 +T + + + + + + + + + +SR DF +++ E+N PGMTP Sbjct: 257 TTTLDAKNLTEEQIELINKYSRKVFTQMKLKDLSRIDFFLTDE-NEIYLNEVNTFPGMTP 315 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G+ F+ L + +A Sbjct: 316 ISMFPKLLEHNGHCFKTFLQKAILNA 341 >gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314] Length = 335 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 57/333 (17%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------- 51 S A + L+ ++V + + V+ P Sbjct: 1 MSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRTMPEVQRREEIRPSLDP 60 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F VLHG FGEDG +Q + L +IP G+L+SA MDK Sbjct: 61 AHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKE 120 Query: 95 RSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +K+++++ G+P+ +++ T + L+ P +KP +GGSS+GI + + + +P Sbjct: 121 FTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLP 180 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYE 203 + + H +++++E + G E+ CGV+ + FY ++ Sbjct: 181 AAVDLAR--QHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDGEGGFYDFD 238 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PA + +I + VQ LA QA+ C G++R DF EIN Sbjct: 239 TKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVDFFVTA--NGPVLNEIN 296 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG TP+S++P+M A +G + ELL +V+ A Sbjct: 297 TMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 329 >gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 334 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 34/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL--------------- 46 +L GG ++E E+SL S S LE + F V+++++ + Sbjct: 8 LLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGTLQ 67 Query: 47 ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +QA LEL +PY G AS S +K+ SK + Sbjct: 68 INGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P I ++ +K + GSS+G ++++ + L + Sbjct: 128 GIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAELLNALEGA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 ++ DQ+LIEQ V EL + P+ FYSYE KY +S Sbjct: 188 F--SYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSETQ 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T V + D +++ A + + R +SR DF P +V+ E+N PGMTP+ Sbjct: 246 TVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S+FP+M + ++F E + V+ + Sbjct: 305 SMFPKMLQHNEHNFAEFMADCVQSS 329 >gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573] Length = 334 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44 +L GG SSE E+SL S LE F V ++++ + Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67 Query: 45 -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + ++ I Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--AIE 185 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211 +++ +Q+L+E+ V EL P+ FYSYE KY +S + Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 T + + + + +Q+ A + R +SR DF ++ E+N PGMTP+ Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S+FP+M + G+ F E L V Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326 >gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565] Length = 329 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 133/325 (40%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L +G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + IK GSS+G + + + + Sbjct: 128 IPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGIADAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + +Q+LIE+ V EL V EI VP+ FY+YE KYSS + T Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245 Query: 215 --LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP++ + G+ F + L ++ AS Sbjct: 305 MFPKLLEHHGHRFSDYLEQILRKAS 329 >gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus] Length = 314 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 126/317 (39%), Gaps = 45/317 (14%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------------------------- 50 A+ + ++ I + +S + Sbjct: 1 AIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKKN 60 Query: 51 -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + Sbjct: 61 HEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNA 120 Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 G+ ++N+ + P +KP + GSS G+ + + + + + Sbjct: 121 GIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ--YD 178 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLP 216 ++LIEQ V G E+ C V+G+++ V Y + + +P Sbjct: 179 SKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP 238 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 A + + +Q A ++A+GCRG++R D + ++ E+N PG T S +P Sbjct: 239 ADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPR 297 Query: 277 MAAYAGYSFRELLLWMV 293 M A AG + EL+ ++ Sbjct: 298 MMAAAGIALPELIDRLI 314 >gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114] gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114] Length = 330 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 35/326 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48 +L GG +E EVSL S K + L + F+++ +++ + Sbjct: 6 LLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKTLL 65 Query: 49 ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D +HG GE G +Q++L++L IPY +S S +K+ SK + Sbjct: 66 SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125 Query: 103 CGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 G+P P + + ++ +K GSS+G + + + + Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAIND 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST 212 + + Q+L+E+ V EL T P FY+Y+ KY S + + Sbjct: 186 AF--GYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243 Query: 213 HV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + K + + + + + +SR DF +++ E+N PGMTP Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGMTP 302 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP++ + G F+ L V +A Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328 >gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum DSM 5476] Length = 321 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 14/258 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L+ D F VLHG GEDG +Q +L+L IP+ L+SAL MDK + V+ + G+ Sbjct: 66 LRIDCVFPVLHGRNGEDGTIQGLLKLAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTA 125 Query: 109 PSILVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + + +S P +KP GSS+GI +S+ + + Sbjct: 126 NWDQIQKTELPQLNEKCEQFIDKLSLPIFVKPANAGSSVGITKATDFESLREGIKFAF-- 183 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAK 218 H ++++E+ + G E+ C V+G+ + + +P ++FY Y+ K +S +PA Sbjct: 184 THDSKVIVEEMLSGKEVECAVLGNDAPQASALGQIIPCNEFYDYDAK-YQSDSELKIPAD 242 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + VQ A A+QA+GC G++R DF V+ E N PG T +S++P++ Sbjct: 243 LDEVTTRRVQETAVRAYQALGCSGLARVDFFVSE-DGTVYLNEPNTLPGFTSISMYPKLW 301 Query: 279 AYAGYSFRELLLWMVEDA 296 Y+G + ELL +V A Sbjct: 302 EYSGLPYSELLERLVTLA 319 >gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 329 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 132/324 (40%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + + IK GSS+G + + + + Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGIADAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + +Q+LIE+ V EL V EI VP+ FY+YE KYSS + T Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245 Query: 215 --LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 +FP++ + G+ F + L ++ A Sbjct: 305 MFPKLLEHHGHRFADYLEQILRKA 328 >gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885] Length = 473 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 138/259 (53%), Gaps = 13/259 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D+ F VLHG FGEDG VQ +LEL IPY +G+L SA+ MDK K++ + G+PV Sbjct: 164 EPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPVV 223 Query: 109 PSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P ++V + + P KP GSS+ I + + + L ++ Sbjct: 224 PFLVVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAF- 282 Query: 160 WNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++++E+ VD E ++ + + P+++FY+YE KY+ + ++PA Sbjct: 283 -AYDRKVVVERGVDARELEISVLGNDEPVASLPGEIRPRAEFYTYEAKYTEGGAELIVPA 341 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + E+QRLA A QAI G++R DF + + ++ EIN PG T +S++P++ Sbjct: 342 SLPPRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMYPKL 401 Query: 278 AAYAGYSFRELLLWMVEDA 296 AG S+R+L+ ++E A Sbjct: 402 WEAAGLSYRDLITRLIELA 420 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL 46 + +L GG S E EVSL S ++ A++ F+ I + R+ +L Sbjct: 49 VGILFGGRSGEHEVSLMSARSVYRAIDRERFEPVPIGITRAGQWIL 94 >gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum MopnTet14] Length = 802 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S E ++S+ S K A L ++V + R Sbjct: 450 GILCGGRSCEHDISILSAKNIARHLSSTFYEVQGFIITREGLWKKVSLLEGTEDSEKSIF 509 Query: 46 -----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K+ + Sbjct: 510 DSEIAMQLERLDVIVPILHGPYGEDGAIQGFLETIGKPYTGPSVVFAAIGMNKVLTKRFM 569 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + + P +K GSS+G+ + + Sbjct: 570 SDLGIPVVPYLPLTLTGWKQEPEKWLAQIMKAFSFPMFVKAAHLGSSIGVFEVHDALELR 629 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + ++ ++ + E + E+ +GD + + + + Y Sbjct: 630 EAIHEAFVQDND-VFIEESRLGCKEIEVSFLGDGAGVFFVAGMHERRGSGGFIDYCEKYG 688 Query: 212 THVLPAKI-------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 P+ ++ +++ A ++ + +G R DFL D + EIN Sbjct: 689 LSGKPSAQIVFDVDLSQEMQEQLLGAAEKIYRLLQGKGSCRIDFLVDDE-GSFWLSEINP 747 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG T S F G+S +++ +V Sbjct: 748 IPGTTESSPFLTAFVRKGWSCEQIIHQLV 776 >gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 400 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 19/271 (7%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------ 100 L+ D+ F VLHG FGEDG +Q +LEL I Y SG+L SA MDK K++ Sbjct: 122 QALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLP 181 Query: 101 ---SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + + T + + P +KP GSS+GI + + + + + Sbjct: 182 ITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELA 241 Query: 158 SSWNHGDQLLIEQYVDGI-------ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++++EQ V G E+ V VP +FY YE KY S Sbjct: 242 A--GFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEG 299 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMT 269 S ++PAK+ K+++ +A A +A C G++R DFL +P S +++ EIN PG T Sbjct: 300 SVPIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +S++P++ +G + +L+ ++E A R Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERR 390 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 + +L GG S E EVSL S + A++ ++V I + + V A Sbjct: 6 IGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTAD 53 >gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016] gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016] Length = 331 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 36/327 (11%) Query: 3 VLMGGISSEREVSLSSGK------------ACAS-ALEDAGF-----KVSQIDVDRSVGL 44 +L GG SSE E+SL S + +++ G+ ++ +D+ Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66 Query: 45 ---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 67 SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126 Query: 102 SCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + G+P P + + +K + GSS+G + + + + Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SL 209 ++ ++H Q+L+E+ V EL P FYSY+ KYS S Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + T V + +Q + + + R +SR DF +++ E+N PGMT Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGMT 303 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 +S+FP+M + G+ F E L +E + Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 331 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 38/328 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG SSE E+SL S + L V ++++ ++ G + Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEI-KNEGWFDQKERLVYLDIHTKSV 65 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 66 KSDEFNESIHIDFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWY 125 Query: 101 SSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + + +K + GSS+G + + + + Sbjct: 126 DAIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAI 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--S 208 ++ ++H Q+L+E+ V EL P FYSY+ KYS S Sbjct: 186 DKAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGS 243 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + T V + +Q+ + + + R +SR DF +++ E+N PGM Sbjct: 244 HSITEVEAKNLTEQQLATIQQCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S+FP+M + G+ F E L +E + Sbjct: 303 TKISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|315937026|gb|ADU56035.1| hypothetical protein CA37-12 [uncultured organism CA37] Length = 368 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 16/297 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ AL V D+ + L P + VLHGN Sbjct: 9 VLAGGLSLEREVSLRSGRRVFDALRGLDVDVEFGDLGPDLMRALIADPPSVVLPVLHGNP 68 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG V+ +LEL+ +PY + A L+ DK +K +V+ G+ S+ + R Sbjct: 69 GEDGTVREVLELVGVPYVGASAEACRLAFDKPLAKALVARAGLGTPASVTLPREAFHDLG 128 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP GGS+ G+ ++ +P L + + + D LIE+ V Sbjct: 129 AAPLISLILKRLGLPLFVKPRAGGSAFGVGHVQDADQLPAAL--MACFAYHDTALIERAV 186 Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ GV+ VP+ Y Y Y++ + PA++ V + Sbjct: 187 TGVEVAVGVVDLGEGPVAMPAVEIVPRRGIYDYSAHYTAGATEFFCPARLSDRAAAAVAQ 246 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A AH+A+G R +SR+D + D ++F LE V PG+T S F A GY+F Sbjct: 247 AALTAHRALGLRDLSRTDLIVD-KDDQLFVLETAVAPGLTDTSTFAMGLAAKGYAFA 302 >gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase [Chlamydia muridarum Nigg] Length = 833 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHL------ 49 ++ GG S E ++S+ S + A L + ++V + R L+ Sbjct: 481 GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF 540 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 K D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K+ + Sbjct: 541 DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM 600 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + P +K + GSS+G+ + + Sbjct: 601 SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR 660 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLDVTEIAVPKSDFYSYEL 204 + ++ + D + E + E+ A + D+ Sbjct: 661 DAINEAFVRD-DDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYG 719 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 ++ V + + +++ +A ++ + +G R DF D + EIN Sbjct: 720 LSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNE-GSFWLSEINP 778 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G++ +++ +V Sbjct: 779 IPGMTTASPFLAAFVRKGWNREQIVHQLV 807 >gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Nigg] gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia muridarum Weiss] gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; Includes: RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 802 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHL------ 49 ++ GG S E ++S+ S + A L + ++V + R L+ Sbjct: 450 GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF 509 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 K D+ +LHG +GEDG +Q LE + PYT ++ +A+ M+K+ +K+ + Sbjct: 510 DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM 569 Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151 S G+PV P + + P +K + GSS+G+ + + Sbjct: 570 SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR 629 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLDVTEIAVPKSDFYSYEL 204 + ++ + D + E + E+ A + D+ Sbjct: 630 DAINEAFVRD-DDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYG 688 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 ++ V + + +++ +A ++ + +G R DF D + EIN Sbjct: 689 LSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNE-GSFWLSEINP 747 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PGMT S F G++ +++ +V Sbjct: 748 IPGMTTASPFLAAFVRKGWNREQIVHQLV 776 >gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1] Length = 318 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 82/311 (26%), Positives = 125/311 (40%), Gaps = 34/311 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 +P P + + + T +K + GSS+G + + I + + Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 +Q+L+EQ V EL P+ FYSYE KYS+ + Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245 Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + L + Q A + R +SR DF +++ E+N PGMTP+ Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304 Query: 272 SIFPEMAAYAG 282 S+FP+M + G Sbjct: 305 SMFPKMLEHNG 315 >gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915] Length = 329 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 140/307 (45%), Gaps = 16/307 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62 VL GG+S EREVSL SG+ AL V DV + L P + VL+G Sbjct: 14 VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120 GEDG V+ +LEL +PY + A L+ DK +K ++ G+ S+ ++ Sbjct: 74 GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133 Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + P +KP GGS+ G+ ++K +P L + + H D LIE+ V Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAAL--MACFAHHDTALIERAV 191 Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G+E+ + VP+ Y Y YS+ + PA++ ++ V Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEIVPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVAE 251 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A AH+A+ R +SR+D + D +VF LE V PG+T S F A GY+F ++ Sbjct: 252 AAVTAHRALRLRDLSRTDLIVD-KDDQVFVLETAVAPGLTDTSTFAMGIAAQGYAFGDVW 310 Query: 290 LWMVEDA 296 + + A Sbjct: 311 RRLAQIA 317 >gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein [Clostridium difficile 630] gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile] Length = 366 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 9/261 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 S + + K D F VLHG GEDG VQ + EL I G L+SAL MDK +S ++ Sbjct: 105 ESCENDIKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKL 164 Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 V S G+ V SIL+ + ++ P IKP++ GSS GI I K + + + + Sbjct: 165 VHSEGIKVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVD 224 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + H ++++IE+ +DG E+ C V D + + F+ Y KY+ +S Sbjct: 225 LAF--EHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKI 282 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 +PA+I LD K +Q A + ++ +GC G +R D P S ++ + E+N PG T S Sbjct: 283 HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSR 341 Query: 274 FPEMAAYAGYSFRELLLWMVE 294 +P M G SF E+L ++E Sbjct: 342 YPNMMKGIGLSFEEILDKIIE 362 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWY 50 >gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537] Length = 377 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 54/347 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------DVD----------- 39 +A++ GG SSE +VS S + +A+ G + V+ D D Sbjct: 5 VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64 Query: 40 -------------RSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 + + + + D+ F V+HGN GEDG +Q + LL P+ + Sbjct: 65 QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ G+ I+ N D + + +K G Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI + + L S +++ L+ E EL GV+G+ V+ I Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY-KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAHT 243 Query: 197 SDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + ++ +PAK+ ++ +EV+ +A A+Q + RG +R DF Sbjct: 244 VPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMDF 303 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 L D + + E N PG T +S+FP + +L+ +++ Sbjct: 304 LLDE-NGIPYLGEPNTLPGFTNMSLFPRLWDDTNMDNAQLVDELIQL 349 >gi|325844429|ref|ZP_08168156.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp. HGF1] gi|325489103|gb|EGC91487.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp. HGF1] Length = 403 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 124/369 (33%), Gaps = 77/369 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50 + V GG S E E+S+ S A++ + V + + + + K Sbjct: 5 VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+A V+HG GEDG +Q EL Sbjct: 65 ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------P 126 IPY+ + A+A+ DK+ K ++ G+P+ + + Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL-------------------QSSSWNHGDQLL 167 P ++KP+ GSS+GI K S+ + + + GD Sbjct: 185 PLMVKPVSLGSSVGISKAKDRASLEEAITEAISYDNKFIVEEMVTQLVEVNCSVIGDFSG 244 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + V + K ++ ++PA++ + K V Sbjct: 245 AKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTKYV 304 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q LA + +G G++R DFL + + V+ EIN PG S+ + F Sbjct: 305 QDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPG----SLSFYLWEKTDRDFTG 360 Query: 288 LLLWMVEDA 296 L+ +VE A Sbjct: 361 LMTSLVELA 369 >gi|293375437|ref|ZP_06621718.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sanguinis PC909] gi|292645990|gb|EFF64019.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sanguinis PC909] Length = 403 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 123/369 (33%), Gaps = 77/369 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50 + V GG S E E+S+ S A++ + V + + + + K Sbjct: 5 VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64 Query: 51 -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75 D+A V+HG GEDG +Q EL Sbjct: 65 ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------P 126 IPY+ + A+A+ DK+ K ++ G+P+ + + Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL-------------------QSSSWNHGDQLL 167 P ++KP GSS+GI K S+ + + + GD Sbjct: 185 PLMVKPASLGSSVGISKAKDRASLEEAITEAISYDNKFIVEEMVTQLVEVNCSVIGDFSG 244 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + V + K ++ ++PA++ + K V Sbjct: 245 AKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTKYV 304 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q LA + +G G++R DFL + + V+ EIN PG S+ + F Sbjct: 305 QDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPG----SLSFYLWEKTDRDFTG 360 Query: 288 LLLWMVEDA 296 L+ +VE A Sbjct: 361 LMTSLVELA 369 >gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative [Verrucomicrobiae bacterium DG1235] Length = 310 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 14/302 (4%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58 +AVL GG S EREVSL A+A F+V DV + L + + F+ L Sbjct: 6 IAVLYGGTSEEREVSLG-SGKAAAAALGKSFEVDLFDVQAYSRLPDGLDPRR-HVVFSTL 63 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 HG+FGEDG Q +++ + Y ++S L+ DK+ +K+ +S+ GVPV ++ + Sbjct: 64 HGSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAI 123 Query: 119 DSQHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 I V+KP+ GSS+G++ + + ++ + L+E + G Sbjct: 124 PGVEEIIGRLGSSVVLKPVAQGSSVGLMFAESE----AKIVGCLKNCEEGRWLVEPRIQG 179 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 E T G++ ++ PKS + Y KY+ + ++ PA+ ++ + +++LA A Sbjct: 180 QEATVGILDGEAM-GVVEIRPKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLATKA 238 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +A GCR +R D + D ++LEIN PG+ S+ P AA +GY+F ELL +VE Sbjct: 239 FEACGCRDYARIDCMVDT-GGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKLVE 297 Query: 295 DA 296 A Sbjct: 298 PA 299 >gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1] Length = 304 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 17/300 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQI-DVDRSVGLVLAHLKPDLAFNV 57 +A++ GG SSEREVSL + +A + +L+ ++ I D + L LA K F Sbjct: 5 IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEIFTISDYRELLSLDLA--KFTRVFLA 62 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG FGE+G+ QA LE L IPY ASA+ MDK+ +K + G+ V + Sbjct: 63 LHGGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYLYSKNGD 122 Query: 118 MDSQHLISP----PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 IS P ++KP + G S +V + + ++ ++ G +LIE+++ Sbjct: 123 DVCFEEISERLGTPCIVKPNREGCSFGVSLVRDLKADLQPAINAAAKFHTG--ILIEEFI 180 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G EL+ + S +SDF+SY+ K+ S + L + + ++ V Sbjct: 181 SGPELSV-CYLNKSTLPIYTVEFESDFFSYDAKFISTKTNATL-SILDRSTHQLVTNYCS 238 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+ R+DF+ + + + +E+N PG+T S+FP+ G F +L+L + Sbjct: 239 AIAEALEL-DYFRADFIV--HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLIL 295 >gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] Length = 361 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 140/342 (40%), Gaps = 57/342 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50 + + G S E E+S+ + + S+++ + V I + +S L K Sbjct: 4 IGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDFD 63 Query: 51 -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 D F V HG GEDG Q + E+ IPY+ Sbjct: 64 KLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYSG 123 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGS 137 +SA +MDK+ +K ++ + V F + + P ++KP + GS Sbjct: 124 CNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEEFFKRCEKNLGYPMIVKPARLGS 183 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEI 192 S+G+ + ++ + + +++L+E++++ E+ C VMG ++ Sbjct: 184 SIGVSKVVDRKNFEEAV--KNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSELEEINK 241 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 +F K S H++PA+I ++ +++ +A + + C G R DFL Sbjct: 242 KNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRIDFLIA- 300 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 K++ EIN PG +S + + +G++F +++ M+ Sbjct: 301 --DKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMIN 336 >gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6] gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6] Length = 331 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 80/328 (24%), Positives = 134/328 (40%), Gaps = 38/328 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK----------- 50 +L GG SSE E+SL S + L V ++++ ++ G + Sbjct: 7 LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEI-KNEGWFDQKERLVYLDIHTKSV 65 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q++ EL IPY G AS+ S +K+ SK Sbjct: 66 KSDEFNESIHIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWY 125 Query: 101 SSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + G+P P + + +K + GSS+G + K + + + Sbjct: 126 DAIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAI 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--S 208 ++ ++H Q+L+E+ V EL P FYSY+ KYS S Sbjct: 186 DKAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGS 243 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + T V + +Q + + + R +SR DF +++ E+N PGM Sbjct: 244 HSITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGM 302 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S+FP+M + G+ F E L +E + Sbjct: 303 TKISMFPKMLQHNGHKFHEFLADCIERS 330 >gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 130/282 (46%), Gaps = 24/282 (8%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V +D RS L DL F +LHG +GEDG +Q +LEL+ +PY SG+LASAL MD Sbjct: 24 VVAVDGTRSSLGDL-----DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMD 78 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVI 144 K +K V+ G+PV P V + + + P +KP + GSS+G+ + Sbjct: 79 KHFTKTVLQQAGIPVAPWTTVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKV 138 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASLDVTEIAVPKSD 198 ++ + + + D++LIE V G E+ + EI V D Sbjct: 139 REWPELDAAMDIAF--AEDDRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRD 196 Query: 199 FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 FY Y KY V PAK+ +++ L A AIG G++R DF Sbjct: 197 FYDYAAKYLDAPGIDLVCPAKLTDAELVQMRALGVRAFDAIGGEGLARVDFFLTAEG--F 254 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 EIN PG TP+S+FP G S+ EL+ +++ A Sbjct: 255 VVNEINTMPGFTPISMFPRCWQETGLSYPELIGELIQVALAR 296 >gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2] Length = 277 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 7/248 (2%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 L D F LHG GE+G +QA ++ I Y+ S S L+MDK +KQ++ +P Sbjct: 31 LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTP 90 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + P V+KP+ GSS+G+ +++ + L ++ + +++I Sbjct: 91 KWQIWEQGQEVYYST---PCVVKPIDNGSSIGVEIVENKEQFFKALKKAE--KYNSKVMI 145 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 EQ ++G E + GV+GD L +P+ FY+YE KY + + PA I D+ + Sbjct: 146 EQKIEGREFSVGVLGDNVLPAI-EIIPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + L ++ +G SR D++ ++ +E N PGMTP S+ P+ A G SF EL Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTKELD-IYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263 Query: 289 LLWMVEDA 296 +VE + Sbjct: 264 CETIVELS 271 >gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37] Length = 380 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 137/353 (38%), Gaps = 62/353 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +AV+ GG S+E +VS+ S + ++ + V V + Sbjct: 8 VAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENLLNE 67 Query: 46 -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 +A K D+ F VLHG GEDG +Q +LE Sbjct: 68 HRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGMLEF 127 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125 + +PY G+ ASA +DK +K + +PV V ++ ++ Q ++ Sbjct: 128 MGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQKKMN 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P+ +KP + GSS+GI + + L + ++ ++ + ELT GVMG Sbjct: 188 YPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDC-KVVVEQGVESPRELTVGVMGID 246 Query: 186 SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 S +++++ KY ++PA + +I + +++ + L + Sbjct: 247 DQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKKFELS 306 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G +R D+ KV+ EIN PG F + G ++ + +E Sbjct: 307 GFARIDYFLC--GDKVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357 >gi|293401980|ref|ZP_06646120.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304638|gb|EFE45887.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 386 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 75/355 (21%), Positives = 139/355 (39%), Gaps = 67/355 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +A+ GG+S E E+S+ S +A DA +++ + + + Sbjct: 8 VAIAFGGVSVEHEISILSAMQAIAAFPDA-YEIVPLYIAKDGRMYSDASFQKTEVFQDLT 66 Query: 43 ---------------GLVLAHLK----------PDLAFNVLHGNFGEDGLVQAILELLEI 77 VL K D +LHG GEDG Q L+ L + Sbjct: 67 KVTQEKYEVQLVREHQRVLMQWKKHHFWKTSRVIDFVLPILHGTNGEDGSFQGFLKTLHV 126 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131 P+ G+L+ AL DK+ K ++ G+P+ P + + P +IK Sbjct: 127 PFAQCGVLSGALGQDKVAMKMILQDRGLPLVPWFYWWKQEPLEEAFFAKAQRLGYPMIIK 186 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD----------GIELTCGV 181 P GSS+GI V++ Q + + + + D+++IE+ + G Sbjct: 187 PSNLGSSIGIAVVQNAQELKKAMEEGF--QYDDKIVIEKMITPLREINASVLGNMEDAKC 244 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + + D Y K + + +PA + + +E+ A + QA+ Sbjct: 245 SVLEEVVKQDTILSFQDKYEGHAKSKGMAGTNRRVPASLEKEEAQEITSYALASFQALQA 304 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G+ R DFL + ++ ++ EIN PG S+ + +G +F +LL +++ Sbjct: 305 EGVVRIDFLMNADTKDIYVNEINSIPG----SLAYYLWEASGLTFTKLLEELIQL 355 >gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris str. PCC 9511] Length = 310 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 14/269 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + + D+ F +LHG GEDG + +L+ + P GIL SAL MDK+ K++ Sbjct: 42 NFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIF 101 Query: 101 SSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 S +P + + ++ + P +KP GSSLGI K Sbjct: 102 SHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSE 161 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSS 208 I L ++ +++IE+ +D EL CG++G+ L +EI V S + S Sbjct: 162 IIKALQKAWEI--DSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS 219 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +++ ++PA I I ++++ +A + +A+ G +R DF + +S K+F EIN PG Sbjct: 220 MDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGF 279 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T S+FP + +G + +L+ +V+ +S Sbjct: 280 TSKSMFPMLWNASGLNIDQLVAKLVDISS 308 >gi|222099401|ref|YP_002533969.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571791|gb|ACM22603.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 251 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 11/252 (4%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 + DL FNVLHG FGEDG +Q+IL+ L + YT S +S L DK+ + + + Sbjct: 2 KEFDLVFNVLHGTFGEDGSLQSILDFLGVRYTGSDAFSSMLCFDKLLAYRFLKDFVKIPN 61 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 V + P V+KP + GSS+G+ + + D+ L + +++ Sbjct: 62 F---VEVKEHIDSSPVGYPCVVKPRREGSSIGVFICESDEEFQRALKEDLPLY--GSVIV 116 Query: 169 EQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++Y+ G E+T ++ + FY Y KY+ + +LPA + + Sbjct: 117 QEYIPGREMTVSIIETEEGFKVLPILELRPKRRKFYDYIAKYTEGETEFLLPAPLKPEEE 176 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + V+ A A GCRG R D +F + + F+LEIN PG+T +S P A AG Sbjct: 177 QRVKETALRAFTEAGCRGFGRVDGIF--FNGEFFFLEINTVPGLTELSDLPASAKAAGIE 234 Query: 285 FRELLLWMVEDA 296 F EL+ +++ A Sbjct: 235 FEELIDIIIKSA 246 >gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 249 Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 13/251 (5%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F LHG GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V + G+P+ P + +N Sbjct: 2 FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61 Query: 115 RFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 R + + P ++KP + GSS+G+ + K + L+++ H Sbjct: 62 RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVEAF--RHDSD 119 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +LIE+++ G E T ++GD L I P Y YE KY S + + P+ + ++ + Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAPGVF-YDYEAKYLSDKTQYFCPSGLSSELEQ 178 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ LA A+QA+ C G R D + D + LE+N PGMT S+ P A +G SF Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237 Query: 286 RELLLWMVEDA 296 +L+ ++ A Sbjct: 238 SQLVARILTLA 248 >gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM 13965] Length = 426 Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 13/259 (5%) Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D+ F VLHG FGEDG VQ +LEL IPY +G++ASA+ MDK K++ + G+PV Sbjct: 152 EPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLPVV 211 Query: 109 PSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P ++V + + P KP GSS+GI ++ L ++ Sbjct: 212 PFLVVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEAF- 270 Query: 160 WNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + ++++E+ VD E ++ D V P+ FY+Y KY+ S ++PA Sbjct: 271 -AYDRKVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIVPA 329 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + +E+QRLA A QAI G++R DF + + ++ EIN PG T +S++P++ Sbjct: 330 PLPPRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYPKL 389 Query: 278 AAYAGYSFRELLLWMVEDA 296 AG +R+L+ ++E A Sbjct: 390 WEAAGLPYRDLITRLIELA 408 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + +L GG S E EVSL S ++ A++ F+ I + R +L H P Sbjct: 44 VGILFGGRSGEHEVSLMSARSVFEAMDRRRFEPVPIGITREGLWILPHDAP 94 >gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3] gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3] Length = 383 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 13/257 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++ + G+PV Sbjct: 122 DIDVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGS 181 Query: 110 SILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ Q + P +KP +GGSS+GI ++ + + + ++ Sbjct: 182 YAVLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWADLDTAIKAAR--ASDPKV 239 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-------FYSYELKYSSLNSTHVLPAKI 219 L+E + G E+ CGV+G E +VP FY +E KY S + +PA + Sbjct: 240 LVESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMSDATHFDVPANL 299 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + +EV+ A A +A+ C G++R D V E+N PG TP S+FP M Sbjct: 300 SHAVREEVRGAAIAAFEALDCAGLARVDMFVTA-DDHVIINEVNTMPGFTPTSMFPRMWE 358 Query: 280 YAGYSFRELLLWMVEDA 296 +G ++ +L+ +V A Sbjct: 359 ASGVTYPQLVDRLVRLA 375 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 A+L GG S+E +S S AL+ + V + +D V+ P Sbjct: 11 ALLFGGRSTEHAISCISASGVLRALDRDVYDVVPVGIDTHGRWVVLPDDP 60 >gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM 44291] Length = 326 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 143/327 (43%), Gaps = 54/327 (16%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------------- 51 + L +++ I + R V + P Sbjct: 1 MAQLPKETYEIVPIGITREGAWVTGSIDPVGGATLPEVAPGREVALTATPQRRGTISDVA 60 Query: 52 --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 D+AF VLHG +GEDG +Q EL +PY G+LASA +MDK +K++VSS Sbjct: 61 TGEVLEVVDVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSA 120 Query: 104 GVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 G+ V ++V R ++ + P +KP +GGSS+G+ + + + + Sbjct: 121 GIAVTDEVIVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAELDDAIAVAL-- 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNST 212 + ++E + G E+ GV+ V + FY +E KY T Sbjct: 179 QSDSKAIVEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDGEEGFYGFETKYLDEGVT 238 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 +PA ++ ++++ LA A +A+GCRG+SR DF EIN PG TP+S Sbjct: 239 ATIPAPYSEEVTQQIRSLAITAFRALGCRGLSRVDFFLTERG--PVLNEINTMPGFTPIS 296 Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299 ++P++ +G S+ ELL +++ A Sbjct: 297 MYPQVWKASGVSYPELLHTLIQTALAR 323 >gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315] gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315] Length = 321 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F VLHG GEDG +Q LE+L +PY + +++S+++MDK+ +K+V+ S G+P + Sbjct: 61 VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTV 120 Query: 113 VNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 L ++ P +KP GSS+GI + + + + + ++ Sbjct: 121 YIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQTKVELRKAIQLAL--TYDSRV 178 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 LIEQ V E+ G++G+ + T + DFY Y+ KY T +PA + I Sbjct: 179 LIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAKYVDNKITMAIPADVDQSIV 238 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 E++ A +A +A+G G+SR DF +V+ E+N PG T S++P + G + Sbjct: 239 TEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTMPGFTQWSMYPLLWENMGLA 297 Query: 285 FRELLLWMVEDA 296 + +L+ +V A Sbjct: 298 YPDLIEELVTLA 309 >gi|313888855|ref|ZP_07822516.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845224|gb|EFR32624.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 390 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 142/365 (38%), Gaps = 77/365 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK------ 50 + V+ GG S E EVS+ +G ++ + + I + + + L + K Sbjct: 4 IGVIFGGRSVEHEVSVITGMQIIENMDKSKYNPIPIYITKDGKFLSGESLKNFKAYKDQD 63 Query: 51 -----------------------------------------PDLAFNVLHGNFGEDGLVQ 69 D F LHG FGEDG Q Sbjct: 64 FHDGVEVFFKPEYGNKNLYYVKHNPKKLFKAEYDSVEVYQKIDAIFFALHGTFGEDGCTQ 123 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-------MDSQH 122 + EL+ +PYT G++++A+ MDK+ ++V S +P+ R ++ Sbjct: 124 GLFELMGMPYTGCGVMSAAVGMDKVIMRKVFESEDIPMTKYKYFYREELKNLKGLIEKCK 183 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 ++ P +KP GSS+GI ++ + L ++ ++ ++ E V+ E+ V+ Sbjct: 184 DLNFPLFVKPANLGSSIGISRVENALDLSKALEVAAHYDR-KIIVEEAVVNPREINVAVL 242 Query: 183 GDASLDVTE------------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G + K S K S + LPA++ ++ KE++ L Sbjct: 243 GYENDLRVSAAEEPLGFKDLLKYEDKYVSGSKGAKSSQKHQNKKLPAELKPELEKEIKEL 302 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A AI G++R DFL D K + EIN PG SI + G ++L+ Sbjct: 303 AKKAFSAIDGAGVARIDFLVD--GDKAYVNEINTLPG----SIAFYLYEVDGLMIKDLIT 356 Query: 291 WMVED 295 ++E Sbjct: 357 RLIEL 361 >gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 377 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 145/345 (42%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A+L GG SSE +VS S + A+ G + V+ + ++ + LA Sbjct: 6 VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + LL PY + Sbjct: 66 QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+++ + + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+GI +K L S +++ L+ + EL GV+G+ V+EI Sbjct: 186 SSVGISRVKNAVEFETALADSFQYDY-KVLIEQAVKGPRELEVGVIGNEEPIVSEIGAHT 244 Query: 197 SDFYSYELKYSSLNS--------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + N+ +PA++P ++ +EV+ +A +++ + RG +R DF Sbjct: 245 VPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 L D + + E N PG T +S+F + Y+ +L+ M+ Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348 >gi|308446762|ref|XP_003087258.1| hypothetical protein CRE_28014 [Caenorhabditis remanei] gi|308258347|gb|EFP02300.1| hypothetical protein CRE_28014 [Caenorhabditis remanei] Length = 328 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 25/317 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 +AV+ GGIS E EVS++S + A+ G + + R + Sbjct: 9 VAVIGGGISDEHEVSIASAASVVRAVAALGLEAVPFTIARDGRWLTDDGHRLPAHEALAR 68 Query: 49 -LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 DLAF VLHG GEDG + +L + IP+ + + A AL MDK +K + G+ Sbjct: 69 IADCDLAFPVLHGVDGEDGAIAGLLRMAGIPFVGAPVRAGALGMDKWATKLIADDLGIAT 128 Query: 108 CPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + PP V+KP GGSS G+ V+ + + Q+ +G Sbjct: 129 SRGALAGGWAAPVGAAFASELRPPLVVKPTTGGSSNGVFVVADRSDLVATVEQAR--AYG 186 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----YELKYSSLNSTHVLPAKI 219 + +L+E+YV G E+ V DA+ + + + + ++ +PA + Sbjct: 187 ETVLVEEYVRGREVDIAVFRDAAGGLRVGSTLEIGVVPGGVFDRAEKYDGSAEFTIPASL 246 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 +++ A L ++A+GC G++R DF V E+N PGMT S P M A Sbjct: 247 DPREEGAIRQAAVLLYEALGCAGVARFDFF--ATDDGVVLNEVNTSPGMTEQSQVPRMYA 304 Query: 280 YAGYSFRELLLWMVEDA 296 G + L+ ++ A Sbjct: 305 AVGLDYAGLVGELIAAA 321 >gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp. salmonicida A449] gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 329 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 131/322 (40%), Gaps = 33/322 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44 +L GG SE EVSL S L G +V+++++ D+ + Sbjct: 8 LLCGGGGSEHEVSLRSANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDKLLSF 67 Query: 45 VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D +HG GE G +Q+ LEL +PY AS + +K+ +K +S+ G Sbjct: 68 DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127 Query: 105 VPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P + + + IK GSS+G + + + + Sbjct: 128 IPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNETDLLQGIKDAF 187 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + +Q+LIE+ V EL V + EI VP+ FY+YE KYSS + T Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSSASHTAT 245 Query: 215 LPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + A A + + +SR DF ++ EIN PGMT +S Sbjct: 246 SLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304 Query: 273 IFPEMAAYAGYSFRELLLWMVE 294 +FP++ + G+SF L ++ Sbjct: 305 MFPKLLEHHGHSFAHYLEQILR 326 >gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 110] gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110] Length = 330 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-----GLVLAHLKP---- 51 + +L GG + ER VS++S +A AL +A + DV+ V +L H +P Sbjct: 5 ITILFGGSNRERLVSVASAQALHQALPEA--DLWWWDVEDRVHVVQSKQLLEHARPFEDE 62 Query: 52 --------------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D + LHG E+G +Q + E +P+T SG +S L+ Sbjct: 63 FKPGTSGIPLVQALDQAKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLA 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+ +K + GV +I + +D+ + KP + GSS G+I + Q + Sbjct: 123 FDKIAAKHFAALGGVTPPANIAL--DDIDAAFAEYGRLIAKPARDGSSYGLIFVNARQDL 180 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + I + G +P + Y KY Sbjct: 181 VAVRNAAKHEEYVIEPYIAGVEATCGVLERTDGSIVSLPPIEIIPGEGNFDYAAKYLLST 240 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + +I +++ A LAH+A+ C G SRSDF+ + +LE N PG+T Sbjct: 241 TQEICPGRFTPEITAALKQQAMLAHRAMSCTGYSRSDFIVSAKG--LVYLETNTLPGLTK 298 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ G +F + L +VE A Sbjct: 299 SSLYPKALKAEGIAFVDFLRGLVELA 324 >gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides Length = 377 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A++ GG SSE +VS S + +A+E G +++ + ++ + L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+ N + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189 SS+GI + + L S +++ L+ E EL GV+G+ Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +Y Y K+ + +PA++ ++ KEV+++A A++ + RG +R DF Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58] gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58] Length = 808 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 130/331 (39%), Gaps = 40/331 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S E E+SL S + + + + + R + Sbjct: 453 IGLVCGGKSCEHEISLLSARHVSHRFSQEYYDCTFFVISRDGLWNVVQDLNTPLPKEQGS 512 Query: 49 -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 L D +LHG FGEDG +Q E+L PY +L +A+SMDK+ +K Sbjct: 513 PVLSSEIAKALLSIDFFLPILHGPFGEDGSIQGFFEILGKPYGGPDLLPAAISMDKLMTK 572 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQ 148 +V S+ GVPV P ++ F + P V+K GSSLGI ++ + Sbjct: 573 RVASAVGVPVVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKE 632 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ ++ + E ++ E+ +G + + + Sbjct: 633 ELEEKISEAFLYDTD-IFIEESRLESREIEISCIGQPYSFYIAKPNERRGSQGFIGYHEK 691 Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + A+I D+ V+ A +AI +G +R DF D + EI Sbjct: 692 YGLNGISSARIIFDLQLPKESENRVKEFAERVFKAIQGKGCARIDFFLDEE-GNYWLSEI 750 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N PGMT S F + +S ++L +++ Sbjct: 751 NPIPGMTASSSFLRAFEQSEWSAEKVLDYLI 781 >gi|91977855|ref|YP_570514.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5] gi|91684311|gb|ABE40613.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 329 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 39/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKP----- 51 +L GG S ER VS++S +A +AL DA D + V LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHAALPDAELWFWN---DDDLVHVVAADALLAHTRPFEESF 61 Query: 52 --------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 D A LHG E+G +QA+ E+ +P+T SG AS ++ Sbjct: 62 HPAGGGIGPLERALDRAATEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHVA 121 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+ +K+ + G+ I + + + KP + GSS G+ I Q + Sbjct: 122 FDKIAAKRFAAIAGIRAPAGITL--DHAERALATYGRLIAKPTRDGSSYGLFFIDAKQDL 179 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + ++ + + + G VP + Y+ KY + + Sbjct: 180 VAVRNAAKTEDYLIEPFVCGVEATCGVLEQADGALLALPPVEIVPADGGFDYKAKYLAKS 239 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + ++ + A AH+ +GCRG SRSDF+ +LE N PG+T Sbjct: 240 TQEICPGRFTPEVSAVIMDYAVKAHRVMGCRGYSRSDFIVAADG--PIFLETNTLPGLTK 297 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ G SF + L + A Sbjct: 298 ASLYPKALKAQGISFDDFLRGQIAIA 323 >gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 386 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A++ GG SSE +VS S + +A+E G +++ + ++ + L Sbjct: 15 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 75 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+ N + +K G Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189 SS+GI + + L S +++ L+ E EL GV+G+ Sbjct: 195 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 253 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +Y Y K+ + +PA++ ++ KEV+++A A++ + RG +R DF Sbjct: 254 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 313 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 314 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 358 >gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides] gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 377 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A++ GG SSE +VS S + +A+E G +++ + ++ + L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+ N + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189 SS+GI + + L S +++ L+ E EL GV+G+ Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +Y Y K+ + +PA++ ++ KEV+++A A++ + RG +R DF Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|323144949|ref|ZP_08079509.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei YIT 12066] gi|322415228|gb|EFY06002.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei YIT 12066] Length = 331 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDV---------------DRSVGLVL 46 +L GG +E ++SL S + + G + V + ++ D+ V Sbjct: 6 LLCGGDGAEHQISLISADFIEKKINEIGEYNVIRAEIHNKKFILKDGTAGYFDKDSRFVT 65 Query: 47 AHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 D+ A +HG GE G +Q+ LE+ IPY AS +K+ +K +++ Sbjct: 66 GSDCLDIYCAVPCIHGVPGETGDIQSFLEIFNIPYIGCKSEASHNCFNKITTKLYLTALN 125 Query: 105 VPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 +P P ++V R +K GSS+G + K + + ++++ Sbjct: 126 IPNTPFLIVPRQDELSKANALKAFDSWQDVYVKAASQGSSIGCYHVTKKEDLWDSVVEAF 185 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLN--ST 212 +++ ++IE+ + EL C +P + FY+++ KYS + T Sbjct: 186 TFSED--VIIEKTIKHRELECAAYEIDGNIYITNPGEIIMPDNLFYTFDEKYSKDSGSVT 243 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 V P + +I + ++ A A+ + R +SR DF ++ EIN PGMTP+S Sbjct: 244 TVEPQNLSDEIKQMIRDYARKAYLGLKLRDLSRIDFFLSDH-NEIIINEINTFPGMTPIS 302 Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297 +FP++ + G+ E L +E A+ Sbjct: 303 MFPKLLEHNGHQMTEFLRQAIERAA 327 >gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides] Length = 377 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 77/346 (22%), Positives = 146/346 (42%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLV----------LAHL 49 +A++ GG SSE +VS S + +A+E +++ + ++ + L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL+ PY + Sbjct: 66 QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ I+ N + +K G Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189 SS+GI + + L S +++ L+ E EL GV+G+ Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +Y Y K+ + +PA++ ++ KEV+++A A++ + RG +R DF Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D + + E N PG T +S+F + Y+ + +L+ +++ Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >gi|327485602|gb|AEA80008.1| D-alanine--D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 305 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 112/316 (35%), Gaps = 51/316 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47 +L GG SSE E+SL S LE F V ++++ + L Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67 Query: 48 HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 K D +HG GE G +Q++LEL IPY G ASA S +K+ SK + Sbjct: 68 SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127 Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 G+P P + + + T +K + GSS+G + + S + Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEVSAYEMNGKL 187 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 G+ + E S Y + Sbjct: 188 YISKPGEVIAPEGTF-----------------------YSYEEKYSANSHARTVLEAENL 224 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + R +SR DF +++ E+N PGMTP+S+FP+M Sbjct: 225 TEKHKELIQTYAERVFI--HMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPISMFPKM 281 Query: 278 AAYAGYSFRELLLWMV 293 + G+ F E L+ V Sbjct: 282 LEHNGHRFSEFLVQCV 297 >gi|119717708|ref|YP_924673.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] gi|119538369|gb|ABL82986.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614] Length = 311 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 90/310 (29%), Positives = 140/310 (45%), Gaps = 19/310 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AV+ GG S E +VSL+S A A+ L+ + V ++ + R Sbjct: 5 VAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAAVEVL 64 Query: 50 -KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 + D+ F V HG GEDG + A+ EL +PY SG+ A AL+MDK +K V ++ G+ Sbjct: 65 RRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALGIATA 124 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 LV T + + P V+KP+ GSS+G+ + + S+P L + D+ L+ Sbjct: 125 AGRLVTAATATQE-TWTGPVVVKPVAAGSSIGVAFVSEPASLPPALATAL--ALDDRALV 181 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKE 226 E+ V G E+ V+ A V + + +PA + K Sbjct: 182 EELVTGREIDVAVLRRADGAVVASPPLEIVADGLFDFDAKYGGRADFRVPAVLDEVDAKA 241 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ A + A+GC G++R DF E+N PGMT S P M A AG + Sbjct: 242 LEGAAVATYDALGCSGVARVDFFLTDTG--PVLNEVNTVPGMTEHSQVPRMFAAAGLPYP 299 Query: 287 ELLLWMVEDA 296 +LL +V A Sbjct: 300 DLLDELVCGA 309 >gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071] Length = 345 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 70/338 (20%) Query: 25 ALEDAGFKVSQIDVDRSVGLVLAHLKP--------------------------------- 51 A++ + V I + LA +P Sbjct: 4 AIDREKYDVLPIGITGEGRWALAVDEPARMAIADRAMPTVESLAESLEGSVVLPFDPSVR 63 Query: 52 -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 D+ F +LHG +GEDG +Q +LEL PY +G+LASA+ DK Sbjct: 64 EVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKE 123 Query: 95 RSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGGSSLGII 142 K++ +S G+ V P +++ D P +KP +GGSS+GI Sbjct: 124 YMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGIS 183 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFY 200 + + + ++ H + LIE V G E+ CGV D +P + Sbjct: 184 KVDGFDGLDEAIAEAR--RHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDH 241 Query: 201 SYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 +Y +++ ++PA + + EVQRLA A +A C G+ R+DF Sbjct: 242 AYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFFLT--DDGFV 299 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG TP+S++P+M +G + EL+ +++ A Sbjct: 300 INEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQAA 337 >gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 248 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 124/247 (50%), Gaps = 9/247 (3%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LV 113 LHG +GEDG VQ LE L IPY+ S +L+S + MDK SK+++ G+ I + Sbjct: 3 ALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM 62 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 +D + P V+KP GGSS+G+ ++ + L W +++IE+Y+ Sbjct: 63 EDLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 120 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+TC + ++F+ Y KY ++ + ++P ++ + V + + Sbjct: 121 GDEITCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLA 178 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A+ C +R D + + +EIN PGMT S+ P+ AA AG + +LL ++ Sbjct: 179 CYKALKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMII 236 Query: 294 EDASCLR 300 E + +R Sbjct: 237 ETSLRVR 243 >gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Streptococcus suis 98HAH33] Length = 283 Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 12/273 (4%) Query: 32 KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 + ++ + + K + F VLHG GEDG +Q LE+L +PY + IL+S+++M Sbjct: 3 NATIVEEQKIRPSDIYEEKA-VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 61 Query: 92 DKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 DK+ +K+V+ S G+ P + ++ + + ++ P +KP GSS+GI + Sbjct: 62 DKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAE 121 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYE 203 + L + + ++L+EQ V+ E+ G D + V FY Y+ Sbjct: 122 DLAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYD 179 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY T +PAKI I ++ A A +AIG G+SR DF +F E+N Sbjct: 180 AKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELN 238 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 PG T S++P + G ++ +L+ +V A Sbjct: 239 TMPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 271 >gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223] gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223] Length = 337 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 37/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S ++L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQTALAQWGSIFVKAASQGSSVGCYKVDD--SAKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELKYSS 208 + ++ + +++E+ + EL V + + +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185] gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185] Length = 337 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 37/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S ++L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + S + Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDD--SAKVAG 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELKYSS 208 + ++ + +++E+ + EL V + + +S Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +I ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|46446032|ref|YP_007397.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 798 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 51/348 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 +A++ GG S ER +SL+S ++ L ++ I VD Sbjct: 4 IALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTPADF 63 Query: 43 GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 L DL F V+HG FGEDG +Q ILE +++P+ +G A A Sbjct: 64 DFKLKKSAQAMNREEFKKILRNIDLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACA 123 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGI 141 K + Q++ P + V T D + S ++KP GGSS+G+ Sbjct: 124 EMFCKYHASQILHQNRFPAFMKLEVCPETNDLAPIKSFFEQHQLKRAIVKPTMGGSSIGV 183 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 ++ + + + LIE + +G E T V+ + + P S Sbjct: 184 TSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEGTEFTVVVLQNQQSKPVALI-PTEIEMS 242 Query: 202 YELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 Y+ + PA+ I + +++ A R +R D Sbjct: 243 YQNHQIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQKAEAIFTLFHMRDFARLDGWLL- 301 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +++ ++N GM S A+ G + R++ ++ ++CLR Sbjct: 302 NDGTIYFTDLNPISGMEQNSFLFRQASLLGLTHRDVFRLII-TSACLR 348 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 4/118 (3%) Query: 3 VLMGGISSEREVSLSSGKAC-ASALEDAGFKVSQ-IDVDRSVGLVL--AHLKPDLAFNVL 58 VL GG ++ER+VSL SG L + + + L A+ +L Sbjct: 369 VLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKNDLIWQLPYAYTLDHTVEEIL 428 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 H + + + GI + Q + + Sbjct: 429 HRCLAREASNKKLPNYFNSICEQLGIPYNFQETPSSMCLQDFYQLSASNQAFVFIAMH 486 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM--AAYAGYSFRELLLWMV 293 + + +R D + ++K+ +E N PG+TP ++F + A + LL ++ Sbjct: 726 LQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVFYQQGLAEKKPLNPLSLLEIII 783 >gi|126090206|ref|YP_001041687.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155] gi|126174499|ref|YP_001050648.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155] gi|125997704|gb|ABN61779.1| D-alanine--D-alanine ligase [Shewanella baltica OS155] gi|125999862|gb|ABN63932.1| hypothetical protein Sbal_4569 [Shewanella baltica OS155] Length = 337 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S ++L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDSELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + + L Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211 + + + +E+ + + Y + Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247 Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ + +I ++++ A A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M G+ F E L ++ Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum] Length = 316 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 40/305 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + +L GG S+E +VSL S + +A+ ++V + + R + Sbjct: 3 IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62 Query: 46 ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + + F +LHG GEDG +Q LE + +PY +G+L SA Sbjct: 63 NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141 MDK+ +K ++ + G+P P + V + + + P IKP GSS+GI Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + L ++ ++ + IE+ D + V FY Sbjct: 183 TKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 Y KY +PA+IP + + Q A A+ +G G+SR DF ++F E Sbjct: 243 YNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301 Query: 262 INVQP 266 +N P Sbjct: 302 LNTIP 306 >gi|304408639|ref|ZP_07390260.1| D-alanine/D-alanine ligase [Shewanella baltica OS183] gi|307305468|ref|ZP_07585216.1| D-alanine/D-alanine ligase [Shewanella baltica BA175] gi|304352460|gb|EFM16857.1| D-alanine/D-alanine ligase [Shewanella baltica OS183] gi|306911771|gb|EFN42196.1| D-alanine/D-alanine ligase [Shewanella baltica BA175] Length = 337 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S ++L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTTAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + + L Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211 + + + +E+ + + Y + Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247 Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ + +I ++++ + A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQHVSAEISEQIRAYSIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M G+ F E L ++ Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|83815518|ref|YP_446302.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855] gi|294508238|ref|YP_003572296.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8] gi|83756912|gb|ABC45025.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855] gi|294344566|emb|CBH25344.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8] Length = 434 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 94/384 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 + +++GG++ E EVS+ + A+AL+ + I V + Sbjct: 24 VGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAYRDLD 83 Query: 45 ----------------------------VLAHL-------KPDLAFNVLHGNFGEDGLVQ 69 +L L + D+ LHG GE+G VQ Sbjct: 84 ALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQ 143 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DS 120 + E +PYT +G+ SAL MDK+ SK+V G+PV + + + Sbjct: 144 GLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDEC 203 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------- 173 + + P V+KP + GSS+GI + + + + + D++++E+ V+ Sbjct: 204 EATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDAL--RYDDKVVVEKAVEALREINC 261 Query: 174 ---GIELTCGVMGDASLDVTEIAVPKSDFYSYE------------------LKYSSLNST 212 G ++ + Y Sbjct: 262 SVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQD 321 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++PA + + + +Q LA C G+ R DF+ D + +V++ EIN PG S Sbjct: 322 RIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG----S 377 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 + +G SF L+ +V A Sbjct: 378 FSFYLWEPSGVSFDALVDRLVTIA 401 >gi|330836876|ref|YP_004411517.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374] gi|329748779|gb|AEC02135.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374] Length = 388 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 142/369 (38%), Gaps = 76/369 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AVL GG S E +VS S + L AG+ V I + R+ L Sbjct: 4 VAVLSGGRSPEHDVSRMSAENICKELVAAGYGVLPIVITRNGRWFLQDVHESVAVIRQEA 63 Query: 47 ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L D+ F V HG GEDG +QA+LEL +PY SG +AS + Sbjct: 64 ERGVSIHPGDGLWMNGEKLAVDIVFPVTHGTEGEDGRLQALLELAHLPYAGSGTVASMMG 123 Query: 91 MDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPP-------------------- 127 M K +K V G+PV PSI + + + P Sbjct: 124 MYKNLAKDVARILGIPVTPSILLSPDDIAWLGNDEDAPFPRLFTSFDISPDSTGTARADL 183 Query: 128 ------------YVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++KP GSS+G+ + + I LD + + L+ D Sbjct: 184 FLGVLQEKLGKSLLVKPEASGSSVGVTALPQPGAEIFLDAVFMAYIPGERVLVETFIPDV 243 Query: 175 IELTCGVMGDASLDV------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEV 227 +EL C ++ V + SY++KYS T P I + + + Sbjct: 244 MELECALLEAEDEIVTAGPGLVRKPAGEESILSYDIKYSVHRHATMEYPPPIAREEAEMI 303 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A A+GC G +R DF DP ++F+ EIN PG+T S +P + G Sbjct: 304 ATYARSLFSALGCTGYARVDFFIDPSGKPDARIFFNEINTLPGLTDTSHWPFLMKCKGLE 363 Query: 285 FRELLLWMV 293 + ++LL ++ Sbjct: 364 WPQMLLEIL 372 >gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist] gi|39930872|sp|Q83G28|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist] Length = 347 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 54/344 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48 +L GG S E VS +S +A + D + V + + + G V+ + Sbjct: 6 LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++ DL F +LHG FGEDG +Q +L+LL+IPY SG Sbjct: 65 NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134 + ASA +MDK +K + S G+PV P L+ + P +KP+ Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G + + +P+ + + + + + + V Sbjct: 185 AGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELVFV 244 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S Y+ LN + + + + + + +GCR +R DF Sbjct: 245 KHSGSKFYDYSAKYLNPVEFVIPAQFDNTDGYAEIASKVFFE-LGCRHYARIDFFVTESG 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + EIN PG+T SIFP + +++ ++ A C Sbjct: 304 --LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343 >gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27] gi|39930876|sp|Q83I36|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27] Length = 347 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 54/344 (15%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48 +L GG S E VS +S +A + D + V + + + G V+ + Sbjct: 6 LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64 Query: 49 -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 ++ DL F +LHG FGEDG +Q +L+LL+IPY SG Sbjct: 65 NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134 + ASA +MDK +K + S G+PV P L+ + P +KP+ Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS G + + +P+ + + + + + + V Sbjct: 185 AGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELVFV 244 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 S Y+ LN + + + + + + +GCR +R DF Sbjct: 245 KHSGSKFYDYSAKYLNPVEFVIPAQFDNTDGYAEIASKVFFE-LGCRHYARIDFFVTESG 303 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + EIN PG+T SIFP + +++ ++ A C Sbjct: 304 --LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343 >gi|160875203|ref|YP_001554519.1| D-alanyl-alanine synthetase A [Shewanella baltica OS195] gi|189083050|sp|A9L0H9|DDL_SHEB9 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|160860725|gb|ABX49259.1| D-alanine--D-alanine ligase [Shewanella baltica OS195] gi|315267396|gb|ADT94249.1| D-alanine/D-alanine ligase [Shewanella baltica OS678] Length = 337 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S ++L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N+F + +K GSS+G + + L Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211 + + + +E+ + + Y + Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247 Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ + +I ++++ A A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M G+ F E L ++ Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3] gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3] Length = 336 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 37/326 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLA-------------- 47 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 48 ---HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 KP D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N++ + +K GSS+G + + L Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVADVL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210 + + +++E+ + EL V V + + + Sbjct: 188 KDAF--GYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ +P DI ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|227488097|ref|ZP_03918413.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227541494|ref|ZP_03971543.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51866] gi|227091959|gb|EEI27271.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227182776|gb|EEI63748.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum ATCC 51866] Length = 315 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 8/255 (3%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F VLHG GEDG +Q + EL +PY +G+LASA MDK +K++ G+P+ + Sbjct: 61 DVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDL 120 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ ++ P +KP +GGSS+GI ++ I + + + + E Sbjct: 121 VLEGGEEFIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPKVIIEEEIK 180 Query: 172 VDGIELTCGVMGDASLDV------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +E D + ++ FY + KY + +PA++ + Sbjct: 181 GIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIPARLSEEETA 240 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 V+ +A +A+ C G++R DF EIN PG TP+S++P++ G S+ Sbjct: 241 RVKEIAVQTFKALNCNGLARVDFFVTEHG--PVINEINTLPGFTPISMYPQVFQAEGISY 298 Query: 286 RELLLWMVEDASCLR 300 +LL ++E A + Sbjct: 299 GDLLHILIEQALATK 313 >gi|300172646|ref|YP_003771811.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887024|emb|CBL90992.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 377 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 144/346 (41%), Gaps = 56/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A+L GG SSE +VS S + A++ G ++++ + ++ + L Sbjct: 6 VALLFGGNSSEHDVSKRSAQNFYDAIKATGKYEITVFAIAQNGYFLDPESSNRVLALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL PY + Sbjct: 66 QPIVDAYMAKIDTTDPLARISALSEGGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ G+ ++ + +K G Sbjct: 126 PLRGHAVSFDKAMTKELLTVNGIRNTKYVVLDPKTAKEWTWEKVVAALGDIVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195 SS+GI K L S + ++L+EQ V G EL GV+G+ V+EI Sbjct: 186 SSVGISRAKNAVEFEAALSDSF--QYDYKVLVEQAVKGSRELEVGVIGNEEPIVSEIGAH 243 Query: 196 KSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + N+ +PAK+P + EV+ +A A++ + RG +R D Sbjct: 244 TLPNQGSGDAWYDYNNKFVDNSDVLFEIPAKLPESVTNEVKDMAIQAYKVLNLRGEARMD 303 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 FL D + + E N PG T +S+F + Y+ +L+ ++ Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVKLVDMLI 348 >gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 286 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 129/256 (50%), Gaps = 12/256 (4%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ F ++HG GEDG +Q +L + +P+ SG+L SA++MDK +K+V+ G+ V P Sbjct: 16 QIDVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAP 75 Query: 110 SILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + NR T + P +KP GSS+G+ + + + ++ Sbjct: 76 FVCFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSAD--AFAAALALALSYD 133 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIP 220 ++L+E + G E+ C V+G+A+ + Y + +++ V+PA I Sbjct: 134 HKVLVEAAIVGREIECAVLGNATPQASVCGEVVVHDAFYSYETKYISAHGADIVIPADIY 193 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + +Q++A A+QA+ C G++R D ++ E+N PG T +S++P++ Sbjct: 194 AHTQQRIQQIAVQAYQALDCAGMARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQA 252 Query: 281 AGYSFRELLLWMVEDA 296 +G +R L+ ++E A Sbjct: 253 SGLDYRSLITQLIELA 268 >gi|298378695|ref|ZP_06988579.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli FVEC1302] gi|298281029|gb|EFI22530.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli FVEC1302] Length = 215 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 4/173 (2%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P ++KP + GSS+G+ + + ++ L + H +++LIE+++ G E T ++G Sbjct: 46 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSGPEFTVAILG 103 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + L P FY YE KY S + + PA + +Q L A +GC+G Sbjct: 104 EEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 162 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R D + D + + LE N PGMT S+ P A AG SF +L++ ++E A Sbjct: 163 GRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 214 >gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20] Length = 377 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 141/346 (40%), Gaps = 54/346 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSV----------GLVLAHL 49 +A++ GG SSE +VS S + A+ G ++++ + ++ L L Sbjct: 6 VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + +LL PY + Sbjct: 66 RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGG 136 + A+S DK+ +K++++ + I+V+ + +K G Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ K L S +++ L+ EL GV+G+ V+EI Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY-KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAHH 244 Query: 197 SDFYSYELKYSSLNS--------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + N+ +PA +P + EV+ +A A++ + RG +R DF Sbjct: 245 VPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 L D + + E N PG T +S+F + Y+ EL+ +++ Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349 >gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4] gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4] Length = 336 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150 S+ G+P P I +N++ + +K GSS+G + + Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVAGVL 187 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + G + + + SS Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKA 247 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ +P DI ++++ A A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M G+ F E L ++ Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330 >gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68] gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68] Length = 395 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 131/266 (49%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKADDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ AG S+ EL+ ++E Sbjct: 366 TPISMYPKAWDAAGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|146342495|ref|YP_001207543.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium sp. ORS278] gi|146195301|emb|CAL79326.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium sp. ORS278] Length = 329 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 41/327 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKP-------- 51 +L GG + ER VS++S KA +AL +A + D S ++AH KP Sbjct: 5 ILFGGSNKERLVSVASAKALHAALPEADLWFWEADDTVQQASGPALVAHAKPFEEPFTAD 64 Query: 52 -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 D + LHG E+G +Q + E+ +P+T S AS L+ DK Sbjct: 65 GVRIGTLAEALDRARAEDRILVLGLHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + +K+ GV + + ++ + KP+K GSS G+I + Q + Sbjct: 125 VAAKRFAVLGGVTAAEGVAL--DNAETALARYGKLIAKPVKDGSSFGLIFVNAKQDLVAV 182 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209 +++ ++ LIE +V G E TCGV+ A + +P ++Y KY + Sbjct: 183 KAAAAT----EEYLIEPFVTGKEATCGVLEQADGSLIALPPIEILPADGAFNYFAKYLAA 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + P + ++ +QR A AH+A+ C G SR+DF+ V+ LE N PG+T Sbjct: 239 ATKEICPGRFNPEVTAALQREAIKAHRALSCGGYSRTDFIVSA-DGPVY-LETNTLPGLT 296 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ A G F + L + A Sbjct: 297 AASLYPKALAAQGIPFADFLQQQIALA 323 >gi|150390714|ref|YP_001320763.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|149950576|gb|ABR49104.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 339 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 18/292 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77 + L +I VD + L D+ FN+ G + A+LE+L I Sbjct: 33 EQIFRIL-SKKHNTVKIQVDEKISENLVKSDVDIVFNLSTGVRGESRQSQIPALLEMLGI 91 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PY SGILA +L+++K +K++ GVP + + P + KP GS Sbjct: 92 PYVGSGILAHSLALNKAMAKKIFQYHGVPTPAFQVFQTGEEKLDSNLKFPLIAKPACEGS 151 Query: 138 SLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 GI V + + S + +L+E++++G E T GV+G+ + Sbjct: 152 GFGIHVDSVVYDEQGLMKKVSELLRQYEPPVLVEEFIEGREFTVGVIGNGESKRILPIME 211 Query: 196 KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 E + PA I + + K + A +GC+ I+R Sbjct: 212 IDFEDIPEEHGKFYTFEVKNNFGDQTKYHCPASISMALEKSIMENVSKAFDVLGCKDIAR 271 Query: 246 SDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D L + + + LEIN PG+ S P+MA AG S++EL++ ++E A Sbjct: 272 VDVLV--KNERPYILEINSLPGLKHLHSDLPKMAVVAGLSYKELIMEILEVA 321 >gi|39936587|ref|NP_948863.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris CGA009] gi|39650443|emb|CAE28966.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris CGA009] Length = 329 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 35/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51 +L GG S ER VS++S +A SAL DA D DR S +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHSALPDADLWFWN-DDDRVHAVSAQALLAHARPFEEAFVP 63 Query: 52 ------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 D A LHG E+G +QA+ EL +P+T SG AS L+ D Sbjct: 64 DGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFD 123 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+ +K+ + GV I + ++ + KP GSS G+ I Q + Sbjct: 124 KVAAKRFAAIAGVRTVTGIAL--ADAEAALEAHGRLIAKPACDGSSYGLFFINAKQDLVA 181 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + ++ + + + G VP + Y KY + ++ Sbjct: 182 VRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEIVPADGGFDYTAKYLAKSTQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + P + +I + A AH+ + CRG SRSDF+ +LE N PG+T S Sbjct: 242 EICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLTKAS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++P+ G F + L + A Sbjct: 300 LYPKALNALGIPFVDFLRGQIALA 323 >gi|316933192|ref|YP_004108174.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1] gi|315600906|gb|ADU43441.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1] Length = 329 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 133/324 (41%), Gaps = 35/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51 +L GG S ER VS++S +A AL DA D DR + +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALQRALPDADLWFWN-DDDRVHCVTAQTLLAHARPFEEPFAP 63 Query: 52 --------DLAFN-----------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 D+A + LHG E+G +QA+ EL +P+T SG AS L+ D Sbjct: 64 DGEMVGPLDIALDRAAAEHRLLVLGLHGGVAENGELQAMCELRRVPFTGSGAAASHLAFD 123 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K +K+ + GV I + + + KP + GSS G+ I Q + Sbjct: 124 KAAAKRFAAIAGVRTSVGIALADAEAALET--HGRLIAKPTRDGSSYGLFFINARQDLVA 181 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + ++ + + + G VP + Y KY + ++ Sbjct: 182 VREAAKTEDYLIEPFVAGVEATCGVLEAEDGSLLALPPIEIVPADGGFDYTAKYLAKSTQ 241 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + P + ++ + A AH+ + CRG SRSDF+ +LE N PG+T S Sbjct: 242 EICPGRFAPEVAAMIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLTGAS 299 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++P+ G F + L + A Sbjct: 300 LYPKALKAQGIDFVDFLKGQIALA 323 >gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411] Length = 373 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ F VLHG GEDG VQ +L+L + Y +G+LASA MDK +K++ G+PV Sbjct: 118 QVDVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGE 177 Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 +++ + + + P +KP +GGSS+GI + + + + ++ +++ Sbjct: 178 ELILFQPRELTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAF--SNDNKV 235 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVLPAK 218 ++E + G E+ CGV+ A + + FY ++ KY + +PA Sbjct: 236 IVEAMIHGAEVECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAP 295 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P + KE+++LA A+GC GI+R DF EIN PG TP+S++P+M Sbjct: 296 LPAETIKEIRQLAIRTFNALGCDGIARVDFFATE--NGPVLNEINTMPGFTPISMYPKMF 353 Query: 279 AYAGYSFRELLLWMVEDA 296 A G SF +L+ ++ A Sbjct: 354 AAEGVSFGDLVSALIARA 371 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 +AVL GG S+E VS S A L+ ++V + + + V Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWV 57 >gi|257792714|ref|YP_003183320.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243] gi|325831132|ref|ZP_08164456.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] gi|257476611|gb|ACV56931.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243] gi|325487053|gb|EGC89499.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1] Length = 328 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL+S K +ALE+AG + +D + L +PD+ FN LHG Sbjct: 3 VAVLTGGSSTERELSLASAKNVCAALEEAGHRTVLLDASSDLVSALRVERPDVCFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK--------------------MRSKQVV 100 GEDG VQ++LE + +P+ S + DK + V Sbjct: 63 KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + ++ + + P +KP G S+ G+ + + + S + Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAV--SDAL 180 Query: 161 NHGDQLLIEQYVDGIELTCGV------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + D ++IEQ++DG+E+T V D + + V Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240 Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 PA + D I E++R A +A R ++R D ++D + LE++V P + Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQAR--VLEVDVSPSL 298 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 S F +G S +L +V Sbjct: 299 AESSPFSLACEASGLSLSGVLNELV 323 >gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bifidobacterium longum DJO10A] gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A] gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A] Length = 395 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGVGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|92116839|ref|YP_576568.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14] gi|91799733|gb|ABE62108.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14] Length = 340 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 131/326 (40%), Gaps = 36/326 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP--DL 53 + +L GG + ER VS++S +A AL +A + D+ V V L H +P D Sbjct: 3 ITILFGGSNKERLVSVASAQALHRALPEA--DLWFWDIRDDVHNVRSEVLLDHARPFEDE 60 Query: 54 AFNV-----------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 LHG E+G +QA+ EL IP+T SG AS L+ Sbjct: 61 FVPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLA 120 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 DK+ +K+ + GV + + +D + KP + GSS G+I + Q Sbjct: 121 FDKVAAKRFAALAGVTTPAGVPL--EEIDRAFAEHGRLIAKPARDGSSYGLIFVNAKQDF 178 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + + + G VP + Y KY + Sbjct: 179 VAVRHAAKTEEYVIEPFVSGIEATCGVLERSDGTVVALPPVEIVPAEGRFDYASKYLAQT 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + I + A AH+A+ CRG SR+DF+ + +LE N PG+T Sbjct: 239 TQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIVTGK--EPVYLETNTLPGLTA 296 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ G F + L + A Sbjct: 297 ASLYPKALKAQGIGFADFLRDQIVLA 322 >gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 397 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 25/280 (8%) Query: 39 DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D + VL L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K Sbjct: 115 DPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174 Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149 V+++ G+P P I+V+ + + ++ P +KP + GSS G+ + K + Sbjct: 175 VVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAED 234 Query: 150 IPL-----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + +++ H ++LIEQ +DG E+ C V+ + D E + P ++ Sbjct: 235 LETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294 Query: 205 KYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G + EL+ ++E Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 22/51 (43%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S +A++ F+ + + + ++ P Sbjct: 8 IVVLYGGRADEHSISCISTAGVLAAMDTERFEPIPVGITKDGKWIIDGEDP 58 >gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734] Length = 373 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 + D+ F VLHG GEDG VQ +L+L + Y +G+LASA MDK +K++ G+PV Sbjct: 118 QVDVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGE 177 Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 +++ + + + P +KP +GGSS+GI + + + + +H +++ Sbjct: 178 ELILLQPRELTAEEKARLGLPVFVKPARGGSSIGISKVDSWEEFDAAVDLAF--SHDNKV 235 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVLPAK 218 ++E + G E+ CGV+ A + + FY ++ KY + +PA Sbjct: 236 IVEAMIHGAEVECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAP 295 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P + KE+++LA A+GC GI+R DF EIN PG TP+S++P+M Sbjct: 296 LPAETLKEIRQLAIRTFNALGCDGIARVDFFATE--NGPVLNEINTMPGFTPISMYPKMF 353 Query: 279 AYAGYSFRELLLWMVEDA 296 A G SF +L+ ++ A Sbjct: 354 AADGVSFGDLVSALIARA 371 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 +AVL GG S+E VS S A L+ ++V + + + V Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWV 57 >gi|146292900|ref|YP_001183324.1| D-alanyl-alanine synthetase A [Shewanella putrefaciens CN-32] gi|189083054|sp|A4Y6E2|DDL_SHEPC RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|145564590|gb|ABP75525.1| D-alanine--D-alanine ligase [Shewanella putrefaciens CN-32] Length = 337 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S S+L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + IK GSS+G + S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210 + ++ + +++E+ + EL V V + + + Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331 >gi|319426570|gb|ADV54644.1| D-alanine/D-alanine ligase [Shewanella putrefaciens 200] Length = 337 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S S+L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + IK GSS+G + S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALADWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210 + ++ + +++E+ + EL V V + + + Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331 >gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis 157F] Length = 395 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 397 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 129 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 188 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 189 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 248 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 249 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 308 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 309 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 367 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 368 TPISMYPKAWDATGVSYTELITRLIE 393 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 8 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 58 >gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705] gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705] Length = 428 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 160 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 219 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 220 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 279 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 280 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 339 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 340 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 398 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 399 TPISMYPKAWDATGVSYTELITRLIE 424 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 39 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 89 >gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 395 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|24373771|ref|NP_717814.1| D-alanyl-alanine synthetase A [Shewanella oneidensis MR-1] gi|39930896|sp|Q8EEZ2|DDL_SHEON RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|24348157|gb|AAN55258.1|AE015664_1 D-alanine--D-alanine ligase [Shewanella oneidensis MR-1] Length = 336 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 33/325 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + F V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150 S+ G+P P I +N++ + +K GSS+G + + + Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVGCYKVDEASKVLGVL 187 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + G + + + SS Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKA 247 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ +P DI +++ A A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQNVPTDISDQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295 +S+FP+M G+ F + L ++ Sbjct: 307 ISMFPKMLQNHGHDFTQYLSLVINS 331 >gi|114047700|ref|YP_738250.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-7] gi|123326497|sp|Q0HUL2|DDL_SHESR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|113889142|gb|ABI43193.1| D-alanine--D-alanine ligase [Shewanella sp. MR-7] Length = 336 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 33/324 (10%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49 +L GG S+E ++SL S ++L + V ++ +D+ A Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQVNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67 Query: 50 ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150 S+ G+P P I +N++ + +K GSS+G + + Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVAGVL 187 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + G + + + SS Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKA 247 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 T V+ +P DI +++ A A + + R +SR DF ++ EIN PG TP Sbjct: 248 RTDVVAQNVPADISDQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGSTP 306 Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294 +S+FP+M G+ F E L +++ Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIK 330 >gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 395 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 25/281 (8%) Query: 38 VDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 D + L L D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK + Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171 Query: 97 KQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV----- 143 K V+ + G+P P + V+ + ++ + P IKP + GSS G+ Sbjct: 172 KVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKAD 231 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++ Q L +++ H ++L+EQ +DG E+ C V+ + D E + P ++ Sbjct: 232 DRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQ 291 Query: 204 LKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 + +PA +P+ + ++V+ +A A +A+ G+SR D P Sbjct: 292 NDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP- 350 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 V EIN PG TP+S++P+ G S+ EL+ ++E Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|120599029|ref|YP_963603.1| D-alanyl-alanine synthetase A [Shewanella sp. W3-18-1] gi|189083057|sp|A1RK54|DDL_SHESW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|120559122|gb|ABM25049.1| D-alanine--D-alanine ligase [Shewanella sp. W3-18-1] Length = 337 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 134/327 (40%), Gaps = 37/327 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43 +L GG S+E ++SL S S+L + F V ++++D+ + Sbjct: 8 LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDECELTNNREIR 67 Query: 44 LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I ++++ + IK GSS+G + S + Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210 + ++ + +++E+ + EL V V + + + Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245 Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 T V+ + +++ ++++ A A + + R +SR DF ++ EIN PG Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295 TP+S+FP+M G+ F E L ++ + Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINN 331 >gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum JDM301] Length = 395 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P IKP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata] Length = 385 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 16/259 (6%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+ F +LHG FGEDG VQ +LE+ +PY SG+ ASA +MDK K ++++ G+ + P Sbjct: 123 DVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPYT 182 Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++ D + + P +KP +GGSS+GI + + L + + ++L+ Sbjct: 183 VLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARAV--DPKVLV 240 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELKYSSLNSTHVLPAK 218 E V G E+ CGV+G E ++P FY +E KY S + +PA Sbjct: 241 EAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPAN 300 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 +P ++ V+++A A A+ C G++R D P V E+N PG TP S+FP M Sbjct: 301 LPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRMW 359 Query: 279 AYAGYSFRELLLWMVEDAS 297 A G + L+ +V A+ Sbjct: 360 AATGLDYPRLVDRLVALAT 378 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53 +AVL GG S+E +S S + AL+ + V + + VL PD Sbjct: 11 IAVLYGGRSTEHAISCVSAGSVLRALDRRRYDVVAVGITPDGRWVLGPDDPDA 63 >gi|192292409|ref|YP_001993014.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1] gi|192286158|gb|ACF02539.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1] Length = 329 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 132/327 (40%), Gaps = 41/327 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK-------VSQIDVDRSVGLVLAHLKP---- 51 +L GG S ER VS++S +A SAL DA V + S +LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHSALPDADLWFWNDDDCVHAV----SAQALLAHARPFEEA 60 Query: 52 ---------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 D A LHG E+G +QA+ EL +P+T SG AS L Sbjct: 61 FVPDGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHL 120 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + DK+ +K+ S GV I + ++ + KP GSS G+ I Q Sbjct: 121 AFDKVAAKRFASIAGVRTVTGIAL--ADAEAALEAHGRLIAKPACDGSSYGLFFINAKQD 178 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + + ++ + + + G VP + Y KY + Sbjct: 179 LVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEIVPADGGFDYTAKYLAK 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + +I + A AH+ + CRG SRSDF+ +LE N PG+T Sbjct: 239 STQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLT 296 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ G F + L + A Sbjct: 297 KASLYPKALNALGIPFVDFLRGQIALA 323 >gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064] Length = 318 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 13/256 (5%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----- 107 + F +LHG GEDG VQ + E+L IPY +G+LAS+ +MDK+ K++ + G+P Sbjct: 48 VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 107 Query: 108 ----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + +++ P +KP GSS+GI + + + ++ ++ Sbjct: 108 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELADAMTEAFLYDRR 167 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIP 220 + IE+ V +P+ + FY Y+ KY N+ ++P ++ Sbjct: 168 VVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVD 227 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 +I ++++ A A + G+ R+DF ++F E+N PG TP S++P + Sbjct: 228 PEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQE 286 Query: 281 AGYSFRELLLWMVEDA 296 G + L+ +V+ A Sbjct: 287 TGLPYGALIERLVDLA 302 >gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae FF5] Length = 264 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + F ++HG FGEDG +Q +L +L +P+ + +L+SA+ MDK +K+++ G+ V P + Sbjct: 1 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60 Query: 113 VNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 ++R ++ + P IKP GSS+G V K + + +LLI Sbjct: 61 LSRGESLSFTEAADQLGLPMFIKPANQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLI 118 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYK 225 EQ + G E+ C V+G+ + V+ ++ Y + +PA++P D+ Sbjct: 119 EQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 178 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 +V+ +A A++ +GC G+SR DF R + E+N PG T +S++P++ +G S+ Sbjct: 179 QVREVALQAYKVLGCAGLSRVDFFVTE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSY 237 Query: 286 RELLLWMVEDA 296 EL+ ++ A Sbjct: 238 AELIHRLIVLA 248 >gi|86749124|ref|YP_485620.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2] gi|86572152|gb|ABD06709.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 329 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 137/325 (42%), Gaps = 37/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP------ 51 +L GG S ER VS++S +A +AL DA ++ + D SV V LAH +P Sbjct: 5 ILFGGTSKERLVSVASAQALHAALPDA--ELWFWNDDDSVHAVTAEALLAHARPFEEAFR 62 Query: 52 -------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 D A LHG E+G +QA+ E+ +P+T SG AS L+ Sbjct: 63 PAGENIGPLERALDRAAIEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHLAF 122 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 DK+ +K+ + GV I + ++ + KP + GSS G+ I Q + Sbjct: 123 DKVAAKRFAAIAGVRAPAGIAL--AEAEAALAAHGRLIAKPARDGSSYGLFFINAKQDLV 180 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + S ++ + + + G VP + Y KY + ++ Sbjct: 181 AVRDAARSEDYLIEPFVSGIEATCGVLEQADGSLLALPPIEIVPADGGFDYTAKYLAKST 240 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P + I + A AH+ +GCRG SRSDF+ +LE N PG+T Sbjct: 241 QEICPGRFAPQISARIMEDAVKAHRVMGCRGYSRSDFIVVADG--PIFLETNTLPGLTKA 298 Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ G +F + L + A Sbjct: 299 SLYPKALQAQGIAFVDFLHGQIALA 323 >gi|158522759|ref|YP_001530629.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] gi|158511585|gb|ABW68552.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3] Length = 338 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 126/299 (42%), Gaps = 23/299 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG--NFGEDGLVQAILELL 75 A + L + GF V I+ D + L + DL FN G V A+LE+L Sbjct: 34 AAMTAHLRECGFDVIPIEADPDAYIKLYENRDSIDLVFNYSIGIYGQARYAQVPAMLEML 93 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +PYT SG L AL +DK R +QV+S+C VPV S + Q ++ P ++KP+ Sbjct: 94 RLPYTGSGPLTQALILDKARMQQVLSACNVPVLCSQVFETGDEPLQSGLAFPLIVKPVAQ 153 Query: 136 GSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI + Q G+ L++ ++DG E + +MG+ I Sbjct: 154 GSSAGITSDSVVRDEAALYRQVGRVMATFGEPALVQPFLDGREFSIPMMGNPPEIFPIIE 213 Query: 194 VPKSDFYSYELKY-----------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 S + + + + PA + + + +++ A +A+G Sbjct: 214 PDFSRLPEGYARIDSLEVKWIFEEQAESHHLICPAPVAPGLQERLEQTVRAAWKALGICD 273 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSFRELLLWMVEDA 296 R D D + +++N PGM P S FP A AG ++ LL ++E A Sbjct: 274 WCRIDLRCDMA-GTPYVIDVNSPPGMIPPEGSMTSYFPMSARAAGIDYQGLLKRLIETA 331 >gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 265 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 11/266 (4%) Query: 37 DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 DV + L D FNVL H GED +VQ + E +PYT S +L SALSMDK+ Sbjct: 2 DVIGQLSKPLVAQHFDRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKI 61 Query: 95 RSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 R+KQV S G+ + I P ++KP GSS+G+ + Sbjct: 62 RTKQVWLSLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQ 121 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ + LL+EQ ++G ELT V+GD +L VPK +Y Y KY + Sbjct: 122 LEEAVTLAA--RYDGALLMEQLIEGDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAE 178 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ ++ P + ++++LA A A GCRG R D + D S +++ LE+N PGMT Sbjct: 179 DTQYLCPGL-EGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMT 237 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295 S+ P+ A G F L+ ++E Sbjct: 238 SHSLVPKAARQLGIDFETLVWRVLEQ 263 >gi|229089127|ref|ZP_04220426.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] gi|228694192|gb|EEL47869.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44] Length = 228 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 5/195 (2%) Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + ++ P +KP GSS+GI K + + ++ Sbjct: 23 FIRSTWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKDREELDNAFEEAF--QFD 80 Query: 164 DQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 ++++E+ + G E+ GV + V VPK DFY Y+ KY ++ ++PA++ Sbjct: 81 RKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMTE 140 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + ++R A +A Q++ G++R+DF +V+ E+N PG TP S+FP + + Sbjct: 141 EESDVIKRDAIIAFQSLDSAGLTRADFFLT-KDGEVYINEVNTMPGFTPFSMFPLLWQHT 199 Query: 282 GYSFRELLLWMVEDA 296 + EL+ ++ A Sbjct: 200 NLPYPELIEELIRLA 214 >gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 56/329 (17%) Query: 23 ASALEDAGFKVSQIDVDRSVGL-------------VLAH--------------------- 48 L+ A + V I + + VL Sbjct: 1 MKHLDPAKYTVVPIGITKDGQWTPGTMEGLEIVDGVLPEVTMGDELALSLNPETKGRFHN 60 Query: 49 -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 + D+ VLHG +GEDG VQ + EL +IPY +G+LAS+ MDK +K++++ Sbjct: 61 VTQHSHFAEVDVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLT 120 Query: 102 SCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + G+PV P +++ T S + P +KP +GGSS+G+ + + + Sbjct: 121 AEGLPVAPEVILKGRTELSADEKAQLGLPVFVKPARGGSSIGVSKVTDWAEFSRAVEVAF 180 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLN 210 +++L+E + G E+ GV+ A V + + FY ++ KY Sbjct: 181 --ESDNKVLVEPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEG 238 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + +PA + D+ + ++ A A +A+GC G+SR DF + EIN PG TP Sbjct: 239 VSAQIPAPLDPDLIQTLRETAVSAFRALGCEGLSRVDFFVTK--DAFYINEINTFPGFTP 296 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +S++P++ A G + LL ++E A Sbjct: 297 ISMYPQVLAATGVDYAALLDALIEGAMAR 325 >gi|75675248|ref|YP_317669.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255] gi|74420118|gb|ABA04317.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255] Length = 330 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-----QIDVDRS-------------- 41 + +L GG + ER VS++S +A AL +A +DV Sbjct: 3 ITILFGGSNKERLVSVASAQALHHALPEADLWFWNLRDEIVDVRSETLRDHARPFEDEFV 62 Query: 42 -------VGLVLAHLKP-DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + L + D + LHG E+G +QA+ EL IP+T SG AS L+ D Sbjct: 63 PGGSGAPLERALDRARAEDRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+ +K+ V+S GVP +L+ +D V KP GSS G+I + Q I Sbjct: 123 KVAAKRFVASAGVPTPAHVLL--EDIDHALAEHGRLVAKPACDGSSYGLIFVNAPQDIVT 180 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + ++ + + + G VP + Y KY + + Sbjct: 181 VREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKYLAKTTQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + P + +I ++ + AH+A+ CRG SR+DF+ +LE N PG+T S Sbjct: 241 EICPGRFSPEIAAQIMDHSLRAHRALSCRGYSRTDFIVT--GNGPIYLETNTLPGLTAAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++P+ G F + L + A Sbjct: 299 LYPKALHAQGVGFADFLRDQIVLA 322 >gi|317489001|ref|ZP_07947528.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|316911868|gb|EFV33450.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA] Length = 328 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 36/325 (11%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ERE+SL+S K +ALE+AG + +D + L +PD+ FN LHG Sbjct: 3 VAVLTGGSSTERELSLASAKNVCAALEEAGHRKVLLDASSDLVSALRVERPDVCFNALHG 62 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK--------------------MRSKQVV 100 GEDG VQ++LE + +P+ S + DK + V Sbjct: 63 KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + ++ + + P +KP G S+ G+ + + + S + Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAV--SDAL 180 Query: 161 NHGDQLLIEQYVDGIELTCGV------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + D ++IEQ++DG+E+T V D + + V Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240 Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 PA + D I E++R A +A R ++R D ++D + LE++V P + Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQAR--VLEVDVSPSL 298 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 S F +G S +L +V Sbjct: 299 AESSPFSLACEASGLSLSGVLNELV 323 >gi|91793706|ref|YP_563357.1| D-alanyl-alanine synthetase A [Shewanella denitrificans OS217] gi|122968653|sp|Q12LP2|DDL_SHEDO RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|91715708|gb|ABE55634.1| D-alanine--D-alanine ligase [Shewanella denitrificans OS217] Length = 335 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 119/325 (36%), Gaps = 37/325 (11%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG--------------LVLA 47 +L GG +E ++SL S + ++L + F V + +D+ + Sbjct: 8 LLCGGGGAEHDISLMSARFFETSLAKSDQFSVLTLTLDKQGRYHTQDGNLCSLTNRREIR 67 Query: 48 HLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 P D +HG GE G +Q+ L+++PY AS+ +K+ +K Sbjct: 68 FEDPSIAPWAVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127 Query: 101 ------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 ++ + + + IK GSS+G + +I Sbjct: 128 SALGVPNTPYIFLHQFDQEAIAQTQAAFDTWGSVFIKAASQGSSVGCYKVDVRDNI--AK 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + ++ + +++E+ + EL V + + + + + Sbjct: 186 VLEEAFGYAPYVVVEKTIKARELEVAVYEYQGDIIATLPGEIICDTNKFYSFDEKYAKDS 245 Query: 215 LPAKI------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 + ++Q A A + + R +SR DF ++ EIN PG+ Sbjct: 246 KARTDVVASNLSPKLCLQIQDYAIKAFKGMKLRHLSRIDFFLT-QDDEILLNEINTFPGL 304 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293 TP+S+FP+M G+ F E L ++ Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSDVI 329 >gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703] Length = 301 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 14/268 (5%) Query: 38 VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 + LA L D+ F ++HG GEDG +Q +L + IP+ SG+L SA+SMDK +K Sbjct: 23 IATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITK 80 Query: 98 QVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 +++ G+ + P I N + P IKP GSS+G+ ++ Sbjct: 81 RLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYE 140 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + + + ++L+E + G E+ C VMG+ + + Y +N Sbjct: 141 QAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASLCGEVVISDEFYSYDTKYINE 198 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++PA I + ++ +A A +A+ CRG++R D P +V EIN PG Sbjct: 199 TGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDVFLTP-DNRVIINEINTLPGF 257 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296 T +S++P++ G EL+ ++E A Sbjct: 258 TNISMYPKLWRATGVGSTELITTLIELA 285 >gi|329848165|ref|ZP_08263193.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19] gi|328843228|gb|EGF92797.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19] Length = 329 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 131/323 (40%), Gaps = 33/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPDLAFNV- 57 +L GG S ER VS++S +A A AL DA ++V L +L F Sbjct: 5 ILFGGTSRERLVSVASAQALAHALPDADLWFWDHDGTVNVTSPAALHAHDRPFELPFRAD 64 Query: 58 ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 LHG E+G Q + E +P+T SG AS L+ DK Sbjct: 65 GILIGDMAGSLDLAVHENRVLVLGLHGGSAENGEFQVLAEARGVPFTGSGSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 +K+ GV S+ +D + KP + GSS G+I + Q + Sbjct: 125 TAAKRFAGLAGVHSPSSVS--LDELDEAFSHYGKLIAKPAQDGSSFGLIYVNSSQDLAAV 182 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ + + + + + G VP + Y+ KY + + Sbjct: 183 RREAKTTAYVIEPFVTGPEATCGVLEQADGSLIALPPVEIVPAEGTFDYKSKYLAAATQE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+ +I +++ L+ AH+A+ CRG SRSDF+ +LE N PG+T S+ Sbjct: 243 ICPARFASEIMAQLRDLSIKAHKAMSCRGYSRSDFII--SDHGPVYLETNTLPGLTKASL 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+ G F + L +E A Sbjct: 301 YPKSLKAQGIEFVDFLNGQIELA 323 >gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 395 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D VLHG +GEDG VQ +LE++ +PY G+ ASA MDK +K V+ + G+P P + Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186 Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158 V+ + ++ + P +KP + GSS G+ ++ Q L ++ Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211 + H ++L+EQ +DG E+ C V+ + D E + P ++ + Sbjct: 247 AGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306 Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +PA +P+ + ++V+ +A A +A+ G+SR D P V EIN PG Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294 TP+S++P+ G S+ EL+ ++E Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 21/51 (41%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51 + VL GG + E +S S A++ F+ + + + ++ P Sbjct: 6 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >gi|322705322|gb|EFY96909.1| hypothetical protein MAA_07722 [Metarhizium anisopliae ARSEF 23] Length = 361 Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 113/308 (36%), Gaps = 31/308 (10%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDG--LVQAILEL 74 KA A+AL+ G V+ + S+ LA H DL FN+ G G V A+LE Sbjct: 41 KAVAAALQGLGHDVTLVPGVSSLVEHLAAGQHKNWDLVFNMAQGFHGPARESHVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVI 130 IPYT S AL +K +K ++ GVP P +++ + P + Sbjct: 101 FLIPYTFSDAATMALCQNKANTKIILEHHGVPNAPFMVIPSEHLSLLNHATLPPKYPLFV 160 Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 KP GSS + + L + + + G +L+E ++ G E T ++G S Sbjct: 161 KPATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSC 220 Query: 188 DVTEIAVPKSDF------YSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLA 231 Y+ + + K ++A Sbjct: 221 SRVIGIREHIWQTFPENGNGYQATQEFACWKSKLSEGCLLRYNDAHDMDDAHVKAACQVA 280 Query: 232 FLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288 A+GCR R D F D + LE+N G+ P S P A G SF L Sbjct: 281 LDTWTALGCRDAGRVDIRFSSDDANGVPNVLEVNPIAGLLPGHSPLPASAEENGLSFEAL 340 Query: 289 LLWMVEDA 296 L ++E A Sbjct: 341 LTAILESA 348 >gi|212635560|ref|YP_002312085.1| D-alanyl-alanine synthetase A [Shewanella piezotolerans WP3] gi|226729272|sp|B8CMV8|DDL_SHEPW RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|212557044|gb|ACJ29498.1| D-alanine--D-alanine ligase [Shewanella piezotolerans WP3] Length = 332 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 126/324 (38%), Gaps = 37/324 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVD---------------------R 40 +L GG E +SL S ++L F V ++++D R Sbjct: 8 LLCGGGGDEHAISLLSANYFETSLATLPQFNVLRVELDVNGHYRTAAGESCELNSRRQIR 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 A + D A +HG GE G +Q+ EL+ +PY AS +K+ +K Sbjct: 68 FDADNRAPWEVDFAIPCIHGFPGETGDIQSYFELINLPYFGCKAEASRNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ +P P + +N + + +K GSS+G I + + Sbjct: 128 SALNIPNTPYLFLNEMSDVSIEQATNALVNWGSIFVKAASQGSSVGCYRIDNQEDV--AS 185 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + ++ + D +++E+ + EL V V + + + + + Sbjct: 186 TLAQAFTYSDYVIVEKTISARELEVAVYEIDGEIVATVPGEVICSSNNFYTFDEKYAANS 245 Query: 215 LPAKI-----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ +++ A A + + R +SR DF +V EIN PG+T Sbjct: 246 KAQTQVVADISKEVSDLIRQYAISAFKGMKLRHLSRIDFFLT-DDGEVLLNEINTFPGLT 304 Query: 270 PVSIFPEMAAYAGYSFRE-LLLWM 292 P+S+FP+M G+SF + LL + Sbjct: 305 PISMFPKMLQNHGHSFPDYLLSNI 328 >gi|8671343|emb|CAB95026.1| D-alanine-D-alanine ligase [Prochlorococcus marinus] Length = 247 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 4/204 (1%) Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + + ++ + + P IKP GSS+GI + + L Sbjct: 46 PQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGL 105 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNST 212 ++ ++++E+ + EL C V+G + + SD+Y Y+ KYS ++ Sbjct: 106 DLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSKNSTK 163 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 ++PA IP I KEVQ L+ LA +AI GI+R DF +D ++ EIN PG T S Sbjct: 164 TLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQS 223 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++P + +G +L+ ++E A Sbjct: 224 MYPMLWDASGIDISQLVARLIESA 247 >gi|157363697|ref|YP_001470464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] gi|157314301|gb|ABV33400.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 334 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 117/288 (40%), Gaps = 14/288 (4%) Query: 22 CASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIP 78 ++E G +V ++ V L K D+ +N G + V AIL IP Sbjct: 31 IKKSIESGGHEVVLMEAVPEKFIPALTSEKVDIVYNFAEGTYSRAREAQVPAILSFYNIP 90 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 YT S A+ +DK +KQ++ + + ++ + + P ++K GSS Sbjct: 91 YTGSDATTLAVCLDKALTKQILLTKDIKTPRFQVIRSPQEKLRKNMRFPLILKLNAEGSS 150 Query: 139 L---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASLDV 189 ++ ++ + S + + +L+E+++ G E T + Sbjct: 151 KGISETGLVHNYDEYKKEIDRLFSI-YSEPVLVEEFIRGREFTIGVLQEGNKYYVLPIME 209 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 K + K S + PAKI L + ++++ +A + + + ++R D Sbjct: 210 IHFKHGKEFYSYKVKKNSDYYVDYTCPAKIDLMLERKLKNMAVKICKTLEIKDVARMDLR 269 Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 ++LEIN PGM S P +A A ++ EL+L ++E+A Sbjct: 270 VSQEDNNPYFLEINPLPGMARGFSDLPRIAEVADLTYEELILHVLENA 317 >gi|270307989|ref|YP_003330047.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS] gi|270153881|gb|ACZ61719.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS] Length = 338 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 145/312 (46%), Gaps = 21/312 (6%) Query: 4 LMGGIS---SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + GG E + S + +A +AL+ AG V ++ + + K DL FN+ G Sbjct: 16 VAGGPDDALEEYD-SPETVEAITTALKAAGHTVYRLGGGKEFLRRVQEQKLDLVFNISEG 74 Query: 61 ---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVN 114 + + +ILE+L+IPYT S A+ +DK +K++V+S G+ Sbjct: 75 LGNYRSREAQIPSILEMLDIPYTGSDPQTLAICLDKPLTKKLVASAGIKTARWQLVNNCE 134 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYV 172 + P +KP GSS G+ + +SI + ++ + +LIE+++ Sbjct: 135 ELSAIDWSGFPLPAFLKPACEGSSKGVRFASRAESIDEIMSMAADLLTTYEQPVLIEEFI 194 Query: 173 DGIELTCGVMGDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYK 225 +G E+T GV+G+ S +V VPK+ + + + +PA +P + Sbjct: 195 NGEEITVGVIGNTSPEVLGIMRVVPKTKTDYFVYSIEVKRNWRQMVEYEVPAALPGETLA 254 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYS 284 +++ A++ + CR + R DF P ++LE+N PG+ PVS P MA+ G S Sbjct: 255 RIEKATLDAYKVLECRDLCRMDFRISP-DGVPYFLEVNPLPGLNPVSGDLPIMASKLGIS 313 Query: 285 FRELLLWMVEDA 296 EL+L ++ A Sbjct: 314 HAELVLKILNTA 325 >gi|57234544|ref|YP_181371.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195] gi|57224992|gb|AAW40049.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195] Length = 338 Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 18/305 (5%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67 E + S + +A +AL AG V ++ + + K DL FN+ G + Sbjct: 26 EYD-SPETVEAITNALTQAGHTVYRLGGGKEFLRRVQEQKLDLVFNIAEGLGNYRSREAQ 84 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124 + ILE+L+IPYT S A+ +DK +K++V+ G+ + Sbjct: 85 IPGILEMLDIPYTGSDPQTLAVCLDKPLTKKLVADAGIKTARWQLVTSCEELSAIDWSGF 144 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS G+ + S + ++ + +LIE+++ G E+T GV+ Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAGSAKEIVSMAAELLTAYEQPVLIEEFISGEEITVGVI 204 Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G+ V VPK+ + + + +PA +P + +++ A+ Sbjct: 205 GNIQPKVLGIMRVVPKTKTDYFVYSVEVKRNWRQMVEYEVPAALPAETLSRIEKATLDAY 264 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294 + +GCR + R DF P ++LE+N PG+ PVS P MA+ G S EL+L +++ Sbjct: 265 KVLGCRDLCRMDFRVSP-DGIPYFLEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILD 323 Query: 295 DASCL 299 A Sbjct: 324 TALAR 328 >gi|119775038|ref|YP_927778.1| D-alanyl-alanine synthetase A [Shewanella amazonensis SB2B] gi|189083048|sp|A1S6V2|DDL_SHEAM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|119767538|gb|ABM00109.1| D-alanine--D-alanine ligase [Shewanella amazonensis SB2B] Length = 336 Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 41/328 (12%) Query: 2 AVLMGGISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP------- 51 +L GG SE ++SL S K +C + L F +++ + Sbjct: 7 VLLCGGGGSEHDISLLSAKYFESCLATLPR--FNTLWLELTAEGQFRTREGEIVELTNRR 64 Query: 52 --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97 D +HG GE G +Q+ L+ +PY G AS+ +K+ +K Sbjct: 65 EIRFADEAKAPWSVDYVIPCIHGYPGETGDIQSWFNLIRLPYFGCGSEASSNCFNKITAK 124 Query: 98 QVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 S+ G+P P + +++ IK GSS+G + + IP Sbjct: 125 MWFSALGIPNTPYLYLDEPSNDAIARVEAAFDEWGSVFIKAASQGSSVGCFPAHRREDIP 184 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELK 205 + ++ + +++E+ + EL V A + + Sbjct: 185 GLVRKAF--EYAPFVVVEKTIKARELEVAVYDYQGEIVATRPGEIVCAANTFYSFEEKYD 242 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S THV + + ++ A A + + R +SR DF ++ EIN Sbjct: 243 TKSQAVTHVEAPDVDEETVAAIRDYALRAFKGMKLRHLSRIDFFLTE-DNQILLNEINTF 301 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 PG+T +S+FP+M A+ G+ F L + Sbjct: 302 PGLTQISMFPKMLAHHGHDFATFLEQAI 329 >gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii ATCC 33806] Length = 325 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 145/327 (44%), Gaps = 57/327 (17%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------------- 51 S L+ +++ I + + + P Sbjct: 1 MSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGAMPTVTLTKEVSLAADPARRGQF 60 Query: 52 -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D+ F VLHG +GEDG +Q + EL +PY +G+L+SA MDK +K+++ Sbjct: 61 RFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLL 120 Query: 101 SSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 ++ G+PV +++ T L+ P +KP +GGSS+GI + + + + L ++ Sbjct: 121 AAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCEA 180 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSL 209 + ++++E + G E+ CGV+ V FY ++ KY Sbjct: 181 R--QYDTKVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDG 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + ++PA + + +Q LA A QA+ C G++R DF E+N PG T Sbjct: 239 DVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVDFFVTQAG--PVLNEVNTMPGFT 296 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 P+S++P++ A +G + ELL ++ A Sbjct: 297 PISMYPQVFAASGVPYAELLDTLIARA 323 >gi|326693128|ref|ZP_08230133.1| D-alanyl-alanine synthetase A [Leuconostoc argentinum KCTC 3773] Length = 377 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 54/345 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49 +A+L GG SSE +VS S + A+E +G + ++ + ++ + L Sbjct: 6 VALLFGGNSSEHDVSKRSAQNYYQAIEASGKYDITVFAIAQNGYFLDPESSKRVLALEDE 65 Query: 50 KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 +P D+ F V+HGN GEDG +Q + LL P+ + Sbjct: 66 QPIVDAFMAKVDTTDPLARISALREAGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 125 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136 + A+S DK +K++++ + ++ + +K G Sbjct: 126 PLRGHAVSFDKAMTKELLTVNNIRNTNYVVLDEKTAKDWTWDKVVATFGDVVFVKAANQG 185 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189 SS+GI + L S +++ L+ + EL GV+G+ Sbjct: 186 SSVGISRATTAEEFAAALADSFQYDY-KVLVEQAVKGPRELEVGVIGNDEPLVSEIGAHA 244 Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 +Y Y K+ + +PAK+P I +EV+ +A A++ + RG +R DF Sbjct: 245 VPNQGDGDGWYDYNNKFVDNSAVEFEIPAKLPDAITQEVKDMALKAYKVLNLRGEARMDF 304 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 L D + + E N PG T +S+F + Y+ L+ M+ Sbjct: 305 LLDE-NDVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVALVEKMI 348 >gi|302672145|ref|YP_003832105.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316] gi|302396618|gb|ADL35523.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316] Length = 401 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 130/367 (35%), Gaps = 76/367 (20%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49 AVL GG S+E E+S+ S + + V + + ++ + Sbjct: 6 AVLFGGKSTEHEISIISAIQAIGHINRDKYDVIPVYITKNNDFYVGEDVDKIEEYTHIPE 65 Query: 50 ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76 + D+AF ++HG EDG +Q L L Sbjct: 66 LIKKSTQVIWVKEGDKVSLMRYPMKKFGNNVISQVDIAFPIVHGTNVEDGTLQGYLATLG 125 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPY 128 +P +L+SA+ M+K K V+ G+PV + P Sbjct: 126 LPVVGCDVLSSAVGMNKYVMKTVLKDNGIPVLDCKCYTWKDYEDVNALVEKIEAAFEYPV 185 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCG 180 +IKPL GSS+GI ++ L ++ D I V G Sbjct: 186 IIKPLNLGSSIGIKKASDRDALIEALDLGFEFSKKILVEPAISDLKEINCSVIGDYENAK 245 Query: 181 VMGDASLDVTEIAVPKSDFYSYELK-----------YSSLNSTHVLPAKIPLDIYKEVQR 229 ++ + D Y K + +PA+I + +E++ Sbjct: 246 ASECEEPVNSDDILSFEDKYIGGAKGSAKGAKTGGSKGMASLKRKIPAEITPERREEIRT 305 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 +A A + +GC GISR DF+ D + KV+ EIN PG S+ + G + +LL Sbjct: 306 MAVDAFKCLGCSGISRIDFMIDKKTDKVYLNEINTIPG----SLSFYLWEPLGLKYTDLL 361 Query: 290 LWMVEDA 296 ++E A Sbjct: 362 DEIIELA 368 >gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 275 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 8/250 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+EREVSL+SG+ L DAG D L AFN LHG Sbjct: 12 VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 +GE+G +Q L+ I YT SG+L SAL +DK R+K V GVP P V R + Sbjct: 72 GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131 Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P +KP GSS+ ++ +K ++P L S + H +++E+ ++G Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + VP +FY Y KY + ++ +++P +P E++R+A A Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARRA 249 Query: 235 HQAIGCRGIS 244 +GC Sbjct: 250 FDVLGCTDWG 259 >gi|163750869|ref|ZP_02158103.1| D-alanylalanine synthetase [Shewanella benthica KT99] gi|161329427|gb|EDQ00422.1| D-alanylalanine synthetase [Shewanella benthica KT99] Length = 336 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 117/318 (36%), Gaps = 36/318 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40 ++ GG E +SL S K ++L V ++++D R Sbjct: 8 LICGGGGDEHAISLMSAKFFETSLAKLAHINVLKVELDAQGHYRTSDGELCELTNRKQIR 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 A D +HG GE G +Q+ EL+ +PY AS +K+ +K Sbjct: 68 FDDDNKACWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKITAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N F IK GSS+G + + + L Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSQEELTEYL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 Q+ + +++E+ ++ EL V + + + + + Sbjct: 188 QQAF--TYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICATNTFYSFDEKYAENS 245 Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + ++ A + + +SR DF + ++ EIN PG+T Sbjct: 246 QAETKVVADISESVSLRIREYAVKVFKGMKLSHLSRIDFFLTE-NNEILLNEINTFPGLT 304 Query: 270 PVSIFPEMAAYAGYSFRE 287 P+S+FP+M + G F + Sbjct: 305 PISMFPKMLQHHGDDFSD 322 >gi|85714979|ref|ZP_01045964.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A] gi|85698176|gb|EAQ36048.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A] Length = 329 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 32/324 (9%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDVDRS-------------- 41 + +L GG + ER VS++S +A AL +A + IDV Sbjct: 3 ITILFGGSNKERLVSVASAQALHHALPEADLWFWNHRDEVIDVRPEALRNHARPFEDEFV 62 Query: 42 -------VGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + L K + + LHG E+G +QA+ EL IP+T SG AS L+ D Sbjct: 63 PAGEGAPLERALDKAKAEGRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+ +K+ V+S GVP I + +D V KP GSS G+I + Q I Sbjct: 123 KVAAKRFVASAGVPTPAHIPLQS--IDRALAEHGRLVAKPACDGSSYGLIFVDAPQDIVT 180 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + ++ + + + G VP + Y KY + + Sbjct: 181 VREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKYLAKTTQ 240 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + P + +I +++ + AH A+ CRG SR+DF+ +LE N PG+T S Sbjct: 241 EICPGRFSPEIAEQIMDYSLRAHLALSCRGYSRTDFIVTGKG--PIYLETNTLPGLTAAS 298 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 ++P+ F + L + A Sbjct: 299 LYPKALHAQNIGFADFLRDQIMLA 322 >gi|58698111|ref|ZP_00373034.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535357|gb|EAL59433.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 213 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + ++ + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + I PYV+KP+ GSS+G+ +I + Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHED 156 >gi|148257414|ref|YP_001241999.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] gi|146409587|gb|ABQ38093.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1] Length = 329 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 143/327 (43%), Gaps = 41/327 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDR-SVGLVLAHLKP-------- 51 +L GG + ER VS++S +A + L D+ + D V R S ++AH +P Sbjct: 5 ILFGGSNKERLVSVASAQALHATLPDSDLWFWEADDAVHRVSGKALVAHARPFEEPFTAD 64 Query: 52 -----------------DLAF-NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 D LHG E+G +Q + E+ +P+T S AS L+ DK Sbjct: 65 GPRIGTLADALDRAKAEDRVLVLALHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + +K+ GV V + + + KP+K GSS G+I + Q + Sbjct: 125 VAAKRFAVLGGVTVAEGVSLADAEAALAQ--HGRLIAKPVKDGSSFGLIFVNAKQDLVA- 181 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209 + ++ LIE +V G E TCGV+ + +P ++Y KY + Sbjct: 182 ---VRAAAATEEYLIEPFVTGTEATCGVLEQPDGSLIALPPIEILPADGAFNYFAKYLAT 238 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + P + +I +Q A AH+A+ C G SRSDF+ +LE N PG+T Sbjct: 239 ATKEICPGRFTPEITAALQTEAIKAHRALSCGGYSRSDFIVSA--NGPVYLETNTLPGLT 296 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296 S++P+ A SFR+ L ++ A Sbjct: 297 AASLYPKALAAQNISFRDFLQQQIDLA 323 >gi|58696727|ref|ZP_00372272.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila simulans] gi|58537095|gb|EAL60215.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila simulans] Length = 175 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +A+L GG S ERE+SL SGKA AL+ + +IDVD ++ L + P LAF LHG Sbjct: 7 IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119 +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK + S + ++ + Sbjct: 67 PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + I PYV+KP+ GSS+G+ +I + Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHED 156 >gi|229826927|ref|ZP_04452996.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC 49176] gi|229788545|gb|EEP24659.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC 49176] Length = 174 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P ++KP G SS+G+ + Q L+++ ++ +Q+++EQ++ G E + V+ Sbjct: 1 MDFPVIVKPCCGDSSVGVCIAHNQQEYKAALMEAF--SYENQVVVEQFITGREFSVAVVD 58 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + P FY Y+ KYS+ + PA + + KE+Q A ++A+ + Sbjct: 59 GKAY-PVVEIAPLEGFYDYKNKYSAGSCVETCPADLSASLTKEMQMYAEKGYEALNLQAY 117 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +R DFL ++ LE N PGMTP S+ P+ A G ++ +L ++E Sbjct: 118 ARLDFLM-EEDGSMYCLEANTLPGMTPTSLIPQEARVIGMNYPQLCEKLIE 167 >gi|310821816|ref|YP_003954174.1| d-alanine-d-alanine ligase family protein [Stigmatella aurantiaca DW4/3-1] gi|309394888|gb|ADO72347.1| D-alanine-D-alanine ligase family protein [Stigmatella aurantiaca DW4/3-1] Length = 725 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 17/301 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S ++ +A A+ G +V ++ ++ + VLA D+ FN+ G + Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+LELL+IPYT S ++++DK +K++V G+ L+ + P Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487 Query: 128 YVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181 ++KP+ GSS V + + +++ + + L+E+Y+ G E T G+ Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELRE-VVKEIASKYKQPALVEEYIGGREFTVGLLGE 546 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + Y ++ + + PAK+ + + ++ A + Sbjct: 547 RRPRVLPPMEIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRAAARGSFM 606 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295 A+GCR ++R DF D +++++E N PG+TP S +A AG +R L+ ++ Sbjct: 607 ALGCRDVARIDFRMDDK-GRLYFIECNPLPGLTPGWSDLVLIAQGAGMDYRTLIGEIMAP 665 Query: 296 A 296 A Sbjct: 666 A 666 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 22/299 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74 A A A+E G ++ + +V L PDL FN G + A+ + Sbjct: 27 NALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L PYT S A A+++DK +K +++ G+ V + + + + P ++KP Sbjct: 87 LGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNF 146 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS GI + + + + +L+E+Y+ G +LT + D + Sbjct: 147 EGSSKGITQDSIAETLDEVRAKVTQALAKYPAGVLVEEYIGGKDLTVPFLAAVDNDYDGV 206 Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238 P + PA I ++V+++A Q + Sbjct: 207 LSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQVL 266 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 CR + R DF ++LEIN P + P + A G ++ +++ A+ Sbjct: 267 DCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQSAA 324 >gi|289432514|ref|YP_003462387.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT] gi|288946234|gb|ADC73931.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT] Length = 338 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 18/305 (5%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67 E + S + +A +AL AG V ++ + + K DL FN+ G + Sbjct: 26 EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEHKLDLVFNISEGLGNYRSREAQ 84 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124 + +LE+L+IPYT S A+ +DK +K++V+ GV + Sbjct: 85 IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS G+ + +S + ++ + +L+E++++G E+T GV+ Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204 Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G+ V VPK+ + + + +PA +P +++ A+ Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLAHIEKATLDAY 264 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294 + + C + R DF P ++LE+N PG+ PVS P MA+ G S +L+L ++ Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323 Query: 295 DASCL 299 A Sbjct: 324 TAIAR 328 >gi|255943331|ref|XP_002562434.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587167|emb|CAP94831.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255] Length = 366 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 123/330 (37%), Gaps = 43/330 (13%) Query: 7 GISSE------REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57 G S E + + +A S L+ G +V+ + S+ LA K DLAFN+ Sbjct: 26 GYSEEDCAALTHDGEI---QAVLSTLKKLGHQVTLVPGIESLVQQLAAGKHKCWDLAFNM 82 Query: 58 LHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 G G V A+L ++P+T + AL +K +K V++ +P P +++ Sbjct: 83 AQGFHGPARESQVPALLGAYQVPHTFADAATMALCQNKANTKMVLNHHNIPTAPFVVIPA 142 Query: 116 FTMDSQHL------ISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + + P +KP+ GSS G +K + + Q S + + Sbjct: 143 SEPADSLIKFTTSGLQYPLFVKPVTEGSSKGIDGFNKVKNPAELEPAVHQLRSKFPAEDI 202 Query: 167 LIEQYVDGIELTC---------------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 L+E ++ G E T + V + ++S + Sbjct: 203 LVEPFLSGREFTVGILGAGEDSRVIGVREFIWKKPSADFTNGVDGHPDLEFASRWSKSSR 262 Query: 212 THVLPAKIP--LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLEINVQPG 267 ++P + R++ A + GCR R D FD LE+N G Sbjct: 263 NKLIPRDQDLTHPQVQAACRVSLDAWKVFGCRDAGRVDIRFDSDEPDAVPNILEVNPISG 322 Query: 268 MTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 + P S P A G S+ ELL ++E A Sbjct: 323 LLPDHSPLPACAESNGISYAELLGAIIESA 352 >gi|167647366|ref|YP_001685029.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] gi|167349796|gb|ABZ72531.1| D-alanine--D-alanine ligase [Caulobacter sp. K31] Length = 331 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 125/322 (38%), Gaps = 38/322 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQ----IDVDRSVGLVLAHLKPDLAFNV- 57 +L GG S ER VS++S KA A+AL DA + V L ++ Sbjct: 5 ILFGGTSRERLVSVASAKALATALPDADLWFWAPDDKVYVASDAVLQAHARPFEIDLPTE 64 Query: 58 ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +HG E+G + A+ E + +T S +S L+ DK Sbjct: 65 GAAIGGIEAALDKAKAEERVLVLGMHGGAAENGDLAALCEARGVAFTGSDSRSSRLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-- 151 + +K V+ GV ++ + ++ V KP+ GSS G+I + + Sbjct: 125 IATKAAVAKAGVVAPSTVEL--ADAEAALAKYGKLVAKPVADGSSYGLIFVNGPADLETL 182 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ + + G+ G + P + Y KY S + Sbjct: 183 AAAAGREAYVIEPFVAGAEATCGVLEQDGKVFALPPVEIR---PADGAFDYVGKYLSKTT 239 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + PA + +Q A AH+ +G G SRSDF+ P +LEIN PGMT Sbjct: 240 EEICPATFAPAVNAAMQEAALKAHKTVGAGGYSRSDFIVTP--NGPIFLEINTLPGMTAA 297 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S++P+ G +F++ L + Sbjct: 298 SLYPKSLKAQGIAFKDFLDGQI 319 >gi|322699308|gb|EFY91071.1| hypothetical protein MAC_02957 [Metarhizium acridum CQMa 102] Length = 357 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 114/304 (37%), Gaps = 27/304 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNFGEDG--LVQAILEL 74 KA A+ LE G V+ + S+ L H DLAFN+ G G V A+LE Sbjct: 41 KAVAAGLESLGHDVTIVPGVSSLVEHLAAGKHKNWDLAFNMAQGFHGPARESHVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKP 132 IPYT S AL +K +K +++ GVP P +++ + + P +KP Sbjct: 101 YLIPYTFSDAATMALCQNKANTKIILNHHGVPSAPFMVIPSEHLSIHATLPPEYPLFVKP 160 Query: 133 LKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 GSS + + L + + + G +L+E ++ G E T ++G S Sbjct: 161 ATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSHSR 220 Query: 190 T----EIAVPKSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAH 235 E Y + + + K ++A Sbjct: 221 VVGIREHIWQTFPENGYHATEEFASWKSKLSEGCLLRYNDAHDMDDPQVKAACQVALDTW 280 Query: 236 QAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292 A+GCR R D F D LE+N G+ P S P A G SF LL + Sbjct: 281 TALGCRDAGRVDIRFNSDDADAIPNVLEVNPIAGLLPGHSPLPASAEENGLSFEALLTAI 340 Query: 293 VEDA 296 ++ A Sbjct: 341 IKSA 344 >gi|153004284|ref|YP_001378609.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] gi|152027857|gb|ABS25625.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5] Length = 731 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 17/301 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL-- 67 +E + S + +A A+ G +V ++ + VLA D+ FN+ G G + Sbjct: 368 AEYD-SPKTLQAIREAIASYGHEVVDLEATTELPFVLAATPVDVVFNIAEGFRGRNRESA 426 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+LELL+IPYT S A ++S+DK +K++V + GV +++ +S P Sbjct: 427 VPALLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGVLTPDYAVMHTGKERLPRELSFP 486 Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181 ++KP+ G +++ + + + + + L+E YV G E T G+ Sbjct: 487 LLVKPVAEGTSKGVTKKSIVRDELELRE-VARELIAKYRQPALVEAYVAGREFTVGLLGE 545 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236 Y + + + +PA++ ++R A Sbjct: 546 RRPRVLPPMEIVFLDASDPTPIYSFEMKQDWNDKIRYEVPARLSPRELDRLERAARECFT 605 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295 A+GCR I+R DF D +++++E N PG+ P S +A AG +R L+ ++ Sbjct: 606 ALGCRDIARVDFRMDAE-GRIYFIECNPLPGLAPGWSDLVLIAQAAGIEYRALIGEILAF 664 Query: 296 A 296 A Sbjct: 665 A 665 Score = 86.5 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 22/298 (7%) Query: 21 ACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 A A+ALE G +V +++V L PDL FN G + A+ + L Sbjct: 28 ALAAALERLGHRVERLEVSGPASRTVARLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +PYT S A AL++DK +K V++ GV V + + P ++KP Sbjct: 88 GMPYTGSDAYALALTLDKQLTKLVLAQHGVATPRWQYVEEARQLQPNALRYPVIVKPNFE 147 Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI + ++++ + + LL+E+++ G ++T + A+ + + Sbjct: 148 GSSKGITQDSVVEDSLRLHEVVREALRRYPAGLLVEEFIVGRDVTVPYLEAAAPERHGVL 207 Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239 P + + + PAK+ + +Q+L ++ +G Sbjct: 208 QPVEYVIDEAAAATRRYAIYDYELKTKLDRYVSVRAPAKLKRSQAERIQQLCETVYRQLG 267 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 R + R D +++LEIN P + P + AA G +L ++E A+ Sbjct: 268 IRDLGRIDLRL-GEDGAIYFLEINALPSLEPGAGIYASAALEGLHADAVLGAVIESAT 324 >gi|268323535|emb|CBH37123.1| putative D-alanine--D-alanine ligase [uncultured archaeon] gi|268323656|emb|CBH37244.1| putative D-alanine--D-alanine ligase [uncultured archaeon] Length = 339 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 25/297 (8%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG--NFGEDGLVQAILELLEI 77 AL G +V I+ D L + D+ FN+ G + + AI ++LEI Sbjct: 35 VREALMADGNEVILIEADGDAYGKLKEERRDIDIVFNIAEGLRGESRESYIPAICDMLEI 94 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKG 135 PYT SG+L L ++K+R+K+++ G+P L +D + + P ++K L Sbjct: 95 PYTGSGVLTLGLCLNKVRTKEILRYYGIPTPDFWLFRSKNEKLDLELELKFPLIVKLLHE 154 Query: 136 GSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV----------- 181 GS +G+ ++ ++ + + +G+ +++E+++DG E T G+ Sbjct: 155 GSQMGLSSDSIVCSEEDLRDRVAYLMH-EYGEPVIVEEFLDGREFTVGILGNEKPIILPI 213 Query: 182 ----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + + + +L V PA + D+ E++ +A A++A Sbjct: 214 VEALFEEGQKMRLFTPDKPLLPFIPKGVAINLKERSVCPADVDEDLRSEIEEIALNAYRA 273 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + CR R D LE+N G+ P + P A AG S++ L+ ++E Sbjct: 274 LDCRDWCRIDLRMTRDGDIPNVLELNPIAGIDPSYLLPRAAKAAGISYKRLINMILE 330 >gi|291533191|emb|CBL06304.1| D-alanine--D-alanine ligase [Megamonas hypermegale ART12/1] Length = 232 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPP 127 ++++PYT +L+SA++MDK+ SK + S G+ ++ + D S P Sbjct: 1 MIDMPYTSCSVLSSAITMDKVASKHLFRSTGISTPNCLIYRKTDTDRNLVEEIAGKFSMP 60 Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 V+K GSS+G+ +++K + + + + D +L+E+++ G EL+ V G+ Sbjct: 61 VVVKAASQGSSIGVEIVEKKEDLQKAIDACF--EYDDAILVEEFIKGRELSIPVYGNKEK 118 Query: 188 D--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 S Y Y+ KY+ S H++PA + ++ ++Q+L A CRG+ R Sbjct: 119 KALPIIEITTNSGRYDYKSKYTKGESFHIIPAPLSEELTAKIQKLCIDACTVADCRGVVR 178 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + + LEIN PGMT S+ P+ A + G SF EL +++ A Sbjct: 179 VDVMLSEE-NIPYVLEINSVPGMTQTSLVPDAANHVGISFGELCEMILQMA 228 >gi|294141187|ref|YP_003557165.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12] gi|293327656|dbj|BAJ02387.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12] Length = 336 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 121/322 (37%), Gaps = 36/322 (11%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40 ++ GG E +SL S K ++L + +I++D R Sbjct: 8 LICGGGGDEHAISLMSAKFFETSLAKLAHINLLKIELDAQGHYRTQAGELCELTNRKQIR 67 Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + A D +HG GE G +Q+ EL+++PY AS +K+ +K Sbjct: 68 FDDVNKASWPVDYVIPCIHGYPGETGDIQSYFELIKLPYFGCDSEASRNCFNKVTAKMWF 127 Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 S+ G+P P I +N F IK GSS+G + + + L Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSPEELTESL 187 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 Q+ + +++E+ ++ EL V + + + + + Sbjct: 188 KQAF--TYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICGTNTFYTFDEKYAENS 245 Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + +E++ A + + +SR DF ++ EIN PG+T Sbjct: 246 QAETKVVADISESVSQEIREYAVKVFKGMKLSHLSRIDFFLTA-DNEILLNEINTFPGLT 304 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P+S+FP+M G +F + L Sbjct: 305 PISMFPKMLQNHGDNFSDYLNH 326 >gi|218506497|ref|ZP_03504375.1| D-alanine--D-alanine ligase [Rhizobium etli Brasil 5] Length = 111 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 69/93 (74%), Positives = 76/93 (81%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA+ALE GFKV+ IDV R V LA LKPD+ FN LHG Sbjct: 6 VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDK 98 >gi|152991773|ref|YP_001357494.1| D-alanyl-alanine synthetase A [Sulfurovum sp. NBC37-1] gi|189083062|sp|A6Q6M8|DDL_SULNB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151423634|dbj|BAF71137.1| D-alanine-D-alanine ligase [Sulfurovum sp. NBC37-1] Length = 346 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 130/330 (39%), Gaps = 51/330 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVL----- 46 +A+L GG S E E+S+ S L+ A K ID ++ + Sbjct: 3 IAILFGGSSFEHEISIVSAITMKKVLKKSTLTYIFVSADRKFYLIDTEKINSKLFSSGEY 62 Query: 47 ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 + D+ N++HG GEDG V +++E IPY + Sbjct: 63 KKGKQLVLKNDGFFTKGMFGSKQVAFDVLLNLIHGRDGEDGKVASMMEFFNIPYISPRLE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ASA+S +K+ +K + S GV P + D + + P +IKP++ GSS+G+ ++K Sbjct: 123 ASAMSYNKLYTKFLAESLGVKTVPYEHL-SKNGDRKISMEYPVIIKPVRLGSSIGVSIVK 181 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + L + + +++E ++DG E +++ + P+ + + Sbjct: 182 SEAELDYALDVAF--EFDNDVIVEPFIDGVKEFNQAGCHTGDWELSIVEEPQKEEFLDFE 239 Query: 205 KYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 K S A I ++ +Q + + I R DF ++ ++ EI Sbjct: 240 KKYMDFSRDSQVLSADISEELKNNIQVTFKKIYDPLFMGSIIRCDFFV--VNDEILLNEI 297 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 N PG +FP F ++ + Sbjct: 298 NPIPGSMANYLFP--------DFEGMVWRL 319 >gi|114563717|ref|YP_751230.1| D-alanyl-alanine synthetase A [Shewanella frigidimarina NCIMB 400] gi|122299324|sp|Q080C3|DDL_SHEFN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|114335010|gb|ABI72392.1| D-alanine--D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 336 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 123/316 (38%), Gaps = 34/316 (10%) Query: 10 SEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK------------------ 50 +E ++SL S + S+L + F V ++ +D+ K Sbjct: 15 AEHDISLMSARFFESSLAKSDKFSVLKLVLDKHGHYHTEDGKLCDLTNRREIRFEDNSTP 74 Query: 51 ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 D +HG GE G +Q+ L+++PY AS+ +K+ +K S+ GVP Sbjct: 75 AWSVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGVPN 134 Query: 108 CPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 P I +++ ++ +K GSS+G + +I L + S+ Sbjct: 135 TPYIFLHQLDDDAIKQTETAFDNWGSVFVKAASQGSSVGCYKVDVKANIANVLKDAFSYA 194 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----THVLPA 217 + + +E+ + + Y + T V+ Sbjct: 195 PYVVVEQTIHARELEVAVYQYQGEVVATLPGEIICDSNTFYSFDEKYATNSKARTDVVAD 254 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + +I + ++ A A + + R +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 255 NLSPEISQLIRDYAVKAFKGMKLRHLSRIDFFLTA-DNQILLNEINTFPGLTPISMFPKM 313 Query: 278 AAYAGYSFRE-LLLWM 292 G++F E L+ + Sbjct: 314 LQNHGHNFTEYLIDVI 329 >gi|315498872|ref|YP_004087676.1| d-alanine--d-alanine ligase [Asticcacaulis excentricus CB 48] gi|315416884|gb|ADU13525.1| D-alanine--D-alanine ligase [Asticcacaulis excentricus CB 48] Length = 329 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 33/323 (10%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQID---VDRSVGLVLAHLKP-------- 51 +L GG+S ER V++++ ++ AL + D + S +L H +P Sbjct: 5 LLFGGLSRERLVAVATTQSLHKALPEGDLWFWDEDNHVYEASSLALLGHQRPFEVPFRAD 64 Query: 52 -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 D + LHG E+G Q E +P+T SG AS L+ DK Sbjct: 65 GHDLGTIDQALDRAAAEDRVLVLGLHGGIAENGEFQVKCEARGVPFTGSGSAASHLAFDK 124 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + +K+ + GV I + +D+ V KP + GSS G+I + + Sbjct: 125 VSAKRFAACAGVSSPAGIAL--SELDAAFAEYGKLVAKPAQDGSSFGLIFVNSTNDLVAV 182 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + + + + G +P + Y KY S + Sbjct: 183 RDAAKEQPYLIEPFVTGAEATCAVLEQTDGSLIALPPIEIIPDRGAFDYHSKYLSNKTQE 242 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + PA+ ++ E+QRLA AH+A+ CRG +RSDF+ ++E N PGMT S+ Sbjct: 243 ICPARFAPEVIAEIQRLAIAAHKALSCRGYTRSDFIVSDKG--PVFIETNTLPGMTASSL 300 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 +P+ A G F E L V+ A Sbjct: 301 YPKALAAQGIGFVEFLHGQVDIA 323 >gi|67479916|gb|AAY67966.1| truncated D-alanine:D-alanine ligase 2 [Enterococcus gallinarum] Length = 305 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 134/310 (43%), Gaps = 53/310 (17%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37 + VL GG+S ER+VSLSSG A ALE+ G + +D Sbjct: 3 IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFEAAYSIQKQEENP 62 Query: 38 ----VDRSVGLVLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILEL 74 VD + + ++ D F LHG GE+G +QA +L Sbjct: 63 YDYFVDENEPDIEKLIQKNSSQKNVMGKNVVELCRDADFCFIALHGGIGENGKLQAFFDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 I Y+ S S L+MDK +KQ++ +P + + P V+KP+ Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQIWEQGQEVYYSS---PCVVKPID 179 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 GSS+G+ +++ + L + + +++IEQ ++G E + GV+GD L + Sbjct: 180 NGSSIGVEIVENKEQFSKAL--KKAEKYNSKVMIEQKIEGREFSVGVLGDNVLPAI-EII 236 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 P+ FY+YE KY + + PA I D+ + + L ++ +G SR D++ Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTKEL 296 Query: 255 RKVFWLEINV 264 ++ +E N Sbjct: 297 D-IYCIEANS 305 >gi|297583027|ref|YP_003698807.1| D-alanine--D-alanine ligase domain-containing protein [Bacillus selenitireducens MLS10] gi|297141484|gb|ADH98241.1| D-alanine--D-alanine ligase domain protein [Bacillus selenitireducens MLS10] Length = 714 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 18/295 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGED 65 L + K L+ G +V + D+++ L +P L FN+ +G G Sbjct: 28 LETIKKIKDGLQSLGHQVKTFEGDKNIIAKLEEFMPSVISGERPGLVFNLSYGIQGKGRY 87 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 V ILE++ +PY SG AL++DK+ +K ++ G+P + + ++ Sbjct: 88 MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPRFAELEKPDSPITAELT 147 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179 P ++KP S G+ ++ ++ + + L+E+Y++G E+ Sbjct: 148 YPLIVKPKNEAVSFGLKIVHNEEELRDGVKTIYD-TFQSPTLVEEYIEGREVNVGLLGNN 206 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V +++ P+ Y + V PA + ++ ++V++LA A+ Sbjct: 207 PVEALPPVELVFGDGPQIFTYEDKTSGQGSRVQKVCPAPLDDELMEKVKQLAIDTFHALN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 C +R DF D + + LE+N + F A G S+ E++ +VE Sbjct: 267 CFDTARVDFRID-KNGNPYILEVNSMASLGADGSFVYAAQTLGMSYAEIMNRIVE 320 >gi|325919672|ref|ZP_08181675.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325549835|gb|EGD20686.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 198 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 4/178 (2%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P ++KP GSS+GI + + ++ ++ + LL+EQ ++G EL Sbjct: 23 HAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIEGDEL 80 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+G+ +L VPK +Y Y KY + ++ ++ P + +++LA A +A Sbjct: 81 TVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALDAFRA 138 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++E Sbjct: 139 AGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVLEQ 196 >gi|325921424|ref|ZP_08183280.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325548066|gb|EGD19064.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 199 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 4/178 (2%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P ++KP GSS+GI + + ++ ++ + LL+EQ ++G EL Sbjct: 24 HAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIEGDEL 81 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T V+G+ +L VPK +Y Y KY + ++ ++ P + +++LA A +A Sbjct: 82 TVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALDAFRA 139 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG R D + D S +++ LE+N PGMT S+ P+ A G F EL+ ++E Sbjct: 140 AGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVLEQ 197 >gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 363 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 65/323 (20%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------- 51 GG S+E +S S + L+ F V + + + VL P Sbjct: 20 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 79 Query: 52 ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 D+ F VLHG +GEDG +Q +LEL + Sbjct: 80 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 139 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 140 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 199 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ Sbjct: 200 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 257 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 258 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 317 Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266 +R DF EIN P Sbjct: 318 ARVDFFLT--DDGPVINEINTMP 338 >gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 345 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 65/323 (20%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + F VLHG +GEDG +Q +LEL + Sbjct: 62 KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133 PY +G+LASA+ MDK +K+++++ G+PV + + P +KP Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186 +GGSS+G+ + +P + + + H ++++E + G EL CGV+ Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239 Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + V + + FY + KY + +PAK+ + + +++LA A AI CRG+ Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299 Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266 +R DF EIN P Sbjct: 300 ARVDFFLT--DDGPVINEINTMP 320 >gi|73748467|ref|YP_307706.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1] gi|73660183|emb|CAI82790.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1] Length = 338 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 18/305 (5%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67 E + S + +A ++L AG V ++ + + K DL FN+ G + Sbjct: 26 EYD-SPETVEAITNSLTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124 + +LE+L+IPYT S A+ +DK +K++V+ GV + Sbjct: 85 IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS G+ + +S + ++ + +L+E++++G E+T GV+ Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204 Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G+ V VPK+ + + + +PA +P +++ A+ Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294 + + C + R DF P ++LE+N PG+ PVS P MA+ G S +L+L ++ Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323 Query: 295 DASCL 299 A Sbjct: 324 TAIAR 328 >gi|147669247|ref|YP_001214065.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1] gi|146270195|gb|ABQ17187.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1] Length = 338 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 18/305 (5%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67 E + S + +A +AL AG V ++ + + K DL FN+ G + Sbjct: 26 EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124 + +LE+L+IPYT S A+ +DK +K++V+ GV + Sbjct: 85 IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182 P +KP GSS G+ + +S + ++ + +L+E++++G E+T GV+ Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204 Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 G+ V VPK+ + + + +PA +P +++ A+ Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294 + + C + R DF P ++LE+N PG+ PVS P MA+ G S +L L ++ Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLALEILN 323 Query: 295 DASCL 299 A Sbjct: 324 TAIAR 328 >gi|37544103|gb|AAQ93036.1| D-alanine-D-alanine ligase B [Rhizobium etli] Length = 136 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 68/93 (73%), Positives = 75/93 (80%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG SSER VSLSSGKACA ALE GFKV+ +DV R V LA LKPD+ FN LHG Sbjct: 32 VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 91 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 FGEDG +Q ILE LEIPYTHSG+LASAL+MDK Sbjct: 92 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDK 124 >gi|16519939|ref|NP_444059.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] gi|2494029|sp|P55650|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG gi|2182621|gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 336 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 19/294 (6%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHGNFGEDG--LV 68 + +AL++ G + + D+ + L PD + FN+ G GE V Sbjct: 35 ADSVVAALQECGHETLLCEGDKGLLTTLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHV 94 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 A+LE+ +PYT S L L+ DK+ SK ++ GVP ++ R T + + P Sbjct: 95 PAMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPTPNFSIMRRGTEST-DDLRFPV 153 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 V+KP +S G+ ++ + + + + + L+E+Y+DG E+ ++G+ ++ Sbjct: 154 VVKPRHEDNSFGLQLVHEPAQLQQAVKMIVT-KYAQDALVEEYIDGREIHVALLGNQEVE 212 Query: 189 VTEIAVPKSDFYSYELKYSSLNS------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V + + + L PAKI + ++ ++ +A CR Sbjct: 213 VLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATFRACQCRD 272 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R D D S + F LEIN PG++ S + A AG+S+ L+ +++ A Sbjct: 273 YARVDLRLD-RSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLINGILDVA 325 >gi|296313256|gb|ACZ97544.2| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 301 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 11/256 (4%) Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 + D F V+HGN GEDG +Q + +LL PY S I ASA++ DK +K++++ G+ Sbjct: 47 EQEEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNISASAMAFDKDLTKKIITQAGIR 106 Query: 107 VCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 P + + + + IKP K GSS+GI + + L + + Sbjct: 107 NTPYVLVTPENRADYSWGRIEEQLGNLTFIKPAKQGSSVGIHRVTNAEEYEAALNDAFKY 166 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----THVLP 216 ++ + + + + AV + + + LP Sbjct: 167 DYKVLVEQGIDRPQEVEISILGNEHPIASKLGAVRVPEDDLFYDYENKFVDASGVVFELP 226 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 K+P + E+ +A A++A+G +G++R DFL D + + E N PG T +S++P+ Sbjct: 227 VKLPQYLVDEITDMALKAYKALGMKGLARIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQ 285 Query: 277 MAAYAGYSFRELLLWM 292 M +G S+ EL+ + Sbjct: 286 MWEVSGISYSELIDRL 301 >gi|108757010|ref|YP_632275.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK 1622] gi|108460890|gb|ABF86075.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK 1622] Length = 729 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 134/302 (44%), Gaps = 18/302 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S ++ +A A+ G +V ++ + VL+ D+ FN+ G + Sbjct: 371 AEYD-SPNTLQAIREAIASWGHEVIDLEATAELPSVLSSTPLDVVFNIAEGFKGRNRESQ 429 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-P 126 V A+LELL+IPYT S ++++DK +K++V G+ L+ + Sbjct: 430 VPALLELLDIPYTGSDPATLSIALDKGLAKKIVRQAGILTPNFQLMATGKERLNKEFTSF 489 Query: 127 PYVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181 P ++KP+ GSS V + + +++ + + LIE+Y+ G E T G+ Sbjct: 490 PLIVKPVAEGSSKGVVTKSVCHSEAELRE-VVREIAGKYQQPALIEEYIRGREFTVGLLG 548 Query: 182 ---MGDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + Y ++ + + PAK+ + + ++ A + Sbjct: 549 ERRPRVLPPMEIVFLDREEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRTAARNSF 608 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294 A+GCR ++R DF D +++++E N PG+TP S +A AG +R L+ ++ Sbjct: 609 MALGCRDVARIDFRMDDK-GRIYFIECNPLPGLTPGWSDLVLIAQGAGMDYRGLIGEIMA 667 Query: 295 DA 296 A Sbjct: 668 PA 669 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 22/299 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74 A A+A+E G ++ + +V L PDL FN G + A+ + Sbjct: 27 NALAAAIERIGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L PYT S A A+++DK +K V+S G+ V + + S + P ++KP Sbjct: 87 LGFPYTGSDAYALAVTLDKQLTKLVLSKQGIRTPGWQYVEKLSELSAENLRFPVIVKPNF 146 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS GI + + ++ + +L+E+Y+ G +L + D + Sbjct: 147 EGSSKGISQDSIAETLDEVRAKVAAALEKYPSGVLVEEYISGRDLAVPFLESVDNDYDGV 206 Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238 P + + + PA+IP ++V+R+A ++A+ Sbjct: 207 LSPVEYVIDPAVTQGRKYAIYDYALKTSREGTVSVRAPAQIPPRTAEDVRRMAQKVYRAL 266 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 CR + R D ++LEIN P + P + A G ++ ++ A+ Sbjct: 267 DCRDLGRIDVRLSDA-GVPYFLEINALPSLEPGAGIYAAAELDGLHLDGVINSIITSAA 324 >gi|301511265|ref|ZP_07236502.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058] gi|301597563|ref|ZP_07242571.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059] Length = 170 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 4/166 (2%) Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP+ GSS+G+ ++K + + +++ H ++ E+++ G E T + L V Sbjct: 2 KPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVI 59 Query: 191 EIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + P FY YE KY + + +P + K++Q L A QA+G G R D + Sbjct: 60 RLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAM 119 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 D + LE+N PGMT S+ P+ A GYSF EL + +++ Sbjct: 120 QDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 164 >gi|161528516|ref|YP_001582342.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1] gi|160339817|gb|ABX12904.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1] Length = 743 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 25/312 (8%) Query: 4 LMGGISSEREVSLSSGKAC---ASALEDAGFKVSQIDVDRSVGLVLAHL--------KPD 52 + G + E S KA A ALE G V I+ D + L KP Sbjct: 41 VFGMTTKEH----YSSKAVERVARALEKGGHSVKVIEGDIHLADELREFMPKVVSGEKPG 96 Query: 53 LAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + FN+ +G V A++E+L IPY SG A+ DK+ +K V+ +P Sbjct: 97 MVFNMAYGIQGQNRYTHVPAMMEMLGIPYIGSGPAGHAIVQDKVMTKIVLQKNNIPTP-G 155 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + D + P ++KP +S+G+ V+ + + + +L+EQ Sbjct: 156 FWVFKTPDDKFDDLVFPVIVKPKLESTSMGMEVVDNWDDLRNAVKVQIE-KYQQDILVEQ 214 Query: 171 YVDGIELTCGVMGDASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++ G E G++G++ V + K + PAK+ + + Sbjct: 215 FISGREFAVGLIGNSPNIEVLPIVEINLGDPDKIQTISDKKKTGGVDKTCPAKLSKEKTE 274 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++ A A+G +R DF D ++ LE+N + A AGY++ Sbjct: 275 YMKKICIDAFTALGLNDYTRVDFRMD-KDENIYILELNSMASLGMGGSLFYAAKTAGYTY 333 Query: 286 RELLLWMVEDAS 297 L+ +++ A+ Sbjct: 334 ESLINKILDVAT 345 >gi|153810104|ref|ZP_01962772.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174] gi|149834282|gb|EDM89362.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174] Length = 226 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 4/171 (2%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V+K GGSS+G+ ++ + L + ++ + + + Sbjct: 53 MDFPVVVKTCCGGSSIGVYIVDNQEDYTKALDGAFTYENEVVVEEFVEGVEYTVAVV--- 109 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D VP FY YE KY PA I ++ K +Q A + A+ Sbjct: 110 DGKAYPVVQIVPVQGFYDYENKYKPGAVKETCPAPISEELTKRLQEAAVDGYHALEMESY 169 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +R DF+ K++ LE N PGMTP S+ P+ AA G + L +++ Sbjct: 170 ARLDFIVT-KDEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIK 219 >gi|317128999|ref|YP_004095281.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522] gi|315473947|gb|ADU30550.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522] Length = 714 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 19/301 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGED 65 L + K + L G +V + D+++ L +P L FN+ +G G Sbjct: 28 LETIKNIKNGLLAGGHQVKTFEGDKNIINKLEDFMPSVISGERPGLVFNLSYGIQGKGRY 87 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 V ILE++ +PY SG AL++DK+ +K ++ G+P +++ +S Sbjct: 88 MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPKFTVLDNPDSKFHEDLS 147 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179 P ++KP S G+ ++ ++ + + L+E+Y++G E+ Sbjct: 148 YPLIVKPKNEAVSFGLKIVNNEEELRDGVKTIYE-KFNSPTLVEEYIEGREVNVGLLGNN 206 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V +++ P+ + + S V PA I ++ K+VQ+LA +A+ Sbjct: 207 PVEALPPVELVFGEGPQIYTFEDKKNKSGRTVEKVCPAPISEELTKKVQQLAIDTFKALD 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 C +R DF D + LE+N + F A G ++ +L+ +V+ +C Sbjct: 267 CYDTARVDFRIDKEGN-PYILEVNSMASLGADGSFVFAADKVGLNYSDLMNRIVDI-TCE 324 Query: 300 R 300 R Sbjct: 325 R 325 >gi|220916612|ref|YP_002491916.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954466|gb|ACL64850.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1] Length = 728 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 17/301 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S + +A A+ G +V ++ + + L L D+ FN+ G + Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V ++LELL+IPYT S A ++S+DK +K++V + G+ +++N ++ P Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486 Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181 ++KP+ G V++ + + + + + L E YV G E T G+ Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236 K Y + + + +PAK+ + +++ A Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLTPRELERLEKAARECFT 605 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295 A+GCR ++R DF D ++ ++E N PG+ P S +A AG +R L+ ++ Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSF 664 Query: 296 A 296 A Sbjct: 665 A 665 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 22/297 (7%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 A A A+E G +V +I+V L PDL FN G + A+ + L Sbjct: 28 ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +PYT S A ++++DK +K V++ GV V + + P ++KP Sbjct: 88 GMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147 Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI +++Q + LL+E++V G +LT + A+ + + Sbjct: 148 GSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPERHGVL 207 Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239 P + + + PAK+ + +Q+L ++ +G Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDQAVSVRAPAKVKRAQAERIQQLCETVYRELG 267 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + R D ++++LEIN P + P + AA G +L +++ A Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323 >gi|86158871|ref|YP_465656.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775382|gb|ABC82219.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 727 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 130/301 (43%), Gaps = 17/301 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S + +A A+ G +V ++ + + L LA D+ FN+ G + Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLASTPVDVVFNIAEGFKGRSRESQ 426 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V ++LELL+IPYT S A ++S+DK +K++V + G+ +++N ++ P Sbjct: 427 VPSLLELLDIPYTGSDPSALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486 Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181 ++KP+ G V++ + + + + + L E YV G E T G+ Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDELELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQ 236 K Y + + +PAK+ +++ A Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWSERIRYEVPAKLSPRELDRLEKAARECFT 605 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295 A+GCR ++R DF D ++ ++E N PG+ P S +A AG +R L+ ++ Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRGLIGEILSF 664 Query: 296 A 296 A Sbjct: 665 A 665 Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 22/297 (7%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 A A A+E G +V +I+V L PDL FN G + A+ + L Sbjct: 28 ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +PYT S A A+++DK +K V++ GV V + + P ++KP Sbjct: 88 GMPYTGSDAYALAVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147 Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI +++Q + LL+E++V G +LT + A+ D + Sbjct: 148 GSSKGITQDSVVDDPVRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPDRHGVL 207 Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239 P + + + PAK+ + +Q+L ++ +G Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVYRELG 267 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + R D ++++LEIN P + P + AA G +L +++ A Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323 >gi|197121819|ref|YP_002133770.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] gi|196171668|gb|ACG72641.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K] Length = 728 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 17/301 (5%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S + +A A+ G +V ++ + + L L D+ FN+ G + Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V ++LELL+IPYT S A ++S+DK +K++V + G+ +++N ++ P Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486 Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181 ++KP+ G V++ + + + + + L E YV G E T G+ Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545 Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236 K Y + + + +PAK+ + +++ A Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLSPRELERLEKAARECFT 605 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295 A+GCR ++R DF D ++ ++E N PG+ P S +A AG +R L+ ++ Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSF 664 Query: 296 A 296 A Sbjct: 665 A 665 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 22/297 (7%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 A A A+E G +V +I+V L PDL FN G + A+ + L Sbjct: 28 ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +PYT S A ++++DK +K V++ GV V + + P ++KP Sbjct: 88 GMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147 Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI +++Q + LL+E++V G +LT + A+ + + Sbjct: 148 GSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPERHGVL 207 Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239 P + + + PAK+ + +Q+L ++ +G Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVYRELG 267 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 R + R D ++++LEIN P + P + AA G +L +++ A Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323 >gi|17902566|emb|CAC84690.1| D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 43/286 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA MDK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + ++ + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 E + S N+ +PA IP++ K VQ A ++ +GCRG++R Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289 >gi|229091614|ref|ZP_04222819.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] gi|228691763|gb|EEL45513.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42] Length = 219 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 9/220 (4%) Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 +L+S + MDK SK+++ G+ I + +D + P V+KP GGSS+G Sbjct: 1 MLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNLDELDKLGFPLVVKPNSGGSSVG 60 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 + ++ + L W +++IE+Y+ G E+TC + ++F+ Sbjct: 61 VKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEITCSIFDG-KQLPIISIRHAAEFF 117 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y KY + + ++P ++ + V + + ++A+ C +R D + + + Sbjct: 118 DYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKALKCSVYARVDMMV--KDGIPYVM 174 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 E+N PGMT S+ P+ A AG + +LL ++E + +R Sbjct: 175 EVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 214 >gi|218681670|ref|ZP_03529471.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 894] Length = 320 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 16/263 (6%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ F VLHG GEDG VQ E+ +P GIL SA ++DK +K+++ + G+PV + Sbjct: 59 IDILFPVLHGPHGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARA 118 Query: 111 ILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + ++ + + P IKP + GSS+G+ + Q L Q+ H L Sbjct: 119 VTIHAGAAPSLSVLEGELGLPLFIKPARQGSSVGVAKVHASQEFAAALEQAF--RHDRTL 176 Query: 167 LIEQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 L E++V G E+ V+ + A + + +PA + Sbjct: 177 LAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVPAESHGFYNYNAKYIDENGAALKVPADL 236 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P +I ++ +A A +A+GC G++R DF + E+N PG T +S++ + A Sbjct: 237 PSEIEAAMRDMAAKAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAMA 295 Query: 280 YAGYSFRELLLWMVED--ASCLR 300 +G S+ E++ +V A R Sbjct: 296 ASGVSYAEIIDRLVAHGMARARR 318 >gi|269104486|ref|ZP_06157182.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161126|gb|EEZ39623.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 287 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 15/274 (5%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +++DR++ + +HG GE G +Q+ L++ +PY G AS +K+ Sbjct: 16 LNLDRTLQTGDTKQIINYVIPCVHGFPGETGDLQSFLDMAGLPYLGCGAEASRNCFNKIT 75 Query: 96 SKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +K + +P P + +K GSS+G + + Sbjct: 76 TKLWFDALDIPNTPYVFLSENNEDAHTKASEAFDKWGKVFVKAASQGSSVGCYSVTDKAN 135 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELK 205 + + + ++ + DQ+LIE+ + EL + P FYSYE K Sbjct: 136 L--AAVVNDAFGYSDQVLIEKSIKPRELEIAAYQYGDELIITKPGEVSCPDDKFYSYEEK 193 Query: 206 YSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 YSS + + + + + ++ A A + + +SR DF ++ EIN Sbjct: 194 YSSDSHSTTAVEATNLSEEQVEALRECARKAFVHMKLKDLSRIDFFLSE-DNEILLNEIN 252 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 PGMTP+S+FP+M G+SF + + ++ A+ Sbjct: 253 TFPGMTPISMFPKMLENHGHSFTKFIEQAIKSAA 286 >gi|17902563|emb|CAC84688.1| D-Ala:D-Lac ligase [Enterococcus faecium] Length = 289 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 43/286 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +A++ GG S E +VS+ S A+ ++ F I + ++ L Sbjct: 6 VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+AF VLHG GEDG +Q + L IPY I + Sbjct: 66 AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SA +DK + + + G+ V ++++ ++ P +KP + GSS G+ + Sbjct: 126 SAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199 + + + ++ + ++LIEQ + G E+ C VMG+ + Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 E + S N+ +PA IP++ K VQ A ++ +GCRG++R Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289 >gi|320160017|ref|YP_004173241.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319993870|dbj|BAJ62641.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 400 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 127/305 (41%), Gaps = 33/305 (10%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77 +A SA+E G + D ++ L +PD+ FN+ G + V A+LE+L I Sbjct: 62 EAIQSAIESDGHTTRFLSADHTLLDSLREYQPDICFNIAEGIIGDAREAQVPALLEMLGI 121 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S +LA+AL +DK +K++ + G+P + +S P +KP + G+ Sbjct: 122 PYTASRVLANALGLDKTMTKRIWRNLGIPTASFQEFITGDEPLEADLSFPLFVKPAREGT 181 Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 +G+ ++ + + + H L+E Y+ G E T GV+G A Sbjct: 182 GMGMDEGSIVYNENQLRRRVKWVIEAYH-QPALVETYLPGREFTVGVLGRADARRWSPKP 240 Query: 195 PKSDFYSYE-------------------------LKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + PA++ D+ +++ Sbjct: 241 HLYRADGFHRFPILEVDNSNTVTPGVYGYAAKTLHPGEEGVPGFICPAQVEPDLAEKLWT 300 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288 LA AH AIG +SR D D LEIN PG+TP S +A G S+R+L Sbjct: 301 LAIRAHNAIGALDVSRVDVRLDAHGN-PRLLEINTLPGLTPGFSDLCVIAQAEGLSYRDL 359 Query: 289 LLWMV 293 +L ++ Sbjct: 360 ILEIL 364 >gi|162449160|ref|YP_001611527.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum 'So ce 56'] gi|161159742|emb|CAN91047.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum 'So ce 56'] Length = 1185 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 16/298 (5%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAIL 72 S + +A SA+E G V ++ + LA D+ FN+ G G + V A+ Sbjct: 395 SPRTIQAITSAIESYGHTVVPLEATPDLPRALAASGVDVVFNIAEGLRGRGREAQVPALC 454 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132 ELL IPY+ S +L++DK +KQ++ + G+ +V + P ++KP Sbjct: 455 ELLGIPYSGSDATTLSLALDKGLTKQILRAAGIETAEWQVVTTGREKLKP-FRYPVIVKP 513 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTC------GVMGD 184 G+S GI + + + LIE+Y+ G E T Sbjct: 514 NAEGTSKGITSASVVKDEAAARAAAKQLVDRYHQPALIEEYITGREFTVGLLGERRPKVL 573 Query: 185 ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 ++V + P Y Y+ K + PA++ + V+++ A+ CR + Sbjct: 574 PPMEVVFVDPPAYPVYGYDEKQSDTPRVRFECPAQLTPSELRRVEKVVRDTFAALACRDV 633 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R D +V+ +EIN PG+TP S +A AG +R L+ ++ A CL+ Sbjct: 634 ARVDLRM-AKDGRVYVIEINPLPGLTPDFSDLCVIAKVAGMDYRMLIGEIL--AGCLK 688 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 37/317 (11%) Query: 20 KACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILEL 74 A A ALE AG +V +I+V V L L+PDL FN G+ G+ ++ + Sbjct: 27 AAIAGALERAGHEVERIEVSGPASRVLARLEALQPDLIFNTAEGHKGKTREAFYPSLFDE 86 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132 L IPYT S +++DK +K+V++S GV + + + +S P ++KP Sbjct: 87 LGIPYTGSDAYTLNVALDKSLTKRVLASYGVATPRARLVNRTTLDSGALDDVSFPVIVKP 146 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIELTCGVMG------ 183 GSS GI L + LL+E Y+ GI++ C + Sbjct: 147 NFEGSSKGIFREWSVCEDAHHLAEVVERQLARFEAGLLVEHYIAGIDVACAFVDGLKEAN 206 Query: 184 ---------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 + + Y + LK++ PA++P + ++ Sbjct: 207 GARSSGTGIPEGVLTPIEFVIDPQVPGSYNVYDFNLKHAKPEQVTRRPAQLPAATIERIR 266 Query: 229 RLAFLAHQAIGCRGISRSDFLFDP-----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + +A+ + +R +F P V +LE++ P + P + AA G Sbjct: 267 AITARVVRALDLKDHARCEFRVTPSASRSQGHDVHFLEVDGLPTLQPGASVFVAAAQRGV 326 Query: 284 SFRELLLWMVEDASCLR 300 F ++ +V A C R Sbjct: 327 DFDGVIRAIVRSA-CKR 342 >gi|255940354|ref|XP_002560946.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585569|emb|CAP93280.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255] Length = 363 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 120/340 (35%), Gaps = 52/340 (15%) Query: 7 GISSE------R--EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAF 55 G S E E+ A +ALE G V+ + ++ +L H DL F Sbjct: 25 GYSEEQCAALPHRGEI-----DAVMAALERLGHHVTLVSGIEALVQLLAAGKHNGWDLVF 79 Query: 56 NVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 N+ G G + V A+LE ++PYT S AL +K +K ++ +P P ++ Sbjct: 80 NMAQGFHGSARESQVPALLEAYQVPYTFSDAATMALCQNKQVTKTILDRHMIPNAPFSVI 139 Query: 114 NR------FTMDSQHLISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGD 164 F L P +KP+ GSS G +K+ + + + G Sbjct: 140 PMLDVVADFPKGFAALPPYPLFVKPVTEGSSKGIDGFNKVKEPADLKPAVWELVRKFPGQ 199 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST------------ 212 +L+E ++ G E T ++G S E ++ + Sbjct: 200 DILVESFLSGREFTVSILGTGPHSRVIGIREHIWRTSPEHSNTNGYHSDGSLDFASRDSK 259 Query: 213 ---------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLE 261 + + K ++A + CR R D FD LE Sbjct: 260 SSKGEKMLLYNDSHDMDEPQIKATCQVALQTWKVFNCRDGGRVDIRFDSDEPGSTPNVLE 319 Query: 262 INVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +N G+ P S P A G SF ELL ++ + C R Sbjct: 320 VNPIAGLLPGHSPLPATAKMNGLSFEELLSEII-GSVCER 358 >gi|20136383|gb|AAM11649.1|AF492457_1 D-alanine:D-alanine ligase [Azospirillum brasilense] Length = 209 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 73/185 (39%), Positives = 117/185 (63%), Gaps = 11/185 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + PY++KP+ GS++G+ ++++ Q+ P +W G++ L+E+++ G ELT G Sbjct: 26 AHPMPAPYIVKPVDEGSTVGVTLVREGQNSP----VGDAWTFGERALVEEFIPGRELTVG 81 Query: 181 VMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 VMG + ++ Y Y KYS+ ++ H +PA+IP + +E +RLA LAH+ Sbjct: 82 VMGGLDGECRPLTVTEIRFEAQVYDYTAKYSAGHAVHTVPAQIPEHVAEEAKRLAVLAHR 141 Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +GCRG+SRSDF +D + +F+LEIN QPGMTP+S+ PE AA G ++ L+ WMV Sbjct: 142 TLGCRGVSRSDFRWDDRKSGTDGLFFLEINNQPGMTPLSLVPEQAASVGLTYGALVAWMV 201 Query: 294 EDASC 298 E+A+C Sbjct: 202 ENAAC 206 >gi|68535999|ref|YP_250704.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] gi|68263598|emb|CAI37086.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] Length = 202 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 11/184 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 Q + P +KP + GSS+GI + ++ + + +H +++++E + G E+ CG Sbjct: 18 QQRLGLPVFVKPARRGSSIGISKVDSWEAFAQAVEIAF--DHDNKMIVESMIHGREVECG 75 Query: 181 VMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 V+ V A FY ++ KY T +PA I + EV+RLA Sbjct: 76 VLQYPEGSVIASAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAV 135 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+ C G++R DF + +V EIN PG TP+S++P+M G + +LL + Sbjct: 136 RTFEALNCEGLARVDFFVT-DNGEVILNEINTLPGFTPISMYPQMFIAGGMEYPQLLDIL 194 Query: 293 VEDA 296 + A Sbjct: 195 IARA 198 >gi|302341653|ref|YP_003806182.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075] gi|301638266|gb|ADK83588.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075] Length = 328 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 12/292 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLE 76 A +AL G + ++ + +LA + DL FN+ G FG + V A+L+ Sbjct: 33 AAIEAALTRLGHQPRRVGGLPELMAALLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHG 92 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 Y S L +L++ K +K+VV G+ +++ ++ ++ P KP+ G Sbjct: 93 QAYVFSDPLTLSLTLHKAMAKRVVRDLGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEG 152 Query: 137 SSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 + G+ K + Q +G +L+E ++ G E T GV+G S + Sbjct: 153 TGRGVEAAGKVGDAAALAAVCQRLLARYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVM 212 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDI-----YKEVQRLAFLAHQAIGCRGISRSDFL 249 E + S ++ + ++ + LA AH+ +GCR SR D Sbjct: 213 EVILLARAEAEVYSYHNKENCEGLVRYELADGPLAQACAALAVAAHRGLGCRDASRVDLR 272 Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + + ++EIN G+ P S P + AG + EL+ +V A R Sbjct: 273 CDE-TGRPHFMEINPLAGLCPGHSDLPILCGLAGMGYDELIEAIVASALARR 323 >gi|319957669|ref|YP_004168932.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511] gi|319420073|gb|ADV47183.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511] Length = 349 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 126/332 (37%), Gaps = 52/332 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +A+L GG S E E+S+ S +L+ +D R L+ Sbjct: 3 IAILFGGSSYEHEISIVSAITLKKSLKRNEPLFIFVDSAREFYLIEPEKMKSKTFSSGEY 62 Query: 47 -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 L+ D N++HG GEDG + ++E IP+ Sbjct: 63 KKAKKLSLERGGFSMAGGLLGGRKPLEFDCLLNLIHGRDGEDGKIAGMMEFFRIPFIGPR 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 + AS +S K+ +K + + G+ V L+ + + P ++KP+ GSS+G+ + Sbjct: 123 LEASVMSYSKLNTKLLAQALGISVLEYELLRKEGPRKLSRLEYPVIVKPVHLGSSIGVSI 182 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202 +++ + L + D +++E +V+G E ++ +++ I P+ + + Sbjct: 183 VREASQLDYALDVAF--EFDDLVIVEPFVEGIREYNLAGCKTSAWELSLIEEPQKEEFLD 240 Query: 203 ELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 K S + +D + + ++ + + + R DF KV+ Sbjct: 241 FDKKYMDFSRDTRVQEAVIDAPLRERLETAFKNIYDPLFLGSLIRCDFFVVEE--KVYLN 298 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 EIN PG +F F ++ + Sbjct: 299 EINPIPGSMAHYLFD--------DFEGIIERL 322 >gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 236 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 12/225 (5%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER+VSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115 GEDG +Q +LELL +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 65 RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++KP + GSS+G+ + ++ ++ L S ++ H D++LIE++ Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + G E T ++G+ L P FY YE KY S + + P Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCP 226 >gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus] Length = 249 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 10/237 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 16 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 75 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G+ + + + + + ++LIEQ Sbjct: 76 VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESAR--QYDSKILIEQA 133 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224 V G E+ C V+G+++ V Y + + +PA + + Sbjct: 134 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 193 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +Q A ++A+GCRG++R D + ++ E+N PG T S +P M A A Sbjct: 194 GRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPRMMAAA 249 >gi|150391473|ref|YP_001321522.1| D-alanine--D-alanine ligase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149951335|gb|ABR49863.1| D-alanine--D-alanine ligase domain protein [Alkaliphilus metalliredigens QYMF] Length = 714 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 19/295 (6%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGEDGLVQAI 71 L G +V + D+++ L +P L FN+ +G G V I Sbjct: 34 IKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVFNLSYGIQGKGRYMHVPGI 93 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 LE+L IPY SG A+++DK+ +K ++ G+P ++++ + + + P ++K Sbjct: 94 LEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVMDKPDSEIKDNLKYPLIVK 153 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 P S G+ ++ ++ + + L+E+Y++G E+ G++G+ ++ Sbjct: 154 PKDEAVSFGLKIVHNEEELRDGVKTIYE-AFNTPTLVEEYIEGREINVGLLGNNPVEAMP 212 Query: 192 IAVP------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + Y + S + PA + + +++++LA A+GC +R Sbjct: 213 PVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQIKQLAIDTFNALGCYDSAR 272 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 DF D + LE+N + F A G + L+ +++ +C R Sbjct: 273 VDFRLDQEGN-PYILEVNSMASLGKSGSFVYAAEKMGLDYVALVNRLIDV-TCER 325 >gi|157375059|ref|YP_001473659.1| D-alanyl-alanine synthetase A [Shewanella sediminis HAW-EB3] gi|189083056|sp|A8FUK8|DDL_SHESH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157317433|gb|ABV36531.1| D-alanine--D-alanine ligase [Shewanella sediminis HAW-EB3] Length = 333 Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 117/310 (37%), Gaps = 36/310 (11%) Query: 11 EREVSLSSGKACASALED-AGFKVSQIDVD------------------RSVGLVLAHLKP 51 E +SL S ++L D GF V ++++D + + +P Sbjct: 16 EHAISLLSANFFETSLADITGFNVLRVELDADGHYHTKDGDICELTNRKQIRFEDESKRP 75 Query: 52 ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ EL+ +PY AS +K+ +K S+ G+P Sbjct: 76 WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKVTAKMWFSALGIPNT 135 Query: 109 PSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P I +N F D IK GSS+G + + L ++ ++ Sbjct: 136 PYIFLNEFNDDAISQTEQALETWGSVFIKAASQGSSVGCYRVDSIDELASSLKEAF--SY 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-----PA 217 +++E+ + EL V + + + A Sbjct: 194 SPYVVVEKTIHARELEVAAYELDGEIVATKPGEIICASNTFYTFDEKYAADSQAETKVEA 253 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 I ++ +E++ A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 254 DISDELSREIREYAVKVFKGMKLSHLSRIDFFLTDE-NEILLNEINTFPGLTPISMFPKM 312 Query: 278 AAYAGYSFRE 287 G F E Sbjct: 313 LQNHGDDFTE 322 >gi|256829554|ref|YP_003158282.1| D-alanine--D-alanine ligase domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578730|gb|ACU89866.1| D-alanine--D-alanine ligase domain protein [Desulfomicrobium baculatum DSM 4028] Length = 331 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 14/297 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71 S + +A AL G +V + + LA + D+ FN G G + V A+ Sbjct: 28 SPVTVEAIRQALASQGHEVELVGGVMPLARALADGRRWDMVFNFAEGMRGLAREAQVPAL 87 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 L+ +IPYT SG ALS+ K + V+ + GVP +VN + P +K Sbjct: 88 LDAWDIPYTFSGPEVLALSLHKGWTNAVLRAHGVPTADFRIVNSVEEVDAIDLPFPLFVK 147 Query: 132 PLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 P+ GSS ++K + D+ L+E ++ G E T G++G Sbjct: 148 PVAEGSSKGVSDKSLVKDRWEL-RDICAHVLKTFHQPALVETFLPGREFTVGILGSGPQC 206 Query: 189 VTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + D +Y L D + +A A QA+GC Sbjct: 207 RVLGVMEVLATARGDACAYTYANKQEWRERALYELAGDDRAAQAAEVARAAWQALGCLDA 266 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R D D + ++E+N G+ P S P + G + EL+ +++ A Sbjct: 267 GRIDVRLDAQ-GQPRFIEVNPLAGLNPESSDLPILCGKIGLGYDELIASIMDSAMAR 322 >gi|148269503|ref|YP_001243963.1| methyltransferase type 11 [Thermotoga petrophila RKU-1] gi|281411779|ref|YP_003345858.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10] gi|147735047|gb|ABQ46387.1| Methyltransferase type 11 [Thermotoga petrophila RKU-1] gi|281372882|gb|ADA66444.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10] Length = 637 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 25/300 (8%) Query: 21 ACASALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73 +AL G+ S +D ++ L LK D FN+ F D +A + E Sbjct: 332 QMKAALRSLKGYNFSYLDNHDTLITDLMKLKGKIDYVFNLCDEGFNNDPRKEAHVPALLE 391 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 +L IPYT SG L DK + + G+PV ++ + + P ++KP Sbjct: 392 MLGIPYTGSGPQTLVLCYDKSLIRGIAREMGIPVPRAVFIKPEDTTFELPFPFPAIVKPN 451 Query: 134 KGGSSL---GIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 G SS V+ + + + + + + +L+E+++ G +L+ G++G+ Sbjct: 452 FGDSSFGITQKSVVYTPEELINAVSEIRNKFGYDKPVLVEEFLTGKDLSVGIIGNPPDSY 511 Query: 190 TEIAVPKSDF----------YSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + D+ YE K+ S + +PA +P + K + + Sbjct: 512 MVLPIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSIPADLPEETEKFIIDCCLKLFE 571 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + CR R D+ D LE+N PG +MA AG S+ E+L +++ A Sbjct: 572 RLECRDYCRFDWRLDAEGN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYAEMLGAILKAA 630 >gi|308272544|emb|CBX29148.1| hypothetical protein N47_J01290 [uncultured Desulfobacterium sp.] Length = 335 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 120/287 (41%), Gaps = 12/287 (4%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAILELLEI 77 A AL D G+K +I +++ L+ + D+ FN+ G FG + + AIL+ +I Sbjct: 34 AIEKALSDLGYKTERIGHIKNLVKYLSQGKRWDIVFNIAEGCFGAGREAQIPAILDAYKI 93 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 YT S L +L+++K +K +V + G+ LV + + + P +KP+ G+ Sbjct: 94 AYTFSDPLVLSLTLNKAVTKLIVQNLGIATPAFALVEKLSDIDSISLPFPLFVKPVAEGT 153 Query: 138 SLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193 GI ++ ++ L+E ++ G E T G++G Sbjct: 154 GKGISAASKTTNKDDLYNVCFDLLDRFKQPALVETHLPGREFTVGIIGTGEKARVAGVIE 213 Query: 194 ---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++ SY V + ++ ++A A + C R D Sbjct: 214 VLLNEHAEGDSYSYINKKKYEELVSYRLADDKMARDTAKVALDAWVGLKCLDAGRIDIRS 273 Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 D ++ ++E+N G+ P S P + +G S++EL+ +++ A Sbjct: 274 D-VNGYPNFIEVNPLAGLHPIHSDLPILCRLSGISYKELIDEIMKSA 319 >gi|218672834|ref|ZP_03522503.1| D-alanine/D-alanine ligase [Rhizobium etli GR56] Length = 289 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 16/263 (6%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+ F VLHG GEDG VQ + ++ +P GIL SA ++DK +K+++ + G+PV + Sbjct: 28 IDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARA 87 Query: 111 ILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 + ++ T S + + P IKP++ GSS+G+ + Q L ++ H L Sbjct: 88 VTIHEGTTPSLAALEGELGLPLFIKPVRQGSSVGVAKVHASQEFAGALAEAF--RHDRTL 145 Query: 167 LIEQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 L E+++ G E+ V+ + A + + +PA++ Sbjct: 146 LAEEFIAGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKYIDETGAALKVPAEL 205 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P ++ ++ A A +A+GC G++R DF + E+N PG T +S++ + A Sbjct: 206 PPEVEAAMRDAAAEAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAMA 264 Query: 280 YAGYSFRELLLWMVED--ASCLR 300 +G S+ E++ +VE A R Sbjct: 265 ASGVSYAEVIDRLVEHGMARAGR 287 >gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 937 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V + D++++E +++ G C + Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + F + T+ P + P+ + K ++ A L Q Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379 Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +G R +R D + S + + +IN+ GM S + A+ Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439 Query: 282 GYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 440 GFSHSNILRTIVHRA-CSR 457 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 P + + + ++ L + +G G SR D + +V +E+N PGMTP + Sbjct: 847 PPPPTIMSKEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPST 906 Query: 273 IFPEMAAY 280 + + A Sbjct: 907 VLIQQALA 914 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514 >gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 845 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V + D++++E +++ G C + Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + F + T+ P + P+ + K ++ A L Q Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379 Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +G R +R D + S + + +IN+ GM S + A+ Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439 Query: 282 GYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 440 GFSHSNILRTIVHRA-CSR 457 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514 >gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana] gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana] gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana] gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana] Length = 519 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V + D++++E +++ G C + Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + F + T+ P + P+ + K ++ A L Q Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379 Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +G R +R D + S + + +IN+ GM S + A+ Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439 Query: 282 GYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 440 GFSHSNILRTIVHRA-CSR 457 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514 >gi|127513061|ref|YP_001094258.1| D-alanyl-alanine synthetase A [Shewanella loihica PV-4] gi|189083052|sp|A3QEV1|DDL_SHELP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|126638356|gb|ABO23999.1| D-alanine--D-alanine ligase [Shewanella loihica PV-4] Length = 334 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 113/316 (35%), Gaps = 36/316 (11%) Query: 11 EREVSLSSGKACASALEDAGF-KVSQIDVD---------------------RSVGLVLAH 48 E +SL S ++L V ++++D R LA Sbjct: 16 EHAISLLSANYFETSLAKLPHLNVLRVELDAKGQYQSKSGERCELTNRREIRFEDESLAP 75 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ EL+ +PY S +K+ +K S+ G+P Sbjct: 76 WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAKMWFSALGIPNT 135 Query: 109 PSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P + +N+ +K GSS+G + IP L + + Sbjct: 136 PYLFLNQLDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDAAQIPAILADAFH--Y 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI--- 219 +++E+ + EL V V + Y + Sbjct: 194 SPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYAADSKATTKVVA 253 Query: 220 --PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +I ++++ A + R +SR DF P ++ EIN PG+TP+S+FP+M Sbjct: 254 EVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTPE-GEILLNEINTFPGLTPISMFPKM 312 Query: 278 AAYAGYSFRELLLWMV 293 A G F + L + Sbjct: 313 LANHGDDFSQYLNEAI 328 >gi|325925852|ref|ZP_08187221.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] gi|325543683|gb|EGD15097.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118] Length = 246 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 6/197 (3%) Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 V + P +KP GSS+G+ ++ L + + Sbjct: 36 PFVCFNRHTAAMADVEALIAQLGLPLFVKPANQGSSVGVSQVRSADQFAAALALAL--AY 93 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKI 219 ++L+E + G E+ C V+G+A+ + Y + ++ V+PA I Sbjct: 94 DHKVLVEAAIAGREIECAVLGNATPQASVCGEVVVHDAFYSYQTKYISEHGAEIVIPADI 153 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + +Q++A A+QA+ C G++R D ++ E+N PG T +S++P++ Sbjct: 154 DARTQQRIQQIAVQAYQALDCAGLARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQ 212 Query: 280 YAGYSFRELLLWMVEDA 296 +G +R L+ ++E A Sbjct: 213 ASGLDYRSLITRLIELA 229 >gi|195940920|ref|ZP_03086302.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. EC4024] Length = 147 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 4/133 (3%) Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDI 223 ++EQ ++G E+ C V+G+ + + Y ++ V+PA + D+ Sbjct: 1 MVEQGINGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVPAALDPDV 60 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 ++ +A A QA+GC G++R D P +V EIN PG T +S++P++ +G Sbjct: 61 NDRIRAIAIEAWQALGCSGMARVDVFLTP-DNEVVINEINTLPGFTNISMYPKLWQASGI 119 Query: 284 SFRELLLWMVEDA 296 S++EL+ ++E A Sbjct: 120 SYQELITRLIELA 132 >gi|307322535|ref|ZP_07601881.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891817|gb|EFN22657.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 332 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 19/293 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVLHG--NFGEDGLVQ 69 + +AL++ G + + D+ + L P + FN+ G V Sbjct: 33 EGVVAALQEGGHETLLCEGDKGLLTTLERFMPTNPQGRPSGIVFNLAEGIQGECRCTHVP 92 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A+LE+ +PYT SG L AL++DK+ +K+++ CGVP ++ R T + P V Sbjct: 93 AMLEMAGVPYTASGPLGHALTLDKVITKRLLRDCGVPTPNFRVMRRGTESI-GDLRFPLV 151 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP SLG+ ++ + + + + + L+E+Y+DG E+ ++G+ LDV Sbjct: 152 VKPRLEDCSLGLQLVHEPAQLRQAVEAIVT-QYKQDALVEEYIDGREIAVALLGNEELDV 210 Query: 190 TEIAVPKSDFYSYELKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + L + + PA+I I ++ ++ A +A CR Sbjct: 211 FPLVEHDFGDRETRLMTREAKYVANAMPPQICPAQIGSGIEAVLRDISVAAFRACQCRDY 270 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +R D D + F LEIN PG++ S + AGYS L+ +++ A Sbjct: 271 ARVDLRVDRF-GQPFVLEINPLPGLSMSSSYVLAGMTAGYSLTSLVNRILDVA 322 >gi|218886343|ref|YP_002435664.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757297|gb|ACL08196.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 408 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 128/384 (33%), Gaps = 89/384 (23%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46 +AV GG S E +VS+ +G AL+ A ++ + VDR Sbjct: 8 VAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYIPAR 67 Query: 47 -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75 + D+A HG +GEDG +Q + E + Sbjct: 68 DADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQGLFEAV 127 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLIS 125 IPYT +LASA+ MDK +KQ ++ G+P+ P + + I+ Sbjct: 128 GIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAALAGIT 187 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----------QSSSWNHGDQLLIEQYVDGI 175 P +KP GSS+G+ + + I L + + I DG Sbjct: 188 LPGCLKPAHLGSSIGVAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISVRRDGE 247 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST------------------HVLPA 217 + D + + S S + Sbjct: 248 GHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLTREINP 307 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +P + ++ A + A G G R DF++D +V+ E+N PG S + Sbjct: 308 DLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG----SFAFFL 363 Query: 278 AAYAG--YSFRELLLWMVEDASCL 299 A F LL M+++A + Sbjct: 364 WEAAESPIRFTRLLSLMIDEARAM 387 >gi|317150914|ref|XP_003190466.1| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40] Length = 361 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 125/339 (36%), Gaps = 50/339 (14%) Query: 7 GISSE------REVSLSSGK--ACASALEDAGFKVSQIDVDRSVGLVLAH---LKPDLAF 55 G S E SG+ + + L + G V+ + +S+ LA DLAF Sbjct: 23 GYSEEECAALPH-----SGETGSVLTTLRELGHHVTLVPGVQSLVKHLAAGTYKDWDLAF 77 Query: 56 NVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 N+ G G V A+L+ ++ YT S AL +K+ +K +++ +P P ++ Sbjct: 78 NIAQGFHGSSREAQVPALLDAYQLLYTFSDAATMALCQNKVHTKIILAHHNIPTAPFSVI 137 Query: 114 NRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGD 164 +R + L P +KP+ GS GI K + + + S Sbjct: 138 SRKDQNLRLENLDNMLSHYPLFLKPVIEGSPKGIDRFNKVTEPAELESAVKKLRSIFPDQ 197 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY------------------ 206 +L+E ++ G EL+ ++G + + Sbjct: 198 DILVEPFLSGRELSVSILGTGVQSCVVGVTGFLWQNPFSDRNGENESSSSLEFASRKSKS 257 Query: 207 --SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEI 262 +++ P + K ++A A +++GCR R D F D LE+ Sbjct: 258 SDANMLVVRHDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLEL 317 Query: 263 NVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 N G+ P S P A G ++ LL +++ A + Sbjct: 318 NPISGLLPGHSPLPSSAEENGLPYKRLLAAIIQSALTRK 356 >gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 281 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 143/282 (50%), Gaps = 19/282 (6%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V +DVD ++ L ++PD+ + ++HG+ GEDG +Q++LEL+ +PY + A ++ D Sbjct: 3 VKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASD 62 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIKPLKGGSSLGII 142 K + V+S+ G+ V S+ + + + P V+KP +GGS+LG+ Sbjct: 63 KAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVT 122 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEIAVPKSDFY 200 ++ +P ++ + ++ +EQY++G + ++ G + + + Y Sbjct: 123 IVASAAGLPRAMVDCF--AYDERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAADGPY 180 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 Y+ +Y + + + +PA++ + V+ A AH +G R +SR+D + D + + L Sbjct: 181 DYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDA-GRAWIL 239 Query: 261 EINVQPGMTPVSIFPEMAAY----AGYSFRELLLWMVEDASC 298 ++NV PGMT S+FP+ A + + +L + ++ A Sbjct: 240 DVNVAPGMTETSLFPQAATADALESDTTVDDLYVEILNAALT 281 >gi|256371402|ref|YP_003109226.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331] gi|256007986|gb|ACU53553.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331] Length = 369 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 67/349 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG--------------FKVSQ----------- 35 + V GG S E ++S+ +G AL ++G ++V Sbjct: 6 VGVCFGGPSPEHDISILTGLQALRALAESGGSPVAIYWSKEGSFYRVEPSLEAEAYAGGV 65 Query: 36 -----------------IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ + L+ D+ N HG GEDG +Q L+L + Sbjct: 66 PAGARPLELVVGRDGGFVEPRGGLRPKRELLELDVVVNCCHGGPGEDGALQGALDLAGVR 125 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 YT +AL MDK ++ + I + PY+ KP GGSS Sbjct: 126 YTGPSARTAALGMDK------LAFASLLRHHGIACLPREDGRRVTFDGPYIAKPRFGGSS 179 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS- 197 +GI V++ + +Q S ++ D +++ + + ++ I P Sbjct: 180 IGIEVLEDRAQL-EARMQRSEHFRDGMVVEPYRPDLMDVQVALRRFPTPTLSAIERPLRS 238 Query: 198 --------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 Y+ + LPA I ++ + ++ LA + + RG+ R DF Sbjct: 239 APGEPILTYREKYQPIGGMATAPRELPAAIAPELAETIRSLALSVGELLDSRGVMRVDF- 297 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIF--PEMAAYAGYSFRELLLWMVEDA 296 + + E+N PG +F P+ F L + +A Sbjct: 298 LASTEGECYVNEVNTIPGSLSHYLFVEPK------IPFAAQLEADIREA 340 >gi|282897350|ref|ZP_06305352.1| D-ala D-ala ligase [Raphidiopsis brookii D9] gi|281198002|gb|EFA72896.1| D-ala D-ala ligase [Raphidiopsis brookii D9] Length = 336 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 16/287 (5%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80 + L D G +V +I + L + + DL FN+ G + V A+ EL + YT Sbjct: 39 NTLNDLGHQVERIGNGGELTRKLVNGDRWDLVFNIAEGIKGRSREAQVPAVCELFDQAYT 98 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 S L AL++DK +K++V G+P P I++N + + P KPL GSS G Sbjct: 99 FSDPLTCALTLDKALTKRIVRDRGLPTAPFIVINNIVEIANINLPLPLFCKPLSEGSSKG 158 Query: 141 ---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVMGDASLDVT 190 ++K + + Q+ +L+E ++ G E+T ++V Sbjct: 159 ITGQSLVKDKAELFN-ICQTLYNQFQQPILVETFLPGREITVGIIGNGSQAKVVGIMEVI 217 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 ++D Y+ K L+ P + + ++LA + +GCR +R D Sbjct: 218 FTDKAETDSYTTLNKQEYLDRIAYQLITNPEPLAIQAEQLALEVYYLLGCRDAARLDLRC 277 Query: 251 DPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 D + + +LEIN PG+ + S P M AG S+ E++ +V+ A Sbjct: 278 DA-NGVLHFLEINPLPGLDYIYSDLPIMGRLAGISYTEMVNAIVDAA 323 >gi|291286723|ref|YP_003503539.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] gi|290883883|gb|ADD67583.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 14/291 (4%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG--NFGEDGLVQAILELLEI 77 A +AL + G V +I ++ LA K DL FN+ G G + LV +L+ I Sbjct: 38 AIETALCECGHSVERIGNYFALHKKLAAQKSWDLVFNIAEGLYGMGRESLVPCVLDAYGI 97 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG- 136 YT S LA +L++ K +K ++ CGV +VN + P KP G Sbjct: 98 NYTFSDPLAISLTLHKGMAKHILKGCGVATADFAVVNNLGDIDSINLGFPLFAKPAAEGT 157 Query: 137 --SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 ++ + + + +L+E+ ++G E T G++G S V+ + Sbjct: 158 GKGISDRSIVWNSADLKR-VCTELLVRYSQPVLVEKLLEGREFTVGIIGSGSEAVSVGVM 216 Query: 195 PKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 Y + + + + + D +A A++A+GCR R D Sbjct: 217 EILPRNKEGIFVYSYENKENCESLLDYSLVYGDTADRCADVALRAYRALGCRDAGRVDVR 276 Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 D +E+N PG+ P S P + AG S+R+L+ + A Sbjct: 277 LDG-DGIANVIELNPLPGLHPTHSDLPMIWTKAGMSYRQLICSIAAKAKAR 326 >gi|225850791|ref|YP_002731025.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1] gi|225645232|gb|ACO03418.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1] Length = 325 Score = 99.2 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 13/285 (4%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHG--NFGEDGLVQAILELLE 76 A AL G V D + + L + FN+ +G + ++LE+L Sbjct: 34 IADALRKKGHYVEIADGNIEIIDRLKEFFSKGKGIVFNLSYGIQGEDRYAHIPSLLEMLG 93 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 +PYT S L++DK +K ++ +P + + D ++ P ++KPLK Sbjct: 94 VPYTGSSPEGHTLALDKAVTKILLKYYDIPTPDFHVFSPSDHDFSNVR-FPAIVKPLKEA 152 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SLGI V+K + + + + H D ++E+++ G E + G++G+ T + Sbjct: 153 LSLGITVVKDTDQMKKAVSRITEEFHQD-AIVEEFIRGREFSVGLIGNDEDVETLPVLEF 211 Query: 197 SDFYSYELKYSSLNSTH-----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + ++ H + PA IP K +Q L+ +G R +R+D D Sbjct: 212 DFGGDPDAIQTTYLKRHKPIEKICPADIPEKTAKRMQELSKKVFHVLGLRDYARTDIRMD 271 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 ++ LEIN Q + F A AGY++ +L+ ++ A Sbjct: 272 LEGN-IYILEINSQASLGETGSFVTAAKTAGYTYEDLIEKILNTA 315 >gi|330874974|gb|EGH09123.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 154 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + ++ + Q+L+EQ++ G E T + L + P S Y Y+ Sbjct: 1 MNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFTVASLRGQVLPPIGLGTPHSF-YDYD 57 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 KY + ++ + +P + +E+++LA A AIG G +R+D + D K + LE+N Sbjct: 58 AKYLASDTQYRIPCGLGDAQEQELKQLAARACDAIGIAGWARTDVMQDAQ-GKFWLLEVN 116 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 PGMT S+ P A AG F++L+L ++ D+ R Sbjct: 117 TVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQAR 153 >gi|301167561|emb|CBW27144.1| putative D-alanine--D-alanine ligase [Bacteriovorax marinus SJ] Length = 336 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 114/296 (38%), Gaps = 22/296 (7%) Query: 22 CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75 AL + G KV V + L+ + KP + FN+L G D V + LELL Sbjct: 35 VIKALNNLGHKVEICGVISDLKLIKNAIDKFKPTVIFNLLEEFDGEVLFDQNVVSYLELL 94 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134 +PYT L+ DK +K+++ + + + + P ++K L Sbjct: 95 RVPYTGCNPRGLMLARDKALAKKILLFHRIKTPHFQVFPKNRKVKTSKHLKYPLIVKCLT 154 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 +SL I ++ + ++ + G ++E++++G E GVMG+ + Sbjct: 155 EEASLAIAKASIVYNEEKLKERVKYINQKIGVDAIVEEFIEGREFYVGVMGNYKTQTLPV 214 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIP------------LDIYKEVQRLAFLAHQAIGC 240 K + K N ++ +++ + ++ + Sbjct: 215 WELKFENVEKPEKELYSNRAKWNNKYRDRKGIKTEAATLSPELELKIKNICKKVYKHLNL 274 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G +R D +P +V+ +E+N P + A ++ ++ +L+ +++ A Sbjct: 275 NGYARVDLRMNPA-GEVYVIEVNPNPNIAREDELASSALHSKVNYEQLITKILKLA 329 >gi|544147|sp|P35660|DDL_ANACE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|142171|gb|AAA22065.1| D-alanine:D-alanine ligase [Anaplasma centrale] Length = 205 Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S EREVSL+ GK A AL G + + +D++R L + PDL +N LHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG +L++L + YTHS + AS++ MDK+ +K V+ S G+ ++ + + S Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134 Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQS 149 + P+VIKP+ GGS++G+ I Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSE 164 >gi|149194598|ref|ZP_01871694.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2] gi|149135342|gb|EDM23822.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2] Length = 341 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 116/331 (35%), Gaps = 53/331 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGF-------KVSQIDVD--------------- 39 A++ GG S E E+S+ S L F ID D Sbjct: 4 ALIFGGSSFEHEISIVSAITIKDKLNIKYFIFLDSNRDFYLIDKDNMKSKYFASGEYKNS 63 Query: 40 -------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + + L D+ N++HG GEDG + A+LE +I + A Sbjct: 64 IKLEITKGGFKYKKGLLKKEFFLDFDVVINLIHGRDGEDGKIPAMLEFYKIKAITPNVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 ++S +K+ +K V V ++ + P +IKP + GSS+G+ + K Sbjct: 124 CSVSYNKVLTKAYAKEMRVNVIEYEII----DSPKTKFDFPVIIKPARLGSSIGVSIAKN 179 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--EL 204 + + D +++E +++GIE A + + K + + Sbjct: 180 QDELNYAFDVAR--EFDDLIIVEPFIEGIEEYNLAGCKAGDEWIFSKLEKVEKKEFLDFD 237 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K S + L+I ++ + + I + R DF ++ EIN Sbjct: 238 KKYMDFSRKEVKINENLEIKEKFKTEFKKIYNNIFKNALIRCDFFC--KDDIIYLNEINP 295 Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 PG +F F+ ++ + + Sbjct: 296 IPGSMANYLFD--------DFKNVIDKLAKS 318 >gi|268679679|ref|YP_003304110.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946] gi|268617710|gb|ACZ12075.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946] Length = 344 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 129/331 (38%), Gaps = 50/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA------GFK--VSQIDVDRSVGLVL------ 46 +AVL G S E E+S+ S A L+ ++ I D+ Sbjct: 3 IAVLFGAQSFEHEISVVSAIALKKVLKSEIVYIFCDYERNFYLIPTDKITSKRFSSGEYK 62 Query: 47 --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+ N++HG GEDG + A+L+ IPY + A Sbjct: 63 KDKALHVKQGGFYAKKMLGEEQISFDVMINLVHGRDGEDGKLSALLDFFGIPYIGPRMEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 ++S +K+ +K GV V P + + I+ P+++KPL+ GSS+GI ++K+ Sbjct: 123 CSISYNKLFTKLYAKEVGVNVLPY-QLLHKGSNEAISIAYPFIVKPLRLGSSIGIGIVKE 181 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + L ++ D +LIE ++ G E S + I P+ + + K Sbjct: 182 EKELAYAL--DVAFEFDDTVLIEPFISGVKEYNLAGCKTDSFTFSIIEEPQKEAFLDFDK 239 Query: 206 YSSLNSTHVLPAKIPLDIY--KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 S + L++ KE+Q + + + R DF + V+ EIN Sbjct: 240 KYLDFSRTKRVNEASLEVTLEKEIQTSFIKLYDPLFLGALIRCDFFV--IDGVVYLNEIN 297 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 PG +F F ++ +V Sbjct: 298 PVPGSMANYLFD--------DFDGVIKRLVN 320 >gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana] Length = 516 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 77 VGLICGGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 136 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 137 DFKLESLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRE 196 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 197 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 256 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V + D++++E +++ G C + Sbjct: 257 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 316 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + F + T+ P + P+ + K ++ A L Q Sbjct: 317 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 376 Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 +G R +R D + S + + +IN+ GM S + A+ Sbjct: 377 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 436 Query: 282 GYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 437 GFSHSNILRTIVHRA-CSR 454 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 486 VIFGGDTSERQVSVMSGTNVWVNLQR 511 >gi|57167797|ref|ZP_00366937.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228] gi|57020919|gb|EAL57583.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228] Length = 346 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 47/327 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------- 40 A+L GG S E E+S+ S + D + I ++ Sbjct: 4 AILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQK 63 Query: 41 -------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +L D N++HG GEDG + ++LE +I + + AS Sbjct: 64 EKELFLRQKAFYHKSLWSEKNLNLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEAS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 LS +K +K S GV ++ + P ++KP + GSS+GI + K + Sbjct: 124 VLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQD-FTAHFPCILKPARLGSSIGISIAKNE 182 Query: 148 QSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + + C + + + E K + Sbjct: 183 KELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPRKKEFLDFKQKY 242 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 243 LSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFIL--DNEVYLNEINPN 300 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG +F F +++ + Sbjct: 301 PGSLANYLF--------KDFNKIIEQL 319 >gi|325981999|ref|YP_004294401.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] gi|325531518|gb|ADZ26239.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212] Length = 361 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 108/285 (37%), Gaps = 11/285 (3%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEI 77 A A+ALE G V IDV + + L K DL FN G ++ + E Sbjct: 32 AAVATALERVGADVEVIDVGKDIYHQLEKRKHQIDLVFNNAEGLEEKELREAIVPFFCEH 91 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLKGG 136 + ++KM P+ D ++ P ++KP G Sbjct: 92 LGIPYTGSSPKTFINKMDKATAKRIVAYEGVPTAKFQLMVPGDQLKDLTFPLMVKPYSEG 151 Query: 137 ---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 + + + + S L+E+++ G E T G++G+ L + EI Sbjct: 152 TSIGISQKSKVHNEAELTAAIAAVYSQC-DQAALVEEFLPGTEYTIGLIGNYVLPILEIN 210 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 + + + + + D + ++A AH+A+ R +R DF Sbjct: 211 FANIPGHPQLRDPHVKSIENPYISHMAWTDQARNFAKMAIAAHEALEARDYNRMDFRVRE 270 Query: 253 LSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 ++++LE NV PG+ P + M + G + ++++ +V+ A Sbjct: 271 --GQLYFLEANVIPGIHPTDADLTNMCRHVGIAHQDMVALIVDKA 313 >gi|213024194|ref|ZP_03338641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 77 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A +A+GC G R D + D + + LE N PGMT S+ P A AG SF +L++ + Sbjct: 14 QAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 72 Query: 293 VEDA 296 +E A Sbjct: 73 LELA 76 >gi|325168553|ref|YP_004280343.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3] gi|325064276|gb|ADY67965.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3] Length = 234 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 10/182 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +KP + GSS+G+ + +Q L + H +LL E+++ G E+ C Sbjct: 49 EIALGLPLFVKPARQGSSVGVRKVSGNQEFAPALAEGF--KHDRKLLAEEFIRGREIECS 106 Query: 181 VM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 V+ + A + + +PA++P ++ +++ A L Sbjct: 107 VLEDAKGGLFVSRPGEIIPAESHGFYSYDAKYIDDDGAALTVPAELPPEVETKIRETAAL 166 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 A +A+GC G++R DF E+N PG T +S++ + A +G S+ E++ +V Sbjct: 167 AFRALGCDGMARVDFFLTE-DMAFLVNEVNTIPGFTDISMYAKAMAASGVSYPEVIDRLV 225 Query: 294 ED 295 E Sbjct: 226 EH 227 >gi|260461867|ref|ZP_05810113.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|319785391|ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032508|gb|EEW33773.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] gi|317171279|gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 340 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 13/287 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHG--NFGEDGLVQ 69 ++ +AL++ G + D D+ + L PD + FN+ G + V Sbjct: 32 ESVVAALQEGGHETLICDGDKGLLATLERFMPPDRQSRPSGIVFNLAWGSQGERPEAGVP 91 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129 A+LE+ +P T G L L+ DK+ K+++ GVP ++ T + + P V Sbjct: 92 AMLEMAGVPCTGPGPLGYGLAFDKVIIKRLIRDRGVPTPNFRVMRLGTETT-GDLRFPLV 150 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 +KP +S G+ + + + + + + L+E+Y+DG E+T ++G+ L+V Sbjct: 151 VKPRYECASFGLQLAHEPAQLRQAVEVIVT-LYAQDALVEEYIDGREITVALLGNRELEV 209 Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + + P +I + +Q ++ CR +R D Sbjct: 210 LPLVEYDFRDREKRCLTREAKQRRICPGQIGSRLATVLQDISVATFLECQCRDYARVDLR 269 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D S + F LEIN P + + + A AGY+F L+ +++ A Sbjct: 270 ID-RSGQAFVLEINNMPSLRMRASYVLAARTAGYTFSSLVNRILDVA 315 >gi|296128393|ref|YP_003635643.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] gi|296020208|gb|ADG73444.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109] Length = 333 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 126/322 (39%), Gaps = 49/322 (15%) Query: 1 MAVLMGGISSEREV--------------SLSSGKACASALEDAGFKVSQIDVDRSVGLV- 45 +AV+ GG ++E +V S V ++ V R Sbjct: 20 VAVVGGGANAEHDVSLASAAAVRAALTPS---------------HDVVELTVARDGSWWS 64 Query: 46 ----LAHLK-------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 L + D+ +HG GEDG + A+ +L + SG+ A A+ MDK Sbjct: 65 GGDALTFAQAVGLVAACDVLLPAVHGPRGEDGTLAALADLAGVACVGSGVRAGAVGMDKW 124 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 +K V ++ GV V LV P V+KP+ GSS G+ + + L Sbjct: 125 VTKLVAAAVGVAVADGRLVRGVAEACADPR-LPAVVKPVSSGSSHGVRRVDTVE--DLAD 181 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS---YELKYSSLNS 211 +++ D++L+E+ V G E+ V+ A + ++ Sbjct: 182 AVAAALELDDRVLVEEVVTGREIDVAVLRRADGTTLVSPALEIGHAGAVFDTATKYDGSA 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 V+PA + + + A A+GC G++R+DF E+N PGMT Sbjct: 242 RFVVPAPLEPADAEALAAAALSVVDALGCDGVARADFFLTARG--PVLNEVNTMPGMTAH 299 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S P M A AG ++ EL+ +V Sbjct: 300 SQVPVMLAAAGLTYAELVAELV 321 >gi|168699147|ref|ZP_02731424.1| D-ala D-ala ligase [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 29/311 (9%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71 S ++ KA A L G V+ + R++ L + PDL FN G + + V A+ Sbjct: 21 SPATVKAIADVLASLGHTVALLGDGRALIESLLNAPPDLVFNFAEGAGVSRSREARVPAV 80 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMD 119 E+L +PYT S A A+++DK ++++ S G+ V I Sbjct: 81 CEMLGVPYTGSDPFALAVALDKDATRRLAESYGLTVPKGITLAPVAGEYDGDFAEFAPAL 140 Query: 120 SQHLISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ P + KP GSS G +I + N+ +L+E+Y+ G E Sbjct: 141 EDAGLTLPVIAKPTCEGSSKGIRGKCLITSAAEFGPAV-VELWRNYQQPVLVEEYIAGDE 199 Query: 177 LTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNST-----HVLPAKIPLDIYKEVQR 229 +T G+ G VPK S+ + +V PAK+P ++ ++ Sbjct: 200 ITIGLYGSDPPQPIGVMQIVPKQSPESFVYSLEVKRNWADAVDYVAPAKLPREVLHAIEA 259 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFREL 288 A + +GCR ++R DF ++LEIN PG+ P S +A G ++ EL Sbjct: 260 DAMALYAGLGCRDVARLDFRV--RDGVPYFLEINPLPGLNPDSGDLCYLAYRMGLTYPEL 317 Query: 289 LLWMVEDASCL 299 + +++ A+ Sbjct: 318 IGLILDSAAAR 328 >gi|296272621|ref|YP_003655252.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299] gi|296096795|gb|ADG92745.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299] Length = 344 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 117/311 (37%), Gaps = 42/311 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 +A++ GG S E E+S+ S A ++ + +D +R + Sbjct: 3 IAIVFGGSSYEHEISIVSAIAMKDVIKSE-LEYIFLDENREFYHIPTKTIKSKLFSTGEY 61 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 +++ D+ N++HG GEDG V ++ E +I Y + Sbjct: 62 KKCDKLNIKKGGFSKKAMFGEKNVEFDIVLNLIHGGDGEDGTVASLFEFFDIKYIGPRVG 121 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A ++S +K +K SS G+ P +F S P ++KP+ GSS+G+ ++K Sbjct: 122 ACSVSFNKFLTKGYASSLGIKTIPYKYFTKFDEISVDE--FPVIVKPVTLGSSIGVSIVK 179 Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + + L + +++ + + + + + + E + Sbjct: 180 TKEELSYALDVAFEFDNAVLIETFVPNIKEYNLAGYKIGNEIKYSIIEEPQKADFLDFDK 239 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 + V A I ++ +++++ + + R DF + +V+ EIN Sbjct: 240 KYLDFARTERVSVANISDELKEKLKKAFATIYNTTFNDAMIRCDFFV--IDDEVYLNEIN 297 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 298 PIPGSMANYLF 308 >gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp. lyrata] Length = 943 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 79/378 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 81 VGLICGGPSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF 140 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 141 DFKLESLAQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRE 200 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 201 CIRAFDKYEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKA 260 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V ++ D++++E +++ G C + Sbjct: 261 GSSIGVKVAFGVNDSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVV 320 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + + F + T+ P + P+ + K ++ A L + Sbjct: 321 LMPTEVQLQFHGSGDLQENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKK 380 Query: 238 IGCRGISRSDFLFD---------------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +G R +R D + P S + + +IN+ GM S + A+ G Sbjct: 381 LGLRDFARIDGWYLAPNSNLSSASETLGGPESGDIIFTDINLISGMEQTSFLFQQASKVG 440 Query: 283 YSFRELLLWMVEDASCLR 300 +S +L +V A C R Sbjct: 441 FSHSNILRTVVHRA-CSR 457 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 P + + + ++ L + +G G SR D + +V +E+N PGMTP + Sbjct: 853 PPPPTIMSKEALERCKQRIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPST 912 Query: 273 IFPEMAAY 280 + + A Sbjct: 913 VLIQQALA 920 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 489 VIFGGDTSERQVSVMSGTNVWINLQR 514 >gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana] Length = 844 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 123/378 (32%), Gaps = 79/378 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 43 GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----------GIELTCGVMGD 184 GSS+G+ V ++ D G C + Sbjct: 260 GSSIGVKVAFGVNDSIKKATLILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVL 319 Query: 185 A------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + F + T+ P + P+ + K ++ A L Q + Sbjct: 320 MPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKL 379 Query: 239 GCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 G R +R D + S + + +IN+ GM S + A+ G Sbjct: 380 GLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASKVG 439 Query: 283 YSFRELLLWMVEDASCLR 300 +S +L +V A C R Sbjct: 440 FSHSNILRTIVHRA-CSR 456 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 488 VIFGGDTSERQVSVMSGTNVWVNLQR 513 >gi|305432181|ref|ZP_07401345.1| D-alanine-D-alanine ligase [Campylobacter coli JV20] gi|304444724|gb|EFM37373.1| D-alanine-D-alanine ligase [Campylobacter coli JV20] Length = 346 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 47/327 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------- 40 A+L GG S E E+S+ S + D + I ++ Sbjct: 4 AILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQK 63 Query: 41 -------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +L D N++HG GEDG + ++LE +I + + AS Sbjct: 64 EKELFLRQKAFYHKSLWSEKNLDLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEAS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 LS +K +K S GV ++ + P ++KP + GSS+GI + K + Sbjct: 124 VLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQD-FTAHFPCILKPARLGSSIGISIAKNE 182 Query: 148 QSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + + C + + + E K + Sbjct: 183 KELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPKKKEFLNFEQKY 242 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 243 LSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFIL--DNEVYLNEINPN 300 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG +F F +++ + Sbjct: 301 PGSLANYLF--------KDFNKIIEQL 319 >gi|94968579|ref|YP_590627.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94550629|gb|ABF40553.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 344 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 119/302 (39%), Gaps = 24/302 (7%) Query: 20 KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILEL 74 + +ALE G + +D + LA DL FN+ G+ ++ V A L+L Sbjct: 42 EEIFAALEKLGHEPSYHILDGHQQSLFALAKSGTDLIFNLTESYDGDDTKEMHVTAFLDL 101 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + IPYT +G L+ DK +K++ + G+ R +D H +S P ++KP Sbjct: 102 VNIPYTGTGPHGHMLAQDKSLAKKMFAFHGIQSPYFATAYRGIVDHAHDVSFPLIVKPTS 161 Query: 135 GGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---- 187 S+GI V+ + + + + LIE+Y++G E+ ++G Sbjct: 162 EDGSIGIDAAAVVSSVKELMERVAYIQA-EFDSPALIEEYIEGREIYSAILGSYETANAL 220 Query: 188 ----------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + + + + ++ A A++A Sbjct: 221 PLVELDLSKLPKGMPKIASQDVKFEKDTEAYKKTKSAVAEDLDEETETKLTATAIKAYRA 280 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + R R D +V+ +E N P ++ F A +G S+ +++ +V+ A Sbjct: 281 VKLRDYGRIDMRLSTK-GEVYVIEANPNPWLSSGQEFAMAAKKSGLSYTQMIGEIVDHAI 339 Query: 298 CL 299 Sbjct: 340 AR 341 >gi|325972391|ref|YP_004248582.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] gi|324027629|gb|ADY14388.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy] Length = 325 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 14/294 (4%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71 S+ + A +AL+ G + +I +++ L + DL FN+ G FG + ++ A+ Sbjct: 28 SIVTIDAIDAALQKLGHQTVRIGNVKALVGYLGEGKRCDLVFNIAEGLFGLLRESVIPAL 87 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 L+ +IPY S A+ + K +K+VV GV +++ Q + P +K Sbjct: 88 LDAYQIPYVFSDSFVLAICLHKGFTKEVVRKAGVATADFCVLSSSDDWKQVSLPYPLFLK 147 Query: 132 PLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 P+ GG + + + + + + +L+E Y+ G E T G+ G Sbjct: 148 PVAGGTGIGITASSKVTNPKDLQK-VSGAMLAAYQQPVLVETYLGGREFTVGITGTGDEA 206 Query: 189 VTEIAVPKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S Y K T + +K + +A A +A+GCR Sbjct: 207 QSTGVMEIIIDHSSDGGIYSYKTKQEYETTTRYERPDESAWKASEAVALAAWRALGCRDG 266 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 R D D V +LE+N G+ P+ S P ++ G + EL+ ++ A Sbjct: 267 GRIDVKMDEK-GVVHFLEVNPLAGLHPIDSDLPILSRMHGLGYDELIARIMHSA 319 >gi|34556865|ref|NP_906680.1| D-alanyl-alanine synthetase A [Wolinella succinogenes DSM 1740] gi|39930816|sp|Q7MA71|DDL_WOLSU RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|34482580|emb|CAE09580.1| PUTATIVE D-ALANINE--D-ALANINE LIGASE [Wolinella succinogenes] Length = 345 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 45/312 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AV+ GG S E E+S+ S + L +D +R + Sbjct: 4 AVIFGGASYEHEISIVSAISLKKILPALEH-FIFVDGNRDFYWIPASEMRSKHFADGIYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D A N++HG GEDG + ++LE IP+ I A Sbjct: 63 KNPKLFLRPGGFYAKGLWGEKRVPFDTALNLIHGGDGEDGKLASLLEFFRIPFIGPRIEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S +S +K +K GV P +L R + P ++KPL+ GSS+G+ + K Sbjct: 123 SVMSFNKHLTKLYAKERGVKTLPYLLA-RKNEKREFGNEFPLIVKPLRLGSSIGVSIAKN 181 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + L + + L+E ++ GI+ + + + + + Sbjct: 182 RQELDYALDVAF--EFDEAALLEPFMQGIKEYNLAGCKINGEYHFSIIEEPQKKEFLDFD 239 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEI 262 + D+ + +RL A + + R DF +++VF EI Sbjct: 240 KKYLDFSRTQKLLKADLSEASERLLKEAFIKLYDDSFEGSLIRCDFFV--QNQEVFLNEI 297 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 298 NPIPGSLANYLF 309 >gi|217032140|ref|ZP_03437639.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128] gi|298736440|ref|YP_003728966.1| D-alanine-D-alanine ligase [Helicobacter pylori B8] gi|216946130|gb|EEC24739.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128] gi|298355630|emb|CBI66502.1| D-alanine-D-alanine ligase [Helicobacter pylori B8] Length = 347 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52 VL GG S E E+S+ S A AL+D I+ A +K Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKDRIKHFIFLDEDHHFYLIEASNMHSKYFAQIKEK 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L N++HG GEDG + ++LE I + + A Sbjct: 64 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K ++ GV +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYANNLGVKTLGHVLLNEKNRANALDLMNFNFPFIIKPNSAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P + ++++ + + I R DF KV+ Sbjct: 242 DFKQKYLDFSRAKSPKANLSSALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NKVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLAHYLF 313 >gi|170727019|ref|YP_001761045.1| D-alanyl-alanine synthetase A [Shewanella woodyi ATCC 51908] gi|169812366|gb|ACA86950.1| D-alanine--D-alanine ligase [Shewanella woodyi ATCC 51908] Length = 359 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 36/309 (11%) Query: 11 EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51 E +SL S ++L + ++++D + + P Sbjct: 40 EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 99 Query: 52 ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ +L+++P+ +S+ +K+ +K S+ GVP Sbjct: 100 WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 159 Query: 109 PSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P I +N IK GSS+G + + L Q+ + Sbjct: 160 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAF--SF 217 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPA 217 +++E+ ++ EL V + + + + + A Sbjct: 218 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 277 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + ++ +++Q A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 278 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 336 Query: 278 AAYAGYSFR 286 G F Sbjct: 337 LQNHGDDFT 345 >gi|189083033|sp|A8Z6L3|DDL_CAMC1 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|158604979|gb|ABW74793.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter concisus 13826] Length = 346 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 115/312 (36%), Gaps = 47/312 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49 V+ G S E E+S+ S + G K D +R L+ Sbjct: 4 GVIFGAKSFEHEISIVSAI-VLKNVLKQGLKFIFCDANRDFYLIEQKDMRANFFSSGKYK 62 Query: 50 -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + D+ N++HG GEDG + A+ E + Y + A Sbjct: 63 NSKKLSLAKGGFYTHSLFGANKVECDVIINLIHGMDGEDGKIAALFEFYGVKYIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SALS +K +K + GV + T S+ P ++KP + GSS+G+ V+ Sbjct: 123 SALSYNKELTKFLAQKAGVKALDYEM---LTRQSEPKFHYPIILKPARLGSSIGVSVVHD 179 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYE 203 D + + ++ +L+E ++ G++ K +F YE Sbjct: 180 DSEL--AYAKDVAFEFDKDVLVEPFIKGVKEYNLAGCRIDGKIKFSIVEEPKKKEFLDYE 237 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262 KY S ++ + + + K+ + F G G I R DF + +V+ EI Sbjct: 238 QKYLSFSNENKVKEAEISEELKQKLKFNFSKIYDCGFDGAIIRCDFFV--IDDEVYLNEI 295 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 296 NPNPGSLANYLF 307 >gi|224372975|ref|YP_002607347.1| D-alanyl-alanine synthetase A [Nautilia profundicola AmH] gi|223589885|gb|ACM93621.1| D-alanine--D-alanine ligase [Nautilia profundicola AmH] Length = 344 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 56/331 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 A+L GG S E E+S+ S ++ + ID +R++ LV Sbjct: 4 ALLFGGNSFEHEISIVSAITLKDKIKKHTLEFIYIDQNRNMYLVDKQNMKSKYFASGEYK 63 Query: 49 ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L D N++HG GEDG + ILE I + Sbjct: 64 NSQKIEITKGGFKYTKGLLKKDVFLNYDAVINLIHGKDGEDGKLAGILEFFNIKSITPNV 123 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 AS +S +K+ +K GV V ++ + + P +IKP + GSS+G+ V+ Sbjct: 124 EASVISYNKVLTKAYAKEIGVNVIDYEII----TEPKSSFDFPIIIKPARLGSSIGVSVV 179 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYS 201 K + + D ++ E +++GIE + V KSDF Sbjct: 180 KTQEEFDYAFDVAR--EFDDLIIAEPFIEGIEEYNLAGCLAGGEFMLSNIEKVEKSDFLD 237 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +E KY + +V+ + + D+ + +++ + + I R DF V+ E Sbjct: 238 FEKKYMDFSRKNVMLSDVDKDLTERIKKTFKKIYNSTFKNAIIRCDFFV--KEGSVYLNE 295 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 IN PG +F F ++L + Sbjct: 296 INPIPGSMANYLFD--------DFDDVLEKL 318 >gi|190359231|sp|B1KI99|DDL_SHEWM RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase Length = 335 Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 36/309 (11%) Query: 11 EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51 E +SL S ++L + ++++D + + P Sbjct: 16 EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 75 Query: 52 ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ +L+++P+ +S+ +K+ +K S+ GVP Sbjct: 76 WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 135 Query: 109 PSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P I +N IK GSS+G + + L Q+ + Sbjct: 136 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAF--SF 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPA 217 +++E+ ++ EL V + + + + + A Sbjct: 194 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 253 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + ++ +++Q A + + +SR DF ++ EIN PG+TP+S+FP+M Sbjct: 254 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 312 Query: 278 AAYAGYSFR 286 G F Sbjct: 313 LQNHGDDFT 321 >gi|116748158|ref|YP_844845.1| D-alanine--D-alanine ligase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697222|gb|ABK16410.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 326 Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 25/309 (8%) Query: 7 GISSEREVSLSSGK--------ACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNV 57 G S E + + A SAL D F+ +I R++ LA + DL FN+ Sbjct: 17 GYSDE-----ETAEFDRPETIDAIESALRDLKFETDRIGHVRNLVRRLAVGERWDLVFNI 71 Query: 58 LHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 G FG + + A+L+ IPYT S L +LS+ K +K V+ + G+P +++ Sbjct: 72 AEGLAGFGREAAIPALLDAYGIPYTFSDPLVLSLSLHKGMAKNVLRNMGIPTADFVVIQD 131 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD--QSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P KP+ G+ GI + Q + + + +LIE+++ Sbjct: 132 VSETEAIGIPFPVFAKPVAEGTGKGIDAASRIGTQEELVAKCRQLLEVYRQPVLIEKFLP 191 Query: 174 GIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 G E T G++G + + + +Y V I + Sbjct: 192 GREFTVGLVGTGAKTEVVGVMEVILKDGAERDAYSYSNKEHYERRVEYRLAEGSIARLAA 251 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRE 287 R++ A + +GCR R D D ++E+N G+ P S P ++ AG S+ E Sbjct: 252 RISVEAWRKLGCRDGGRIDLRCDER-NVPSFVELNPLAGLHPVHSDLPILSRLAGMSYVE 310 Query: 288 LLLWMVEDA 296 L+ ++ A Sbjct: 311 LIGRIMASA 319 >gi|310658242|ref|YP_003935963.1| d-alanine-d-alanine ligase a [Clostridium sticklandii DSM 519] gi|308825020|emb|CBH21058.1| D-alanine-D-alanine ligase A [Clostridium sticklandii] Length = 306 Score = 96.9 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 49/296 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 + ++ GG S+E EVSL S L V I +DR Sbjct: 3 IGLIFGGKSAEYEVSLQSAMHIYKRLNKDVHNVYLIGMDRDGFMHYFDGSIEEVSDGSWF 62 Query: 42 -------VGLVLAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 V L KP +L F VLHG +GEDG +Q +LEL IPY Sbjct: 63 DKKTSAEVILYSNKKKPGIYDNDKVIAELELVFPVLHGPYGEDGKLQGLLELSGIPYVGC 122 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGG 136 +LASA MDK +K++ S G+ P I + + + P IKP G Sbjct: 123 SVLASANGMDKDMAKKIFSYEGINQVPHITCYSYEQTQEIVSRAEANLGYPCFIKPANMG 182 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IA 193 SS+GI K Q + L + ++ + +++IE+ V+ E+ V+G+ Sbjct: 183 SSVGISKAKDKQQLVLAM--QKAFEYDHKIIIEKGVNAREIEVAVLGNCDNIRISVAGEI 240 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 +P +FY Y+ KY S S ++PA + + +++Q +A+ A++ + G+ R F Sbjct: 241 IPSDEFYDYDAKYKSNASQLIIPADLSFEADRQIQDMAYRAYKGLNAEGLCRIRFF 296 >gi|322378889|ref|ZP_08053306.1| D-alanine--D-alanine ligase [Helicobacter suis HS1] gi|321148699|gb|EFX43182.1| D-alanine--D-alanine ligase [Helicobacter suis HS1] Length = 350 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 56/335 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39 +L GG S E E+S+ S A L+ D K ID Sbjct: 6 GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 65 Query: 40 RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S LVL H + N++HG GEDG + + L+ + + + Sbjct: 66 KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 LS K +K + G+ + P I + + + + + P ++KP + GSS+GI VIK Sbjct: 126 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 185 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKS 197 + I + + Q+LIE + G++ V E K Sbjct: 186 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVEEPHKKE 243 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E + V A I + ++++++ L + I R DF ++ +V Sbjct: 244 WLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEEV 301 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + EIN PG +F F LL + Sbjct: 302 YLNEINPIPGSLAHYLFE--------DFSSLLEQI 328 >gi|210134940|ref|YP_002301379.1| D-alanyl-alanine synthetase A [Helicobacter pylori P12] gi|226696388|sp|B6JLX1|DDL_HELP2 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|210132908|gb|ACJ07899.1| D-alanine:D-alanine ligase A [Helicobacter pylori P12] Length = 347 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 121/314 (38%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------D 39 VL GG S E E+S+ S A L+D I+ Sbjct: 4 CVLFGGASFEHEISIVSAIALKEVLKDRIKHFIFLDENHHFYLIEASNMHSKYFAQIKEK 63 Query: 40 RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + L+LAH ++ L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIKFNFPFIVKPSNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLAHYLF 313 >gi|322380385|ref|ZP_08054591.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5] gi|321147175|gb|EFX41869.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5] Length = 348 Score = 96.5 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 56/335 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39 +L GG S E E+S+ S A L+ D K ID Sbjct: 4 GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 63 Query: 40 RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S LVL H + N++HG GEDG + + L+ + + + Sbjct: 64 KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 LS K +K + G+ + P I + + + + + P ++KP + GSS+GI VIK Sbjct: 124 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 183 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKS 197 + I + + Q+LIE + G++ V E K Sbjct: 184 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVEEPHKKE 241 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 E + V A I + ++++++ L + I R DF ++ +V Sbjct: 242 WLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEEV 299 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + EIN PG +F F LL + Sbjct: 300 YLNEINPIPGSLAHYLFE--------DFSSLLEQI 326 >gi|291276693|ref|YP_003516465.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198] gi|290963887|emb|CBG39723.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198] Length = 344 Score = 96.5 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 115/312 (36%), Gaps = 44/312 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48 +L GG S E E+S+ S + L+ +D + + +H Sbjct: 4 CILFGGASWEHEISIVSAITLKNVLKQENLLFIFLDEEHRFYHIQSHQMQADFFAQKKHK 63 Query: 49 ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ D+ N++HG GEDG + +L+ IPY + A Sbjct: 64 SQKPLHLDRRGFFTSGFFGKNPLEFDILLNLVHGADGEDGTLAGLLDFYHIPYIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K+ +K G+P P + + + + + + P +IKP + GSS+GI + K Sbjct: 124 SVLSFNKLYTKIFAKERGIPTLPFVHLTQ-HQEQKIPLDFPLIIKPARLGSSIGISIAKD 182 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 QS+ L Q+ + +L+E + GI+ D + + + Sbjct: 183 PQSLNFALDQAF--EYDSSVLVEPFFSGIKEYNLAGCKIQGDFVFSLIEEPGKKEFLDFE 240 Query: 207 SSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 ++ + +Q+ ++ + R DF K++ EI Sbjct: 241 DKYLDFSRDSKIENANLSAQNVTKMQKHFEALYENCFEGALIRCDFFIHE--DKIYINEI 298 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 299 NPIPGSMANYLF 310 >gi|149922083|ref|ZP_01910523.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] gi|149817020|gb|EDM76502.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1] Length = 674 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 14/306 (4%) Query: 7 GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFG 63 G SE E S + A A AL G V +++ + L K LAFN+ G Sbjct: 353 GDDSEAEFDSRETVDALADALGQLGLDVVELEATPDLVHTLPRAKLALAFNIAEGSRGRC 412 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +V A+LELL +PYT S +A AL++DK +K V++ G+ ++ R + Sbjct: 413 RELIVPALLELLGVPYTGSDAVAMALTLDKSLAKAAVAAAGLRTPSWAVLRRGSDPLPTG 472 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGV 181 + P +KP+ GSS GI ++ + + +L+E+Y+ G E T G+ Sbjct: 473 LRYPLFLKPIAEGSSKGIDDGAVVLDERSLRTRAWALLARYHQPVLVEEYLPGREFTVGI 532 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNS-------THVLPAKIPLDIYKEVQRLAFLA 234 + V D Y + + PA++ D+ ++ A A Sbjct: 533 VEALHPAVLAPMEIIHDDSDSHAFYGFESKLSADAGVRYQAPAQVDADLDDALRSAAQAA 592 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293 +A+GCR ++R D D + ++E N PG++P S +AA G + L+ +V Sbjct: 593 FRALGCRDVARIDLRLDAA-GEAHFIECNPLPGLSPGWSDLCMIAAAEGIDYAGLVAGLV 651 Query: 294 EDASCL 299 A Sbjct: 652 APALAR 657 Score = 78.8 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 84/297 (28%), Positives = 130/297 (43%), Gaps = 19/297 (6%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGL--VQAILELL 75 A A+ L D G +V D+ +G +A L+ PDL N G G A+ E L Sbjct: 28 AIATMLRDLGHQVGLFDMSNELGQAVAELERYAPDLVLNTAEGQGGPLREALFPALFEEL 87 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKP 132 + YT SG AL++DK R+K+VV++ GVP S P +IKP Sbjct: 88 GLAYTGSGPTTCALTLDKHRTKEVVAALGVPTPRSFLIEDYTELADIPASSWPIPAIIKP 147 Query: 133 LKGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG------VMG 183 GSS G + + +PL L+ +L+E +V G ++T + Sbjct: 148 NFEGSSKGVSGHSIAHDPREVPL-LVSRLLARFEAGVLVEAFVPGRDVTVPWLEVVGALP 206 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + V Y YELK PAK+ + +++ R++ A+ R + Sbjct: 207 AAEYSFGDAPVDAQQIYDYELKQDGGAVQVQTPAKLAPALARKLARMSERIVAALNVRDL 266 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R DF P S + ++LEIN P + P + E AA AG S +++L V ++ R Sbjct: 267 ARLDFRITP-SGEPYFLEINALPSLEPGASIYESAALAGLSQPDMVLGSVIASAVRR 322 >gi|327399078|ref|YP_004339947.1| type 11 methyltransferase [Hippea maritima DSM 10411] gi|327181707|gb|AEA33888.1| Methyltransferase type 11 [Hippea maritima DSM 10411] Length = 661 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 25/298 (8%) Query: 24 SALEDAG-FKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAIL----ELLE 76 AL + ++ ++ ++ L LKP D FN+ F + + + E+L Sbjct: 331 KALNELKNYRFIYVNNHDTLISDLIKLKPKIDFVFNLCDEGFNNEPTKELYIPALLEMLN 390 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPYT S A DK + V G+PV ILV + + P ++KP G Sbjct: 391 IPYTGSNPQCLAYCYDKSLIRGVAKEMGIPVPKGILVTPDKTVLELPFNFPAIVKPNFGD 450 Query: 137 SSL---GIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDG----------IELTCGVM 182 SS V+ + L + H +LIE+++ G I ++ Sbjct: 451 SSFGITKKSVVYTMDELIEVLSEIKEQFGHDKPVLIEEFLTGSDLTIGIIGNISGNYKIL 510 Query: 183 GDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 D +++ YE K+ S + A++ + + + + + + Sbjct: 511 PIIEEDYSKLPDDLPKICGYEAKWLPGSPYWNNTSRLAQLDEETERIIVESSLKLWERLN 570 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 R D+ D S K LE+N PG +MA AG S+ E+L ++E A+ Sbjct: 571 VNDYCRFDWRLDSES-KPKLLEVNPNPGWCWDGHLAKMAKIAGISYGEMLNMILEAAA 627 >gi|261839442|gb|ACX99207.1| D-alanyl-alanine synthetase A [Helicobacter pylori 52] Length = 347 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDSAF--EYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|157363761|ref|YP_001470528.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] gi|157314365|gb|ABV33464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO] Length = 305 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 18/287 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 ++ L F+ + + + D FN+ V AILELL+IP Sbjct: 21 QSVFETLSKH-FEAELVAFEDQFVDKVTQ--FDAVFNLS--TAAMQTHVPAILELLKIPS 75 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139 T SGI+ AL +DK +K +++ GVP I + + P +IKP + GS+ Sbjct: 76 TGSGIIGHALCIDKTITKIILNHYGVPTPKFISLEPGQETIPPVDFYPVIIKPSREGSAR 135 Query: 140 GII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV------MGDASLDVT 190 G+ V+K+D ++ + S H LIEQ+VDG E + G+ T Sbjct: 136 GLSADSVVKEDFALKKAVKVIHSEFH-QPALIEQFVDGREFSVGIVAGEILPILEIDFST 194 Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + + Y + ++ PA+I ++ + + A A +A+ R +R D Sbjct: 195 LPDGLERFYSYRVKHYYGEQTRYICPAQIDTELKDRISKYALTAFKALRLRNYARMDLRV 254 Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 ++++LE+N P +TP S +MA AGY++ +L++ + DA Sbjct: 255 --KDGQIYFLEVNSLPMLTPGYSDIVKMAEAAGYTYEDLIMKIFMDA 299 >gi|315636188|ref|ZP_07891442.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22] gi|315479549|gb|EFU70228.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22] Length = 347 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 113/315 (35%), Gaps = 47/315 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A++ GGIS E E+S+ S A L+ +D R Sbjct: 3 VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V ++ D+ N+ HG GEDG++ ++L+ IP+ Sbjct: 63 KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 A +S +K +K S V + S P ++KP+K GSS+G+ + Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKDDKIEVD--SFPVILKPVKLGSSIGVAI 180 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 +K + + L + D ++IE ++ G++ + + + + + Sbjct: 181 VKSQEELQYALDVAF--EFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238 Query: 204 L----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 ++ + + E++ + + I R DF ++ +++ Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296 Query: 260 LEINVQPGMTPVSIF 274 EIN PG +F Sbjct: 297 NEINSIPGSMANYLF 311 >gi|225439600|ref|XP_002265851.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera] Length = 952 Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 133/380 (35%), Gaps = 81/380 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + V+ GG S+ER +SL+S ++ ++ VS +D Sbjct: 79 VGVICGGPSAERGISLNSARSVIDHIQGDDLLVSCYYIDCNLNAYAISPAQVYSNTPTDF 138 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ + Sbjct: 139 DFKLESLAQGFRSLSDFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNE 198 Query: 87 SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK S + G S L F + S V+KP + Sbjct: 199 CRQAFDKYDSSLELDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRA 258 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------IELTCGVMG 183 GSS+G+ V + + D++L+E +++G C + Sbjct: 259 GSSIGVTVAYGVADSLKKANEIIAEGIDDRVLVEIFLEGGSEFTAIVLDVGSGFDCHPVV 318 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQ 236 +V +D + ++ + P + P+D+ ++ A L Q Sbjct: 319 LLPTEVEIQLHDNADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIREGASLLFQ 378 Query: 237 AIGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAY 280 +G +R D F P S V + +IN+ GM S + A+ Sbjct: 379 RLGLHDFARIDGWFLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSFLFQQASK 438 Query: 281 AGYSFRELLLWMVEDASCLR 300 G+S +L +++ A CLR Sbjct: 439 VGFSHSNILRSIIQRA-CLR 457 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ L + G SR D + S +V +E+N PGMTP ++ A Sbjct: 876 CKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 929 Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36 V+ GG +SER+VSL SG L+ +V Sbjct: 495 VIFGGDTSERQVSLMSGTNVWLNLQAFNDLEVIPC 529 >gi|317182047|dbj|BAJ59831.1| D-alanyl-alanine synthetase A [Helicobacter pylori F57] Length = 347 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|317034958|ref|XP_001400807.2| D-alanine--D-alanine ligase [Aspergillus niger CBS 513.88] Length = 351 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 37/314 (11%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILE 73 + A+AL++ G +V + S+ LAH + DLAFN G G +G V A+LE Sbjct: 37 AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124 +IP+T S L +DK R+K V+ VP P +++ + + Sbjct: 97 AYQIPFTFSDAATMTLCLDKGRTKMVLEHFNVPTAPFAVIHFDHTAEKTQVSLDEILSMI 156 Query: 125 -----------SPPYVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGD-QLLIE 169 P +KPL GSS IK +S+ + + +L+E Sbjct: 157 RMSRHSETLLSQYPLFVKPLAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVE 216 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQ 228 +Y+ G E T G++G E A Y + Sbjct: 217 KYLPGREFTVGILGT-----GEDAWVVGVDEIYGASADDWAGEADEIKIGWDDQEADLAC 271 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPV-SIFPEMAAYAGYSFR 286 + A A + CR R D D V +EIN G+ P S P +A + S+ Sbjct: 272 QTALRAWTVLRCRDGGRIDIRMDHSGSPVAHVMEINPLAGLLPHWSQLPMIAEHNNVSYN 331 Query: 287 ELLLWMVEDASCLR 300 EL+ ++++ A R Sbjct: 332 ELIEYILKSALQRR 345 >gi|308063477|gb|ADO05364.1| D-alanyl-alanine synthetase A [Helicobacter pylori Sat464] Length = 347 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+ D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 K-PDLAF----------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K P L F N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLIFTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L ++ + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|78358082|ref|YP_389531.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220487|gb|ABB39836.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 349 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 125/306 (40%), Gaps = 19/306 (6%) Query: 7 GIS----SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGN 61 G S +E + S ++ + +AL+ G++ +I ++ L + D+ FN+ G Sbjct: 17 GYSEEEAAEFD-SPATIEGIETALQALGYETQRIGALPALAAALLQGRRWDIVFNIAEGC 75 Query: 62 FGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G V A+L+ +PY S + + + K +K +V G+P ++++ Sbjct: 76 HGFGRESQVPALLDYYSVPYVFSDPMTLGICLHKGMTKHIVRDNGIPTADFVVISDPAEA 135 Query: 120 SQHLISPPYVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +KP+ G ++ Q + H +L+E ++ G E Sbjct: 136 AAVSLPYPLFVKPVAEGTGIGVGAASKVQNPQEL-AAACARLIDRHRQPVLVETFLCGRE 194 Query: 177 LTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 LT G+ G + T + P ++ Y + V ++ + +A Sbjct: 195 LTVGITGTGAGARTLGALEVVFAPAAESDVYGYVNKAEYLERVQYHLADDADAQKARHVA 254 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLL 290 A +A+GCR R D FD ++E+N G+ P S P M AG + +L+ Sbjct: 255 LAAWRALGCRDGGRVDLRFDAR-GVPNFIEVNPLAGLNPVNSDLPIMCYKAGLRYEQLIG 313 Query: 291 WMVEDA 296 ++E A Sbjct: 314 QIMESA 319 >gi|308062059|gb|ADO03947.1| D-alanyl-alanine synthetase A [Helicobacter pylori Cuz20] Length = 347 Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIVKPNNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|207092530|ref|ZP_03240317.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_AG0C1] Length = 347 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVDRSVGLVLAHLKPD 52 VL GG S E E+S+ S A AL+ D I+ A +K Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEETNMHSKYFAQIKEK 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHNGLLKNSFLSTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +LVN + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFY 200 +K+++ + L + + ++LIE ++ G++ K +F Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDLCFSYVEEPNKQEFL 241 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 ++ KY + A + + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|170702583|ref|ZP_02893457.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] gi|170132517|gb|EDT00971.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10] Length = 357 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 118/333 (35%), Gaps = 44/333 (13%) Query: 1 MAVLMGGISSEREVSLSS---GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------ 51 ++++ GG S E SL S + + + V++ + + +P Sbjct: 7 VSIIFGGKSPEYSASLESFRHVREVVQSSPELDID-YIYYVNQDNKVAIVSHRPRDTLED 65 Query: 52 ---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 N+LHGN+GEDG +Q ++ IP + +L ++L+ Sbjct: 66 YLRRTDVMPYWMALGQMGARQTFVLNLLHGNYGEDGCIQGAASMMSIPGSFGPVLPASLA 125 Query: 91 MDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 M K + V + + + + V+KP G+SL Sbjct: 126 MSKYHMSRYVAKAHPSARMPRTLILSDGDIGIAHKRITDAFPEGDVVMKPNSLGASLFTQ 185 Query: 143 VIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 + + + + + L+++Y+ G E + G + + V Sbjct: 186 RFTMRREAVDAVRSNLAAILEYDRHALVQEYIAGDEYSVGCFQEHDVVTALPVVRIETAD 245 Query: 201 SY--ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + + ++ + ++RL+ + +G R + R DF+ + + Sbjct: 246 GFFGHAQKHRHGKVRETVVFEDDEVTRAIKRLSVDIFRDVGFRNMCRFDFIVT-RNGDIV 304 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +LE N PG+ SIFP+M A + +++ Sbjct: 305 FLEANPIPGLMKNSIFPKMLAAIDLTLVDMVRQ 337 >gi|302035853|ref|YP_003796175.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii] gi|300603917|emb|CBK40249.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 340 Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 23/294 (7%) Query: 22 CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75 S L G +V + V + ++ + KP +AFN+L G D V + LEL+ Sbjct: 36 VVSTLRKLGHEVQPLGVKSDLEVIRAAVEDWKPHIAFNLLEEFDGRAVYDQNVVSYLELM 95 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134 IPYT L+ DK +KQV+S +P ++V M + + P ++K + Sbjct: 96 RIPYTGCNPRGLMLARDKALAKQVMSYHRIPYPEFMVVPLHRMVRRPKYLPFPLIVKSIS 155 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------ 186 +SLGI D + + N G L+E+Y++G EL GVMG+A Sbjct: 156 EEASLGISQASIVDDDEKLRERVAFIHDNVGTGALVERYIEGRELYVGVMGNAHLQVFPV 215 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-------IYKEVQRLAFLAHQAIG 239 ++ +P+ + + + VQ LA ++A+G Sbjct: 216 WELVMDKMPEEARRIATERVKWSRKYQDKYGICSCEARNLPDGVVDHVQHLAKRVYRALG 275 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G +R D D V+ LE N P + F + A A ++++LL ++ Sbjct: 276 LSGYARIDMRMD-QDGNVYVLEANPNPQIASGEDFADSAEKADLAYKDLLQELL 328 >gi|268323538|emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon] Length = 720 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 113/297 (38%), Gaps = 17/297 (5%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------AFNVLHG--NFGEDG 66 + K A +LE G V + + + L P + FN+ +G Sbjct: 29 KTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERMGMVFNMAYGIQGESRYT 88 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 + A+LE+L IPY SG +L++DK+ +K ++ + V + + Sbjct: 89 HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQSISTPNF-WVYSSGDEDMSDVQY 147 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVM 182 P ++KP S GI ++ + + + + Q L+EQ++ G E Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEDDLRAAVKFVVT-EFIQQALVEQFIRGREFCVGLLGNGD 206 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +A + D + PAKI + E+ RL+ A +A+ R Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLAAEMVRLSKDAFRALELRD 266 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R D D ++ LEIN + + A AGY + L+ ++E A+ Sbjct: 267 FARVDIRMDEAEN-IYLLEINSMASLGLTGSYVYAANVAGYDYARLVNKILEVAAVR 322 >gi|315586593|gb|ADU40974.1| D-alanine--D-alanine ligase [Helicobacter pylori 35A] Length = 356 Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 13 CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 72 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 73 KLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 132 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 133 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 192 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 193 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 250 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALVRCDFFVIE--NEVYLN 308 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 309 EINPIPGSLANYLF 322 >gi|325111081|ref|YP_004272149.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] gi|324971349|gb|ADY62127.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305] Length = 329 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 15/291 (5%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG--NFGEDGLVQAILELLEI 77 A AL G +V +I + + LA DL FN+ G + V +IL++ EI Sbjct: 34 AIVDALVACGHEVDRIGRAKQLVHRLADGCSWDLVFNISEGLRGLSRESQVPSILDVYEI 93 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S L ++ + K +KQVV+ G+ S+LV++ + + + P KP+ G+ Sbjct: 94 PYTFSDPLTLSVCLHKELTKQVVARAGILTPASLLVSQLSDLDRLHLQFPLFAKPVAEGT 153 Query: 138 SL--GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLD 188 + + +L+E ++ G E T G+ +L+ Sbjct: 154 GKGVTPASCVNSFNELHSVCLQLLTEFEQPVLVESFLPGREFTVGILGTGEAARVVGTLE 213 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSD 247 + + YSY K + +P D ++ + LA A +A+GCR R D Sbjct: 214 IVLREAAEVGVYSYVNKERCEDLVDYVPVNGHDDAEVRQAEELALTAWRALGCRDGGRID 273 Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDAS 297 D + ++E N G+ P S P +A G ++ +L+ +V A+ Sbjct: 274 VRSDSH-GRPNFIEANPLAGLHPHHSDLPMIATAVGMTYVDLIDQIVTSAA 323 >gi|163783735|ref|ZP_02178721.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1] gi|159880981|gb|EDP74499.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1] Length = 328 Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 17/292 (5%) Query: 22 CASALEDAGFKVSQIDVD----RSVGLVLAHLKPD--LAFNVLHGNF--GEDGLVQAILE 73 A + G +V D + + + K D + FN+ +G V A+LE Sbjct: 34 IAKVVSSRGHRVEVFDANLELCEKLLNFVEECKVDNVIVFNLSYGTQGESRYSHVPAMLE 93 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 +L I YT SG A+++DK+ +K V G+P ++++ + + +S P V+KP Sbjct: 94 MLGIMYTGSGPFGHAIALDKVSTKLVFKEYGIPTPEFVVISPYQKIPEG-LSFPLVVKPR 152 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 SLG+ +++ + + L G + L+E+++ G E ++G+ Sbjct: 153 MEAQSLGVNLVRNYRELEDTLTHVWE-EFGQEALVEEFIRGPEYEVSLIGNGKYIKALPI 211 Query: 194 VPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 E YS + PA I ++ + + L+ A A+ R +R D Sbjct: 212 TGIYLGDDPEAIYSREAKLKYHPEQFCPAAIKGELARRLVELSIKAFNALHLRDYARFDL 271 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 K ++ E+N + P F A AG S+ +L+ ++ +S R Sbjct: 272 RL-GEDGKPYFFEVNSMASLNPSGSFFCAAKAAGLSYDQLIFKIL-HSSLRR 321 >gi|157736996|ref|YP_001489679.1| D-alanyl-alanine synthetase A [Arcobacter butzleri RM4018] gi|157698850|gb|ABV67010.1| D-alanine--D-alanine ligase [Arcobacter butzleri RM4018] Length = 347 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 113/315 (35%), Gaps = 47/315 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41 +A++ GGIS E E+S+ S A L+ +D R Sbjct: 3 VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62 Query: 42 ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 V ++ D+ N+ HG GEDG++ ++L+ IP+ Sbjct: 63 KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 A +S +K +K S V + S P ++KP+K GSS+G+ + Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKDDKIEVD--SFPIILKPVKLGSSIGVAI 180 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 +K + + L + D ++IE ++ G++ + + + + + Sbjct: 181 VKSQEELQYALDVAF--EFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238 Query: 204 L----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 ++ + + E++ + + I R DF ++ +++ Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296 Query: 260 LEINVQPGMTPVSIF 274 EIN PG +F Sbjct: 297 NEINSIPGSMANYLF 311 >gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii] gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii] Length = 857 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 70/369 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +A++ GG S+ER +SL+S ++ L+ +V +D+ + Sbjct: 24 VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83 Query: 43 --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L LK D+ F V+HG FGEDG +Q +LE IP+ +G A Sbjct: 84 DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135 + + DK + + +S G PS L++ +D L+ V+KP K Sbjct: 144 ARCAFDKYEAAKELSRHGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178 GSS+G+ V + D D++++E ++ G + Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 L ++ + F + ++ P + P+ + ++ A + Sbjct: 264 LLPTEVELLHGDGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323 Query: 239 GCRGISRSDFLFDP------LSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 R +R D P S + ++N+ GM S + AA G S R++L Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383 Query: 291 WMVEDASCL 299 ++ A Sbjct: 384 LVLNRARTR 392 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 P + + + L + G +R D + + +V +E+N PGMTP Sbjct: 769 PPPPLICSEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTP 826 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36 VL GG SSER+VSL SG L VS Sbjct: 420 VLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454 >gi|297621521|ref|YP_003709658.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU 86-1044] gi|297376822|gb|ADI38652.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU 86-1044] Length = 380 Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 85/361 (23%), Positives = 136/361 (37%), Gaps = 74/361 (20%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AVL GG S E E+S+ +G AL +K+ + + Sbjct: 5 AVLFGGRSIEHEISVITGLQAILALNPKKYKILPVYFALNGKWYTGDPLLERSFYRKLPA 64 Query: 46 -----------------------LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L P D HG +GEDG VQ +LEL +PYT Sbjct: 65 AYSDLTEITLLPDPSIGGFKDLALNRTYPVDRCLLCFHGQYGEDGCVQGLLELAGLPYTG 124 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKP 132 S +L+SAL+M K +K ++ + +P P ++V++ + P IKP Sbjct: 125 SRVLSSALTMSKSHTKLLLQALNIPCLPHVVVDKQEAVSDLAAVRKKILDTLRYPLFIKP 184 Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189 GSS+GI S+ L + + +IE Y+D I ++ Sbjct: 185 NHLGSSIGIAKATDKNSLDRALAKVF--LYDSAAIIEPYLDNLLEINVSVLEGDPPRSSA 242 Query: 190 TEIAVPKSDFYSYELKY--------------SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 EI + + SYE KY + + + P + L I + V A A Sbjct: 243 VEIPIASQEALSYEDKYLKGGAKSTGGSSQGMAGLTRMIDPQDLDLKIKQGVINHALKAF 302 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA--GYSFRELLLWMV 293 + + C G+ R DF+ D + +++ E N PG S+ + + ELL ++ Sbjct: 303 KELSCSGVCRFDFMLDTSTETLYFNEANPIPG----SLSFYLWDRTEPKLLYSELLDVLI 358 Query: 294 E 294 E Sbjct: 359 E 359 >gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1] gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1] Length = 663 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 25/300 (8%) Query: 21 ACASALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILE 73 +AL + G++ + + ++ L LK D FN+ F D V A+ E Sbjct: 336 QMKAALRELSGYRFTYLFKHETLIQDLQRLKGKVDYVFNLCDEGFNNDPRKELHVPALFE 395 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 + IPYT +G A A DK + + G+PV + + + P ++KP Sbjct: 396 IYSIPYTGAGPQALAFCYDKSLVRGIAKEMGIPVPDACFITPGDRTYDVGMKFPAIVKPN 455 Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDV 189 G SS + + + + + + LL+E+++ G +++ G++G+ S Sbjct: 456 AGDSSYGITQESIAHSIEELSDIITSLRTTLGYDRSLLVEEFLTGKDISVGIIGNPSGYS 515 Query: 190 TEIAVPKSDF----------YSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V + D+ YE K+ S PA +P + K + R + Sbjct: 516 MVLPVIEEDYSALPPGLPRICGYEAKWLPDSPYWKITSKPADLPEETEKAIVRCCLALFE 575 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + CR R D+ D LE+N PG MA YAG ++ E+L +++ A Sbjct: 576 RLECRDYCRFDWRLDEHGN-PKLLEVNPNPGWCWDGHLARMAKYAGLTYPEMLGRILKAA 634 >gi|294101201|ref|YP_003553059.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293616181|gb|ADE56335.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 367 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 18/298 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAIL 72 L + +A ++ + GF+V + + + L + PD N+ G G + V IL Sbjct: 50 LETVEALSNEIASLGFQVFLFEQNELLLQKLDSIAPDFVLNIAEGLGNYRGRESQVPCIL 109 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PY 128 E L IP++ S + A+++DK+ + V+ + +P + + ++ + Y Sbjct: 110 ESLNIPFSGSDSASLAIALDKVLTSHVLRASNIPAPKNYVAKLPQDTTEKKVIFNTCQKY 169 Query: 129 VIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGD 184 +IKP GSS GI + ++ + ++E+++ GIE+T Sbjct: 170 IIKPRWEGSSKGIFLDSIADTPEKVKTCIKRIWERYNQPAIVEEFLPGIEITAGVAGNTQ 229 Query: 185 ASLDVTEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 P ++ S+ + + P + + K++ LA A +A+ Sbjct: 230 PKCIGMMSITPVTENSSFLYSLEEKRNYLERIRYSGPDSMSPQLRKKIGDLAVRAFKALE 289 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 R I+R DF D + ++IN PG++P S P + +G + EL+ ++ +A Sbjct: 290 LRDIARIDFRLDDK-GQPRVIDINPLPGLSPAYSDLPILYRLSGGEYSELIQTILREA 346 >gi|150019989|ref|YP_001305343.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] gi|149792510|gb|ABR29958.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429] Length = 310 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 121/289 (41%), Gaps = 21/289 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77 A A+ +K + D + K D FN+ + G + V ++L+ L I Sbjct: 20 NAIKDAI-SKKYKCEIVRFDEDFLRKIN--KYDFVFNLSNKGGKEVKQVHVPSVLDFLGI 76 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S A+ +DK+ +K ++ +P +V+ + + ++KP + GS Sbjct: 77 PYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVDVGEIPNYIDGKY--IVKPPREGS 134 Query: 138 SLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------- 187 + GI + ++ L+E+++DG E + GV+G+ Sbjct: 135 AKGITKDSIVDNLEDLKKQVKKIHDEFSQPALVEKFIDGREFSVGVIGNKKPEVLPILEI 194 Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + + + Y + ++ PA + +D+ K+++ A + + R +R Sbjct: 195 DFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQKLFRVLNLRDYARM 254 Query: 247 DFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294 D ++++LE+N P + P S +MA AG + +L+L ++E Sbjct: 255 DLRI--KGGEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKILE 301 >gi|332703219|ref|ZP_08423307.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332553368|gb|EGJ50412.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 339 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 12/288 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLE 76 AL GF +I ++ L + DL FN+ G FG + + +L+ Sbjct: 33 AGIEGALRALGFDTERIGSLPALMSALGQGRRWDLVFNIAEGLNGFGRESQIPCVLDWHG 92 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPYT S + AL + K +K VV + G+P +V ++ + P +KP+ G Sbjct: 93 IPYTFSEPMTLALGLHKGMTKHVVRAAGIPTPDFAVVAEPAEAAKVDLPFPLFVKPVAEG 152 Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--- 191 + LGI + +D +L+E ++ G ELT GV+G + + Sbjct: 153 TGLGIGSASRVTDKAGLMDACARLIERFRQPVLVETFLPGRELTVGVVGTGAKARSVGAL 212 Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 I ++D +Y + + +++A A +A+GCR R D Sbjct: 213 EVIFGDQADPSAYGYINKQDWERRMHYRIADDAEARTAEQVALDAWRALGCRDGGRVDLR 272 Query: 250 FDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 D ++E+N G+ P S P + ++EL+ +V A Sbjct: 273 LDGA-GVPNFIEVNPLAGLNPTYSDLPILCRLNNMPYQELIAAIVHSA 319 >gi|188527419|ref|YP_001910106.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470] gi|229485957|sp|B2UT94|DDL_HELPS RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|188143659|gb|ACD48076.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470] Length = 347 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+ D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + GI A Sbjct: 64 KLPPLILTCNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPGIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|308272543|emb|CBX29147.1| hypothetical protein N47_J01280 [uncultured Desulfobacterium sp.] Length = 326 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 26/300 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILE 73 +A + AL GF + D ++ V L L P FN++ G L + L+ Sbjct: 28 EAVSKALRPLGFNPVPVKFDLNLEAVGIRLQKLNPAFVFNLVESVNGCGSLIHLAPSFLD 87 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIK 131 L I YT S A L+ +K+ K +++ G+ + ++ + V + Sbjct: 88 YLRIAYTGSKTQAMFLTSNKLLGKDYLAANGINTSKAYCLSSLKSKTPVNGRYIIKSVWE 147 Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGV 181 G S ++ +K + L + S GD E+Y+DG E V Sbjct: 148 HASIGMSQDSVVYVKSAPELIAKLERFRSSMIGD-FFCEEYIDGREFNIALLSGPEGVEV 206 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAH 235 + A + T+ K Y K+ + + + D+ + ++ ++ Sbjct: 207 LPPAEILFTDYPPDKLKIVDYSAKWKTDSFEYLNTNRTFNFTSDDRDLIESLKIISRKCW 266 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G RG +R DF D S +++ LEIN P ++P S F + G F E++ ++ED Sbjct: 267 DLFGLRGYARVDFRIDE-SGRLWVLEINANPCISPDSGFVAASKMIGLGFPEIIKRIIED 325 >gi|332798138|ref|YP_004459637.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] gi|332695873|gb|AEE90330.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1] Length = 336 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 24/298 (8%) Query: 24 SALED---AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIP 78 L++ F+ S + D + L + L FN+ +G GE + AILE IP Sbjct: 32 KNLKEVLSKRFECSLVKADSDIISKLQNENVSLVFNLCNGIRGETRQAQIPAILEFSGIP 91 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135 YT S IL L+++K + +V GV I + I P ++KP Sbjct: 92 YTGSSILGHTLAINKNYACKVFKGSGVTTPEFISIYDKDDLMQLRNKEIKFPVLVKPCDE 151 Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GS GI +Q + +++ +Y+ G E T G++G+ + Sbjct: 152 GSGRGIHQDSLVYDFRSLKRKVQQELRLYNPPIMVTEYIKGREFTVGILGNGNNLKVLPI 211 Query: 194 VPKSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + S + + PA + + +++ A A+ A+ R Sbjct: 212 LEISFEALPDDLAKFYSFEVKANYADKTIFRCPAPLDNKLKTKIENTAKKAYNALSLRDY 271 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R D + LE+N PG+ S +MA+ + L+L +VE+A R Sbjct: 272 ARVDVRV--KDDTPYVLEVNSLPGLQKGYSDITKMASACNLGYEGLILKIVENA-INR 326 >gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii] gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii] Length = 857 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 70/369 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42 +A++ GG S+ER +SL+S ++ L+ +V +D+ + Sbjct: 24 VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83 Query: 43 --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L LK D+ F V+HG FGEDG +Q +LE IP+ +G A Sbjct: 84 DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135 + + DK + + +S G PS L++ +D L+ V+KP K Sbjct: 144 ARCAFDKYEAAKELSRFGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178 GSS+G+ V + D D++++E ++ G + Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 L ++ + F + ++ P + P+ + ++ A + Sbjct: 264 LLPTEVELLHADGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323 Query: 239 GCRGISRSDFLFDP------LSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 R +R D P S + ++N+ GM S + AA G S R++L Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383 Query: 291 WMVEDASCL 299 ++ A Sbjct: 384 LVLNRARTR 392 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 P + + + L + G +R D + + +V +E+N PGMTP Sbjct: 769 PPPPLICSEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTP 826 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36 VL GG SSER+VSL SG L VS Sbjct: 420 VLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454 >gi|268323675|emb|CBH37263.1| conserved hypothetical protein, containing D-alanine--D-alanine ligase C-terminus domain [uncultured archaeon] Length = 720 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 17/297 (5%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--------FNVLHG--NFGEDG 66 ++ K A +LE G V + + + L P + FN+ +G Sbjct: 29 NTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERLGMAFNMAYGIQGESRYT 88 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 + A+LE+L IPY SG +L++DK+ +K ++ G+P + + D + Sbjct: 89 HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQGIPTPNFWVYSTGDEDMS-DVQY 147 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVM 182 P ++KP S GI ++ ++ + + Q L+EQ++ G E Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEEDLRAAVKLVVIEFK-QQALVEQFIRGREFCVGLLGNGD 206 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 +A + D + PAKI + + RL+ A A+G R Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLADVMVRLSKDAFHALGLRD 266 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +R D D ++ LEIN + + A AGY + L+ ++E A+ Sbjct: 267 FARVDIRMDEAKN-IYLLEINSMASLGLTGSYVHAANVAGYDYARLVNKILEVAAVR 322 >gi|152990841|ref|YP_001356563.1| D-alanyl-alanine synthetase A [Nitratiruptor sp. SB155-2] gi|189083044|sp|A6Q3Z7|DDL_NITSB RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|151422702|dbj|BAF70206.1| D-alanine-D-alanine ligase [Nitratiruptor sp. SB155-2] Length = 342 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 109/311 (35%), Gaps = 45/311 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 AV+ GG S E E+S+ S A + G +D +R L+ Sbjct: 4 AVVFGGKSYEHEISIVSTIAIKDIIP--GAIFIFLDGNRDFYLIEKADLKSNYFSSGNYK 61 Query: 46 -----------------LAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L K D+ N++HG GEDG + ++LE EI Y I Sbjct: 62 KSPKLELKKGGFYQKSLLKEKKIPADVVINLVHGADGEDGKLASLLEFFEIDYIGPRIEG 121 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S +S K+ +K CG+ V P + R P +IKP GSS+G+ V+ Sbjct: 122 SVISYSKLLTKLYAKECGIEVLPY-QLLRKQDKKIIDFEYPVIIKPNHLGSSIGVSVVYD 180 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + L + D++LIE +++GIE + + Sbjct: 181 SSELEYALDVAF--EFDDEVLIEPFIEGIEEYNLAGAKGQTFHFSKIEAVKKEKLLDFEK 238 Query: 207 SSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 L+ K + ++ + + I R DF K++ EIN Sbjct: 239 KYLDFGRSGEVKDASLNETLRLHIRNAFEKIYDPLFSGAIIRIDFFV--RDGKLYLNEIN 296 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 297 PVPGSLANYLF 307 >gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens] Length = 966 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 139/369 (37%), Gaps = 70/369 (18%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A++ GG S ER +SL+S ++ LE VS ++ Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172 Query: 40 -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S L HL+ D+ F LHG FGEDG +QA+LE +PY +G A Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232 Query: 87 SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + ++ DK + ++ G V + L F ++ + S V+KP + Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------- 187 GSS+G+ V + + + D+++IE + +G ++ D Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVA 352 Query: 188 ------------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 ++ + F + ++ P + + +++ A Sbjct: 353 LFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAADLF 412 Query: 236 QAIGCRGISRSDFLFDPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + R I+R D P + + +IN+ GM SI A+ G + ++L Sbjct: 413 RILNLRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQASLVGLAHVDILRT 472 Query: 292 MVEDASCLR 300 ++ A C R Sbjct: 473 LLRRA-CTR 480 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 P+ + ++ + + +G G +R D + +V +E N PGMTP + Sbjct: 878 PPPPSLATEEAIAGCKKRIEIVARTLGLDGFARIDAFMHADTGEVIIIEANTVPGMTPST 937 Query: 273 IFPEMAAY 280 + A Sbjct: 938 VLIHQALA 945 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36 VL GG SSER+VSL SG L VS Sbjct: 514 VLFGGDSSERQVSLISGTNVWLNLRAWNDLDVSPF 548 >gi|313682067|ref|YP_004059805.1| d-alanine/d-alanine ligase [Sulfuricurvum kujiense DSM 16994] gi|313154927|gb|ADR33605.1| D-alanine/D-alanine ligase [Sulfuricurvum kujiense DSM 16994] Length = 345 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 43/311 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAH---- 48 A+L GG S E E+S+ S L K ID + + + Sbjct: 4 AILFGGASYEHEISIVSAITVKEKLSRYELSFIFCDQDHKFYLIDGTKMKAVTFSRGEHR 63 Query: 49 --------------------LKPDL-AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 K D+ N++HG GEDG + ++L+ IP+ AS Sbjct: 64 KMPQIFLANGGFEQRGLFGSKKHDMPILNLIHGGDGEDGSIASLLDFFHIPFIGPRKEAS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 LS DK +K + +S G+ P ++++ + P++IKP + GSS+G+ +++++ Sbjct: 124 MLSFDKHYTKWLANSLGIKTLPYEILHKE-DKRAVKTAYPFIIKPARLGSSIGVSIVREE 182 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + + L ++ +LIE ++ G++ A ++ V + + Sbjct: 183 RELDYAL--DVAFEFDSVVLIEPFIAGVKEYNLAGFSARGEMNYSIVEEPQKAEFLDFEK 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQ----AIGCRGISRSDFLFDPLSRKVFWLEIN 263 + + + A + + + R DF + +V+ EIN Sbjct: 241 KYLDFSRSGNVAEASVSDTLVQQLRDAFKTIYLPLFEGALIRCDFF--EIEGEVYLNEIN 298 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 299 PIPGSMANYLF 309 >gi|27383340|ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110] gi|27356515|dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 20/297 (6%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHG--NFGEDG 66 + ++ +AL++ + D+ + L PD + FN+ +G Sbjct: 29 KTVESVVAALQEGNHDTLLCEGDKGLLATLERFMPPDSQARPSGIVFNMAYGIQGECRYT 88 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126 V A+LE+ +PYT S L AL++DK +KQ++ CGVP ++ R T + + Sbjct: 89 HVPAMLEMAGVPYTGSSPLGHALALDKAITKQLIRDCGVPTPNFRVMRRGTEST-GDLCF 147 Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 P V+KP +S G+ ++ + + + + + L+E+Y++G E+ ++G+ Sbjct: 148 PLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT-QYAQDALVEEYIEGREICVALLGNGE 206 Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIG 239 L+ + L + PA++ ++ ++ ++ +A Sbjct: 207 LEALPLVEQDFGERETRLITWEDKMHMAVVEPQKICPAQVGSNLATILRDISVATFRACR 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR +R D D S F LEIN + + + A AGY+F L+ +++ A Sbjct: 267 CRDYARVDIRID-RSGHPFVLEINSMAALGIGASYVLAAKAAGYTFSSLVNGILDVA 322 >gi|315105143|gb|EFT77119.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2] Length = 197 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 12/194 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANNGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L++IPY S +S DK + + V++ GV + + Sbjct: 65 GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 S P ++KP GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQMVMRSIAEKFSLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGD 184 ++ G D Sbjct: 183 FIVGNGTRNRHDHD 196 >gi|297620263|ref|YP_003708400.1| hypothetical protein wcw_0017 [Waddlia chondrophila WSU 86-1044] gi|297375564|gb|ADI37394.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 642 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 110/299 (36%), Gaps = 22/299 (7%) Query: 20 KACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI----LEL 74 AL+ F+ S D +++ + P N+ + D ++ +E+ Sbjct: 320 NQMKEALKKIENFQFSCFDDHKNLIRKFSQNPPPFVMNLCDEGWNNDPFMELHPTALMEM 379 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L+IPYT +G ++ +K + + S V V I ++ + P +IKP Sbjct: 380 LKIPYTGAGPECLSICYNKSTVRAIAQSMDVHVPSEIWIDPSNHSAAIPSIFPALIKPAY 439 Query: 135 GGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 G SS V+ + + + +LI++++DG E + GV+G+ Sbjct: 440 GDSSIGITQNAVVYSAEELVTYFDNLKAQMPNIPILIQEFLDGREFSVGVIGNGVSLEVL 499 Query: 192 IAVPKSD-------------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + A + + +++ + Q + Sbjct: 500 PILEVDYSGLPENLPKILGYESKWHPESPYCTHIRYHQAHLDESLARDLIDTSINLFQRL 559 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 CR +R DF D + LE N PG MA +AG + ELL +++ A+ Sbjct: 560 KCRDYARFDFRMDSQ-GEAKLLEANPNPGWCWDGKMALMAEFAGIQYHELLEKILKAAA 617 >gi|167749950|ref|ZP_02422077.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702] gi|167657117|gb|EDS01247.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702] Length = 354 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 134/346 (38%), Gaps = 57/346 (16%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAH---- 48 +AVL GG S++ SL + + S+L + I + R+ + + Sbjct: 6 IAVLFGGASADHAASLHTAYSVLSSLPKE-IEPLAIGITRAGRWLFYPGSYENIKDGSWE 64 Query: 49 ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 + D F VLHG +GEDG VQ + +L +P Sbjct: 65 QDSDCCSCVISPDMTNKGVIKIISDGESTIHRIDAVFPVLHGKYGEDGRVQGLCKLAGLP 124 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130 + A+AL D+ V+S + V ++ ++R M+ +S P Sbjct: 125 VIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAAIKKITGKLSFPIYT 184 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASL 187 P +S+G + ++ + + S S + ++ E V G ELTC V Sbjct: 185 APTSCSTSVGACRAENEKELEEAIKASFSHHPY--IIAESAVKGRELTCAVLGAKHHDER 242 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V D +Y + S +PAK+ ++++ A A+ A+ C+ +R D Sbjct: 243 VAIGELVRTDDSIDKLSEYIASTSELKVPAKLDGLTQNKIKQTARAAYDALSCKCFARVD 302 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + D +V+ + PG+ SIF + + YS+ E+L ++ Sbjct: 303 MVLD-NDGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347 >gi|282853024|ref|ZP_06262361.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|282582477|gb|EFB87857.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium acnes J139] gi|314922657|gb|EFS86488.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1] gi|314965740|gb|EFT09839.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2] gi|314982882|gb|EFT26974.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3] gi|315091191|gb|EFT63167.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4] gi|315094422|gb|EFT66398.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1] gi|327328918|gb|EGE70678.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1] Length = 197 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L++IPY S +S DK + + V++ GV + + Sbjct: 65 GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P ++KP GGSSLG+ + +P + ++++ + D +++E+ Sbjct: 125 LGAQMVMRSIAEKFGLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182 Query: 171 YVDGIELTCGVMGD 184 ++ G D Sbjct: 183 FIVGNGTRNRHDHD 196 >gi|153952610|ref|YP_001398281.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. doylei 269.97] gi|189083035|sp|A7H451|DDL_CAMJD RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|152940056|gb|ABS44797.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. doylei 269.97] Length = 346 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 110/310 (35%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S A + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSAVALKKVINQN-LEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIQQGGFFSKGFLKENKLECECVINLIHGGDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + + P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKGQNSKE-KLRFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCVINDKFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|317148223|ref|XP_001822597.2| hypothetical protein AOR_1_704134 [Aspergillus oryzae RIB40] Length = 375 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 118/324 (36%), Gaps = 49/324 (15%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNF--GEDGLVQAILELL 75 A A++++ G +V + + + + H + DLAF++ G G + + +LE Sbjct: 40 AIAASIQSNGHRVVCVGDIKELVQRMAREEHKEWDLAFSISEGMHGVGREAQIPGLLEAY 99 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------------MDSQ 121 IP+ S AL +DK ++K ++ G+P P +V M Q Sbjct: 100 HIPHVFSDAATLALCLDKGKTKMILEQFGIPTAPFAVVPASWTKADCTLTQLLEKTMHGQ 159 Query: 122 HLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 L S P IKP GSS GI + + + + G +LIE ++ G E T Sbjct: 160 KLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRFPGASILIETFLSGQEYT 219 Query: 179 CGVMGDASLDVTEIAVPKSD----------------FYSYELKYSSLNSTHVLPAKIPLD 222 ++G + + P + Sbjct: 220 VSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDGSFWDVNNKNGPDADEPE 279 Query: 223 IYKEVQRL---------AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VS 272 + + A A +A+ C + R D + + + LEIN PG+ P S Sbjct: 280 RFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GADNRPYVLEINPLPGLRPDWS 338 Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296 I A + G S +EL+ +++ A Sbjct: 339 ILARTAVHEGISHKELIGKVIDSA 362 >gi|217076423|ref|YP_002334139.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus TCF52B] gi|217036276|gb|ACJ74798.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus TCF52B] Length = 312 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 126/290 (43%), Gaps = 21/290 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77 +A +A+ + + D + + D FN+ + G V A+L+LL I Sbjct: 20 EAVKNAV-SKKYDCEVVQFDENFINKIK--GFDFVFNLSNKGGKETIQVHVPALLDLLNI 76 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 PYT S + +L +DK+ +K ++ +P + + + + + +++KP + GS Sbjct: 77 PYTSSNAYSHSLCLDKITTKIIMQHYNIPTPRFYVYDLGQTP-EKIDNGTFIVKPPREGS 135 Query: 138 SLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 + GI ++ +++ L+E+++DG EL+ G++G+ + Sbjct: 136 ARGISKDSVVDNLKALQKMVKYIHEEFKQPALVEEFIDGKELSVGIIGNGDSLEVLPILE 195 Query: 196 K----------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + ++ PA+I ++ ++++ A + + R +R Sbjct: 196 IDFSTLPEGLERFYSYNVKHNYGEMTNYICPARISNNVKEKLEFYAKKLFRVLNLRDYAR 255 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294 D ++++LE+N P + P S +MA AGY + +L+L ++E Sbjct: 256 MDVRI--RDDEIYFLEVNSAPQLVPVYSDITKMAKAAGYEYDDLILKILE 303 >gi|317177433|dbj|BAJ55222.1| D-alanyl-alanine synthetase A [Helicobacter pylori F16] Length = 347 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 4 CVLFGGASFEYEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHNGLLKSSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYVLLNEKNCANALNLIGFNFPFIIKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSSALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|307720863|ref|YP_003892003.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294] gi|306978956|gb|ADN08991.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294] Length = 345 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 113/324 (34%), Gaps = 47/324 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46 +L GG S E E+S+ S L + D D + LV Sbjct: 5 ILFGGASFEHEISIVSAITLKEKLSNFDLTFIFCDSDHTFYLVEASKMKAVTFSKGEHKK 64 Query: 47 ------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + N++HG GEDG + A+L+ I Y + A Sbjct: 65 MPVLTLAQGAFVQKSMFSKSEYNSVVLNLIHGADGEDGTIAALLDFYSIKYIGPRVDACT 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 S DK +K + + GV ++++ + P +IKP GSS+G+ ++K + Sbjct: 125 FSYDKRYTKYLCEAIGVKSVKYEVMHKNEHCNIQT-PYPIIIKPSSLGSSIGVSIVKDES 183 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + L + D +++E +++G++ A+ + V + + Sbjct: 184 ELDYALDVAF--EFDDTVIVEPFLEGVKEYNLAGYYANGAMHYSIVEEPHKEEFLDFEKK 241 Query: 209 LNSTHVLPA----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 + ++ ++ ++ + + R DF + +V EIN Sbjct: 242 YMDFSRSEQVLTADVSEELTLRLKTNFEKVYRGLFEGALIRCDFFV--FNDEVLLNEINP 299 Query: 265 QPGMTPVSIFPEMAAYAGYSFREL 288 PG +F + A S EL Sbjct: 300 IPGSMANYLFEDFA----VSLEEL 319 >gi|157962243|ref|YP_001502277.1| D-alanyl-alanine synthetase A [Shewanella pealeana ATCC 700345] gi|189083053|sp|A8H5A5|DDL_SHEPA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157847243|gb|ABV87742.1| D-alanine--D-alanine ligase [Shewanella pealeana ATCC 700345] Length = 334 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 120/308 (38%), Gaps = 32/308 (10%) Query: 11 EREVSLSSGKACASALEDA-GFKVSQIDVD---------------------RSVGLVLAH 48 E +SL S + L F V +++++ R A Sbjct: 16 EHSISLLSANFFEAQLATLPHFNVLRVELNAKGQYHTQAGELCELTNSQQLRFDDETKAP 75 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ EL+ +PY +S+ +K+ +K S+ G+P Sbjct: 76 WNVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSESSSNCFNKVTAKMWFSALGIPNT 135 Query: 109 PSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P I ++ F S IK GSS+G + + + L ++ +++ Sbjct: 136 PYIFLSEFNQQSLEQAEAALAKWGSIFIKAASQGSSVGCYRVDSIEQLASSLEEAFTFSP 195 Query: 163 G---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 ++ + + ++ A+ I + + E + + V+ A + Sbjct: 196 YVVIEKTITARELEVAAYEADGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADV 255 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I K++Q A A + + R +SR DF ++ EIN PG T +S+FP+M Sbjct: 256 DEAIAKQIQEYAIKAFKGMKLRHLSRIDFFLTE-DNEILLNEINTFPGQTQISMFPKMLQ 314 Query: 280 YAGYSFRE 287 G++F + Sbjct: 315 NHGHNFAQ 322 >gi|154148214|ref|YP_001406160.1| D-alanyl-alanine synthetase A [Campylobacter hominis ATCC BAA-381] gi|153804223|gb|ABS51230.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter hominis ATCC BAA-381] Length = 342 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 52/329 (15%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51 ++ GG S E E+S+ S + ++ V D DR+ L+ Sbjct: 4 GIIFGGQSYEHEISIVSAISLKKVIKKECAYVF-CDQDRNFYLIEPKNMIANYFSSGEYK 62 Query: 52 -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 D+ NV+HG GEDG + ++LE IP+ + A Sbjct: 63 KAKELTIASNGFYVNGMFSKTRVEADVFVNVIHGCDGEDGKLASLLEFFNIPFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S +S DK +K + + G+ ++ T+ S I P ++KP GSS+GI ++K Sbjct: 123 SVISYDKELTKNLAKAAGIKTIEYQIIKSSTLPS---IPYPLIVKPSHLGSSIGIKIVKN 179 Query: 147 DQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + + + IE + C + G+ + E ++ Sbjct: 180 HNELSYAIDTAFELDSSAIIEPYIEDVKEYNLAGCKIDGEIEFSIIEEPQKDKFLDYFQK 239 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEIN 263 S A + L + ++ + G I R DF ++ +V+ EIN Sbjct: 240 YMDFSRSGKPQEANLGLSVKDNMKEAFRRVYNYGEFDGAIIRCDFFV--INNEVYLNEIN 297 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 PG +F F ++L + Sbjct: 298 PNPGSLANYLFN--------DFNDVLNRL 318 >gi|328956078|ref|YP_004373411.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] gi|328456402|gb|AEB07596.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2] Length = 375 Score = 93.8 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 65/375 (17%), Positives = 121/375 (32%), Gaps = 80/375 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACAS--------------------ALEDAGFKVSQIDV-- 38 +AV+MGG S ERE SL SG A AL V+ I V Sbjct: 3 VAVIMGGTSLEREFSLKSGHRIARELEAKDHIVLPLDATSELTCALRSGRPDVALIAVHG 62 Query: 39 ----DRSVGLVLAHLKPDLA-------------------FN---VLHGNFGEDGLVQAIL 72 D ++ +L L+ FN + H + ED Sbjct: 63 LGGEDGAIQGLLEFLRIPYVGSTSESCRASWNKVDLPRAFNSYLLAHPDRLEDASASRSA 122 Query: 73 ELLEIPYTHS-------------GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 H L + + S+ Sbjct: 123 HERGCSSEHPADQLDAVFSRVGSDCARDMLPNNPLIPTPKTFCLTEVAFRSMGAAAALDL 182 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +KP GGS++G+ + +++ ++ + + D+++I+++++G+EL+ Sbjct: 183 VCDRLGYPVAVKPACGGSAMGVSRVGCQEALGEAIMGAL--SFDDKVIIQEWLEGVELSV 240 Query: 180 GVMG---------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 + T A Y + + D+ Sbjct: 241 AICCGQDGAARSLTPVEIAPKETFFTTAARLDPSAVDYFAPVREESLVANGHGRSADDLD 300 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + R A A A+GCR ++R D + + +++ V PGM+ S+ P A +G+ Sbjct: 301 SLIARTALDAFCALGCRDLARVDMML--SDGVAYVIDVKVAPGMSENSLLPMAVAASGFD 358 Query: 285 FRELLLWMVEDASCL 299 ++ +V A+ Sbjct: 359 LGDIFDGLVRRAAVR 373 >gi|283781146|ref|YP_003371901.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068] gi|283439599|gb|ADB18041.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068] Length = 342 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 15/288 (5%) Query: 24 SALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80 AL + G +I R++ L A DL N+ G G + V AIL++ IPYT Sbjct: 37 QALAELGHTSDRIGSARALMARLTAGDDWDLVLNIAEGIEGMGREAQVPAILDVYGIPYT 96 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 S L +L++ K +KQV+++ G+P P ++++ + P KP+ G+S G Sbjct: 97 FSDPLVMSLTLHKGLTKQVLAAAGLPTAPFAVISKLEDLEGLTLPYPLFAKPIAEGTSKG 156 Query: 141 IIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-------CGVMGDASLDVTE 191 + + + + H +L+E Y+DG E T SL++ Sbjct: 157 VTSLSKVTSPEALRAICEHLLREHQQSVLVETYLDGREFTTGLLGEGVSTRVLGSLEIKL 216 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLF 250 + Y+Y K + + D + KEV+ L+ + +GCR R D Sbjct: 217 RSDSDQVGYTYRNKENCEELIIYDLIRPADDPLVKEVEALSLATWKTLGCRDAGRVDIRC 276 Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDAS 297 D L K + LE+N G+ P S P +A G ++ EL+ ++ A+ Sbjct: 277 DSL-GKPYLLEVNPLAGLHPEHSDLPMLATKIGMTYTELIGAIIACAT 323 >gi|261838029|gb|ACX97795.1| D-alanine:D-alanine ligase A [Helicobacter pylori 51] Length = 347 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S AL+ D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIVLKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRTNALNLIGFNFPFIVKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF + +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IKNEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|283954371|ref|ZP_06371892.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] gi|283794170|gb|EFC32918.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 414] Length = 346 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVS-SVVLKKVINQNLEFIFCDEERRFYHIPDEKMNSKTFNTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ D N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECDCVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 SALS +K +K S GV ++ + + LI P +IKP + GSS+GI ++K Sbjct: 123 SALSFNKELTKLYAKSIGVKTLDYTMLRKGQNFKEKLI-FPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLLVEEFKSDIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ +++ + + + R DF L +V+ EIN Sbjct: 242 YLSFSGHNELIEADLGEELKTKLKDNFKKIYNPLFKGALIRCDFFV--LDNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|118474718|ref|YP_891983.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. fetus 82-40] gi|118413944|gb|ABK82364.1| D-alanine--D-alanine ligase [Campylobacter fetus subsp. fetus 82-40] Length = 345 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 109/314 (34%), Gaps = 51/314 (16%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46 ++ GG+S E E+S+ S A AL+ ++S I VD+ L Sbjct: 4 GIVFGGVSFEHEISIVSAIAVKKALK---CELSFIFVDKFGDFYLINSDDMRANFFSSHK 60 Query: 47 ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 L D N++HG GEDG + + E + + + Sbjct: 61 YKNSKKLHLKKGGFAAHGIFGMNDLNVDCYINLIHGRDGEDGKIAGMFEFYNVTFIGPRL 120 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 AS +S +K +K + C V P ++ R + P+++KP + GSS+G+ V+ Sbjct: 121 EASVMSFNKELTKLLAHKCAVKSLPYEMIKRGDIV---KTELPFILKPARLGSSIGVSVV 177 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + ++ L + +L+E + +GI A D + + + Sbjct: 178 RDISNLDYALDVAF--EFDKDILVEPFKEGIREFNLAGFKAENDFIYSFIEEPKKNDFLD 235 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG----CRGISRSDFLFDPLSRKVFWL 260 S AK + + + R DF +V+ Sbjct: 236 FEQKYMSFSSSCAKEADIDDSLKIEIKDAFAKIYNGGNFDGALIRCDFFVL--DNEVYLN 293 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 294 EINPNPGSMANYLF 307 >gi|315638159|ref|ZP_07893341.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21] gi|315481695|gb|EFU72317.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21] Length = 347 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 110/312 (35%), Gaps = 45/312 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S L++ + D +R L+ Sbjct: 5 AILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAYK 63 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ N++HG GEDG + A+ E I + + A Sbjct: 64 KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV + + + P ++KP++ GSS+GI + Sbjct: 124 SVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQT-SFKPNFPCILKPVRLGSSIGISIANN 182 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + D LL+E + I+ ++ + + + Sbjct: 183 EEELN--YGKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIKDELIFSIIEEPKKKEFLDFE 240 Query: 207 SSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 S A + ++ ++++ + + + R DF +V+ EI Sbjct: 241 QKYLSFSGHSELIEADLSEELKEKLKEAFSKIYNPLFKGALIRCDFFIL--DNEVYLNEI 298 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 299 NPNPGSLANYLF 310 >gi|881495|gb|AAA68950.1| unknown [Thermotoga maritima MSB8] Length = 128 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 1/94 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59 +A+LMGG+S ERE+SL SG+ ALE G++ + DV + LK D+ FNVLH Sbjct: 13 VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 72 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 G FGEDG +QAIL+ L I YT S +S + DK Sbjct: 73 GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDK 106 >gi|300088096|ref|YP_003758618.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527829|gb|ADJ26297.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 330 Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 126/311 (40%), Gaps = 25/311 (8%) Query: 9 SSE--REVSLS-SGKACASALEDAGF--KVSQIDVDRSVGLVLAHLKPDLAFNVLHG--- 60 S E E+S++ + A + L + G +V + D S+ FN+ G Sbjct: 18 SGESIAELSVADTATAVTAMLSELGHQVEVVPLSPDESITGRRELSDAGFVFNLFEGFAG 77 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + V LE +P+T + AL++DK + V+ G+ L++ Sbjct: 78 RPETEAAVARALENTGLPFTGCPASSLALTLDKPATHLVLGYAGLATPRFQLLDPADTAD 137 Query: 121 QHLISPPYVIKPLKGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++KP +S V + + + L + + L+E++++G E Sbjct: 138 -FDLDFPCIVKPPADDASHALSPESVAAGREELAIALNRIAKRYPDSPALVEEFLNGREF 196 Query: 178 TCGVMGDASLD-------VTEIAVPKSDFYSYELKY-----SSLNSTHVLPAKIPLDIYK 225 V+G+ S + + ++ K+ ++ PA + + Sbjct: 197 NVTVLGNNSPRLLAVSEIIYTLPTGCPRLLTFAAKWSPDSAYYRHTAVRCPAVLDNSLAA 256 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E++ A A +A GCRG +R DF + + LE+N P ++P + A AG ++ Sbjct: 257 ELEHAALTAFRATGCRGYARMDFRLNAA-GRPVILEVNANPDLSPEAGVARQAEAAGMTY 315 Query: 286 RELLLWMVEDA 296 REL+ +V+ A Sbjct: 316 RELIDAIVKLA 326 >gi|254464679|ref|ZP_05078090.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] gi|206685587|gb|EDZ46069.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales bacterium Y4I] Length = 336 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 12/288 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLE 76 A +AL G + +I R + LA + DL FN+ G + V A+LE Sbjct: 33 AAIENALHARGHQTQRIGHVRILAQRLAAGDRWDLVFNIAEGLQGRAREAQVPALLEAFG 92 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPY+ S L AL +DK +K+VV G+P P ++ DS + P +KPL G Sbjct: 93 IPYSFSDPLTQALGLDKAMAKRVVRDAGIPTAPFAVLETPADDSGLDLPFPIFLKPLAEG 152 Query: 137 SSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 + G K + +L E ++ G E T G++G+ + + Sbjct: 153 TGKGCEHASKANGADQAAAAARSLRQRFRQPVLAESFLPGREFTVGILGNGADARVIAVM 212 Query: 195 PKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 + Y + T V+ + A A+ A+GCR +R D Sbjct: 213 EILLLDTAEAEIYSFQNKQQWETRVIYRLADDAEARAAGAAALAAYHALGCRDAARIDLR 272 Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 D +LE+N PG+ P S P ++A AG ++ L+ +++ A Sbjct: 273 SDAA-GIPNFLEVNTLPGLHPSHSDLPILSAKAGLDYQGLIGGILDAA 319 >gi|144897235|emb|CAM74099.1| D-alanine--D-alanine ligase [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%) Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTP 270 +PA IP + Y E RLA AH+ +GCRG+SR+D +D ++ LE+N QPGMT Sbjct: 1 MPAPIPAEDYAEACRLAVEAHRVLGCRGVSRADLRYDDTKPGQKPRLIVLEVNTQPGMTA 60 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 S+ P++A+Y G SF EL+ WMVE A C Sbjct: 61 TSLVPDIASYCGISFPELVRWMVEQAECD 89 >gi|108563147|ref|YP_627463.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPAG1] gi|122980504|sp|Q1CTD3|DDL_HELPH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|107836920|gb|ABF84789.1| D-alanine:D-alanine ligase A [Helicobacter pylori HPAG1] Length = 347 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52 VL GG S E E+S+ S A L+D I+ A +K Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEASNMHSKYFAQIKEK 63 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHKGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDHVLLNEKNRANAMDLINFNFPFIIKPNSAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELNYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa] gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa] Length = 931 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 139/380 (36%), Gaps = 81/380 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++ GG S+ER +SL+S ++ +E +VS +D Sbjct: 84 VGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADF 143 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE +P+ +G Sbjct: 144 DFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRE 203 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135 + DK + +S G PS LV FT + S V+KP + Sbjct: 204 CRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARA 263 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------------IEL 177 GSS+G+ V S D++L+E +++G + Sbjct: 264 GSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCHPVV 323 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + + ++Y KY + + P + PL + + ++ A + + Sbjct: 324 LLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASILFR 383 Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280 +G R +R D F P S + + +IN+ GM S + A+ Sbjct: 384 QLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQASK 443 Query: 281 AGYSFRELLLWMVEDASCLR 300 G+S +L ++ A CLR Sbjct: 444 VGFSHSNILRSVIHRA-CLR 462 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + + + L + G SR D + S +V +E+N PGMTP ++ A Sbjct: 849 NEALERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 908 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 3 VLMGGISSEREVSLSSGKAC 22 VL GG +SER+VSL SG Sbjct: 500 VLFGGDTSERQVSLMSGTNV 519 >gi|291447622|ref|ZP_06587012.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|291350569|gb|EFE77473.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998] Length = 332 Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 22/314 (7%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------DVDRSVGLVLAHLKPDLA 54 +AV+ GG ++E E +L S + A A + G S + + +L + D+A Sbjct: 17 IAVIAGGRTAEAEGTLGSAEQLARAAAELGHHTSLVSVEAAGHPQDRMSALLKAAEHDVA 76 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112 ++ G ++ LE L++PY S +A+ ++ K ++ + G+ + Sbjct: 77 IPLIPG-------LEGTLEFLDVPYVGSSPVAAGIAAHKGLFNDLLVAAGLGKVRYVYGS 129 Query: 113 -VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +M + +S P +KP + G+S GI + + + ++ + + Sbjct: 130 GPEVLSMWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAINAAAEHDPVVLIEESVP 189 Query: 172 VDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E ++ + + ++ + ++ Sbjct: 190 TPFTEYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELDSR 249 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A A G +R D D +V+ EIN PG S FP + AG+S Sbjct: 250 LMEAALAAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFSRP 308 Query: 287 ELLLWMVEDASCLR 300 L M++ A R Sbjct: 309 RQLELMIDSALFHR 322 >gi|330884029|gb|EGH18178.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 91 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 53/85 (62%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL GG S+ER VSL+SG A AL DAG IDV L K D AF VLHG Sbjct: 6 VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 65 Query: 61 NFGEDGLVQAILELLEIPYTHSGIL 85 GEDG +Q +LE LEIPYT SG+L Sbjct: 66 RGGEDGTMQGLLECLEIPYTGSGVL 90 >gi|149922566|ref|ZP_01910996.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1] gi|149816593|gb|EDM76088.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1] Length = 338 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 20/290 (6%) Query: 26 LEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPY 79 LE+ G V + V S+ L +P + FN+L G+ LV A LEL + Y Sbjct: 43 LENYGHTVLVVGVSDSLEPLERALDEFRPHVVFNLLEEFQGSRAGSHLVLAYLELRGVAY 102 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG-GSS 138 T ++ DK SK ++ GV ++V + + P ++K L G S Sbjct: 103 TGCNPRGQMMAQDKALSKALLLHYGVQTPDFVVVPVGRKPPRKRLRFPLIVKSLHGDASE 162 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 L H L+E+Y+ G EL CGV+G L + + Sbjct: 163 GLAQASVVRSPSKLAARVDFIHRHHGDALVEEYISGRELYCGVIGYRQLTAFPVWELRMT 222 Query: 199 FYSYELKYSSLNSTHVL------------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + PA++P + + +Q ++ A + G R Sbjct: 223 KLPTSALNIATQRVKWDLAYQDRVGVELGPARLPPALERRIQDMSKRAFSLLKMTGWGRM 282 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D+ + ++LE N + V F A AG S+ ELL ++ A Sbjct: 283 DYRL-AEDGEPYFLEANPNGDIAHVEEFASSAKAAGLSYLELLHRLINIA 331 >gi|317178905|dbj|BAJ56693.1| D-alanyl-alanine synthetase A [Helicobacter pylori F30] Length = 347 Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 108/312 (34%), Gaps = 41/312 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D ++ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEVLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTRNGLLKSSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIGFNFPFIIKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 +K+++ + L + ++ + G + I P + Sbjct: 184 VKEEKELIYALDGAFEYSKEVLIEPFIQEVKEYNLAGCKIKKDFCFSYIEEPNKQEFLDF 243 Query: 204 LKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 + S + P + ++++ + + + R DF +V+ EI Sbjct: 244 KQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLNEI 301 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 302 NPIPGSLANYLF 313 >gi|218508112|ref|ZP_03505990.1| D-alanine-D-alanine ligase protein [Rhizobium etli Brasil 5] Length = 184 Score = 92.2 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--- 182 P IKP + GSS+G+ + Q L ++ H LL E++V G E+ V+ Sbjct: 2 LPLFIKPARQGSSVGVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLEDA 59 Query: 183 ----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + A + + +PA++P ++ ++ +A A +A+ Sbjct: 60 AGDLFVSRPGEIVPAENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAV 119 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--A 296 GC G++R DF + EIN PG T +S++ + A +G S+ E++ +V+ A Sbjct: 120 GCDGMARVDFFLT-SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMA 178 Query: 297 SCLR 300 R Sbjct: 179 RAGR 182 >gi|208434649|ref|YP_002266315.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27] gi|208432578|gb|ACI27449.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27] Length = 349 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 119/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG+S E E+S+ S A L+D I+ + + Sbjct: 6 CVLFGGVSFEHEISIVSAIALKGVLKDRIKYFLFLDENHHFYLIEESNMHSKYFAQIKEK 65 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 66 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 126 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIEFNFPFIVKPSNAGSSLGVNV 185 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFY 200 +K+++ + L + + ++LIE ++ G++ + K +F Sbjct: 186 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPSKQEFL 243 Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 ++ KY + A + + ++++ + + I R DF +V+ Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 301 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 302 EINPIPGSLANYLF 315 >gi|78777406|ref|YP_393721.1| D-alanyl-alanine synthetase A [Sulfurimonas denitrificans DSM 1251] gi|123550178|sp|Q30R95|DDL_SULDN RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|78497946|gb|ABB44486.1| D-alanine--D-alanine ligase [Sulfurimonas denitrificans DSM 1251] Length = 345 Score = 92.2 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 43/310 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49 +L GG S E E+S+ S L + D D + L+ A Sbjct: 5 ILFGGASFEHEISIVSAITLKEKLSNFELNFIFCDQDHTFYLINASKMRATTFSRGEYKK 64 Query: 50 ------------------KPDL---AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 D+ N++HG GEDG + AIL+ I Y + AS Sbjct: 65 MPKLTLSHGSFVQKSLFGSVDISGTVLNLIHGGDGEDGTIAAILDFFSIKYIGPRVDASV 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 S DK +K + + GV S + S I+ P ++KP + GSS+G+ ++K + Sbjct: 125 FSYDKRYTKWLCHARGVKCVES-QELSSSEHSNIKIAYPIIVKPSRLGSSIGVSIVKDES 183 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + L + + +++E +++G++ A + + + Sbjct: 184 KLDYALDSAF--EFDNTVIVEPFLEGVKEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKK 241 Query: 209 LNST----HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 +V A+I ++ +++ ++ + + R DF ++ +VF EIN Sbjct: 242 YMDFSRSGNVDSAEISKELESKLRASFEKVYKNLFEGALIRCDFFV--VNGEVFLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 IPGSMANYLF 309 >gi|307747710|gb|ADN90980.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni M1] Length = 346 Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 111/310 (35%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + + P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLRFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|57237643|ref|YP_178891.1| D-alanyl-alanine synthetase A [Campylobacter jejuni RM1221] gi|121612276|ref|YP_001000487.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81-176] gi|167005423|ref|ZP_02271181.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81-176] gi|81353739|sp|Q5HUZ4|DDL_CAMJR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|189083036|sp|A1VZE6|DDL_CAMJJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|57166447|gb|AAW35226.1| D-alanine--D-alanine ligase [Campylobacter jejuni RM1221] gi|87249415|gb|EAQ72375.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|315058252|gb|ADT72581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni S3] Length = 346 Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV +V + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +++ EIN Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|317010958|gb|ADU84705.1| D-alanyl-alanine synthetase A [Helicobacter pylori SouthAfrica7] Length = 347 Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 119/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEKSNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + + A Sbjct: 64 KLPPLMLAHNGLLKNSFLGTKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K S GV IL+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKHLTKLYAKSLGVKTLDHILLNEKNRANALDLINFNFPFIVKPNSAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +++++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VREEKELAYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P IP + ++++ + + I R DF + +V+ Sbjct: 242 DFKQKYLDFSRAKAPKADIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLAHYLF 313 >gi|205356768|ref|ZP_03223527.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345335|gb|EDZ31979.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 346 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV +V + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +++ EIN Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|317012549|gb|ADU83157.1| D-alanyl-alanine synthetase A [Helicobacter pylori Lithuania75] Length = 347 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + + A Sbjct: 64 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIIKPNSAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLAHYLF 313 >gi|86153489|ref|ZP_01071693.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843215|gb|EAQ60426.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 346 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 113/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFNKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|239617317|ref|YP_002940639.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1] gi|239506148|gb|ACR79635.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1] Length = 321 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 23/296 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEI 77 +A AL + +D + D AFN+ G AIL+ L + Sbjct: 20 EAVIRAL-SKKHDSQPLPIDEKFMETVKE--YDFAFNLSTGGGKLSKQVHAPAILDRLGV 76 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137 P+T S + A+ +DK +K ++ G+P + ++ + P +KP GS Sbjct: 77 PFTGSSAIVHAICIDKSITKLILEKSGIPTPRFVKIDDPNNIPEIDF-YPAFVKPSCEGS 135 Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 +LGI V+K + + + + ++E+++DG E T G++G+ + + Sbjct: 136 ALGISRDSVVKNQKELKKQVEMIMN-KFNQPAIVEEFIDGREFTVGIIGNGNDLKVLPIL 194 Query: 195 -------PKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 P+ + Y + +T++ PA++ K+++ A A +AIG + Sbjct: 195 EIDFSNLPEGLEHFYSHRVKHHYGEKTTYICPARLEESQRKKLENYAKRAFKAIGLFDFA 254 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299 R D + + +E+N P + P S +M A G+ + +L+ ++E A Sbjct: 255 RIDVRMRV--NEFYIIEVNSLPLLVPVYSDLTKMLAPIGWKYEDLVNAILEAAIAR 308 >gi|242309199|ref|ZP_04808354.1| ligase [Helicobacter pullorum MIT 98-5489] gi|239524240|gb|EEQ64106.1| ligase [Helicobacter pullorum MIT 98-5489] Length = 345 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 110/311 (35%), Gaps = 43/311 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------SVGLVLA 47 VL GG S E E+S+ S L D I D+ S L Sbjct: 4 CVLFGGSSYEHEISIVSAITLKKLLPSIETFVFLDGNHNFYLIPKDKMQSKFFSSKEYLK 63 Query: 48 HLKPDL--------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 +K L N++HG GE+G++ ++L+ I Y A Sbjct: 64 EMKIYLKVGGFYHKTLLGEKKLPMPMVLNLIHGGDGENGVIASLLDFYGIAYIGPRNPAC 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 LS DK +K + + G+ V + P +IKP + GSS+GI + Sbjct: 124 VLSFDKELTKLLAKNRGILSLDY-QVLYKGAQKEIKFPFPVIIKPARLGSSIGIFIANNQ 182 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--- 204 + + L ++ + ++ ++E ++ GI+ ++ + V + + Sbjct: 183 KELDYGL--EEAFEYDNKAIVEPFISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFEK 240 Query: 205 -KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 + + A IP + K +Q ++ + + R DF + EIN Sbjct: 241 KYLDFSRTQNAKEADIPEALQKTLQDNFIKIYENLFEGALIRCDFFV--KDDLCYLNEIN 298 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 299 PIPGSMANYLF 309 >gi|157415069|ref|YP_001482325.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni 81116] gi|189083034|sp|A8FLL1|DDL_CAMJ8 RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|157386033|gb|ABV52348.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 81116] gi|315931216|gb|EFV10188.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 346 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|57242125|ref|ZP_00370065.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195] gi|57017317|gb|EAL54098.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195] Length = 346 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 110/312 (35%), Gaps = 45/312 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S L++ + D +R L+ Sbjct: 4 AILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ N++HG GEDG + A+ E I + + A Sbjct: 63 KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV + + + P ++KP++ GSS+GI + Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQT-SFKPNFPCILKPVRLGSSIGISIANN 181 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + D LL+E + I+ ++ + + + Sbjct: 182 EEELN--YSKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIGDELIFSIIEEPKKKEFLDFE 239 Query: 207 SSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 S A + ++ ++++ + + + R DF +V+ EI Sbjct: 240 QKYLSFSGHSELIEADLSEELKEKLKESFSKIYNPLFKGALIRCDFFIL--DNEVYLNEI 297 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 298 NSNPGSLANYLF 309 >gi|332673460|gb|AEE70277.1| D-alanine-D-alanine ligase [Helicobacter pylori 83] Length = 356 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A AL+D I+ + + Sbjct: 13 CVLFGGASFEHEISIVSTIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 72 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 73 KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 132 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 133 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 192 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 193 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 250 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 308 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 309 EINPIPGSLANYLF 322 >gi|109947256|ref|YP_664484.1| D-alanyl-alanine synthetase A [Helicobacter acinonychis str. Sheeba] gi|123066260|sp|Q17XZ1|DDL_HELAH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|109714477|emb|CAJ99485.1| D-alanine-D-alanine ligase [Helicobacter acinonychis str. Sheeba] Length = 350 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 112/314 (35%), Gaps = 43/314 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52 VL GG S E E+S+ S A L+D I+ A +K Sbjct: 5 CVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEASNMHSKYFAQIKEK 64 Query: 53 --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L N++HG GEDG + ++LE I + S + A Sbjct: 65 KLPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGSRVEA 124 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGI 141 S LS +K +K + GV IL+N + + P+++KP GSSLG+ Sbjct: 125 SVLSYNKHLTKLYAKNLGVKTLDCILLNEKNRANALDLIKPSFNFPFIVKPNNAGSSLGV 184 Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 V+K+++ + L + ++ + G + + P + Sbjct: 185 SVVKEEKELAYALDGAFEYSKEVLIEPFIQRVKEYNLAGCKIKEDFCFSYVEEPNKQEFL 244 Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P IP + ++++ + + I R DF + +V+ Sbjct: 245 DFKQKYLDFSRTKAPKANIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVYLN 302 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 303 EINPIPGSLANYLF 316 >gi|315453894|ref|YP_004074164.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC 49179] gi|315132946|emb|CBY83574.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC 49179] Length = 344 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 113/314 (35%), Gaps = 46/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-DVDRSVGLV--------------- 45 VL GG+S E E+S+ S A L + D R+ L+ Sbjct: 4 GVLFGGVSYEHEISIVSAVALKEVL-GTKIECFIFLDGARNFYLISSKDMRSNFFAKGQY 62 Query: 46 --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L + N++HG GEDG + ++LE +P+ + Sbjct: 63 KKCPKLVLKQNGFYMQGFLGEKQLNFSMLINLVHGGDGEDGKLASMLEFFNLPFIGPRVE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 A +SM+K +K GV V P + ++ + + P + KP GSS+GI VI Sbjct: 123 ACTVSMNKYFTKMFAKERGVKVLPYVFLDSHDNSALENLDYPLIAKPNHLGSSIGISVIH 182 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYS 201 + + + + Q ++E + G++ C + K + Sbjct: 183 EPKDV--AYGLDEVFEFDSQAIVEPFKAGVKEYNLAGCMGQDGEFIFSMIEEPTKKELLG 240 Query: 202 YELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 +E KY + + A I + ++Q + + R DF + +++ Sbjct: 241 FEEKYLDFGRTQTISKANISPHLELQMQNAFKKLYDPFFIGALIRCDFFV--IDNEIYLN 298 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 299 EINPIPGSLAHYLF 312 >gi|300863798|ref|ZP_07108724.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC 6506] gi|300338199|emb|CBN53870.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC 6506] Length = 329 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 14/286 (4%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80 + L G KV +I R + L L + DL FN+ G + V A+ EL PYT Sbjct: 39 NTLCGLGHKVERIGNGRELALRLVKGDRWDLIFNIAEGLKGRSREAQVPAVCELFAQPYT 98 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 S L AL++DK +K+VV G+P P +V+ + P +KP+ GSS G Sbjct: 99 FSDPLTCALTLDKAMTKRVVRDFGLPTAPFEVVSTSEQAIAISLPMPLFLKPIAEGSSKG 158 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 I + + Q+ +L+E ++ G E+ G++G+ + + Sbjct: 159 ITEKSLVKESQDLVAVYQALQEEFQQPVLVETFLPGKEIAVGIVGNGNQARVIAVMEIIF 218 Query: 199 FYS-----YELKYSSLNSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 Y V P + + ++LA + ++GC +R + D Sbjct: 219 TKKAEIAAYTALNKDKYLERVSYRLLTDPEPLAAQARQLALDVYHSLGCLDAARVELRGD 278 Query: 252 PLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 ++ ++ +LE+N G+ P+ S MA AG + +L+ +VE A Sbjct: 279 -VTGELQFLEVNPLSGIHPINSDLVIMARLAGIEYAQLIGEIVESA 323 >gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor] gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor] Length = 945 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 72/381 (18%), Positives = 134/381 (35%), Gaps = 82/381 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 + ++ GG S ER VSL+S ++ ++ V +D Sbjct: 74 VGLICGGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFAISPAQLYSNTPSDF 133 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE +P+ + Sbjct: 134 DFKLESLAQGFDSLSDFAEHLAINVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKE 193 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135 + DK + +++ G P+ LV F + + + ++KP + Sbjct: 194 CERAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRA 253 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEI 192 GSS+G++V + S D+++IE +++G +G A+ + Sbjct: 254 GSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVV 313 Query: 193 AVPKSDFYSYELKYSSLNST---------------HVLPAKIPLDIYKEVQRLAFLAHQA 237 +P Y + T + P + P ++ +++ L + Sbjct: 314 LLPTEVELQYSNSSDTDEDTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRR 373 Query: 238 IGCRGISRSDFLF------------------DPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 G +R D F + V + +IN+ GM S + A+ Sbjct: 374 FGLHDYARVDGWFLPSPVASLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQAS 433 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G+S +L +V+ A C R Sbjct: 434 AVGFSHSRILRTVVQHA-CSR 453 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + D + ++ + A+G G SR D + S +V +E+N PGMTP ++ A Sbjct: 861 MGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQA 920 Query: 279 AY 280 Sbjct: 921 LA 922 Score = 42.2 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK 32 V+ GG +SER+VSL SG L+ GF Sbjct: 491 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 518 >gi|222823640|ref|YP_002575214.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100] gi|254767723|sp|B9KFX8|DDL_CAMLR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|222538862|gb|ACM63963.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100] Length = 346 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSG---KACASA------LEDAGFKVSQID-------------VD 39 V+ G S E E+S+ S K A + + ID Sbjct: 4 GVIFGANSYEHEISIVSAVVLKKVLKAQKKFIFCDKNK-EFFLIDEEKMNAKTFSSGAYK 62 Query: 40 RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + LVL D+A N++HG GEDG + A+L+ I Y I A Sbjct: 63 KEKALVLKQGGFFIKTMLGEKKLDMDVAVNIVHGKDGEDGKIAALLDFYGIKYIGPRIEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + +S P ++KP + GSS+GI ++K Sbjct: 123 SVLSFNKALTKLYAQSVGVKTLDYKVL-NLHKEQNVSLSFPCILKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + ++ + + + C + + E + Sbjct: 182 ESELKYAKDVAFEFDEDVVVEQFVSNIKEYNLAGCMIGEKMEFSIIEEPRKNEILDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S+ V A I ++ ++++ + + + R DF + +V+ EIN Sbjct: 242 YLGFSESSKVSEANISEELKQKLRDNFTRIYNPLFKGALIRCDFFV--IDDEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From Helicobacter Pylori Length = 367 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 24 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 83 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 84 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 143 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P+++KP GSSLG+ V Sbjct: 144 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 203 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 204 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 261 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF +V+ Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE--NEVYLN 319 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 320 EINPIPGSLANYLF 333 >gi|66816919|gb|AAY56773.1| D-alanine-D-alanine ligase [Helicobacter pylori] Length = 347 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|307322893|ref|ZP_07602187.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891461|gb|EFN22353.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 321 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 11/303 (3%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 +L GG S+ER SL + A L+ V +D D L+ A + D NV++G Sbjct: 20 VLLAGGSSTERGGSLETKNALLPYLQKLCRSVEVVDPDEVDHLLSAVRQCDFVLNVVYGA 79 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFT 117 GEDG +Q L+ L +PY+ +LASA+ M+K ++ + G PV L + T Sbjct: 80 GGEDGRIQGFLDTLRVPYSGPSVLASAIGMNKEVFVALLRAWGYPVPYGRLATTLEDPRT 139 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + S V+KP+ GSSLGI ++ + + Q + + +E++++G Sbjct: 140 WPRELQQSKVLVLKPIDEGSSLGIKMLDGQAASAEAISQIEPCDR-SRWRLEEFIEGASG 198 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 T G+ V AV + + + V+ A +Q Sbjct: 199 TVGIFQVGPEFVIGDAVVFDIPDGRRF-FDDQLKIRPKSRILHGPAAERVRNDALTLYQQ 257 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + C+G+ R DF++ +LE+N PG+ P S P +SF + L + A+ Sbjct: 258 LNCKGLVRLDFIY--RDSAPVYLEVNTIPGLHPDSTAPLSFQSR-FSFEDFLT--LSTAA 312 Query: 298 CLR 300 +R Sbjct: 313 QIR 315 >gi|167623784|ref|YP_001674078.1| D-alanyl-alanine synthetase A [Shewanella halifaxensis HAW-EB4] gi|189083051|sp|B0TRK1|DDL_SHEHH RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|167353806|gb|ABZ76419.1| D-alanine--D-alanine ligase [Shewanella halifaxensis HAW-EB4] Length = 333 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 36/310 (11%) Query: 11 EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51 E +SL S + L F V +++++ + + P Sbjct: 16 EHSISLLSANFFETQLATLPHFNVLRVELNAKGQYRTQAGELCELTNSKQIRFNDQSKAP 75 Query: 52 ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +HG GE G +Q+ EL+ +PY AS+ +K+ +K S+ G+ Sbjct: 76 WDVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASSNCFNKVTAKMWFSALGIRNT 135 Query: 109 PSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 P I +N F IK GSS+G + + + L ++ + Sbjct: 136 PYIFLNEFNQQAIEETERALEKWGSIFIKAASQGSSVGCYRVDNKEQLANSLEEAF--KY 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +++E+ ++ EL + + + + + + Sbjct: 194 SPYVVVEKTINARELEVAAYEVDGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEA 253 Query: 223 -----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 I K++Q A A + + R +SR DF ++ EIN PG T +S+FP+M Sbjct: 254 DVDEVIAKQIQEYAIKAFKGMKLRHLSRIDFFLTDE-NEILLNEINTFPGQTQISMFPKM 312 Query: 278 AAYAGYSFRE 287 G++F + Sbjct: 313 LQNHGHNFAQ 322 >gi|86150203|ref|ZP_01068430.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|218562426|ref|YP_002344205.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095570|sp|Q9PPC2|DDL_CAMJE RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|85839319|gb|EAQ56581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360132|emb|CAL34926.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926044|gb|ADC28396.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni IA3902] Length = 346 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +++ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|88597497|ref|ZP_01100731.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|88190089|gb|EAQ94064.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 84-25] Length = 346 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDKERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +++ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|255029325|ref|ZP_05301276.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28] Length = 170 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+DF ++F Sbjct: 58 FYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLF 116 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 E+N PG TP S++P + G + L+ +V+ A Sbjct: 117 LNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 154 >gi|134081480|emb|CAK46493.1| unnamed protein product [Aspergillus niger] Length = 335 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 19/297 (6%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELL 75 + A+AL++ G +V + S+ LAH + DLAFN G G Q L Sbjct: 37 AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + A+ +++ + + VS + L P +KPL Sbjct: 97 AYQIPFTFSDAATMTLCLDKGRTKVSLDEILSMI----RMSRHSETLLSQYPLFVKPLAE 152 Query: 136 GSSL---GIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTE 191 GSS IK +S+ + + +L+E+Y+ G E T G++G Sbjct: 153 GSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLPGREFTVGILGTGEDAWVV 212 Query: 192 IAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + + + A A + CR R D Sbjct: 213 GVDEIYGAAKSRRILTPTDDWAGEADEIKIGWDDQEADLACQTALRAWTVLRCRDGGRID 272 Query: 248 FLFDPLSRKV-FWLEI--NVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D V +EI N G+ P S P +A + S+ EL+ ++++ A R Sbjct: 273 IRMDHSGSPVAHVMEIQINPLAGLLPHWSQLPMIAEHNNVSYNELIEYILKSALQRR 329 >gi|86152116|ref|ZP_01070328.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840901|gb|EAQ58151.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 260.94] Length = 346 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIQQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DDEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis] gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis] Length = 1000 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 136/380 (35%), Gaps = 81/380 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++ GG S+ER +SL+S ++ ++ VS +D Sbjct: 86 VGLICGGPSAERGISLNSARSVLDHIQGEDLHVSCYYIDYELNAYAISPAQVYSNTPADF 145 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 146 DFKLESLARQFSSLSEFAEHLAASVDIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSSE 205 Query: 87 SALSMDKMRSKQVVSSC-GVPVCPSILVNRFTMDSQHLISPP----------YVIKPLKG 135 + DK + +S + V ++ + +S+ V+KP Sbjct: 206 CRQAFDKYYASIELSKRGFITVPNFLVQGKEADESELFKWFASNRLDPTSGTVVVKPAVA 265 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------------IEL 177 GSS+G+ V D++L+E ++DG + Sbjct: 266 GSSIGVTVAYGVADSLKKAKDLILEGIDDKVLVELFLDGGSEFTAIVVDVGSGFECHPVV 325 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + ++Y KY + + P + P+DI K++++ A L Q Sbjct: 326 LLPTEVELQFHGSADIRENDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQ 385 Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280 + R +R D + P S + + +IN+ GM S + A+ Sbjct: 386 RLRLRDFARIDGWYLPSSNSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASK 445 Query: 281 AGYSFRELLLWMVEDASCLR 300 G+S +L ++ A CLR Sbjct: 446 VGFSHSNILRSIIHRA-CLR 464 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 ++ ++ L + G SR D + S +V +E+N PGMTP ++ A Sbjct: 868 NEVLDRCKQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 927 Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 3 VLMGGISSEREVSLSSGKAC---ASALEDAGFKVSQI 36 VL GG +SER+VSL SG A +D V+ Sbjct: 502 VLFGGDTSERQVSLMSGTNVWLKLQAFDDL--DVTPC 536 >gi|15645358|ref|NP_207532.1| D-alanyl-alanine synthetase A [Helicobacter pylori 26695] gi|2829460|sp|P56191|DDL_HELPY RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|2313860|gb|AAD07784.1| D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695] Length = 347 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRANALDLMNFNFPFIIKPNNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELVYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF + +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IKNEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|237753178|ref|ZP_04583658.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC BAA-430] gi|229375445|gb|EEO25536.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC BAA-430] Length = 345 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 109/311 (35%), Gaps = 43/311 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQ-------------------------- 35 +L GG S E E+S+ S A L V Sbjct: 4 CLLFGGKSYEHEISIVSAIALKKLLPKIKHFVFLDSNHNFYLIPKEQMQSKFFSTKSYEK 63 Query: 36 ---IDVDRSVG--LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 I + L KP + N++HG GEDG + ++L+ IPY A Sbjct: 64 TQKIYPKKDGFYTRTLFGEKPLNLPVILNLIHGGDGEDGTLASLLDFYGIPYIGPRNPAC 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 LS DK K +S GV ++ R + + P +IKP + GSSLGI V++ Sbjct: 124 VLSYDKELIKGFAASRGVKCLAHRVLYRNDLVPS-DLEFPIIIKPARLGSSLGIQVVESQ 182 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 +++ L + + ++++IE +++GI+ + + + + + Sbjct: 183 ENLQYALDSAF--EYDEKVIIEPFIEGIKEYNLAGFKGKDGIQFSFIEEPEKSKFLDFEK 240 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEIN 263 +I +++ + + + R DF + EIN Sbjct: 241 KYLDFSRTSNAKEAEISDALKQALQESFTRLYNNAFEGALIRCDFFI--KDNDCYLNEIN 298 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 299 PVPGSLANYLF 309 >gi|289746780|ref|ZP_06506158.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687308|gb|EFD54796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 133 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + V + + FY + KY + +PAK+ + + +++ Sbjct: 1 MCSKCRTAQGEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQ 60 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA A AI CRG++R DF EIN PG T +S++P M +G + LL Sbjct: 61 LAIRAFAAIDCRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWEASGVDYPTLL 118 Query: 290 LWMVEDASCL 299 M+E A Sbjct: 119 ATMIETALAR 128 >gi|49183264|ref|YP_026516.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str. Sterne] gi|65317672|ref|ZP_00390631.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] gi|165871535|ref|ZP_02216181.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0488] gi|167634137|ref|ZP_02392459.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0442] gi|167640293|ref|ZP_02398558.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0193] gi|170687730|ref|ZP_02878945.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0465] gi|170707870|ref|ZP_02898320.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0389] gi|177653413|ref|ZP_02935623.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0174] gi|190567364|ref|ZP_03020278.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis Tsiankovskii-I] gi|227812913|ref|YP_002812922.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229604016|ref|YP_002864872.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] gi|254686587|ref|ZP_05150446.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. CNEVA-9066] gi|254734935|ref|ZP_05192647.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Western North America USA6153] gi|254739720|ref|ZP_05197413.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Kruger B] gi|254754909|ref|ZP_05206944.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Vollum] gi|254756952|ref|ZP_05208980.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Australia 94] gi|49177191|gb|AAT52567.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str. Sterne] gi|164712639|gb|EDR18170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0488] gi|167511695|gb|EDR87076.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0193] gi|167530451|gb|EDR93166.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0442] gi|170127228|gb|EDS96105.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0389] gi|170668257|gb|EDT19005.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0465] gi|172081453|gb|EDT66526.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str. A0174] gi|190561491|gb|EDV15462.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis Tsiankovskii-I] gi|227007521|gb|ACP17264.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684] gi|229268424|gb|ACQ50061.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248] Length = 91 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++R A +A Q++ G++R+DF +V+ E+N PG TP S+FP + Sbjct: 1 MTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT-KDGEVYINEVNTMPGFTPFSMFPLLW 59 Query: 279 AYAGYSFRELLLWMVEDA 296 + G + EL+ ++ A Sbjct: 60 QHTGLPYPELIEELIRLA 77 >gi|283468531|emb|CAP18811.1| putative D-ala D-ala ligase [Opitutus terrae PB90-1] Length = 241 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 6/169 (3%) Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 V+KP GSS+G+ ++ + + L + +IE+ + G EL GV+ ++ Sbjct: 66 VVVKPNAEGSSVGLNLVGSREELTRVLDVIQ----NGRWIIERRIFGRELAVGVLNGRAM 121 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 PKS Y Y KY+ + ++ PA + + +++Q A A A GCR +R D Sbjct: 122 -GVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDYARVD 180 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ +++ LEIN PGM S P A G F L+ MV A Sbjct: 181 FIL-GDDHELYLLEINTHPGMKETSQLPMSARCEGIDFTALVKAMVTLA 228 >gi|215404957|ref|ZP_03417138.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 134 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PAK+ + + +++LA A AI CRG++R DF EIN PG T +S++P Sbjct: 48 PAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLT--DDGPVINEINTMPGFTTISMYP 105 Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299 M +G + LL M+E A Sbjct: 106 RMWEASGVDYPTLLATMIETALAR 129 >gi|148926964|ref|ZP_01810641.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845048|gb|EDK22145.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni CG8486] Length = 346 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + ++ P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDCTMLRKNQNSKE-KLNFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +++ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|302389045|ref|YP_003824866.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302199673|gb|ADL07243.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 324 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 111/305 (36%), Gaps = 34/305 (11%) Query: 17 SSGKACAS-----------ALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAFNVLHGN 61 SG+ A+++AGF I+ + + K DL FN Sbjct: 19 LSGENIYDDAYEEAYQHFSAIKEAGFDAVMIEWKKDNPQETLRKVLEEKVDLVFNAS--- 75 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 ++ + L +G ++ DK K++V+ +P I+V Sbjct: 76 -----SLEEVAFLEAFGIPFAGSGLDLVATDKATRKKIVAYHKLPTPRFIVVEDPNEIPD 130 Query: 122 HLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 H + P +KP++G S GI + ++ + G L+E+++ G E+T Sbjct: 131 HDLKYPLFVKPVRGRGSAGISEENIIERHEDLARVVSKITDKIGQPALVEEFIRGREITV 190 Query: 180 GVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 G++G + S + N PA++ + ++V+ A ++ Sbjct: 191 GIIGYKNPRVLPPVEIEYNSTRTNTFEHKMFDNEIIHCPARLSPEEEEKVKSTALSIYKV 250 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGM------TPVSIFPEMAAYAGYSFRELLLW 291 + + SR D + ++LEIN G+ T MA AG + + + Sbjct: 251 LNAKDFSRIDMIL-GDDGIPYFLEINTFAGLTMSKDGTHHGYMGYMAKTAGMTRADFIGS 309 Query: 292 MVEDA 296 +V A Sbjct: 310 IVRSA 314 >gi|256786060|ref|ZP_05524491.1| D-alanine--D-alanine ligase B [Streptomyces lividans TK24] Length = 364 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 21/313 (6%) Query: 1 MAVLMGGISSE----RE---VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53 +A++ G +S+E V S A A ALE+ G + ++ ++ ++ D+ Sbjct: 32 VALVNGPVSAEDRLYHSKCPVEQRSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDV 90 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 A + LHG +GEDG +Q +L+ L +PY SG+ ASA++ DK+ K+V+ + GVP + Sbjct: 91 ALSNLHGPYGEDGRLQGLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVW 150 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + ++KP GGSS+G+ +++ +P L ++ +LIE+YV Sbjct: 151 SGGPVAWYGRT---IMVKPPFGGSSVGMSLVRDPADLPGALADAAGDGC-APVLIEEYVT 206 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYS---YELKYSSLNSTHVLPAKIPLDIYK----E 226 G +T G++ ++ Y+ ++ + Sbjct: 207 GTPMTVGLLELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDK 266 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A +G RG +R DF+ + + LE+N PGM+ S F AA G + Sbjct: 267 ITAHARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHT 325 Query: 287 ELLLWMVEDA-SC 298 E++L M+ +A +C Sbjct: 326 EVVLAMLHEALAC 338 >gi|308182897|ref|YP_003927024.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4] gi|308065082|gb|ADO06974.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4] Length = 347 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLSPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K G+ +L+N + + P++IKP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDYVLLNERNRANALDLIGFNFPFIIKPNNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+ + + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEKKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFVIE--DEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|317009252|gb|ADU79832.1| D-alanyl-alanine synthetase A [Helicobacter pylori India7] Length = 347 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDCVLLNEKNRANALNLMNFNFPFIVKPNSAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|58698113|ref|ZP_00373036.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535359|gb|EAL59435.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 190 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + FY YE KY+ + H+ PAKIP +IYK A HQ Sbjct: 54 HWSVKRLTQHFPASYKKFHFNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQ 113 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVED 295 +GC+ ISRSDF ++P + + LEIN PG T +S+ PE+A G +F EL+ ++ED Sbjct: 114 FLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIED 173 Query: 296 A 296 + Sbjct: 174 S 174 >gi|289769956|ref|ZP_06529334.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24] gi|289700155|gb|EFD67584.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24] Length = 326 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 14/290 (4%) Query: 17 SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 S A A ALE+ G + ++ ++ ++ D+A + LHG +GEDG +Q +L+ L Sbjct: 17 RSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDVALSNLHGPYGEDGRLQGLLDYLR 75 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 +PY SG+ ASA++ DK+ K+V+ + GVP + + + ++KP GG Sbjct: 76 VPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVWSGGPVAWYGRT---IMVKPPFGG 132 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 SS+G+ +++ +P L ++ +LIE+YV G +T G++ Sbjct: 133 SSVGMSLVRDPADLPGALADAAGDGC-APVLIEEYVTGTPMTVGLLELPGGSAVVFPPLT 191 Query: 197 SDFYS---YELKYSSLNSTHVLPAKIPLDIYK----EVQRLAFLAHQAIGCRGISRSDFL 249 ++ Y+ ++ ++ A +G RG +R DF+ Sbjct: 192 TEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDKITAHARTLWNGLGLRGSARIDFI 251 Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA-SC 298 + + LE+N PGM+ S F AA G + E++L M+ +A +C Sbjct: 252 LTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHTEVVLAMLHEALAC 300 >gi|217033771|ref|ZP_03439197.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10] gi|216943820|gb|EEC23260.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10] Length = 347 Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILMCNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|224368436|ref|YP_002602599.1| DdlB2 [Desulfobacterium autotrophicum HRM2] gi|223691152|gb|ACN14435.1| DdlB2 [Desulfobacterium autotrophicum HRM2] Length = 332 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 17/297 (5%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAI 71 S+ + +A + L+ G + +I + L + DL FN+ G G + + AI Sbjct: 28 SVETIEAIETTLQGLGHETRRIGNAIRLTERLVQGERWDLVFNIAEGLHGIGREAQIPAI 87 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 L+L IPYT S + A+++ K +K ++ G+ + N PP+ +K Sbjct: 88 LDLYNIPYTFSDPMVMAVTLHKGMTKHIIRDAGLATADFKVANSARDAWNLPFDPPFFVK 147 Query: 132 PLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GV 181 P+ G+ +GI ++K +P + Q +LIE+++ G E T Sbjct: 148 PVAEGTGMGITAKSLVKNALDLPG-VCQELVEQFHQPVLIEEFLTGREFTVGIVGTGTRA 206 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240 ++++ I+ K + YS+E K + LP D + + V+ LA A + +GC Sbjct: 207 QVMGTMEIIVISSKKDEVYSFENKEGWKSKVQYLPLSPGTDPLIQAVEDLALSAWKVLGC 266 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296 R R D D + ++E+N G+ P S P + + G S+ +L+ ++E A Sbjct: 267 RDGGRIDIRCDAA-GRPSFIEVNPLAGLRPEYSDLPIVCQFFGTSYVQLIELILESA 322 >gi|258593040|emb|CBE69351.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) [NC10 bacterium 'Dutch sediment'] Length = 436 Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+AF V+HG GEDG +Q + EL +PY +G+ ASA+ MDK+ SK V G+PV Sbjct: 147 IDVAFPVIHGTHGEDGTIQGLCELANLPYVGAGVAASAVGMDKIISKLVFQGAGLPVVEG 206 Query: 111 ILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 I V R + ++S P V+KP GSS+GI V ++ ++ Sbjct: 207 IGVTRRELLEDEAAVVQALERILSYPVVVKPAVAGSSVGIGVAHDAVEALSLAKRAMRFS 266 Query: 162 H--------GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 ++ ++ V G + + E+ + + + S+ + Sbjct: 267 CRVLVERAVQQRIEVQCGVIGNHALTVSECEELISSGEVVGYRDKYPENKKPGSADLAPS 326 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 ++PA+IP + E++ +A A ++I RGISR DFL D + K + EIN PG S+ Sbjct: 327 IIPARIPQALSDEIRSIAAAAFKSIDSRGISRVDFLVDSAAMKPYVNEINTMPG----SL 382 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 + +G EL++ +VE A Sbjct: 383 SLTLWERSGVKPAELIVRLVELA 405 Score = 44.9 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLVLAHLKPDL 53 + ++ G S EREVS+ + L F+ I + + DL Sbjct: 8 IGLIFGSRSVEREVSIMTAGKVYEVLLSLQDRFETLPIFLTAEGTWLTGEAVRDL 62 >gi|167947938|ref|ZP_02535012.1| D-alanine--D-alanine ligase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 128 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 49/100 (49%), Positives = 60/100 (60%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVLMGG S+EREVSL SG A AL +D ++ L+ D AF VLHG Sbjct: 12 VAVLMGGCSAEREVSLRSGDAVFQALLRQAIDAHAVDSAENLLEQLSEGGFDRAFIVLHG 71 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 GEDG VQ LE + +PYT SG+L SAL MDK R+K + Sbjct: 72 RGGEDGTVQGALESIGLPYTGSGVLGSALGMDKYRTKALW 111 >gi|283957219|ref|ZP_06374681.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] gi|283791291|gb|EFC30098.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni 1336] Length = 346 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 A+L GG S E E+S+ S + + + D +R + Sbjct: 4 AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62 Query: 46 -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L+ + N++HG GEDG + A+ E I + + A Sbjct: 63 KEKELFVKQGGFFSKGFLKENKLECECMINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K +K S GV ++ + + +S P +IKP + GSS+GI ++K Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181 Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + +++ + + C + + + E K + Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 S ++ A + ++ ++++ + + + R DF +V+ EIN Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 NPGSLANYLF 309 >gi|317014150|gb|ADU81586.1| D-alanyl-alanine synthetase A [Helicobacter pylori Gambia94/24] Length = 347 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 114/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEELNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + + A Sbjct: 64 KLPPLTLTRNGLLKNSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group] Length = 946 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 73/381 (19%), Positives = 138/381 (36%), Gaps = 82/381 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++ GG S ER +SL+S ++ ++ V+ +D Sbjct: 75 VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE +P+ + Sbjct: 135 DFKLESLAQGFQSLFDFAQHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194 Query: 87 SALSMDKMRSKQVVSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIKPLKG 135 L+ DK + +++ G P S L F + + V+KP Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178 GSS+G++V S D+++IE +++G + Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + I + + ++Y KY + + P + P ++ +++ + + Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374 Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279 +G R +R D FL P++ V + +IN+ GM S + ++ Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G+S +L +V+ A C R Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++ + +G G SR D + + ++ +E+N PGMTP ++ A Sbjct: 862 MSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQA 921 Score = 42.2 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK 32 V+ GG +SER+VSL SG L+ GF Sbjct: 492 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 519 >gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group] gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group] gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group] gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group] gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group] Length = 946 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 73/381 (19%), Positives = 138/381 (36%), Gaps = 82/381 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42 + ++ GG S ER +SL+S ++ ++ V+ +D Sbjct: 75 VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE +P+ + Sbjct: 135 DFKLESLAQGFQSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194 Query: 87 SALSMDKMRSKQVVSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIKPLKG 135 L+ DK + +++ G P S L F + + V+KP Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178 GSS+G++V S D+++IE +++G + Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + I + + ++Y KY + + P + P ++ +++ + + Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374 Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279 +G R +R D FL P++ V + +IN+ GM S + ++ Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G+S +L +V+ A C R Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + ++ + +G G SR D + + ++ +E+N PGMTP ++ A Sbjct: 862 MSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQA 921 Score = 42.2 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK 32 V+ GG +SER+VSL SG L+ GF Sbjct: 492 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 519 >gi|307718300|ref|YP_003873832.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila DSM 6192] gi|306532025|gb|ADN01559.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila DSM 6192] Length = 646 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 26/298 (8%) Query: 24 SALED-AGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILELLE 76 +AL++ G+ + + ++ L LK D FN+ F D V A+LE+L Sbjct: 343 AALKECTGYSFTYLSRHETLIQDLMRLKGKIDYVFNLCDEGFFNDPRKELHVPALLEMLG 402 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPYT + A DK + V GVPV + ++ ++ + P ++KP G Sbjct: 403 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 462 Query: 137 SSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 SS GI S+ ++ + +L+E+++ G +LT G++G+ D + Sbjct: 463 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPPDDYMVL 522 Query: 193 AVPKSDF----------YSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAI 238 + + D+ YE K+ + +PA +P K + + + Sbjct: 523 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALQSIPAGLPEATEKSIVEWCVRLFERL 582 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR +R D+ D + LE+N PG +MA AG + ++L +++ A Sbjct: 583 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPQMLQAILKAA 639 >gi|308184522|ref|YP_003928655.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180] gi|308060442|gb|ADO02338.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180] Length = 347 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 115/315 (36%), Gaps = 47/315 (14%) Query: 2 AVLMGGISSEREVSLSSG---KACAS-------ALEDAGFKVSQID---VDRSVGLVLAH 48 VL GG S E E+S+ S K L++ I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDEN-HHFYLIEESNMHSKYFAQIKE 62 Query: 49 LKPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 K L N++HG GEDG + ++LE I + I Sbjct: 63 KKLPPLMLTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGII 142 AS LS +K +K GV IL+N + + P+++KP GSSLG+ Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYILLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFY 200 V+K+++ + L + + ++LIE ++ G++ G + I P + Sbjct: 183 VVKEEKELNYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEF 240 Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + S P + K+++ + + I R DF +V+ Sbjct: 241 LDFKQKYLDFSRTKAPKANLSNALEKQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYL 298 Query: 260 LEINVQPGMTPVSIF 274 EIN PG +F Sbjct: 299 NEINPIPGSLANYLF 313 >gi|255322239|ref|ZP_05363385.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277] gi|255300612|gb|EET79883.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277] Length = 344 Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 45/311 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDA-------GF-KVSQI---DVDRSV-------- 42 AV+ G S E E+S+ S A L++ F + I D+ + Sbjct: 4 AVIFGAKSYEHEISIVSAIALKKVLKNEPLFIFCDKFREFYLINGADMKANFFSSGKYKN 63 Query: 43 ---------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L ++ D+ N++HG GEDG + A+LE + Y + AS Sbjct: 64 AKKLTLKQGGFFAGGLLGEKKIEADVFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEAS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 ALS +K +K + GV +V+R + P ++KPL+ GSS+G+ VIK Sbjct: 124 ALSYNKELTKLLAQKAGVKTLNYEVVSREK---APSLPLPVILKPLRLGSSIGVSVIKDA 180 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + L + ++L+E +++G++ A ++ + + + Sbjct: 181 GELEYGLDVAY--EFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQ 238 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG----ISRSDFLFDPLSRKVFWLEIN 263 S +I E+ + + I G + R DF ++ +V+ EIN Sbjct: 239 KYMSFSNESRAREANISAELAAKLKQSFERIYDCGFNGALIRCDFF--EVNGEVYLNEIN 296 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 297 PNPGSMANYLF 307 >gi|317180500|dbj|BAJ58286.1| D-alanyl-alanine synthetase A [Helicobacter pylori F32] Length = 347 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D ++ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKETLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 64 KLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS K +K G+ +LVN + + P++IKP GSSLG+ V Sbjct: 124 SVLSYSKYLTKLYAKDLGIKTLDCVLVNEKNRANALDLIGFNLPFIIKPSNAGSSLGVSV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + + ++++ + + + R DF +V+ Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|307637426|gb|ADN79876.1| D-alanine--D-alanine ligase [Helicobacter pylori 908] gi|325996016|gb|ADZ51421.1| D-alanine--D-alanine ligase [Helicobacter pylori 2018] gi|325997611|gb|ADZ49819.1| D-alanine--D-alanine ligase [Helicobacter pylori 2017] Length = 356 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 114/315 (36%), Gaps = 47/315 (14%) Query: 2 AVLMGGISSEREVSLSSG---KACAS-------ALEDAGFKVSQID---VDRSVGLVLAH 48 VL GG S E E+S+ S K L++ I+ + + Sbjct: 13 CVLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDEN-HHFYLIEESNMHSKYFAQIKE 71 Query: 49 LKPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 K L N++HG GEDG + ++LE I + I Sbjct: 72 KKLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGII 142 AS LS +K +K G+ L+N + + P+++KP GSSLG+ Sbjct: 132 ASVLSYNKYLTKLYAKDLGIKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 191 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFY 200 V+K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 192 VVKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEF 249 Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + S P + ++++ + + I R DF +V+ Sbjct: 250 LDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYL 307 Query: 260 LEINVQPGMTPVSIF 274 EIN PG +F Sbjct: 308 NEINPIPGSLANYLF 322 >gi|15611742|ref|NP_223393.1| D-alanyl-alanine synthetase A [Helicobacter pylori J99] gi|6919861|sp|Q9ZLA5|DDL_HELPJ RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|4155237|gb|AAD06259.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99] Length = 347 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 4 CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKEK 63 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + + A Sbjct: 64 KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV +L+N + + P+++KP GSSLG+ V Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKGFCFSYVEEPNKQEFL 241 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S P + ++++ + + I R DF +V+ Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 EINPIPGSLANYLF 313 >gi|298378694|ref|ZP_06988578.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302] gi|298281028|gb|EFI22529.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302] Length = 96 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 56/91 (61%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSM 91 GEDG +Q +LEL+ +PYT SG++ASALSM Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 >gi|254779285|ref|YP_003057390.1| D-alanyl-alanine synthetase A [Helicobacter pylori B38] gi|254001196|emb|CAX29162.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) [Helicobacter pylori B38] Length = 349 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 45/314 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49 VL GG S E E+S+ S A L+D I+ + + Sbjct: 6 CVLFGGASFEHEISVVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 65 Query: 50 KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 K L N++HG GEDG + ++LE I + I A Sbjct: 66 KLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 125 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143 S LS +K +K GV L+N + + P+++KP GSSLG+ V Sbjct: 126 SVLSYNKYLTKLYAKDLGVKTLDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVSV 185 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201 +K+++ + L + + ++LIE ++ G++ G + + P + Sbjct: 186 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 243 Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + S + P + ++++ + + I R DF +V+ Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 301 Query: 261 EINVQPGMTPVSIF 274 EIN PG +F Sbjct: 302 EINPIPGSLANYLF 315 >gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1] Length = 341 Score = 88.8 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 40/285 (14%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45 +L GG S+EREVS+ S ++ A+ F V + ++ + Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85 Query: 46 ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ++P + F VLHG GEDG +Q LE+L +PY + IL+S+++MD Sbjct: 86 NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145 Query: 93 KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 K+ +K+V+ S G+ P + ++ + + ++ P +KP GSS+GI + Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204 + L + + ++L+EQ V+ E+ G D + V FY Y+ Sbjct: 206 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 263 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 KY T +PAKI I ++ A A +AIG G+SR DF Sbjct: 264 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFF 308 >gi|20806600|ref|NP_621771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Thermoanaerobacter tengcongensis MB4] gi|20515044|gb|AAM23375.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Thermoanaerobacter tengcongensis MB4] Length = 332 Score = 88.8 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 111/292 (38%), Gaps = 27/292 (9%) Query: 23 ASALEDAGFKVSQIDVDRSVGL---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79 AL++AGF I+ V+ + D+ FN LEL IPY Sbjct: 36 YEALKEAGFDAVLIEWKDDPIKTYEVIQKEEVDIIFNA------SSLKEIEFLELFNIPY 89 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSS 138 SGI + + DK K +V++ G+P ++ + P +KP+ G S Sbjct: 90 VGSGIDLA--ATDKRMRKDIVAAHGLPTPKYVVAYSANEIPSVDHLRFPLFVKPIMGRGS 147 Query: 139 LGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAV 194 GI ++ + G LIE++++G E+T G++G + V Sbjct: 148 AGIDEENIVYDKSRLPKVVSKITEKIGQPALIEEFIEGREVTVGIIGYRNPIVLPLLEIG 207 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + + N P ++P +I K ++ A + + R +R D + Sbjct: 208 YNNVKTNTYEHKMFDNEIIKCPMEVPEEIEKRIKDTALRIFKVLNARDYARIDMIL-GKD 266 Query: 255 RKVFWLEINVQPGMTP----------VSIFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T MA AG + +E + ++E A Sbjct: 267 NVPYFLELNTYAGLTTAVERGEKHVHHGYMGYMAKAAGMTRKEFIGKILESA 318 >gi|315185431|gb|EFU19202.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578] Length = 648 Score = 88.8 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 126/298 (42%), Gaps = 26/298 (8%) Query: 24 SALED-AGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILELLE 76 +AL++ G+ + + ++ L LK D FN+ F D V A+LE+L Sbjct: 344 AALKECTGYSFTYLSRHETLIQDLMRLKGKVDYVFNLCDEGFFNDPRKELHVPALLEMLG 403 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPYT + A DK + V GVPV + ++ ++ + P ++KP G Sbjct: 404 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 463 Query: 137 SSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 SS GI S+ ++ + +L+E+++ G +LT G++G+ + D + Sbjct: 464 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPTDDYMVL 523 Query: 193 AVPKSDF----------YSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAI 238 + + D+ YE K+ + +PA +P + K + + + Sbjct: 524 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALRSIPAGLPEETEKSIVEWCVRLFERL 583 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 CR +R D+ D + LE+N PG +MA AG + +L +++ A Sbjct: 584 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPRMLEAILKAA 640 >gi|224419173|ref|ZP_03657179.1| D-alanyl-alanine synthetase A [Helicobacter canadensis MIT 98-5491] gi|253828106|ref|ZP_04870991.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491] gi|313142679|ref|ZP_07804872.1| ligase [Helicobacter canadensis MIT 98-5491] gi|253511512|gb|EES90171.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491] gi|313131710|gb|EFR49327.1| ligase [Helicobacter canadensis MIT 98-5491] Length = 345 Score = 88.8 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 61/309 (19%), Positives = 112/309 (36%), Gaps = 43/309 (13%) Query: 4 LMGGISSEREVSLSSGKACASAL-----------------------------EDAGFKVS 34 L GG S E E+S+ S A L A K + Sbjct: 6 LFGGSSYEHEISIVSAIALKKLLGNVEYFIFLDDTHTFYLIPKDKMQSKFFSTKAYLKAT 65 Query: 35 QIDVDRSV-----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +I L + N++HG GEDG V ++L+ I Y A L Sbjct: 66 RIYPKNGGFYQKTLWGEKKLPLPIVVNLIHGADGEDGRVASLLDFYGINYIGPRNPACVL 125 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 S DK +K + CGV +V++ ++ + + P ++KP + GSS+GI V+ +++ Sbjct: 126 SFDKELTKMLAKECGVLSLDYQMVHKDSIP-KVTLPFPLIVKPARLGSSIGISVVYEEKE 184 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ + D+ +IE +V GI+ + + + + + Sbjct: 185 LEYAIQEAF--EYDDKAIIEPFVSGIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEKKY 242 Query: 210 NSTHVLPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +I + +Q + + + R DF + + EIN Sbjct: 243 LDFSRTESAKEAEISESLKQTLQENFTKIYGNLFDGALIRCDFFV--KENQCYLNEINPI 300 Query: 266 PGMTPVSIF 274 PG +F Sbjct: 301 PGSLANYLF 309 >gi|20093140|ref|NP_619215.1| hypothetical protein MA4352 [Methanosarcina acetivorans C2A] gi|19918479|gb|AAM07695.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 703 Score = 88.8 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 120/304 (39%), Gaps = 24/304 (7%) Query: 16 LSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFGEDG----LV 68 L + AL + + K + +D ++ L K DL N+ F D V Sbjct: 336 LETVNRMKQALSEIPYMKFTFLDRHETLLEDLKKRAGKTDLVLNLCDEGFNNDPIKELHV 395 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 A+LE IPYT +G + DK + +PV +LV + S +S P Sbjct: 396 PALLEQFNIPYTGAGPQCLSFCYDKSLVRGAAREMRIPVAKGVLVTGDSDVSSFSLSFPL 455 Query: 129 VIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGD 184 ++KP G SS ++ + I + ++ L+E+++ G +++ G++G+ Sbjct: 456 LVKPNSGDSSYGITQKSIVHSREEIFDIMKETREKIGADKPFLLEEFLPGKDISVGIIGN 515 Query: 185 ASLDVTEIAVPKSDF---------YSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAF 232 + YE K+ + + PA +P KE+ R Sbjct: 516 PPFCTVLPITEEDYSAVPEDLPRICGYEAKWLPDSPYWKIKSVPAGLPEKTEKEIVRCCL 575 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +GCR +R D+ D + LE+N PG +MAAYA S+ +L + Sbjct: 576 ALFTRLGCRDYARFDWRLDAE-GRPKLLEVNPNPGWCWDGHLAKMAAYANISYSGMLAAI 634 Query: 293 VEDA 296 +E A Sbjct: 635 LEAA 638 >gi|300765781|ref|ZP_07075756.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017] gi|300513475|gb|EFK40547.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017] Length = 310 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 123/304 (40%), Gaps = 55/304 (18%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190 KP GSS+GI + + + ++ ++ + IE+ V Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246 Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 +P+ + FY Y+ KY N+ ++P ++ +I ++++ A A + G+ R+D Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306 Query: 248 FLFD 251 F Sbjct: 307 FFLT 310 >gi|193214834|ref|YP_001996033.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088311|gb|ACF13586.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110] Length = 656 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 116/300 (38%), Gaps = 25/300 (8%) Query: 21 ACASALED-AGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDG----LVQAILE 73 +AL +K++ ++ ++ LA +KP D FN+ F D + ++LE Sbjct: 336 QLKNALRQIDRYKITYLNNHNTLIHDLARIKPKVDFVFNLCDEGFNNDPRKELHIPSLLE 395 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 ++ YT SG A DK + + G+ V + + + + P + KP Sbjct: 396 IMGFRYTGSGPQCLAYCYDKSLVRGIAKEMGIAVPEAFFIRPEETSFELPFNFPVIAKPN 455 Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGI----------ELTC 179 G SS V + + + + + +L+E+++ G + Sbjct: 456 FGDSSFGITTRSVSYTIEELVNAISEIRSKIGYEKPILVEEFLTGKDLSLGIIGNAPESY 515 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQ 236 V+ D + + YE K+ + +PA+I + K ++ + + Sbjct: 516 MVLPIIEEDYSGLPESLPKICGYEAKWLPDSPYATVKSIPAQISEETKKLLEEWCVMLFE 575 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + CR R D+ D + LE+N PG +M+A++ + +++ ++ +A Sbjct: 576 RLECRDYCRFDWRLDA-NGNPKLLEVNPNPGWCWDGHLAKMSAFSEIDYPKMIETILAEA 634 >gi|32477963|ref|NP_870957.1| D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1] gi|32448520|emb|CAD78035.1| probable D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1] gi|327539377|gb|EGF25995.1| D-alanine-D-alanine ligase [Rhodopirellula baltica WH47] Length = 341 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 107/297 (36%), Gaps = 25/297 (8%) Query: 22 CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75 L G +V + + + + L + +P++ + +L G D V + LEL+ Sbjct: 37 VCETLRGLGHEVLPLGIFDDLAPIRAALQNFQPNITYMLLEEFYGVVTYDFAVISYLELM 96 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVIKPLK 134 + PY+ LS DK SK+++ + + + + P +K Sbjct: 97 QQPYSGCNPRGLMLSKDKALSKKLLMYHRIATPRFAVFPNGRAVRRPKKLEFPLFVKSTI 156 Query: 135 GGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDA 185 +S ++ D+++ + GD +++EQY++G EL GVM Sbjct: 157 EDASFGIAQASIVHNDEALAERVTFLHEKTGGD-VIVEQYIEGRELYVGVMGNTRLVTFP 215 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-------IYKEVQRLAFLAHQAI 238 + ++ +P + K + +L ++A+ Sbjct: 216 AWEMDFGKMPDESARIATSRVKWDRKYQEKHDITCHAAEGLTEVQQKHIAKLCKRVYRAL 275 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G +R D + +V+ +E N P + F E A AG + L+ ++ Sbjct: 276 HMSGYARMDLRMTA-TGEVYVIEANANPNIEYGEDFAESAEAAGIPYESLIQRILNL 331 >gi|223040206|ref|ZP_03610485.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus RM3267] gi|222878567|gb|EEF13669.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus RM3267] Length = 344 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 120/311 (38%), Gaps = 45/311 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDA-------GF-KVSQI---DVDRSV-------- 42 AV+ G S E E+S+ S A L++ F + I D+ + Sbjct: 4 AVIFGAKSYEHEISVVSAIALKKVLKNEPLFIFCDKFREFYLINGADMKANFFSSGKYKN 63 Query: 43 ---------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 L ++ D N++HG GEDG + A+LE + Y + AS Sbjct: 64 AKKLTLKQGGFFAGGLLGEKKIEADAFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEAS 123 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 ALS +K +K + GV +V+R + P ++KPL+ GSS+G+ VIK Sbjct: 124 ALSYNKELTKLLAQKAGVNTLNYEVVSRAK---APSLPLPVILKPLRLGSSIGVSVIKDA 180 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 + L + ++L+E +++G++ A ++ + + + Sbjct: 181 SELEYGLDVAY--EFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQ 238 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG----ISRSDFLFDPLSRKVFWLEIN 263 S DI E+ + + I G + R DF ++ +V+ EIN Sbjct: 239 KYMSFSNESRAREADIGAELAAKLKQSFERIYNCGFDGALIRCDFF--EVNGEVYLNEIN 296 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 297 PNPGSMANYLF 307 >gi|238497161|ref|XP_002379816.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357] gi|317146742|ref|XP_001821628.2| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40] gi|220694696|gb|EED51040.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357] Length = 360 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 32/307 (10%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHG--NFGEDGLVQAILEL 74 ASALE G +V + +++ L+ H + DL FN G + V A+LE Sbjct: 41 NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYV 129 +IP+T S A +DK ++K ++ +P P ++V R + + P Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160 Query: 130 IKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 KP+ +S GI + K + + + + ++L+E+++DG E T V+G Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220 Query: 187 LDVTEIAVPKSDFYSY----------------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + + + + + A + KE+ + Sbjct: 221 RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAEI 280 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 A+QA+GC+ R D D +E+N G+ P S+F +A G +++++ Sbjct: 281 GLSAYQALGCKDGGRVDIRMDGA--VPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDII 338 Query: 290 LWMVEDA 296 +V++A Sbjct: 339 AEIVDNA 345 >gi|83769491|dbj|BAE59626.1| unnamed protein product [Aspergillus oryzae] Length = 359 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 32/307 (10%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHG--NFGEDGLVQAILEL 74 ASALE G +V + +++ L+ H + DL FN G + V A+LE Sbjct: 41 NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYV 129 +IP+T S A +DK ++K ++ +P P ++V R + + P Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160 Query: 130 IKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186 KP+ +S GI + K + + + + ++L+E+++DG E T V+G Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220 Query: 187 LDVTEIAVPKSDFYSY----------------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + + + + + A + KE+ + Sbjct: 221 RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAEI 280 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 A+QA+GC+ R D D +E+N G+ P S+F +A G +++++ Sbjct: 281 GLSAYQALGCKDGGRVDIRMDGA--VPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDII 338 Query: 290 LWMVEDA 296 +V++A Sbjct: 339 AEIVDNA 345 >gi|213854615|ref|ZP_03382855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806172|ref|ZP_06536801.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 69 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D +V EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 2 GMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 55 >gi|27382562|ref|NP_774091.1| hypothetical protein blr7451 [Bradyrhizobium japonicum USDA 110] gi|27355734|dbj|BAC52716.1| blr7451 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 106/295 (35%), Gaps = 24/295 (8%) Query: 22 CASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVL---HGNFGEDGLVQAILELL 75 S L AG +V + D + V + KP + F +L H N D + + LEL+ Sbjct: 41 VVSTLRAAGHEVRALGAQDEIKPVREAIEEFKPHVVFTLLEEFHNNVAYDQHIASYLELM 100 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLK 134 ++PYT L+ K SK +V + + R + ++ P ++K L Sbjct: 101 KVPYTGCNPRGLILARGKDLSKTLVHHRRIAAPAFAVFPMRRKVKRPTRLALPLIVKSLN 160 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 S GI + + + EQ+++G EL GV+G+ L V I Sbjct: 161 MDGSFGISQASIVDTDEKLAERVAFIHERVESAAIAEQFIEGRELYVGVLGNNRLRVLPI 220 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIP--------------LDIYKEVQRLAFLAHQAI 238 K ++ +QR A ++A+ Sbjct: 221 WELKFGSMGGRRSRHIATEKAKHDTDYQEKVGIVDGPAKDLAPEVTARIQRAAKRIYRAL 280 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G G +R DF +++E N P + F A +AG + +LL ++ Sbjct: 281 GLDGYARIDFRL-AADGTPYFIEANPNPEIAKSQEFATAAQHAGLKYPDLLQRIL 334 >gi|317154408|ref|YP_004122456.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944659|gb|ADU63710.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2] Length = 334 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 12/292 (4%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAILELLE 76 L G V +I ++ LA + D+ FN+ G G + V A+L+ Sbjct: 33 AGIERVLTGLGHAVDRIGNISALVARLAAGDRWDMVFNIAEGLHGLGREAQVPALLDAWS 92 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPY+ SG AL++ K + VV S GV +V R + P +KP+ G Sbjct: 93 IPYSFSGPELMALTLHKGWTNAVVRSLGVATADFAVVTRIEDVDSMSLPFPLFVKPVAEG 152 Query: 137 SSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 +S GI + ++ L+E Y+ G E T G++G + Sbjct: 153 TSKGITERSLVRDPAALREVCADLLTTFRQPALVETYLPGREFTVGLLGSGDESRVAGVI 212 Query: 195 PKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249 D +Y + + V + ++ LA A + +GC R D Sbjct: 213 EVRAVGKGDATAYTYENKQDWTRRVAYELVDDEVAMAAASLALKAWRGLGCLDAGRIDVR 272 Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 ++E+N PG+ P S P + G S+ L+ + A+ + Sbjct: 273 L-GADGAPRFIEVNPLPGLNPESSDLPILWRLGGKSYDALIREIFHSAARRK 323 >gi|115379297|ref|ZP_01466409.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca DW4/3-1] gi|310821036|ref|YP_003953394.1| d-ala d-ala ligase family [Stigmatella aurantiaca DW4/3-1] gi|115363707|gb|EAU62830.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca DW4/3-1] gi|309394108|gb|ADO71567.1| D-ala D-ala ligase family [Stigmatella aurantiaca DW4/3-1] Length = 344 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 119/296 (40%), Gaps = 21/296 (7%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLH---GNFGEDGLVQAILEL 74 +L G + S I V V +L ++ DL FN+ ++ + V A++E+ Sbjct: 26 QVGESLRKLGHQPSFIAVSDRVFDILQEIERSGCDLVFNLCETFAEDYRLEVNVAALMEM 85 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 + +T SG L+ DK+ +KQ++ +P + T+++ ++ P ++KP + Sbjct: 86 ARVKFTGSGTAGLLLAQDKILTKQLLEYHEIPTPDFATFDGSTVETNGDLAFPLIVKPAR 145 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 +S+GI D ++ D+ L E+++ G E+ G++G L Sbjct: 146 SDASIGIGGKSLVNSWEQLTDRVREIRKELRDEALAEEFIQGREVYVGIIGTKELPEILP 205 Query: 193 AVPKSD-FYSYELKYSSLNSTHVLP-----------AKIPLDIYKEVQRLAFLAHQAIGC 240 V + + S P I + + V+R A LA++A+ Sbjct: 206 IVELDFGNWDKDKPTISDREVKFGPETEGSPKLVIARDISPVLRQRVERAALLAYRALKL 265 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + +R D + LE+N P + A G S+ +L+ +++ A Sbjct: 266 QDYARIDLRISEQDD-PYILEVNPNPYLEDKGELALAAREKGLSYTQLIGRILDSA 320 >gi|302341652|ref|YP_003806181.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii DSM 2075] gi|301638265|gb|ADK83587.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii DSM 2075] Length = 340 Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 95/305 (31%), Gaps = 24/305 (7%) Query: 19 GKACASALEDAGFKV--SQIDVD-RSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAIL 72 +AL G + + L L+PD+ FN++ G L +L Sbjct: 25 ASQVLAALGRLGHRAQGLAFGPEVDQTRQALEELRPDVVFNLVETPLGMARMIHLAPLLL 84 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VI 130 E L + YT +G L+ K+ +K+ + +P + L V Sbjct: 85 ERLRLRYTGAGARGMLLTSQKLLAKKAMRESNLPTPDWCGPRDDGLPFSPLRRYIVKSVW 144 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----------- 179 + G I+ ++ + G E Y+DG E Sbjct: 145 EHGSVGLDDHSIIKPLGRAAMRAAIAQRGKALGGDCFAEAYIDGREFNIAILAGSRGPEV 204 Query: 180 ----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + V + + + ++ ++ ++ Sbjct: 205 LPPAEITFEGFQPGKPHIVGYRAKWVEDSHEYNHTPRRFDFEPRDAELLARLKAMSLRCW 264 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + G RG +R DF D + F LE+N P + + F A AG ++ ++ Sbjct: 265 RLFGLRGWARVDFRVDRK-GRPFILEVNANPCLADDAGFMAAARRAGLDQTIVVWRILGS 323 Query: 296 ASCLR 300 AS R Sbjct: 324 ASRGR 328 >gi|325972390|ref|YP_004248581.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] gi|324027628|gb|ADY14387.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] Length = 314 Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 103/289 (35%), Gaps = 18/289 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFGED--GLVQAIL 72 KA AL G V S+ L+L + DL FN++ LV + Sbjct: 26 KAVKKALLRLGHSVEV--AAFSLNLILTARRIEKSGCDLVFNLVENLSSSRLLHLVPLVC 83 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVI 130 + L +PY+ +++ DK+ +K+ + G+P P L+ P Sbjct: 84 QTLSVPYSGGSAYTLSVTGDKLVAKRQLGLAGLPTPPWFEDVAECSDFLQVPLMLKPVAQ 143 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIEL-TCGVMGD 184 + G + + + L L + + G + + G L C + Sbjct: 144 EASVGITDASVRTFSDKAQLSLALSEHPDLFAERYIDGREFNLSILPSGRVLPVCEMRFV 203 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 V + E + A + +E++RLA + G G + Sbjct: 204 DYPKDKVKIVGYEAKWQQESFAYQHTQRSYVFAPEQRVLVEELKRLAKEVYTLFGSSGYA 263 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R DF D + F LE+N P +T S F A+ AG S+ E++ ++ Sbjct: 264 RVDFRVDEQ-NRPFILEMNSNPCITADSGFIAAASEAGMSYTEVIEQLL 311 >gi|326391834|ref|ZP_08213349.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992119|gb|EGD50596.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200] Length = 325 Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 106/290 (36%), Gaps = 27/290 (9%) Query: 25 ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A+++AGF I+ + K DL FN ++ + L + Sbjct: 38 AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140 G ++ DK K +V+S G+P ++ + P KP+ G S G Sbjct: 90 VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPLFAKPISGRGSAG 149 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196 I ++ + G LIE++++G E+T G++G V Sbjct: 150 IDEENIIYDKDKLPQVVSKITDKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + N P ++ ++ ++++ A ++ + + +R D + Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268 Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T S MA AG + E + ++E A Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIRKIIESA 318 >gi|300088095|ref|YP_003758617.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527828|gb|ADJ26296.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 336 Score = 86.5 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 20/297 (6%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN---FGEDGLVQAILELLEIP 78 +A+ AG ++ R + D FN+ G + + A+LE+L IP Sbjct: 36 IEAAVSGAGHTPIRLGGGREFLRQVLDNPVDFVFNIAEGRGTGRAREAQIPAVLEMLGIP 95 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135 Y+ + ++++DK +K++ GV +++N + P IKP Sbjct: 96 YSGADPQTLSMALDKPLTKRLADFAGVSTPAWLVLNDTANLAVADWASLHFPVFIKPAFE 155 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GSS GI + S + +L+E+++DG E+TCG++G+ + Sbjct: 156 GSSKGIRLNSLAASPAAAAAVAGRLLGDYRQPVLVEEFIDGDEITCGLIGNTGQADNPMV 215 Query: 194 VPKSDFYSYELKYSSL----------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 +P + PA++P + +E+ R A + CR Sbjct: 216 LPLGILPHRADGPFIYSLEVKRDYRNRVEYQFPARLPAPVLEELTRQAVRVFDTLNCRDF 275 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +R+DF D + ++LEIN PG++ S +A G+S EL+ ++ DA+ R Sbjct: 276 ARADFRIDRR-GRPWFLEINPLPGLSLDSDLYIIARGLGWSHAELIQAVL-DAALNR 330 >gi|327334538|gb|EGE76249.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1] Length = 178 Score = 86.5 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + VL GG+S +R++SL SG+ A AL G +V + D+D ++ L + F +LHG Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116 GE+G + +L+L+ IPY S +S DK + + V++ G+ + + Sbjct: 65 GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVATAGIVTPQQVALPHDVFRE 124 Query: 117 ------TMDSQHLISPPYVIKPLKGG 136 P ++KP +G Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGA 150 >gi|158521902|ref|YP_001529772.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3] gi|158510728|gb|ABW67695.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3] Length = 527 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 98/307 (31%), Gaps = 33/307 (10%) Query: 20 KACASALEDAGFKVSQI--DVD-RSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILE 73 +A + AL D G++ + D+D ++ L L PDL FN+ L+G L +LE Sbjct: 38 EAVSGALSDLGYEPVPLACDLDLEALRRDLVSLCPDLVFNLVESLNGQGRLIHLAPILLE 97 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQH 122 + IPYT S + +K +K +S GV I VN Sbjct: 98 AMGIPYTGSSAYVIYRTSNKTAAKDHMSQWGVATPSWIGPASLLRIQRTRVNPAERLPNQ 157 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 V + G +V L+ L+ S G E Y+ G E ++ Sbjct: 158 SWIIKSVWEHASFGLDENAVVCPDTLGDILNTLKQRSPALGGDCFAEHYIPGREFNVALI 217 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF---------- 232 +A K + + + Sbjct: 218 EEAGKPRVLPVAEIRFENYEGEKPAIVCYRAKWEPGSFECLNTVRSFEFPDSDGPLLEGV 277 Query: 233 -----LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 +G +R DF D + LE+N P ++P + F AG S+ + Sbjct: 278 TSIARHCWDLFHLKGYARVDFRVDDCGN-PWVLEVNANPCLSPDAGFAAAMEQAGISYVQ 336 Query: 288 LLLWMVE 294 + +V Sbjct: 337 AIDAIVR 343 >gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2] gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1] gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3] gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium sp. P08] Length = 255 Score = 86.1 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 16/252 (6%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 +LHG GE+G + +L+L+ IPY SG A +S DK + +++++ GV + + Sbjct: 1 MLHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDKSIASRIMTAVGVATPQQVALPHD 60 Query: 117 T----------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 P ++KP +GGSSLG+ + ++P + + + D + Sbjct: 61 IFRELGTRPVIHSITKKFGLPIIVKPARGGSSLGVTRVDDIDALPQAIANAY--AYDDMV 118 Query: 167 LIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +IE+++ G EL G++ + P Y Y Y+ + PA+I ++ Sbjct: 119 VIEEFIVGTELAIGMITTSEGTQVLPAVEVRPVGGVYDYSAMYTGGETRLTAPAEITDEV 178 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + +A + + GISR D + D S + +LE PGMT S+ P A Sbjct: 179 AQAATEMARVVQGELDFFGISRVDAIVDG-SGRPVFLEAGAAPGMTATSLVPVAMKAADL 237 Query: 284 SFRELLLWMVED 295 E+ +V+D Sbjct: 238 DLGEVCSRLVDD 249 >gi|297543611|ref|YP_003675913.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841386|gb|ADH59902.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 325 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 107/290 (36%), Gaps = 27/290 (9%) Query: 25 ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A+++AGF I+ + K DL FN ++ + L + Sbjct: 38 AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKGGSSLG 140 G ++ DK K +V+ G+P ++ + P +KP+ G S G Sbjct: 90 VGSGLDLVATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196 I +++ + G LIE++++G E+T G++G V Sbjct: 150 IDEENIVYDKDKLPQVVRKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + N P ++ ++ ++++ A ++ + + +R D + Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268 Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T S MA AG + E + ++E A Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318 >gi|290473195|ref|YP_003466060.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004] gi|289172493|emb|CBJ79260.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004] Length = 365 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 43/332 (12%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFK-----VSQIDVDRSVG------------LV 45 ++ GGIS E S+SS + + F + D D SV Sbjct: 16 IIFGGISPEHPASVSSFDNLIKSFRELNFDRNLNSIYFFDKDGSVLYNAYTPYISPYDFT 75 Query: 46 LAHLKPDLA-------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 + K DL N+LHGN GEDG +Q + + +I T +L S+LSM Sbjct: 76 HSGDKIDLYTAIKRMSKQSEFHINLLHGNLGEDGHIQGVAKYFKIKGTFGSVLPSSLSMS 135 Query: 93 KMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 K ++ + + L F++ S + VIKP G+SL Sbjct: 136 KYHMSHYINSLLPSLRSPKTLLLTEGNLEKAFSLISDNFPEEKIVIKPNSLGASLFTNKY 195 Query: 145 KKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++ +L + + + + L++ ++ G E + G + + V + Sbjct: 196 VNLENEKKSILDNLKNIFEYDRFALVQAFIKGKEYSVGCIRIEGKAIALNVVEIITKNGF 255 Query: 203 --ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260 + +N + +I + ++ L+ ++ G + R DF+ ++++L Sbjct: 256 FGHDEKHRINKAEEILLIQDSEITRTLKDLSIKIFESTGYEFMCRFDFIVTESE-EIYFL 314 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 E N PGM SIFP+M S L + + Sbjct: 315 ESNPIPGMMKNSIFPKMLKGHKLSIPGLFIHL 346 >gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545] Length = 918 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 137/397 (34%), Gaps = 99/397 (24%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42 +AVL GG S+ER VSL+S ++ L +GF V +D+ Sbjct: 32 VAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTPSDF 91 Query: 43 GLVLAHLKPD-----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85 L + + +AF LHG FGEDG++Q LE +P+ + + Sbjct: 92 DFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDAM 151 Query: 86 ASALSMDKMRSKQV--------------VSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 + + DK + S + ++L T + V+K Sbjct: 152 HACRAFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDY-VVVK 210 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT 190 P +GGSS+G+ + + + + ++++E+Y G+E T V+G + V Sbjct: 211 PARGGSSIGVSIARGVVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVLGTTNEPVP 270 Query: 191 EIAV-------------------------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 I + F +++ + PA+ Sbjct: 271 LIPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKYLPTMHVVYHTPARFGTGAID 330 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPL----------------------SRKVFWLEIN 263 +++R A + +G R +R D F P + ++N Sbjct: 331 KIRRNAASIFKLLGLRDYARLDGFFMPNGDVAVQWCKEELVLGDSESLTTDGVPVFTDVN 390 Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 V GM S + AA G + +L ++ A C R Sbjct: 391 VVCGMEQSSFLFQQAAEIGMTHSAVLRHVLCSA-CHR 426 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A+ G +R D + V +E N PG+TP ++ A Sbjct: 852 NALDIEGFARIDLFLHVDTGDVMIVEANTVPGLTPSTVLFHQALATN 898 Score = 41.0 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36 VL GG +SER+VSL SG L + + V + Sbjct: 465 VLFGGGTSERQVSLMSGTNVWLRLREYPEYDVEPL 499 >gi|289577322|ref|YP_003475949.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9] gi|289527035|gb|ADD01387.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9] Length = 325 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 27/290 (9%) Query: 25 ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A+++AGF I+ + K DL FN ++ + L + Sbjct: 38 AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKGGSSLG 140 G ++ DK K +V+ G+P ++ + P +KP+ G S G Sbjct: 90 VGSGLDLVATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196 I ++ + G LIE++++G E+T G++G V Sbjct: 150 IDEENIVYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + N P ++ ++ ++++ A ++ + + +R D + Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268 Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T S MA AG + E + ++E A Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318 >gi|171318067|ref|ZP_02907237.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171096746|gb|EDT41630.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 336 Score = 85.3 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 12/305 (3%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 +L GG SSE S+++ A + + I+ D L K D N+ +G Sbjct: 21 GILAGGYSSESHGSITNAHALLPYFQRVCQSAAIIEYDGKPSLATRLAKCDFVLNICYGV 80 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM 118 GEDG +Q ++ LEIPY+ S +LASA+ MDK K +V + G LV + Sbjct: 81 GGEDGQIQGLMSSLEIPYSGSPVLASAIGMDKNVFKAMVRNWGFATPNGRLVSSLDPDLT 140 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 +Q L P+V+KPL G S G++ + ++ + + +H ++E+Y+ G T Sbjct: 141 KNQDLGRGPFVVKPLSEGDSEGVVFVDSLDNLAMVINDIPKASHD-HWMVEEYIQGDHGT 199 Query: 179 CGVMGDASLDVTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + D A+ Y+ + + + + ++R + + Sbjct: 200 VSMFRDEDGLHISDAIVFDLPDGHRLYDQALKYRIDNPISIHLLDPAVGERLEREISMMY 259 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 A+ C G++R D++ S +LEIN PG+ P S + SF + L + Sbjct: 260 MALQCEGVTRFDYVI--RSGTPHYLEINTIPGLYPGSNSSRCFSST-MSFEQFLY--IST 314 Query: 296 ASCLR 300 A+ +R Sbjct: 315 AANIR 319 >gi|154173627|ref|YP_001408215.1| D-alanyl-alanine synthetase A [Campylobacter curvus 525.92] gi|112802460|gb|EAT99804.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) [Campylobacter curvus 525.92] Length = 347 Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 47/312 (15%) Query: 2 AVLMGGISSEREVSLSSG---KACASA------LEDAGFKVSQIDVDR------------ 40 V+ G S E E+S+ S K + K I+ Sbjct: 4 GVVFGAKSFEHEISIVSAIVLKNVLKQELSFIFCDKER-KFYLIEPTDMRANFFSSGKYK 62 Query: 41 --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + L+ D+ N++HG GEDG ++ + I Y + A Sbjct: 63 KCKKLFLMACGFYTHSLFGVKRLEVDVYINLIHGMDGEDGKFASLFDFYGISYIGPRLEA 122 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S +S +K +K + GV ++ + P ++KP + GSS+G+ V+K Sbjct: 123 SVMSYNKELTKFLAQKVGVKTLDYEMITYE---ELPKFALPIILKPARLGSSIGVSVVKD 179 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYE 203 + + ++ ++L+E +++G++ ++ K +F YE Sbjct: 180 ESEFEYA--RDVAFEFDKEVLVEPFIEGVKEYNLAGCMIDGKMRFSIVEEPKKKEFLDYE 237 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262 KY S ++ + ++ + F+ G G I R DF +V+ EI Sbjct: 238 QKYMSFSNESKAQEARIDEELRDRLKENFVKIYGFGFEGAIIRCDFFVIE--GEVYLNEI 295 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 296 NPNPGSLANYLF 307 >gi|289524161|ref|ZP_06441015.1| putative D-ala D-ala ligase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502817|gb|EFD23981.1| putative D-ala D-ala ligase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 344 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 119/298 (39%), Gaps = 26/298 (8%) Query: 22 CASALEDAGFKVSQIDVDRS-------VGLVLAHLKPDLAFNVLHGNFGEDGL---VQAI 71 A AL G K + V + + + PD FN+ G + Sbjct: 27 VAKALASVGHKTYVLGVTKKDLRSFDVLENKIKRFWPDCIFNLFEGFSDDSKKEVLFATF 86 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 LE L IP+T +G A S+DK+ +K++++ VP + + + D + L P ++ Sbjct: 87 LESLNIPFTGNGSAALQASLDKLMAKKLLTKKNVPAPKGLCLESTSFDLEGLPCPAFIKP 146 Query: 132 PLKGGSS--LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 + GS ++ + + + +++E++++G E G++G +V Sbjct: 147 RFEDGSVGIDDSSLVTSKSQLKEAVARKILTFPAG-IIVEEFLEGREFNVGLIGLPPYEV 205 Query: 190 TEIAVPKSDFYS-------YELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 I++ + Y Y K+ + P +P ++ + R+A A A+ Sbjct: 206 AGISMIDYEDYPEALPFLDYGAKWDTKSPGYRIAPENPKFLPREMKDSLIRMAKRAGIAL 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 C+G R D +++ +++N P + S +G + L+ ++++ A Sbjct: 266 SCKGYFRVDMR--ERDGEIYVIDVNPNPDLNVESGLANQCRRSGLPYEALISYIIDTA 321 >gi|325917215|ref|ZP_08179442.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325919003|ref|ZP_08181067.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325534787|gb|EGD06719.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325536605|gb|EGD08374.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 73 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G++R D ++ E+N PG T +S++P++ +G +R L+ ++E A Sbjct: 2 GMARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 55 >gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana] Length = 515 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 126/381 (33%), Gaps = 88/381 (23%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42 + ++ GG S+ER +SL+S ++ ++ G V ID D Sbjct: 80 VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139 Query: 43 GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L D+ F V+HG FGEDG +Q +LE IP+ +G Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199 Query: 87 SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + DK + G V S + FT + L V+KP K Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183 GSS+G+ V + D++++E +++ G C + Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319 Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + F + T+ P + P+ + K ++ A L Q Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAA---------------- 279 +G R +R D + + + P GM S + A+ Sbjct: 380 LGLRDFARIDGWYLAPNSNL------SSPISGMEQTSFLFQQASKVIKDIVTLMIIDSYI 433 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G+S +L +V A C R Sbjct: 434 QVGFSHSNILRTIVHRA-CSR 453 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 3 VLMGGISSEREVSLSSGKACASALED 28 V+ GG +SER+VS+ SG L+ Sbjct: 485 VIFGGDTSERQVSVMSGTNVWVNLQR 510 >gi|224368435|ref|YP_002602598.1| DdlB1 [Desulfobacterium autotrophicum HRM2] gi|223691151|gb|ACN14434.1| DdlB1 [Desulfobacterium autotrophicum HRM2] Length = 339 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 110/305 (36%), Gaps = 29/305 (9%) Query: 21 ACASALEDAGFK--VSQIDVDRS-VGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILEL 74 A + AL G++ D+D + + L +KP + FN+ L G+ +V A++E Sbjct: 29 AVSQALSGLGYEPIAVPCDLDLNALKQTLTAMKPAVVFNLVESLDGHGRLIQVVPALVEA 88 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVI 130 L T A L+ K+ +K+ + S G+P I + Q ++I Sbjct: 89 LGYACTGCPAEAIYLTSHKVMAKERMRSLGLPTADWINPVPLDIPWQGAADLGPTGTWII 148 Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----- 182 K L +S ++K + LL + G EQ++ G E +M Sbjct: 149 KSLWEHASLGLELENLVKGNSREIAALLPDRASALGGACFAEQFIQGREFNLSLMDTDKG 208 Query: 183 ----------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 V + + + + ++RL+ Sbjct: 209 VRVLPPAEIIFKGFDHDQPKIVGYRAKWVQDAAEYHNTPRSFDFSPKDAPLIANLERLSL 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G RG +R DF D L F LE+N P ++P + F AG S + + + Sbjct: 269 GCWHGFGLRGYARVDFRVDDLGN-PFILEVNTNPCISPDAGFCAALEQAGISHGQGIHMI 327 Query: 293 VEDAS 297 ++ +S Sbjct: 328 LKQSS 332 >gi|167038556|ref|YP_001666134.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116951|ref|YP_004187110.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857390|gb|ABY95798.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930042|gb|ADV80727.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 325 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%) Query: 25 ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A+++AGF I+ + K DL FN ++ + L + Sbjct: 38 AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140 G ++ DK K +V+S G+P ++ + P +KP+ G S G Sbjct: 90 VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196 I ++ + G LIE++++G E+T G++G V Sbjct: 150 IDEENIIYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + N P ++P ++ ++++ A ++ + + +R D + Sbjct: 210 NVKTNTYEHKMFDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268 Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T S MA AG + E + ++E A Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318 >gi|306520162|ref|ZP_07406509.1| putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein) [Clostridium difficile QCD-32g58] Length = 313 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 126/309 (40%), Gaps = 68/309 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44 +AV+ GG S+E +VSL S A L + + I + R Sbjct: 6 IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65 Query: 45 -------------------VLAHLKPDLA-------------------------FNVLHG 60 ++ L PD F VLHG Sbjct: 66 ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 GEDG VQ + EL I G L+SAL MDK +S ++V S G+ V SIL+ + Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185 Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-- 174 ++ P IKP++ GSS GI I K + + + + ++ H ++++IE+ +DG Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + D + + F+ Y KY+ +S +PA+I LD K +Q A + Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303 Query: 235 HQAIGCRGI 243 ++ +GC G Sbjct: 304 YRTLGCSGF 312 >gi|170104100|ref|XP_001883264.1| predicted protein [Laccaria bicolor S238N-H82] gi|164641717|gb|EDR05976.1| predicted protein [Laccaria bicolor S238N-H82] Length = 375 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 50/326 (15%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLA--------HLKPDLAFNVLHGNFG---EDGLVQ 69 A A AL G++V ++ R++ LA H D+ FN+ G G +G V Sbjct: 40 AIAEALTALGYRVDRVGNARALISRLASYDREDSFHCPWDIVFNICAGRSGIAGREGHVP 99 Query: 70 AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMD 119 +ILE IP+ S +L +DK ++K V+ G+ P +V+ Sbjct: 100 SILECYNIPFVLSDSSTFSLCLDKAKTKMVLEFSGIATAPFAVVHPGQTAEDAIQKSPHR 159 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVI---KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 P +KP + GI + + + G +LIE++++G E Sbjct: 160 PLLYRQLPLFVKPCTESTGKGIWKMSKITNWSQLNQVVQSLQYKFPGHDMLIEKFLNGRE 219 Query: 177 LTCGVMGDASLDVTEIAVPKSD----------------------FYSYELKYSSLNSTHV 214 T G++G A+ FYS+ +K + V Sbjct: 220 FTVGIVGTGENARVIFAMEIKYRLHETKADHDAAQPIASEDDADFYSFAIKSCVHWNEIV 279 Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL---FDPLSRKVFWLEINVQPGMTP- 270 + LA A++ +GCR + R D DP + +E+N PG+ P Sbjct: 280 DLCNGSDQLATRAGELALRAYRCMGCRDVGRIDVRCDVLDPDLAQPHIMELNPLPGIQPG 339 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296 S + A + G S+ L+ +++ A Sbjct: 340 YSDLVKGAEFVGISYEALVGQIMDSA 365 >gi|313619829|gb|EFR91419.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378] Length = 92 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 +I ++++ A A + G+ R+DF ++F E+N PG TP S++P + Sbjct: 2 PEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQE 60 Query: 281 AGYSFRELLLWMVEDA 296 G + L+ +V+ A Sbjct: 61 TGLPYGALIERLVDLA 76 >gi|297170877|gb|ADI21895.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [uncultured gamma proteobacterium HF0130_26L16] Length = 211 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 47/199 (23%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50 +L GG S+E EVS+ S ++ A++ ++V + R+ L + Sbjct: 8 LLFGGQSAEHEVSVVSARSVYQAIDSDRYEVILAGISRTGQWFLEDGEASLLEHSEVSNG 67 Query: 51 --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 D+ F +LHG GEDG VQ +LEL + Y +G+ Sbjct: 68 SGSPVQLGAGQRELVALDGNPVGSTAFDVVFPLLHGPRGEDGSVQGLLELADAAYVGAGV 127 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135 ASA+ MDK ++ V + G+ +++ R + + + P +KP+ Sbjct: 128 AASAVGMDKELARAVFAQAGLRQTEYLVIRRSAWSADRQGALEEIEAKLRYPLFVKPVNL 187 Query: 136 GSSLGIIVIKKDQSIPLDL 154 GSS+GI + QS+ + Sbjct: 188 GSSIGISKVHDSQSLDRAI 206 >gi|213853003|ref|ZP_03382535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 269 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 51/228 (22%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48 + ++ GG S+E EVSL S K A++ F V + +D++ + Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65 Query: 49 ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77 L+P D+ F ++HG GEDG +Q +L + + Sbjct: 66 HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131 P+ S +L+SA MDK +K+++ G+ + P I + + + P +K Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 P GSS+G+ + + + + ++ ++++EQ + G E+ C Sbjct: 186 PANQGSSVGVSKVANEAQYQQAV--ALAFEFDHKVVVEQGIKGREIEC 231 >gi|257459534|ref|ZP_05624643.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268] gi|257442959|gb|EEV18093.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268] Length = 343 Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 45/312 (14%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF------ 55 ++ G S E EVS+ S A +AL+ + D +R + F Sbjct: 4 GIVFGAQSYEHEVSIISAIAVKNALKGWDLEFVFCDKNRKFYRIEDKNMRAAYFKQGSYA 63 Query: 56 -----------------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 N++HG GEDG + A+ E IPY I A Sbjct: 64 KAKELSIGAGGFFESGMFSKSMLEVGTYINLIHGCDGEDGKMAALFEFFGIPYIGPRIEA 123 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 S LS +K+ +K + + V P +V S + P ++KP GSS+GI + K Sbjct: 124 SVLSYNKILTKHLAAIANVKTLPYEIV---NRTSLPNFNFPIIVKPAHLGSSIGISIAKN 180 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYE 203 + L Q+ + ++ + + E + G E + Sbjct: 181 ESEFSYALDQAFELD-DSAIVEPYWENVKEFNLAGAKIDGKIVFSNIEEPKKEGYLNFDR 239 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262 S + PA+ + +++ + A G + R DF +++ EI Sbjct: 240 KYLDFSRSGAIEPARPGALLEGKMKDAFTRLYNAGSFDGALIRCDFF--EKEGEIYLNEI 297 Query: 263 NVQPGMTPVSIF 274 N PG +F Sbjct: 298 NPNPGSLANYLF 309 >gi|307299025|ref|ZP_07578827.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915450|gb|EFN45835.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 315 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 20/290 (6%) Query: 20 KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELL 75 + S+LE F+V ++D L DL FN+ GN + A+L+LL Sbjct: 20 NSVVSSLEKI-FEVDSRPFEIDAVGRLR----GTDLVFNLTTAMGNTERQVHLPAVLDLL 74 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 IP+T SG A+AL ++K +K ++ + G+ V S P ++KP+K Sbjct: 75 GIPFTGSGTTANALCINKTLTKLIMKAYGISTPEFFSVRPGETADNLPFS-PAIVKPVKE 133 Query: 136 GSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLD 188 G + GI + + L+E++++G E T G++ +D Sbjct: 134 GGAKGIWEDSVVESVDDMQRAVSRIHERFQQPALVERFIEGREFTVGIVGNEVLPIMEID 193 Query: 189 VTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + FYSY +K + ++ PAKI ++ + Q + + R D Sbjct: 194 FSSLPDHLETFYSYRVKQFHGDETNYICPAKISRREETVIREFSMRVFQVLDLKDYCRID 253 Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296 D K+++LE+N P + P S +MA G+S+ +L+ +V A Sbjct: 254 LKIDDE-GKIYFLEVNSLPLLVPDYSDIVKMAETRGWSYEDLINRIVASA 302 >gi|115378993|ref|ZP_01466124.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] gi|115363997|gb|EAU63101.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1] Length = 593 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 22/299 (7%) Query: 20 KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74 A A A+E G ++ + +V L PDL FN G + A+ + Sbjct: 27 NALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L PYT S A A+++DK +K +++ G+ V + + + + P ++KP Sbjct: 87 LGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNF 146 Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 GSS GI + + + + +L+E+Y+ G +LT + D + Sbjct: 147 EGSSKGITQDSIAETLDEVRAKVTQALAKYPAGVLVEEYIGGKDLTVPFLAAVDNDYDGV 206 Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238 P + PA I ++V+++A Q + Sbjct: 207 LSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQVL 266 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 CR + R DF ++LEIN P + P + A G ++ +++ A+ Sbjct: 267 DCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQSAA 324 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 7/175 (4%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67 +E + S ++ +A A+ G +V ++ ++ + VLA D+ FN+ G + Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127 V A+LELL+IPYT S ++++DK +K++V G+ L+ + P Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487 Query: 128 YVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 ++KP+ GSS V + + +++ + + L+E+Y+ G E T Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELRE-VVKEIASKYKQPALVEEYIGGREFTV 541 >gi|167040420|ref|YP_001663405.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|300913706|ref|ZP_07131023.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561] gi|307723279|ref|YP_003903030.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513] gi|166854660|gb|ABY93069.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514] gi|300890391|gb|EFK85536.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561] gi|307580340|gb|ADN53739.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513] Length = 325 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%) Query: 25 ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A+++AGF I+ + K DL FN ++ + L + Sbjct: 38 AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNTS--------SMKEVAFLEVFNIPY 89 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140 G ++ DK K +V+S G+P ++ + P +KP+ G S G Sbjct: 90 VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149 Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196 I ++ + G LIE++++G E+T G++G V Sbjct: 150 IDEENIIYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + N P ++P ++ ++++ A ++ + + +R D + Sbjct: 210 NVKTNTYEHKMFDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268 Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296 ++LE+N G+T S MA AG + E + ++E A Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318 >gi|149192572|ref|ZP_01870736.1| D-alanylalanine synthetase [Vibrio shilonii AK1] gi|148833591|gb|EDL50664.1| D-alanylalanine synthetase [Vibrio shilonii AK1] Length = 117 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + + A + R +SR DF K++ E+N PGMTP+S+FP+M ++ Sbjct: 42 EQLNIIHTSAVKVFTQMKLRHLSRIDFFLTE-DNKIYLNEVNTFPGMTPISMFPKMVEHS 100 Query: 282 GYSFRELLLWMVEDA 296 G F E L +E + Sbjct: 101 GLEFSEFLSDCIESS 115 >gi|224437372|ref|ZP_03658344.1| D-alanyl-alanine synthetase A [Helicobacter cinaedi CCUG 18818] gi|313143837|ref|ZP_07806030.1| ligase [Helicobacter cinaedi CCUG 18818] gi|313128868|gb|EFR46485.1| ligase [Helicobacter cinaedi CCUG 18818] Length = 345 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 45/311 (14%) Query: 3 VLMGGISSEREVSLSSGKACASAL---------EDAGFKVSQIDVD-------------- 39 V+ GG+S E E+S+ S A L D+ + I Sbjct: 5 VIFGGVSFEHEISIVSAVALKKVLGERISNFIFLDSLHRFYLIPATLMKSKTFSSGEYKK 64 Query: 40 ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + + P+ +++HG GEDG + A+L+ IP+ I +S Sbjct: 65 CTEIFLQRSSFVKKSLFGFKAIIPNTLISLIHGADGEDGSMSALLDFYHIPFIGPRIESS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 +S +K +K S GV V ++ R + + P ++KP + GSS+G+ V+ K+ Sbjct: 125 VMSFNKALTKIYAQSRGVKVLDHEILTRNSP--NPTLPYPLILKPSRLGSSIGVSVVNKE 182 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYSYE 203 + + ++ + D +++E + G++ C + + + E K Sbjct: 183 DELEYA--KDLAFEYDDSIVVECFKSGVKEYNLAGCKIGDEFRFSIVEEPSKKEMLDFEN 240 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 + VL A I ++ K++Q+ ++ + R DF + +V+ EIN Sbjct: 241 KYLDFSRTAQVLKADISQELEKQIQQNFAKLYENAFEGALIRCDFFV--IDNEVYLNEIN 298 Query: 264 VQPGMTPVSIF 274 PG +F Sbjct: 299 PIPGSMANYLF 309 >gi|188501453|gb|ACD54586.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga] Length = 349 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL------------- 46 +A+L GG S E ++ S K + D ++ I V++ Sbjct: 10 IALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIYVNKDGWYYEDSNNNEQKIHIDR 69 Query: 47 ----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 +K LAF ++ G GEDG +Q L++ +P+ +L+SA++ +K + Sbjct: 70 NNFSLTLPNQETIKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129 Query: 97 KQVVSSCG---------VPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVI 144 ++V S + V S+ V+ + + P ++KP GSSLG+ I Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSD 198 + + + +Q+L+EQ++DG ELT G+ + Sbjct: 190 TEISQLNEAFNVAF--KESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F S S + + PA + +I K V+ ++ + G+ R D + K+F Sbjct: 248 FDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNLSGLVRIDLMLRLPDEKIF 307 Query: 259 WLEINVQPGMTPVSIFPEMAAYA 281 +LE+N P T SI + A + Sbjct: 308 FLEVNTAPSQTEYSIIMQQMAQS 330 >gi|268315712|ref|YP_003289431.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252] gi|262333246|gb|ACY47043.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252] Length = 336 Score = 83.8 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 15/286 (5%) Query: 23 ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80 A+A+ G K +I + + L L+ D ++ G + + E+ IPY Sbjct: 43 AAAIRKLGHKPVRIGTAYDLLVELPDLRIDCGISIAEGARGRNREAYAPMLFEMAGIPYI 102 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSS 138 S L +LS+DK +K +V++ GVP P H + P +KP GSS Sbjct: 103 GSDPLTLSLSLDKAWTKDLVAAAGVPTPPYRTYAGPEDVDPHDLPGPFPLFVKPRYEGSS 162 Query: 139 LGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 GI K + + + + ++++E +++G E T V+G+ + + Sbjct: 163 KGITAASKVHSLEALREQVARLTATYRQEVIVEPFIEGSEFTVAVIGNNPPEPLPVLQRA 222 Query: 197 SDFYSYELKYSSLNSTHVL--------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + ++ + + ++ + +Q+LA ++ + CR +R DF Sbjct: 223 VEATTGIGLHALEHRGMKPAAALEAAPYVPLTDELERCLQQLAVRVYEKLQCRDFARLDF 282 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 D K ++LEIN P P F +A + E L +++ Sbjct: 283 RVDRE-GKPWFLEINPLPTFAPDGTFAILAELMQRPYVEFLAEILQ 327 >gi|32265630|ref|NP_859662.1| D-alanyl-alanine synthetase A [Helicobacter hepaticus ATCC 51449] gi|39930848|sp|Q7VJW2|DDL_HELHP RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gi|32261678|gb|AAP76728.1| D-alanine-D-alanine ligase [Helicobacter hepaticus ATCC 51449] Length = 350 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 67/315 (21%), Positives = 120/315 (38%), Gaps = 48/315 (15%) Query: 3 VLMGGISSEREVSLSSGKACASAL-EDAG--------FKVSQIDVD-------------- 39 VL GG+S E E+S+ S A L E G + I +D Sbjct: 5 VLFGGVSFEHEISIVSAVALKKVLGESIGNFIFLDSSHRFYLIPLDSMKSKLFSSGDYKK 64 Query: 40 ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + + P N++HG GEDG V A+L+ +P+ I +S Sbjct: 65 CTEIFLQRGAFVKKTFFGFKPIIPHTLINLIHGADGEDGSVSALLDFYHLPFIGPRIESS 124 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 +S +K+ +K + GV V ++ R +H I+ P ++KP + GSS+G+ VI ++ Sbjct: 125 VMSFNKVFTKIFAAQRGVKVLDYEILTRANPHLKH-IAYPIILKPARLGSSIGVSVINEE 183 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIE------LTCGVMGDASLDVTEIAVPKSDFYS 201 + + D + ++ + D ++ E + G++ + I P Sbjct: 184 KEL--DYGRDLAFEYDDTIIAESFKSGVKEYNLAGCRVKNGSQDEYRFSIIEEPSKKELL 241 Query: 202 YELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + S A I + ++Q ++ + R DF + +V+ Sbjct: 242 DFERKYLDFSRTAQVLQADISSALVAKLQENFMKLYENAFEGALIRCDFFV--IDDEVYL 299 Query: 260 LEINVQPGMTPVSIF 274 EIN PG +F Sbjct: 300 NEINPIPGSMANYLF 314 >gi|237751270|ref|ZP_04581750.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879] gi|229372636|gb|EEO23027.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879] Length = 349 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 112/332 (33%), Gaps = 55/332 (16%) Query: 3 VLMGGISSEREVSLSSGKACASALEDA-----------GFKVSQIDVD------RSVGLV 45 ++ GGIS E E+S+ S A L I+ S Sbjct: 5 IIFGGISYEHEISIVSAITMAQKLGKNIKITHFIFLDSNHDFYLIESSNMKSKYFSSLAY 64 Query: 46 LAHLKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84 K ++ N++HG GEDG++ + + +I Y + Sbjct: 65 KQAKKIEIGAGGFYESGFLGKKKMLNTGLLLNLIHGGDGEDGVLSGLFDFYKIAYIGPRL 124 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 AS LS +K +K CGV P ++ R + PY+IKP GSS+G+ V+ Sbjct: 125 EASILSYNKRLTKLYAKECGVETLPYYVLKRNETC-EIPFELPYIIKPTCLGSSIGVCVV 183 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + L + ++++IE + GI+ + + + + Sbjct: 184 EDQAKLSYGLDCAF--EFSNEVIIEPFKKGIKEYNLAGTKVNGEFILSLIEEPVKKDLLG 241 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWL 260 +I + + + A + I + R DF S K++ Sbjct: 242 FEDKYLDFSRTEEIKNAEITESLTKNLHEAFKKIYNTTFEGALIRCDFFV--SSDKIYLN 299 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 EIN PG +F F +L + Sbjct: 300 EINPIPGSMANYLFS--------DFESVLEKI 323 >gi|188501473|gb|ACD54605.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga] Length = 349 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 51/342 (14%) Query: 1 MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL------------- 46 +A+L GG S E ++ S K + D ++ I V++ Sbjct: 10 VALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIHVNKDGWYYEDSNNNGQRIHIDR 69 Query: 47 ----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 +K LAF ++ G GEDG +Q L++ +P+ +L+SA++ +K + Sbjct: 70 NNFSLTLPNQETVKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129 Query: 97 KQVVSSCG---VPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVI 144 ++V S + V PSI V R + P ++KP GSSLG+ I Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDLLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSD 198 + + + +Q+L+EQ++DG ELT G+ + Sbjct: 190 TEISQLNEAFNVAF--KESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 F S S + + PA + ++ K+V+ ++ + G+ R D + K+F Sbjct: 248 FDSETKFEGSPETQVITPANLNEEVKKQVEAGVRELYEKLNLSGLVRIDLMLKLPDEKIF 307 Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYS-------FRELLLWMV 293 +LE+N P T S+ + A + ++ +++L ++ Sbjct: 308 FLEVNTAPSQTEYSLIMQQMAQSEWAGDKRIELYKQLFKEVI 349 >gi|182413979|ref|YP_001819045.1| D-alanine--D-alanine ligase domain-containing protein [Opitutus terrae PB90-1] gi|177841193|gb|ACB75445.1| D-alanine--D-alanine ligase domain protein [Opitutus terrae PB90-1] Length = 339 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 117/295 (39%), Gaps = 23/295 (7%) Query: 20 KACASALEDAGF---KVSQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILE 73 +AL + G+ ++ D + + +PD+ FN+ N D + + L Sbjct: 36 AGVLAALNELGYPNEHLAIFDDLEPLRQKVQAFQPDVVFNLADQFRNNRAFDQHIVSFLA 95 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKP 132 + +IP+T G L K SK+++S + ++ R + + P ++KP Sbjct: 96 MSDIPFTGCGSTGLTLCKHKGVSKKILSYHRIHTPAFAIIPRGRRAVRPKRLKFPILVKP 155 Query: 133 LKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-- 188 LK +S GI + + ++ + + E+Y++G EL ++G+ L Sbjct: 156 LKEEASYGIAQASFVETDEQFRERVEFVHQKFNNDAIAEEYIEGRELYVSLLGNHRLQVF 215 Query: 189 ------VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-----IYKEVQRLAFLAHQA 237 E+ + +Y+ K+ ++ + ++++ ++ Sbjct: 216 PIRELVFREVPPDEPKIATYKAKWDEAYRARWGLENRFVEDLEPALVRKIEATCRRIYRL 275 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G +R D + +++++E N P + P F A AG S+ +L+ + Sbjct: 276 LTIDGYARLDLRLNAR-NELWFIEANANPILAPDEDFALSAGKAGLSYPQLIDRI 329 >gi|21227150|ref|NP_633072.1| D-alanine-D-alanine ligase-like protein [Methanosarcina mazei Go1] gi|20905483|gb|AAM30744.1| D-alanine-D-alanine ligase related protein [Methanosarcina mazei Go1] Length = 700 Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 119/292 (40%), Gaps = 24/292 (8%) Query: 31 FKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGI 84 K + +D ++ L K DL N+ F D V A+ E L IPYT +G Sbjct: 350 IKFTFLDRHETLFEDLRKKAGKTDLVLNLCDEGFYNDPVKELHVPAMFEQLNIPYTGAGP 409 Query: 85 LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL---GI 141 A DK + V +PV +LV + S+ +S P ++KP G SS Sbjct: 410 QCLAYCYDKSLVRGVAREMRIPVAKGVLVTDDSDISRLSLSFPLLVKPNSGDSSFGITQK 469 Query: 142 IVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF- 199 ++ + + + ++ LL+E+++ G +++ G++G+ + Sbjct: 470 SIVHSREELLDIMKETREKIGSDKPLLLEEFLPGKDISVGIIGNPPSCTVLPITEEDYSA 529 Query: 200 --------YSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 YE K+ +S + PA +P KEV R +GCR +R D+ Sbjct: 530 VPGELPKICGYEAKWLPDSSYWKIKSVPADLPEKTQKEVVRSCLALFTRLGCRDYARFDW 589 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 D + LE+N PG +MAAYA S+ +L ++ A+ R Sbjct: 590 RLDAE-GRPRLLEVNPNPGWCWDGHLAKMAAYANISYSGMLAAII-GAAKKR 639 >gi|292493558|ref|YP_003528997.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4] gi|291582153|gb|ADE16610.1| D-alanine--D-alanine ligase domain protein [Nitrosococcus halophilus Nc4] Length = 350 Score = 82.2 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 113/298 (37%), Gaps = 24/298 (8%) Query: 22 CASALEDA-GFKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQAILELLE 76 AL + ++ + +D ++ L PD N ++ + A+LE+L Sbjct: 49 VKEALGELQDYRFTYLDNHSTLIANLTADPPDFVLNFCDTGYKNQARQELHIPALLEMLG 108 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 IPY+ +G + DK + V + G+PV V + P +IKP + Sbjct: 109 IPYSGAGPTCLGMCYDKSLVRSVARTHGIPVPAETFVRGNDRHGAVSQNFPVLIKPNRAD 168 Query: 137 SSLGIIVI---KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 SLGI +Q L + + LLI++++ G E + GV+G+ + + Sbjct: 169 GSLGITKDSLVHDEQQARAYLNKLAMEFPNWDLLIQEFLPGEEYSVGVLGNPASGFMILP 228 Query: 194 VPKSDFYSYEL---------------KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D+ + A + D+ + + + + Sbjct: 229 ILAVDYSKLVASRLPPILAYASKIDPQSPYWTDIKYCEASLKEDLRQRLVDYCLFLFERL 288 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCR +R DF D ++ LE+N P MA +AGY + ELL ++ A Sbjct: 289 GCRDYARFDFRTDAQ-GEIKLLEVNPNPAWCWDGKLNLMAGFAGYHYAELLERILHAA 345 >gi|218462035|ref|ZP_03502126.1| putative D-alanine--D-alanine ligase A [Rhizobium etli Kim 5] Length = 268 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 43/220 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49 +AVL GG S+E EVS+ S AL+ + I + R + + Sbjct: 10 IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAFPIFITREGRWLTSAFVDGALATPSSG 69 Query: 50 --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F VLHG GEDG VQ + ++ +P G Sbjct: 70 TEICLVPGGCGRVMAIPANGAPHELATIDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCG 129 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 IL SA ++DK +K+++ + G+PV ++ ++ T S + + P IKP + GSS+ Sbjct: 130 ILGSAAALDKEIAKRLLRAAGLPVARAVTIHEGTSPSLAALEGELGLPLFIKPARQGSSV 189 Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 G+ + Q L + ++ H LL E+++ G E+ Sbjct: 190 GVAKVHASQEFAGAL--AEAFRHDRTLLAEEFIVGREIEF 227 >gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum] Length = 640 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 119/297 (40%), Gaps = 25/297 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73 K + + +K +D + L + + FN+ F + ++A + E Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 +L + YT +G L DK + K + SS G+PV ++ S + P ++KP Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440 Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 G +S V++ + + + W + +L+E++V+G++LT ++G+ DV Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPHDV 500 Query: 190 TEIAVPKSDFY---------SYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237 + + +Y K+ + +P ++P + +++ Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + CR +R D+ LE+N PG F + G+S+R +L ++ Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEILR 616 >gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum] Length = 640 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 119/297 (40%), Gaps = 25/297 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73 K + + +K +D + L + + FN+ F + ++A + E Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 +L + YT +G L DK + K + SS G+PV ++ S + P ++KP Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440 Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189 G +S V++ + + + W + +L+E++V+G++LT ++G+ DV Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPQDV 500 Query: 190 TEIAVPKSDFY---------SYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237 + + +Y K+ + +P ++P + +++ Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + CR +R D+ LE+N PG F + G+S+R +L ++ Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEILR 616 >gi|301513415|ref|ZP_07238652.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058] gi|301596388|ref|ZP_07241396.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059] Length = 137 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 2/111 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 +AVL+GG S+ER VSL SG+A AL +G + D L + D AF VLHG Sbjct: 10 VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 GEDG +Q +LE L IPYT +G+ SA+ MDK+++KQ+ +P P Sbjct: 68 RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYR 118 >gi|326330649|ref|ZP_08196953.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] gi|325951490|gb|EGD43526.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1] Length = 371 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 55/323 (17%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------- 53 ++ GG S+E ++S+ +G L AG +V+ + RS L K + Sbjct: 8 IVFGGPSAEHDISILTGLQAERVLSGAGVEVTCLYWARSDKWFLVPAKQEARDFLGGEPK 67 Query: 54 ---------------------------------AFNVLHGNFGEDGLVQAILELLEIPYT 80 + HG GE G +Q + EL + T Sbjct: 68 GSKAVEFRLGTEKGDGFYTVGGFGGGKRLETGPILSAFHGGAGEAGGIQWLFELAGLKAT 127 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 + ++AL MDK+ V+ + G+P S+ + + PY++KP GGSS+G Sbjct: 128 GATPASAALGMDKLAFGAVMLNAGLP---SLQRELLSRYAAPSFEGPYIVKPRFGGSSIG 184 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----- 195 I V+ L LL +S ++ D +L V + V+++ P Sbjct: 185 IEVVDD-YETGLALLNTSPHLRAGAVVEPYRPDLFDLNASVRTAPEIAVSDVERPLRSDE 243 Query: 196 ---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 Y +S PA++ + K+++ LA + G GI R DFL D Sbjct: 244 AKMYDYSAKYVHTDGLSSSPREFPAQVEESVTKQIKDLAVRVVELTGLTGILRIDFLSDG 303 Query: 253 LSRKVFWLEINVQPGMTPVSIFP 275 +VF E+N PG + ++P Sbjct: 304 K-GEVFINEVNSIPGALSLYLWP 325 >gi|307750582|gb|ADN92458.1| truncated D-alanine D-alanine ligase [Enterococcus faecium] Length = 230 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 48/227 (21%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53 + +L GG S+E EVS+ S + +A+ ++V + + + V L KP D+ Sbjct: 3 ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62 Query: 54 ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 F VLHG GEDG +Q LE L +PY +G Sbjct: 63 HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134 +L SA +MDK+ +K ++ + GVP P + V + + + P +KP Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 GSS+GI + + + L ++++ + + ++EQ ++ E Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEARENRSCC 227 >gi|77165687|ref|YP_344212.1| hypothetical protein Noc_2222 [Nitrosococcus oceani ATCC 19707] gi|254434399|ref|ZP_05047907.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27] gi|76884001|gb|ABA58682.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207090732|gb|EDZ68003.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27] Length = 354 Score = 79.9 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 25/303 (8%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQAILEL 74 K L D ++ + +D ++ L PD N ++ V A LE+ Sbjct: 42 AKEALGELRD--YQFTYLDNHSALLPQLIADPPDFVLNFCDTGYKNRARQELHVPAFLEM 99 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 L IPY+ + L DK + V + GVPV V+ ++ L + P +IKP + Sbjct: 100 LGIPYSGARPACLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKNFPALIKPNR 159 Query: 135 GGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-----------G 180 G S ++ + + + + LLI++++ G E + Sbjct: 160 GDGSVGITENSLVYDEPQAHAYINKLAMEFPNCDLLIQEFLPGDEYSVGLLGNPSSGFKI 219 Query: 181 VMGDASLDVTEIAVPKSDFYSYELK----YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + A +Y K A + + + + L + Sbjct: 220 LPILKVDYSRLAAHRLPPILAYASKVDSASPYWTDIQYAKAAMDEGLRQRLVGYCRLLFE 279 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +GCR +R DF D +V LE+N P MA +AGY + ELL W+++ A Sbjct: 280 RLGCRDYARFDFRADVQ-GEVKLLEVNPNPAWCWDGKLNLMAGFAGYRYGELLEWILQAA 338 Query: 297 SCL 299 Sbjct: 339 QAR 341 >gi|307352683|ref|YP_003893734.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571] gi|307155916|gb|ADN35296.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571] Length = 635 Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 26/298 (8%) Query: 24 SALEDAG-FKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNF----GEDGLVQAILELLE 76 AL + G ++ + D S+ L K D FN+ F ++ V A LE+L Sbjct: 329 EALSELGDYEFTYFDNHSSMLSWLRQSGSKADFIFNLCDEGFLNDPRKELHVPAALEILS 388 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKG 135 IPYT A DK + + +PV ++ + + I P ++KP G Sbjct: 389 IPYTGGNPQCLAYCYDKSLVRGIAKELDIPVPRAFVINPEDSSFIEFPIHFPVIVKPNFG 448 Query: 136 GSSL---GIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVM--------- 182 SS V + + +L+ S++ +L+E+++ G +++ G++ Sbjct: 449 DSSFGITQNSVCRDISELQDAILRLKSFSGDCGTVLVEEFLTGGDISVGIIGNLPDKYEV 508 Query: 183 -GDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAI 238 D + + YE K+ + +PA + + + + + Sbjct: 509 LPVIEEDYSSLPRGYPKICGYEAKWDPESPYAGITSIPADLSEEARRFLVASCLKLFGRL 568 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 GCR +R D+ D + LE+N PG +MA A ++ E+L +++ A Sbjct: 569 GCRDYARFDWRID-SNGTPRLLEVNPNPGWCWDGHLAKMAGIAEITYAEMLGMILKAA 625 >gi|289524162|ref|ZP_06441016.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502818|gb|EFD23982.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 353 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 118/307 (38%), Gaps = 23/307 (7%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN---FGEDGL 67 E + S S+ A A +E GFK + + + LA+ + D FN+ G G + Sbjct: 38 EYD-SQSTVDALAKEIESFGFKTLLCEQNEDLPSKLANQRLDFMFNIAEGIGTERGRESQ 96 Query: 68 VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126 + +LE L IPY+ S ++ A+S+DK + V++ VPV L + Sbjct: 97 IPCLLESLGIPYSGSDPVSLAISLDKYLTNVVLNRENVPVPFMTLFRSEDDLRNVDMLFQ 156 Query: 127 ----PYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-----YVDG 174 Y+ KP GSS G+ + + + ++L+ ++ G Sbjct: 157 DNNETYIAKPRWEGSSKGVFRDSICRNPNELKRNVLRIFERYRQPAIIEAFLPGIEITAG 216 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL----PAKIPLDIYKEVQRL 230 I + P D + + P I + +E + Sbjct: 217 IVGNGSDARLLGMMKISERKPSDDGVFLYSLEHKRDWLECILYEGPEAINEKVRREAAMI 276 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289 A A A+ R I+R D D ++ ++IN PG++P S P + + +G ++ +L+ Sbjct: 277 ALDAFHALELRDIARIDMRMDGQ-GQLRVIDINPLPGLSPYYSDLPILYSLSGGNYHDLI 335 Query: 290 LWMVEDA 296 + A Sbjct: 336 SQISRSA 342 >gi|254459120|ref|ZP_05072542.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1] gi|207084013|gb|EDZ61303.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1] Length = 345 Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 111/310 (35%), Gaps = 43/310 (13%) Query: 3 VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVDR----SVGLVLAHL 49 +L GG S E E+S+ S L D K I+ + + Sbjct: 5 ILFGGASFEHEISIVSAITLKGKLSGFDLSFVFCDQDHKFYLIEASKMKATTFSRGEHKK 64 Query: 50 KPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 P L N++HG GEDG + ++L+ I Y AS Sbjct: 65 MPQLSITNGSFSQKTMFSSVEHTGTVLNLIHGADGEDGTIASLLDFFSIKYIGPRTDASV 124 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148 S DK +K + + + +++ + ++ P +IKP + GSS+G+ +++ + Sbjct: 125 FSYDKRYTKWLCVAKNIKSVEYEVLSSKEHTNINIPYP-IIIKPARLGSSIGVSIVRNES 183 Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + L + +++E +++G++ A +V V + + Sbjct: 184 ELDYALDVAF--EFDKTVIVEPFIEGVKEYNLAGFMAKGEVYFSIVEEPQKEEFLDFEKK 241 Query: 209 LNSTHVLPAK----IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 I ++ +++R ++ + + R DF + KV EIN Sbjct: 242 YMDFSRSEKVLKAGISPELEVKLKRAFEKVYKNLFEGALIRCDFFV--VDGKVLLNEINP 299 Query: 265 QPGMTPVSIF 274 PG +F Sbjct: 300 IPGSMANYLF 309 >gi|328463794|gb|EGF35346.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462] Length = 252 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 49/246 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40 + VL GG S+ER VS+SSG +AL G + + ID+ + Sbjct: 3 IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62 Query: 41 SV--------GLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILEL 74 + + L+ D+ F LHG GE+G VQA L+L Sbjct: 63 DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133 + YT SG LAS ++M+K+ SK+V+ G+ R P V+KP Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193 GGSS+G + + + + + + + ++E++ G E + GV+ + EI Sbjct: 183 SGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240 Query: 194 VPKSDF 199 V + Sbjct: 241 VHSGWY 246 >gi|291286724|ref|YP_003503540.1| hypothetical protein Dacet_0804 [Denitrovibrio acetiphilus DSM 12809] gi|290883884|gb|ADD67584.1| protein of unknown function DUF201 [Denitrovibrio acetiphilus DSM 12809] Length = 329 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 103/308 (33%), Gaps = 23/308 (7%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH---GNFGE 64 S+++EV L + SAL G K ++ + AH +PD FN++ G + Sbjct: 21 SADKEV-LDQAEEIKSALISLGAKPYVTGYKNALKKLSAHKDRPDAVFNLVESVNGTDRD 79 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQH 122 PYT S + + DK+ K+V++ C + P+ Sbjct: 80 MYRAAMFFHNSYYPYTGSPYKSLQVLSDKVVMKRVMADCDILTPMWHKYNEPDTFFHKGE 139 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P S I+ + + N + E+Y+DG E V+ Sbjct: 140 YIVKPLYEHGSFKISGESIVSMIDVDDADSKVAGMHPDNP-EIFFAERYIDGREFNISVI 198 Query: 183 G--------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 D V + + + +S + ++++ Sbjct: 199 EVKGEPVLLPLAEIVFEGYDGKRKIVCEKAKWDENSEEASGTVRTFGTVSKGSRLEEKIE 258 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++ G +R D D L + + LE+N P + + F AGYS ++ Sbjct: 259 KITLKCWDKFNLSGYARVDIRVDAL-GEPYVLEVNANPTLAKDAGFFAACTEAGYSHNQM 317 Query: 289 LLWMVEDA 296 + ++ A Sbjct: 318 IELIILAA 325 >gi|322382667|ref|ZP_08056531.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153365|gb|EFX45788.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 125 Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA + + ++Q A ++A+GC+G+SR D + ++ E+N PG T S +P Sbjct: 43 PANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFL-QKNGRIILNEVNTLPGFTVYSRYP 101 Query: 276 EMAAYAGYSFRELLLWMVEDA 296 M A AG + L+ + A Sbjct: 102 RMMAAAGMTLSGLIDHCITLA 122 >gi|307322537|ref|ZP_07601883.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gi|306891819|gb|EFN22659.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 361 Score = 78.8 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 120/344 (34%), Gaps = 54/344 (15%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + ++ GG S E + S+ A + + D+ + ++ Sbjct: 3 VTLIYGGRSVEHDWSI----AIYNHFAEILNNARDPDISPAFVYYISRTGDLLRLALEGG 58 Query: 51 -----PDL----------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 PD F++L G GEDG +QA+ + +IP + Sbjct: 59 RLPKHPDFTARAETHALASLAHLLRSDGVFVFSLLQGQDGEDGQIQALAQFYDIPGSFGD 118 Query: 84 ILASALSMDKM-------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136 +++ L+ DK R ++ + + ++ P V+KP G Sbjct: 119 KVSAMLATDKYLQGIVANRLCPELTPIPTVHVVQRNLELGFAKALRRLAGPCVLKPNTLG 178 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 S + L H L+++ + G E TCGV+ D Sbjct: 179 GSFLTEYTDELSEDRLRSYSERVALHDPSFLVQERIAGTEYTCGVLVDRHEVTALPVARI 238 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 S+ + + + D I + ++ + R DF+ D + Sbjct: 239 SNPSGFLGYDQKTQKGYSVDFLDVEDTIQSRLSSISKQIAREFRVHTFGRLDFIVDEQ-Q 297 Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ++++LE+N+ PG+T +IFP+M AG+ +L ++ A+ Sbjct: 298 RIYFLELNLIPGLTAEAIFPKMLTKAGF---DLC-HLIRLAAAN 337 >gi|65319914|ref|ZP_00392873.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] Length = 110 Score = 78.8 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 57/94 (60%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 + V+MGG+SSE++VS+ +G + L+ +++ I ++ + L+ D A LHG Sbjct: 10 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 +GEDG VQ LE L IPY+ S +L+S + MDK Sbjct: 70 KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKN 103 >gi|183221182|ref|YP_001839178.1| putative D-alanine--d-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911273|ref|YP_001962828.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775949|gb|ABZ94250.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779604|gb|ABZ97902.1| Putative D-alanine--d-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 329 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 11/281 (3%) Query: 24 SALEDAGFKVSQIDVDRSVGLVLA-----HLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 ++ G+ V ++ + LA + K + +N + G + Sbjct: 33 KTIQSLGYDVVVLNHPTEITSALAGIPKSNRKNWIVWNFIEGYLSPSREAYIPALCEYLG 92 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 H+G A+ ++ + K + + + + IS P +KP GSS Sbjct: 93 IPHTGSHAAVQTLTLDKYKTKLYLASFGIPTLVSQLIDSESELPRISYPLFVKPNGEGSS 152 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 LGI S Q LL+E Y+ G E+T G+MG+ Sbjct: 153 LGITDANVIHSKDDWDTQVPKLLETFSPLLVEPYLSGEEVTVGIMGNQGNYQVLPIAYVK 212 Query: 198 DFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255 + S + +P + +++ ++ + +G G R DF + Sbjct: 213 TPSGVYHEGIKSKSEFLESLDFDLPNHLCSQIESISLQIAERLGSSGYLRIDFKL--ENE 270 Query: 256 KVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVED 295 K F+LE N PG + + S P + +G S+ ELL + +E Sbjct: 271 KPFFLEANATPGFSHIYSTLPLLWERSGRSYSELLQYSLEL 311 >gi|330862509|emb|CBX72666.1| hypothetical protein YEW_AY05340 [Yersinia enterocolitica W22703] Length = 65 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 + V+ GG S+E EVSL S K A++ F V+ + +D+ Sbjct: 6 VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKW 49 >gi|284517204|gb|ADB92102.1| D-alanyl-D-alanine ligase [Paenibacillus popilliae] Length = 65 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++A+GC+G+SR D + ++ E+N PG T S +P M A AG + L+ + Sbjct: 1 IYKALGCKGLSRVDMFL-QENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCI 59 Query: 294 EDA 296 A Sbjct: 60 TLA 62 >gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus 5a2] gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus 5a2] Length = 421 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 63/408 (15%), Positives = 123/408 (30%), Gaps = 114/408 (27%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------------------DV 38 + ++MGG S+ER +S+ SG+ L +G + I D Sbjct: 3 IGIIMGGFSAERHISVESGRNVYEKLASSGTYTPIPIFLTGTPLQHSLFILPIHILLKDS 62 Query: 39 DRSVGLVLAHLK-----------------------------------------PDLAFNV 57 + L H+ D F Sbjct: 63 ADDIHERLKHISTTTDNSTNWTEEPAIDSIIKKYVGSFTMQPTAITYQELAHLVDSVFIA 122 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 LHG GEDG +QAILE +PY SG+ ++L++DK + + + G+ V +V Sbjct: 123 LHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKHGIYVANQAVVTIDQ 182 Query: 118 MDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + P+++KP+ G S+ + I+ + + + Sbjct: 183 WKNNTPATIETIEATFKYPFIVKPVDDGCSVAVFKIQNKDMLIAYAENIFRADSNQPTNL 242 Query: 169 EQYVDGIE----------------------------------------LTCGVMGDASLD 188 Q + + + + Sbjct: 243 TQVLGLKPNAAFPNYQQFLVEDLIEKGTATHFLEITGGLLTHLDEQGNRQYEMFEPSEVV 302 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 T + + + + + L I +V+ Q + G +R D Sbjct: 303 ATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQKVAQLVNIEGYARIDA 362 Query: 249 LFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + + + +EIN P +TP + A GY+ + + +++ Sbjct: 363 MVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYTPFDFIHTIIQ 410 >gi|88812924|ref|ZP_01128168.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231] gi|88789846|gb|EAR20969.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231] Length = 348 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 29/306 (9%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG----LVQAI 71 L + +AL GF + +D ++ L P LAFN+ F D + A+ Sbjct: 42 LKTA---LAAL--EGFTFTYLDDHTTLLDDLRQRPPSLAFNLCDVGFRNDTARELNIPAL 96 Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131 LE+L I Y+ + + +L+ DK + V S G+PV + V+ P +IK Sbjct: 97 LEILNISYSGADPVGMSLATDKSIVRVVARSLGIPVPNEMFVDLGADPLVLPALYPALIK 156 Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 P S GI V L + + LI+ ++ G E T G++G+AS Sbjct: 157 PNFSDGSFGITADCVAHDAAEAERYLHWLAGELERPEALIQDFLTGTEYTVGLIGNASQG 216 Query: 189 VTEIAV------------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA-- 234 T + P Y+ + S + + +D + + Sbjct: 217 FTYLPPLEVDYSRLDPELPPILSYASKADPDSPYWQKLRFRRARIDEVTRGRLYEYCTLL 276 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + +G R R DF + LE+N P MA+YAGYS+ +LL ++ Sbjct: 277 FKRLGLRDYGRFDFR-AGADGEPRLLEVNHNPAWAWDGKLSLMASYAGYSYSDLLRLIL- 334 Query: 295 DASCLR 300 A+ +R Sbjct: 335 -AAAMR 339 >gi|90022373|ref|YP_528200.1| carbamoyl phosphate synthase large subunit [Saccharophagus degradans 2-40] gi|89951973|gb|ABD81988.1| carbamoyl-phosphate synthase large subunit [Saccharophagus degradans 2-40] Length = 1077 Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWETVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +LE + + A + D+ R Q + G+ + Sbjct: 89 TMGGQTALNCALALHKHGVLEEFGVELIGATEDAIDKAEDRNRFDQAMKKIGLECARAKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 VHTMEEANQVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPEDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL +AG++ + D D V ++ KP Sbjct: 582 VHAALASREAGYEAIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHREKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ + P + + Sbjct: 642 GGQTPLKLANALEAEGVPIIGTSPEAIDRAEDRERFQQMIQRLELLQPPNAIVRSTEEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + P V++P + ++ + + + ++ + +L++ + + IE+ Sbjct: 702 HIAPTVGYPLVVRPSYVLGGRAMEIVYTENELRTYMREAVQASEDSPVLLDHFLNNAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P D+ E++ + Sbjct: 762 DIDAVSDGERVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPEDVQDEMREQVRKMARE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + +++ +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNVQLAY--QDGRIYVIEVNPRGSRT----VPFVSKCIGVSLAKI 863 >gi|313619832|gb|EFR91421.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378] Length = 274 Score = 75.7 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 52/204 (25%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52 +L GG S+E EVSL + + +AL+ F+ I + V L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66 Query: 53 ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79 + F +LHG GEDG VQ + E+L IPY Sbjct: 67 SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126 Query: 80 THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130 +G+LAS+ +MDK+ K++ + G+P + + +++ P + Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMITEMEEVLTYPVFV 186 Query: 131 KPLKGGSSLGIIVIKKDQSIPLDL 154 KP GSS+GI + + Sbjct: 187 KPANLGSSVGISKATNKTELIEAM 210 >gi|325914335|ref|ZP_08176682.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325539343|gb|EGD10992.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 157 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52 + ++ GG S+E EVSL S + AL+ F+ I +D+ L+ PD Sbjct: 81 VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHLSA--PD 130 >gi|300361814|ref|ZP_07057991.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri JV-V03] gi|300354433|gb|EFJ70304.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri JV-V03] Length = 1062 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIIQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLEKHGVKILGTTVKDLNRAEDRELFDQIIKKLQLNQPKGLTATTHDGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P D+ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSRT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|21321301|dbj|BAB97388.1| D-alanine-D-alanine ligase [Pectobacterium chrysanthemi] Length = 368 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 20/296 (6%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70 ER + + SA D G +I+ + + F HG +GEDG +Q Sbjct: 57 ERGI-----TSIESAFIDLGLNYKKIESTDNNLQY-EINNHNFVFIYAHGEYGEDGRLQG 110 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLIS 125 L+ ++ PY SG+LASA+ DK++ K +++ V + Sbjct: 111 FLDYIDKPYPGSGVLASAVCCDKLKFKYLMTGSSVNTPNFYELNIHDSYSDVHKKALCLQ 170 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P + K GGSSLGI I D+ + + N ++ +E+++ G ++ G + Sbjct: 171 YPIMAKERCGGSSLGITYISNDEDLHT--WYEKNKNEINKYFLEKFISGRIISVGFVQMI 228 Query: 186 SLDVTEIAVPKSDFYSYEL------KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + +Y + I ++++ A A + Sbjct: 229 EGVLILPTLETVTNSNYYDAELKIGHSHHDVKYILNSFSSKEYIDRKIKETAIKAFEHAA 288 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 C+G+ R L + +F LEIN PG++ S F +M G+S+ EL++ + Sbjct: 289 CQGVGRV-DLIIDDNDDIFILEINTIPGISKNSNFTKMFTSLGFSYNELVIAFIRT 343 >gi|220934153|ref|YP_002513052.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995463|gb|ACL72065.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 1072 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADAVYIEPVEWKTVARIIEREKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L+ + + A ++ D+ R + ++ G+ + Sbjct: 89 TMGGQTALNCALDLAKHGVLKKHNVELIGASEDAIDMAEDRERFRDAMTEIGLESPMAFV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +++ +E+ Sbjct: 149 VNTWDEAQEVQPKIGFPVIIRPSFTMGGSGGGIAYNRDEYEEIVKRGLDLSPTNEVQVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFAVNPDDGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 91/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPRGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTTPDSIDLAEDRERFQQLIDRLELVQPPNRTARSVEDAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ ++ + + + ++ +L+++++D +E+ Sbjct: 702 SKAEEIGYPVVVRPSYVLGGRAMEIVYNEEDLRRYMRSAVQVSNDAPVLLDRFLDDAVEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + I E++ Sbjct: 762 DVDAICDGEEVLIGGVMQHIEQAG---VHSGDSACSLPPYSLDKKIQDELREQVRKMAFG 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ + F KV+ LE+N + T P ++ G ++ Sbjct: 819 LKVVGLMNTQFAV--QGDKVYVLEVNPRASRT----VPFVSKAIGKPLAKIAAR 866 >gi|269927660|gb|ACZ53133.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927664|gb|ACZ53135.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|269927602|gb|ACZ53104.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927620|gb|ACZ53113.1| D-alanine-D-alanine ligase [Lactobacillus reuteri mlc3] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|269927476|gb|ACZ53041.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|269927458|gb|ACZ53032.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927508|gb|ACZ53057.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927510|gb|ACZ53058.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927512|gb|ACZ53059.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927534|gb|ACZ53070.1| D-alanine-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|269927540|gb|ACZ53073.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927590|gb|ACZ53098.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927592|gb|ACZ53099.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927612|gb|ACZ53109.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927622|gb|ACZ53114.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927628|gb|ACZ53117.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927666|gb|ACZ53136.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|269927454|gb|ACZ53030.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927466|gb|ACZ53036.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927468|gb|ACZ53037.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927478|gb|ACZ53042.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927484|gb|ACZ53045.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927486|gb|ACZ53046.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927496|gb|ACZ53051.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927506|gb|ACZ53056.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927514|gb|ACZ53060.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927522|gb|ACZ53064.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927524|gb|ACZ53065.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927526|gb|ACZ53066.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927532|gb|ACZ53069.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927546|gb|ACZ53076.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927548|gb|ACZ53077.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927550|gb|ACZ53078.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927554|gb|ACZ53080.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927562|gb|ACZ53084.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927566|gb|ACZ53086.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927572|gb|ACZ53089.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927578|gb|ACZ53092.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927582|gb|ACZ53094.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927586|gb|ACZ53096.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927588|gb|ACZ53097.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927606|gb|ACZ53106.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927608|gb|ACZ53107.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927610|gb|ACZ53108.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927614|gb|ACZ53110.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927616|gb|ACZ53111.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927624|gb|ACZ53115.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927626|gb|ACZ53116.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927636|gb|ACZ53121.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927638|gb|ACZ53122.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927646|gb|ACZ53126.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927648|gb|ACZ53127.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927650|gb|ACZ53128.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927668|gb|ACZ53137.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927670|gb|ACZ53138.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927672|gb|ACZ53139.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927678|gb|ACZ53142.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927680|gb|ACZ53143.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|269927452|gb|ACZ53029.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927456|gb|ACZ53031.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927460|gb|ACZ53033.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608] gi|269927462|gb|ACZ53034.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927464|gb|ACZ53035.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927470|gb|ACZ53038.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927472|gb|ACZ53039.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927474|gb|ACZ53040.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927480|gb|ACZ53043.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927482|gb|ACZ53044.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927488|gb|ACZ53047.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927490|gb|ACZ53048.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927492|gb|ACZ53049.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927494|gb|ACZ53050.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927498|gb|ACZ53052.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927500|gb|ACZ53053.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608] gi|269927502|gb|ACZ53054.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927504|gb|ACZ53055.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927516|gb|ACZ53061.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927518|gb|ACZ53062.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927520|gb|ACZ53063.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927528|gb|ACZ53067.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927530|gb|ACZ53068.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927536|gb|ACZ53071.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927538|gb|ACZ53072.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927542|gb|ACZ53074.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927544|gb|ACZ53075.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927552|gb|ACZ53079.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927556|gb|ACZ53081.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927558|gb|ACZ53082.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927560|gb|ACZ53083.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927564|gb|ACZ53085.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927568|gb|ACZ53087.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927570|gb|ACZ53088.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927574|gb|ACZ53090.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927576|gb|ACZ53091.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927580|gb|ACZ53093.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927584|gb|ACZ53095.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927594|gb|ACZ53100.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927596|gb|ACZ53101.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927598|gb|ACZ53102.1| D-alanine-D-alanine ligase [Lactobacillus reuteri lpuph] gi|269927600|gb|ACZ53103.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927604|gb|ACZ53105.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927618|gb|ACZ53112.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927630|gb|ACZ53118.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927632|gb|ACZ53119.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927634|gb|ACZ53120.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927640|gb|ACZ53123.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927642|gb|ACZ53124.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927644|gb|ACZ53125.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927652|gb|ACZ53129.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927654|gb|ACZ53130.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927656|gb|ACZ53131.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927658|gb|ACZ53132.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927662|gb|ACZ53134.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927674|gb|ACZ53140.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927676|gb|ACZ53141.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] gi|269927682|gb|ACZ53144.1| D-alanine-D-alanine ligase [Lactobacillus reuteri] Length = 210 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%) Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +KP K GSS+GI + + L + +++ + + + + Sbjct: 53 FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112 Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 AV + + LP K+P + E+ +A A++A+G +G++ Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 R DFL D + + E N PG T +S++P+M +G Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210 >gi|480501|pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp. (PCC 6716) (fragment) gi|49229|emb|CAA49884.1| unnamed protein product [Synechococcus sp.] Length = 218 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 37/191 (19%) Query: 1 MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLVLAH-------- 48 + +L GG S E EVS+ S A A A L ++V I + + Sbjct: 6 VGLLFGGRSREHEVSVVSAAAIAQAFADPLNGDRYEVVPIYIQKDGRWRCTETVSAPAPS 65 Query: 49 -------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 D+ F +LHG GEDG +Q +LE+++ PY SG+ ASA+ MDK+ Sbjct: 66 LDNQSLWSFPAVAETIDVWFPILHGPNGEDGTIQGLLEMMQRPYVGSGVAASAIGMDKIL 125 Query: 96 SKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 K + G+P + + + + P +KP GSS+GI Sbjct: 126 MKTFFGAVGLPQVQYVAISRSELWSDPCRYRQVCDRIETELGYPCFVKPANLGSSVGISK 185 Query: 144 IKKDQSIPLDL 154 K Q + L Sbjct: 186 AKNRQQLTTAL 196 >gi|167041454|gb|ABZ06205.1| putative D-ala D-ala ligase [uncultured marine microorganism HF4000_007D16] Length = 357 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 20/290 (6%) Query: 22 CASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDG-----LVQAILELL 75 + L VS +++ + LA KPDL F+ G + LEL Sbjct: 68 ILNILSKRYRNVSITEINTENDLKKLALRKPDLVFS---GVKYFYFDSGIIWLNDYLELY 124 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPL 133 +I Y S A DK +K+++ + ++ I P IKPL Sbjct: 125 DISYIASNREALHNEHDKSIAKKIMQKANIKTADFFTTEPGEHLTEMSIPIAFPLFIKPL 184 Query: 134 KGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 GG S G+ + + L+E Y+ G E + ++ D S + Sbjct: 185 TGGDSRGVDKNSIVYDFLSFQAKVLDIKRKQNLRSLVETYLPGKEYSVSILQDNSNGNLK 244 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK------IPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + L+ + IY ++ L+ A +A+G + + R Sbjct: 245 AMPIEIVVDKNINGHCILDYDIKKNDQEKVIAVTDNKIYNQLSDLSKDAFKALGGKSLGR 304 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 D + + ++E N+ PG+ ++ G + +++L + + Sbjct: 305 IDIKMN-HNGVPHFIEANLMPGLRNGYLYRACLFNLGMGYEQMILTIADT 353 >gi|186474632|ref|YP_001863603.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] gi|184198591|gb|ACC76553.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815] Length = 357 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 123/332 (37%), Gaps = 42/332 (12%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGF----KVSQIDVDRSVGL--VLAHLKPD-- 52 +++ GG S+E SL S + + + + +DV+ V + A L D Sbjct: 7 ISIAFGGKSTEHRASLESFRHVIGEIHNDDSVEIEDIYYVDVEGRVAVTPFQAGLPVDSY 66 Query: 53 ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 N+L+GNFGEDG +Q + +P + +LA++L+M Sbjct: 67 VRDREYMPYWAALGRMVNAGTFVLNLLYGNFGEDGKIQGAAAIASVPGSFGPVLAASLAM 126 Query: 92 DKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143 K Q + + + L T V+KP G+SL Sbjct: 127 SKYHMNQYIASAHPVVQIPDTLLLRECDLPEASTRIFDRFHGMEIVVKPNSLGASLFTNR 186 Query: 144 IKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 D + + + + L+++YV G E + G + + AV + Sbjct: 187 YLVDPECIESIKTNLAEIFEYDANALVQRYVSGTEYSIGCLQKNETVMVLPAVRIETEGA 246 Query: 202 YELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + S I + + K + L+ +++ R + R DF+ P +F+ Sbjct: 247 FFGHEEKHRSGKANEIIIMEESPVVKSLGDLSIEIFKSVDFRNMCRFDFIVSPEE-AIFF 305 Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 LE N PG+ SIFP+M A + + E + Sbjct: 306 LEANTIPGLMRNSIFPKMLAASDITLGEAISQ 337 >gi|84387437|ref|ZP_00990456.1| D-ala D-ala ligase [Vibrio splendidus 12B01] gi|84377690|gb|EAP94554.1| D-ala D-ala ligase [Vibrio splendidus 12B01] Length = 384 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 55/342 (16%) Query: 1 MAVLMGGISSEREV--------SLSS-------GKACASALEDAGFKVSQIDV---DRSV 42 +AV+ GG S +V S S A+AL ++GF+ +DV D + Sbjct: 20 IAVIHGGDKS--QVGSYIFENLSPRSTKTYEPVAHDIANALRESGFE--LVDVLAEDIDL 75 Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVV 100 L K DL G G D + + LE+L +PY + + + +K K + Sbjct: 76 AKQLESKKIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEI 135 Query: 101 SSCGVPVCPSILVNRFTMDS---------QHLISPP--YVIKPLKGGSSLGIIVIKKDQS 149 + G+P P I + P +V+KP+ G +S+ + + + Sbjct: 136 KAAGIPTAPFITIGIDEDFDSESNQSALDDIARRFPQGFVVKPVSGRASIHVYPVFERSE 195 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------- 198 + ++ + ++IE Y+ G E V G+ + Sbjct: 196 L-KAVVNKVRNATNNIVMIEPYLSGREFVVAVAGEYVFKQGALTQSNQPLAFSVTERVLK 254 Query: 199 --FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + L A + E+ + ++ +G + + R D D Sbjct: 255 ADEPIFTSMDVKPITQDRLVAVNDQTLRTELAEIGQKIYRQLGLQTLVRVDLRMDDE-GS 313 Query: 257 VFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293 ++ LE N +P + + VS+ A G S+ +L+ +V Sbjct: 314 LYVLETNPKPDLKRPEGSKVSLVCHDLAREGMSYTDLIQSLV 355 >gi|225165015|ref|ZP_03727220.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2] gi|224800369|gb|EEG18760.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2] Length = 83 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 12/71 (16%) Query: 238 IGCRGISRSDFLFDPL------------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 R +R DF+ + ++ LEIN PGM S+ P A AG F Sbjct: 5 CQVRDYARVDFILCDTPASPLSACEQNGNNSLYLLEINTLPGMKETSLLPMSARCAGLDF 64 Query: 286 RELLLWMVEDA 296 L+ +V A Sbjct: 65 TALVRELVRPA 75 >gi|329667282|gb|AEB93230.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii DPC 6026] Length = 1062 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLQDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKGELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ ++ + + C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|227890076|ref|ZP_04007881.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii ATCC 33200] gi|227849520|gb|EEJ59606.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii ATCC 33200] Length = 1062 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ ++ + + C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|187235564|gb|ACD01995.1| putative D-alanine-D-alanine ligase [Clostridium septicum] Length = 211 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 8/216 (3%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114 LHG FGEDG VQ++L+ L+IPY+ L+SAL MDK +K+++ S + + V Sbjct: 1 ALHGKFGEDGTVQSVLQTLDIPYSGCEPLSSALCMDKDLTKRILKSNNIRTARWLNVRSV 60 Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 D + P IKP GGSS+ I K + + + + W ++++IE+++ Sbjct: 61 EEIDYDKIEEMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKW--DNEVMIEEFIK 118 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G E+TC V + PK+DF+ Y KYS + V+ ++ ++KEV+++A Sbjct: 119 GEEITCPVFKG-EMFPVIAIRPKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALD 176 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++A+ C SR D + R + LE+N PGMT Sbjct: 177 TYKALKCSVYSRIDMIVTE-DRTPYILELNTFPGMT 211 >gi|42519201|ref|NP_965131.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii NCC 533] gi|81667751|sp|Q74J34|CARB_LACJO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|41583488|gb|AAS09097.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii NCC 533] Length = 1062 Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ ++ + + C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|294101200|ref|YP_003553058.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] gi|293616180|gb|ADE56334.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261] Length = 350 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 27/298 (9%) Query: 26 LEDAGFKVSQIDV-------DRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAILELL 75 L G+ + +D+ + + + +P FN+ G E + ILE Sbjct: 46 LSSQGYSIYNLDIFPADLADPKHLVQRINEYQPLCVFNLFEGFGSEPWLEASFCEILEKN 105 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQHLISPPYVIKPLK 134 + +T + A L +DK Q + + G+PV L + T+ + IS P IKP + Sbjct: 106 NLTFTGNPSGALRLCIDKHTLHQQLKTAGIPVPLSYFLKGKETLGTLENISFPLFIKPCR 165 Query: 135 GGSSLGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 S+GI ++ + + + + +LI++++ G E + + Sbjct: 166 EDGSVGIDKKSLVFNEEELQESVTEKLAKFPDG-ILIQEFLSGPEYCVSFVDNGPFSPVG 224 Query: 192 IAVPKSDFYSYELKY--SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI--------GCR 241 + Y Y P ++ + GC+ Sbjct: 225 LWTLDYSRYPECPAYLSYDAKWNENSPEWNLWPEEIDLDYSLKETILHMASRAALVAGCK 284 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G R D +F ++IN P +T S G ++ +L++ +++ A Sbjct: 285 GYFRVDLR--ENQGHLFVMDINPNPALTRDSGMARQYMQKGKTYEQLVMKILQLAILN 340 >gi|327334539|gb|EGE76250.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1] Length = 139 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 32 IRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTATAMARVVQKELDFSGISRVDAIVDE 91 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 S + +LE PGMT S+ P AG E+ +V+D Sbjct: 92 -SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 133 >gi|15603370|ref|NP_246444.1| carbamoyl phosphate synthase large subunit [Pasteurella multocida subsp. multocida str. Pm70] gi|22095528|sp|Q9CKV0|CARB_PASMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|12721891|gb|AAK03589.1| CarB [Pasteurella multocida subsp. multocida str. Pm70] Length = 1068 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D D R+V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIEWRTVEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTLEEAWAAQSEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL +AGF+ + D D S L L + ++H G Sbjct: 582 ALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ + P + + Sbjct: 642 LKLANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P + ++ E++R A+G +G Sbjct: 762 CDGAEVVIGGIMQHIEQAGIHSG---DSACSLPPYSLSQEVQDEIRRQTAEMAFALGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861 >gi|289207884|ref|YP_003459950.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp. K90mix] gi|288943515|gb|ADC71214.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp. K90mix] Length = 1077 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVEWETVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +LE + + A ++ D+ K ++ G+ ++ Sbjct: 89 TMGGQTALNCALDLSREGVLEKYGVEMIGANEAAIDMAEDRDHFKAAMADIGLDTPTAML 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +Q+L+E+ Sbjct: 149 AHSWEEAQEIQPKIGFPVIIRPSFTLGGSGGGIAYNREEFEYIVKNGLDLSPVNQVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G + + D I + + + + Sbjct: 209 SALGWKEFEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLRKIGVETGGSNVQFAINPENGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 89/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + ++ + D D V V+ KP Sbjct: 582 VHAALAMREDKYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVETEKPVGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ ++ P + Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDSIDLAEDRERFQALLHKLGLKQPPNRTARSEEEAE 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + +++ + + + + S ++ +L+++++D IE+ Sbjct: 702 KLADEIGYPLVVRPSYVLGGRAMEIVRDREDLRSYMQNAVSVSNDAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + L++ + Sbjct: 762 DVDAICDGENVIIGGIMEHIEQAG---VHSGDSACSLPPFSLSLELQDAMVEQVRKMALG 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ + F ++ LE+N + T P ++ G ++ Sbjct: 819 LKVVGLMNTQFAI--KGDDIYVLEVNPRASRT----VPYVSKAVGRPLAKIAAR 866 >gi|6552726|gb|AAF16526.1|AF191301_2 ADP-forming, carbamate-phosphorylating [Medicago sativa] Length = 1072 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD+ Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +LE + + A ++ D+ Q + G+ + + Sbjct: 89 TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ + P +I+P G + + + ++LLI++ Sbjct: 149 VHTLEEAKEAPKEFGFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 96/294 (32%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59 +AL + G++ + D D S L + + ++H Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVHKEKPVGVIVQF 641 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + P V++P + ++ K+ + + + + +L++ + + IE+ Sbjct: 702 LAADKVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P D+ +++ + Sbjct: 762 DIDSVSDGKQVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + + K++ +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNTQLAY--QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAAR 866 >gi|314965741|gb|EFT09840.1| conserved domain protein [Propionibacterium acnes HL082PA2] gi|314982883|gb|EFT26975.1| conserved domain protein [Propionibacterium acnes HL110PA3] gi|315091192|gb|EFT63168.1| conserved domain protein [Propionibacterium acnes HL110PA4] gi|315094423|gb|EFT66399.1| conserved domain protein [Propionibacterium acnes HL060PA1] gi|327328919|gb|EGE70679.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1] Length = 123 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 16 IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 S + +LE PGMT S+ P AG E+ +V+D Sbjct: 76 -SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117 >gi|254787220|ref|YP_003074649.1| carbamoyl phosphate synthase large subunit [Teredinibacter turnerae T7901] gi|237686984|gb|ACR14248.1| carbamoyl-phosphate synthase, large subunit [Teredinibacter turnerae T7901] Length = 1073 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +LE + + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALELHANGVLEKFNVELIGATQDAIDKAEDRDRFDKAMKNIGLECARAKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + L+ + ++LLI++ Sbjct: 149 VHTMEEANEVPKEFGFPVIIRPSFTMGGSGGGIAYNWEEFEEICLRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFAVNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAAREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHKEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ + P + + Sbjct: 642 GGQTPLKLANALAAEGVPIIGTSPEAIDRAEDRERFQQMIHRLGLLQPPNAIVRSTEEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + P V++P + ++ + + ++ + +L++ + + IE+ Sbjct: 702 SVAKEVGYPLVVRPSYVLGGRAMEIVYTKSELANYMREAVQASEDAPVLLDHFLNNAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P D+ E++ Sbjct: 762 DIDAVSDGKDVVIGAIMQHIEQCG---VHSGDSACSLPPYSLPEDVQNEMREQVRKMAVE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + K++ +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNVQLAY--QDGKIYVIEVNPRGSRT----VPFVSKCIGVSLAKVAAR 866 >gi|268319404|ref|YP_003293060.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii FI9785] gi|262397779|emb|CAX66793.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii FI9785] Length = 1062 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGIIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ ++ + + C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEESLEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|325911955|ref|ZP_08174358.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners UPII 143-D] gi|325476257|gb|EGC79420.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners UPII 143-D] Length = 1055 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|309806001|ref|ZP_07700027.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 03V1-b] gi|308167604|gb|EFO69757.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 03V1-b] Length = 1055 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAIYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|290646|gb|AAA24785.1| vanB2 ORF [Enterococcus faecalis] Length = 210 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 10/213 (4%) Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG +Q + EL IPY I +SA MDK + + + G+ V ++++ Sbjct: 1 EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGA 60 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 ++ P +KP + GSS G+ + + + + + + ++LIEQ + G E+ C VMG Sbjct: 61 LTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMG 118 Query: 184 DASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + E + S N+ +PA IP++ VQ A ++ Sbjct: 119 NEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYR 178 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +GCRG++R D + E+N PG T Sbjct: 179 VLGCRGLARVDLFL-QEDGGIVLNEVNTLPGFT 210 >gi|311110631|ref|ZP_07712028.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri MV-22] gi|311065785|gb|EFQ46125.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri MV-22] Length = 889 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 404 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 463 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 464 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 523 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 524 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 583 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P D+ +++ + + C Sbjct: 584 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 640 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 641 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 687 Score = 36.4 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 5/150 (3%) Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 + + + + + LIE+ + G D + V + + Sbjct: 8 ICHSHEELAEIAKNGLELSPVTECLIEKSIAG-YKEIEFEVMRDHDDNAMIVCCMENFDP 66 Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 ++ + + Y+ ++ + +A+ G DP S +E+ Sbjct: 67 VGIHTGDSIVFSPSQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEV 126 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 N P ++ S + GY ++ + Sbjct: 127 N--PRVSRSS--ALASKATGYPIAKMAAKI 152 >gi|282851820|ref|ZP_06261183.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri 224-1] gi|282557062|gb|EFB62661.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri 224-1] Length = 1062 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P D+ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|116095308|gb|ABJ60460.1| carbamoyl-phosphate synthase large subunit [Lactobacillus gasseri ATCC 33323] Length = 1071 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 586 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 645 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 646 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 705 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 706 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 765 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P D+ +++ + + C Sbjct: 766 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 822 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 823 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 869 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 38 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 97 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 98 TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 157 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 158 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 217 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 218 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 276 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 277 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 332 Query: 291 WM 292 + Sbjct: 333 KI 334 >gi|162139889|ref|YP_814898.2| carbamoyl phosphate synthase large subunit [Lactobacillus gasseri ATCC 33323] gi|238853376|ref|ZP_04643755.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri 202-4] gi|238833948|gb|EEQ26206.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri 202-4] Length = 1062 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A + P + + + + Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P D+ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|51921843|gb|AAU14063.1| VanB [Enterococcus faecalis] Length = 271 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 43/271 (15%) Query: 25 ALEDAGFKVSQIDVDRSVGLVLAHL----------------------------------K 50 + F I + ++ L + Sbjct: 1 NINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFSPDRKTHGLLVMKEREYETRR 60 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D+AF VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V Sbjct: 61 IDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEF 120 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + ++ P +KP + GSS G+ + + + + ++ + ++LIEQ Sbjct: 121 QMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILIEQ 178 Query: 171 YVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDI 223 + G E+ C VMG+ + E + S N+ ++PA IP++ Sbjct: 179 AISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEE 238 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 VQ A ++ +GCRG++R D Sbjct: 239 RNRVQETAKKVYRVLGCRGLARVDLFLQEDG 269 >gi|22095501|sp|Q8RSS3|CARB_HALER RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|18958215|emb|CAD24315.1| carbamoylphosphate synthetase large subunit [Halomonas eurihalina] Length = 1076 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +LE + + A ++ D+ Q + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINMAEDRDLFDQAMKRIGLECPKAKV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G V + + ++ +LLI++ Sbjct: 149 AHSMDEAWQIQSELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQNMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVDPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 40/307 (13%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V + KP Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + A ++ + P + Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQHMVDKLGLKQPANATARSXEEAF 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ +L++ + IE+ Sbjct: 702 AKAEAIGYPXVVRPSYVLGGXAMEIVYDASELENYMTHAVKVSNDSPVLLDHFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P ++ E++ Sbjct: 762 DIDAVSDGHQVVIGGIMQHIEQAG---VHSGDSACALPPYSLPAEVQDEMRDQVKRMAVE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAA-YAGYSFRE- 287 +G +G+ + +++ +E+N P ++ S+ A AG S E Sbjct: 819 LGVKGLMNVQLAW--QDGEIYVIEVNPRASRTVPFVSKCVGTSLAQVAARCMAGISLAEQ 876 Query: 288 -LLLWMV 293 + +V Sbjct: 877 GFVEEIV 883 >gi|93005659|ref|YP_580096.1| carbamoyl-phosphate synthase, large subunit [Psychrobacter cryohalolentis K5] gi|92393337|gb|ABE74612.1| carbamoyl-phosphate synthase large subunit [Psychrobacter cryohalolentis K5] Length = 1112 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D ++V ++A +PD Sbjct: 57 SGAQACKALKEEGYRVILVNSNPATIMTDPTMADATYIEPITWQTVEQIIAKERPDAILP 116 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + +L + + ++ D+ + + G+ + Sbjct: 117 TMGGQTALNCALELDKHGVLTKYNCELIGATKDSIEMAEDRNLFDKAMKRIGLECPRAET 176 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +Q + P +I+P G + + + QLLI++ Sbjct: 177 AETMEEAFATQEKMGYPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPNHQLLIDE 236 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 237 SLIGWKEYEMEVVRDKNDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 296 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 297 LAVLREIGVETGGSNVQFGINPETGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 352 Query: 291 WM 292 + Sbjct: 353 KL 354 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ PD Sbjct: 613 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIENPDGVIVQF 672 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T + A ++ + + P + Sbjct: 673 GGQTPLKLARALEAAGVKIIGTSPDAIDRAEDRERFQHMIQQLNLVQPTNALATSLEDGL 732 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + ++ +L+++++D IE+ Sbjct: 733 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEDELRHYLRTAVQASNEAPVLLDRFLDDAIEV 792 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + ++ ++ + Sbjct: 793 DVDCVSDGTDVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSDELCDVMRAQTVAMAKE 849 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 850 LGVVGLMNVQFAV--KGETVYILEVNPRAART----VPFVSKCIGTSLAQIAAR 897 >gi|260914713|ref|ZP_05921178.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325] gi|260631217|gb|EEX49403.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325] Length = 1071 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + R+V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F + P +I+P G + + + +LLIEQ Sbjct: 149 CHTFDEAWAAQAEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPQNGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + ++H G Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPYGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ + + P + + Sbjct: 642 LKLANDLYANGVNIIGTSADSIDAAEDRERFQQILHKLNLKQPTNRTARNAEEAVKLAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ + + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVEELKRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + P + ++ E++R A+G +G Sbjct: 762 CDGEDVVIGGIMQHIEQAGIHSG---DSACSLPPYSLSQEVQDEIRRQTADMAFALGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861 >gi|192362421|ref|YP_001983145.1| carbamoyl phosphate synthase large subunit [Cellvibrio japonicus Ueda107] gi|190688586|gb|ACE86264.1| carbamoyl-phosphate synthase, large subunit [Cellvibrio japonicus Ueda107] Length = 1072 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD+ Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +LE + + A + D+ Q + G+ + Sbjct: 89 TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINKAEDRNLFDQAMKRIGLECARARI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 VHSMEEAKEVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFAVNPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 94/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVHKEKPAGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEAEGVPIIGTSPDAIDKAEDRERFQQMIEKLGLLQPPNAIVRSLEEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + P V++P + ++ K+ + + + + +L++ + + IE+ Sbjct: 702 VAADQVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P D+ +++ + Sbjct: 762 DIDSVSDGKQVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPADVQDDMREIVKKMAIE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + + K++ +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNTQLAY--QDGKIYVIEVNPRASRT----VPFVSKCIGISLAKVAAR 866 >gi|315105144|gb|EFT77120.1| conserved domain protein [Propionibacterium acnes HL050PA2] Length = 123 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 16 IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 S + +LE PGMT +S+ P AG E+ +V+D Sbjct: 76 -SGRPVFLEAGAAPGMTAISLVPVAMKAAGLDLGEVCSRLVDD 117 >gi|300113563|ref|YP_003760138.1| hypothetical protein Nwat_0871 [Nitrosococcus watsonii C-113] gi|299539500|gb|ADJ27817.1| conserved hypothetical protein [Nitrosococcus watsonii C-113] Length = 364 Score = 73.4 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 111/307 (36%), Gaps = 31/307 (10%) Query: 23 ASALEDAG--------FKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQA 70 A++ A ++ + +D ++ L P+ N ++ + A Sbjct: 36 LEAIDRAKEALGELSDYQFTYLDNHSALLPQLIANPPNFVLNFCDTGYKNQAQQELHIPA 95 Query: 71 ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130 +LE+L IPY+ +G L DK + V + GVPV V+ ++ L P +I Sbjct: 96 LLEMLGIPYSGAGPTCLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKDFPALI 155 Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------- 179 KP +G S ++ + + + + LLI++++ G E + Sbjct: 156 KPNRGDGSVGITENSLVYDEPQAHAYINKLAMEFPSCDLLIQEFLPGDEYSVGLLGNPSS 215 Query: 180 ---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + A +Y K + I + +++ + Sbjct: 216 GFKILPILKVDYSRLAAHRLPPILAYASKVDPASPYWTDIKYGKAAIDEGLRQRLVGYCR 275 Query: 237 ----AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +GCR +R DF D +V LE+N P M +AGY + ELL W+ Sbjct: 276 LLFERLGCRDYARFDFRADAQ-GEVKLLEVNPNPAWCWDGKLNLMVGFAGYRYGELLEWI 334 Query: 293 VEDASCL 299 ++ A Sbjct: 335 LQAAQAR 341 >gi|92115200|ref|YP_575128.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter salexigens DSM 3043] gi|91798290|gb|ABE60429.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter salexigens DSM 3043] Length = 1076 Score = 73.0 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQAVAKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +LE + + A + D+ + + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLETYGVEMIGANAAAINKAEDRDLFDKAMKNIGLECPKAKV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G V + + ++ +LLI++ Sbjct: 149 AHRMSEAWEIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 87/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + GF+ + D D V + KP Sbjct: 582 VHAALAMREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + A ++ + P + Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAF 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 I P V++P + ++ + + + ++ +L++ +++ IE+ Sbjct: 702 AKAEKIGYPLVVRPSYVLGGRAMEIVYDAAELEGYMTHAVKVSNDSPVLLDHFLNAAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P + E++ Sbjct: 762 DIDAVSDGEQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLPAHVQDEMRDQVKRMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ + +++ +E+N + T P ++ G S ++ Sbjct: 819 LNVVGLMNVQLAW--QDDEIYVIEVNPRASRT----VPFVSKCIGTSLAQVAAR 866 >gi|328463870|gb|EGF35401.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462] Length = 92 Score = 73.0 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +++ ++ ++ +G + R DF + V+ +E N PGMTP+S+ P+ A G Sbjct: 2 VHQAMKDVSLQTMDVLGLQNYGRIDFF--ANDKGVWVIEANNLPGMTPLSLLPQEAEADG 59 Query: 283 YSFRELLLWMVE 294 + +L++ ++ Sbjct: 60 VEYGDLVMDIIN 71 >gi|309805595|ref|ZP_07699638.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 09V1-c] gi|308165096|gb|EFO67336.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 09V1-c] Length = 1055 Score = 73.0 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELQEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|254456005|ref|ZP_05069434.1| carbamoyl-phosphate synthase, large subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083007|gb|EDZ60433.1| carbamoyl-phosphate synthase, large subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 1074 Score = 73.0 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 101/302 (33%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G+KV I D D + +L KPD Sbjct: 29 SGTQACKALRDEGYKVVLINSNPATIMTDPDVADKTYIEPITLEVLEKILKKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++A L+ +I + A + + D+ + ++ + G+ + S + Sbjct: 89 TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMIDIGLDLPKSEI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 VN S+ + I P +I+P LG + K + + + Q+L+E+ Sbjct: 149 VNNINQASKVLNKIGLPAIIRPAFTLGGLGGGIAKNKKDYLKIIKNGLHESPVSQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D I + + + + Sbjct: 209 CLEGWKEFEMEVIRDKKDNCIIICSIENIDPMGIHTGDSVTVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVETGGSNVQFAINPKNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 99/326 (30%), Gaps = 51/326 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC------ASA---LEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A L+DAGF+ + D D S Sbjct: 561 IIILGGGPN-------RIGQGIEFDYCCCQAAFSLKDAGFETIMVNCNPETVSTDYDTSD 613 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L LK + FN++ G L I T + Sbjct: 614 RLYFEPLKEEYVFNIIKKEKEKGNLIGVIAQFGGQTPIKLAKFLNDNKLPILGTQYTSID 673 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ R + + I P +++P + ++ + Sbjct: 674 LAEDRDRFRDLLNKLKLKQAESGIAKTFKQAIQIAEKIGLPLMVRPSYVLGGRAMEIVHE 733 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + +LI++++D +E+ + D + + Sbjct: 734 KSQLKNFVEEAFKAAEENPILIDKFIDHAMEVDVDAISDGKQVHVAGIMQHIEEAGIHSG 793 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P I + KE++ A+ +G F +++ +E+N + Sbjct: 794 ---DSACSLPPVSIKPYLIKEIENQTKKLALALKVKGFMNIQFAI--KKDEIYVIEVNPR 848 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 849 ASRT----VPFVSKAKGLPLAKIASR 870 >gi|219685886|ref|ZP_03540692.1| D-alanine--D-alanine ligase [Borrelia garinii Far04] gi|219672585|gb|EED29618.1| D-alanine--D-alanine ligase [Borrelia garinii Far04] Length = 287 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 44/219 (20%) Query: 3 VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46 ++ GG+S E E+S S + AL D + + + +D+ + L Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66 Query: 47 -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 +L+ D+ F V+HG GEDG +Q +L++++IP +GI+ SA+ Sbjct: 67 VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140 S +K K ++ S +P+ P I + + + + P ++KP GSS+G Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I V ++ + + +LIE++++ E+ C Sbjct: 187 INVAYS--ESQIEFFIEEALKYDLTILIEKFIEAREIEC 223 >gi|121998283|ref|YP_001003070.1| hypothetical protein Hhal_1501 [Halorhodospira halophila SL1] gi|121589688|gb|ABM62268.1| conserved hypothetical protein [Halorhodospira halophila SL1] Length = 348 Score = 73.0 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 23/298 (7%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAILEL 74 + +AL G + D + L P+LA N+ + + A+LEL Sbjct: 39 ARRVLAALP--GVTLRVFDDHERLIDDLRADPPELAVNLCDNGYCNRLELEANIPALLEL 96 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 EIPYT +G A LS DK + + +S GV V ++ P VIKP Sbjct: 97 FEIPYTGTGGAAMGLSRDKAAVRALAASLGVAVPEERTIDLSDPTPALPERYPAVIKPND 156 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCGVMGDASL----- 187 G S+G+ + + ++Y+ G E T G++G+ + Sbjct: 157 GCGSIGMEPDCVVEDAHQAQAYLRRLAGSGAAWVLAQEYLPGAEYTVGLVGNPATGLLVL 216 Query: 188 -----DVTEIAVPKSDFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAI 238 D T + SY K + + PA++ + ++ A + Sbjct: 217 PALVVDYTALPPELPPILSYGSKVDPASPYYQALRFAPAQLSEEKRSAMEVAARRLFARV 276 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G R +R DF D L+ N P P MA YAGYS+ +LL +V A Sbjct: 277 GARDYARVDFREDLR-GVPRLLDFNNHPSWGPDGKLAMMAGYAGYSYADLLERIVRAA 333 >gi|71065374|ref|YP_264101.1| carbamoyl-phosphate synthase large subunit [Psychrobacter arcticus 273-4] gi|71038359|gb|AAZ18667.1| carbamoyl-phosphate synthase large subunit [Psychrobacter arcticus 273-4] Length = 1084 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + +L + + ++ D+ + + G+ + Sbjct: 89 TMGGQTALNCALELDKHGVLTKYNCELIGATKDSIEMAEDRNLFDKAMKRIGLECPRAET 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +Q + P +I+P G + + + QLLI++ Sbjct: 149 AETMEEAFATQEKMGYPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPNHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ PD Sbjct: 585 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIENPDGVIVQF 644 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T + A ++ + + P + Sbjct: 645 GGQTPLKLARALEAAGVKIIGTSPDAIDRAEDRERFQHMIQQLNLVQPTNALATSLEDGL 704 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + ++ +L+++++D IE+ Sbjct: 705 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEDELRHYLRTAVQASNEAPVLLDRFLDDAIEV 764 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + ++ ++ + Sbjct: 765 DVDCVSDGTDVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSKELCDVMRAQTVAMAKE 821 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 822 LGVVGLMNVQFAV--KGETVYILEVNPRAART----VPFVSKCIGTSLAQIAAR 869 >gi|253755099|ref|YP_003028239.1| D-alanine--D-alanine ligase [Streptococcus suis BM407] gi|251817563|emb|CAZ55310.1| putative D-alanine--D-alanine ligase [Streptococcus suis BM407] Length = 316 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 105/285 (36%), Gaps = 19/285 (6%) Query: 23 ASALEDAGF-----KVSQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELL 75 + F +V+ D + + D N + + + V A E Sbjct: 30 LKNILKENFSKFVKEVTFYDNFEHFKINVQKHHNDFVLNFDFGYKSRTRNMNVPAFCENY 89 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133 I Y + L DK +++ + GV V S + + + + ++ P +IKP Sbjct: 90 NIKYFNPDPYVQVLCQDKFMTEKFAENFGVTVPNSLLVFKHSYQKNLLKDLNYPLIIKPN 149 Query: 134 KGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASL 187 S+GI +++ + + G +L+E+Y++G E+ + + Sbjct: 150 YESESIGITQDSIVENPGDADTIIGKLFKEFDG--ILVEEYIEGKEVAITIWDNGEEIFF 207 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + E+ P+ + Y+ S + + K + + ++ + + R D Sbjct: 208 EEVELIFPRLEEIKYQAYTSEIKQKIGIEIKKSCYLSDKDIINLKQLYKNLSPNKLIRID 267 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + K + +EIN PG+ P S+ P+ GY + +L + Sbjct: 268 GRI--KNSKFYLIEINANPGLYPKSVVPKTFLINGYDYETMLKKL 310 >gi|326796870|ref|YP_004314690.1| carbamoyl-phosphate synthase, large subunit [Marinomonas mediterranea MMB-1] gi|326547634|gb|ADZ92854.1| carbamoyl-phosphate synthase, large subunit [Marinomonas mediterranea MMB-1] Length = 1071 Score = 72.6 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GF+V + D ++V ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPSMADATYIEPIEWKTVEKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE ++ + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLEKFDVEMIGATADAIDKAEDRHRFDEAMKAIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEALKVQSEVNFPCIIRPSFTMGGTGGGIAYNMEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + GF+ + D D V ++ KP Sbjct: 582 VHAALGLREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ +S P ++ + Sbjct: 642 GGQTPLKIARALQNEGVPIIGTTPEAIDRAEDRERFQSMIQRLGYKQPNNATVRSTEQAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 I P V++P + ++ + + + + ++ +L++ ++ IE+ Sbjct: 702 VKAAEIGYPLVVRPSYVLGGRAMEIVYNEAELSRYMTTAVKVSNDSPVLLDHFLKAAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P DI E++ + Sbjct: 762 DIDCVSDGKQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLPADIQDEIRSMIKSMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + ++F +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNTQLAV--QDGEIFVIEVNPRASRT----VPFVSKCIGRSLAQI 863 >gi|312870725|ref|ZP_07730832.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 3008A-a] gi|311093737|gb|EFQ52074.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 3008A-a] Length = 1055 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNSEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|325913772|ref|ZP_08176133.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners UPII 60-B] gi|325476972|gb|EGC80123.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners UPII 60-B] Length = 1055 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|315653073|ref|ZP_07906001.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195] gi|315489608|gb|EFU79242.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195] Length = 1063 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 642 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 643 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 702 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 703 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 763 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 820 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 37 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 96 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 97 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 156 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 157 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 217 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 275 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 276 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 331 Query: 291 WM 292 + Sbjct: 332 KI 333 >gi|312875183|ref|ZP_07735196.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2053A-b] gi|311089290|gb|EFQ47721.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2053A-b] Length = 1055 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELAAVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|309803567|ref|ZP_07697659.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 11V1-d] gi|308164315|gb|EFO66570.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 11V1-d] Length = 1055 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|314922658|gb|EFS86489.1| conserved domain protein [Propionibacterium acnes HL001PA1] Length = 123 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P Y Y Y+ + PA I + +A + + + GISR D + D Sbjct: 16 IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 S + LE PGMT S+ P AG E+ +V+D Sbjct: 76 -SGRPVLLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117 >gi|309807411|ref|ZP_07701374.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 01V1-a] gi|308169333|gb|EFO71388.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LactinV 01V1-a] Length = 1055 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAIYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|330982516|gb|EGH80619.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 97 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 +A++ GG SSE EVSL S + +A++ + ++ I VD+ L + D N Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60 >gi|330937587|gb|EGH41525.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. pisi str. 1704B] Length = 97 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 +A++ GG SSE EVSL S + +A++ + ++ I VD+ L + D N Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60 >gi|289676715|ref|ZP_06497605.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae FF5] Length = 97 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57 +A++ GG SSE EVSL S + +A++ + ++ I VD+ L + D N Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60 >gi|47569514|ref|ZP_00240194.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241] gi|47553843|gb|EAL12214.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241] Length = 1072 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109 L G G + + + + + IL + L D RS + +P Sbjct: 89 TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQELNEPIPSST 147 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I + I P +++P G + ++ + + + Q L+E Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S D + + + + Y+ ++ Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|115384442|ref|XP_001208768.1| predicted protein [Aspergillus terreus NIH2624] gi|114196460|gb|EAU38160.1| predicted protein [Aspergillus terreus NIH2624] Length = 292 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTP-VSIFPEMA 278 D V ++A A++ +GCR R D F P + +E+N G+ P S++ +A Sbjct: 203 DQMARVSQVALDAYKGLGCRDAGRVDVRFGPDGDGSNPYVIEVNPIFGLNPNHSLYTWIA 262 Query: 279 AYAGYSFRELLLWMVEDA 296 G S+ +LL ++E+A Sbjct: 263 KNNGLSYTDLLQNIIENA 280 >gi|218899040|ref|YP_002447451.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842] gi|226700919|sp|B7IUP6|CARB_BACC2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|218541911|gb|ACK94305.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842] Length = 1072 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109 L G G + + + + + IL + L D R+ + +P Sbjct: 89 TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPIPSST 147 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I + I P +++P G + ++ + + + Q L+E Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S D + + + + Y+ ++ Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|168699143|ref|ZP_02731420.1| D-ala D-ala ligase domain protein [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 113/315 (35%), Gaps = 28/315 (8%) Query: 10 SEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHG---NFG 63 SE ++ + L AGF +++ ++ + L +P FN+ G Sbjct: 24 SEHDI-YDTVGDAYKVLVAAGFVTTKLGINHDPQPLLDALKRDRPAAVFNLFEGIATQTS 82 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + A+LE L +P+T A AL DK+R+K V+++ GVP ++V+ + + Sbjct: 83 TEVSAAALLEWLNVPFTGCPAAALALGRDKVRTKHVLAASGVPTPDYLIVDTLPVPTWCH 142 Query: 124 ISPPYVIKPLKGGS-SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P V + S + + Q + + +G ++E+Y+ G EL V+ Sbjct: 143 GWPAIVKPAYQDASVGIEQSSVVTSQEQLQAQVAHTLATYGPPAIVERYIKGRELHVNVI 202 Query: 183 GDASLDVTEIA------------VPKSDFYSYELKYSSLNSTHV------LPAKIPLDIY 224 E P S P +P + Sbjct: 203 EPFGATGGEPVALAPTEIAFQKDEPGRWAVYTFAAKWHEQSDEYKAASLKFPVDLPAADF 262 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + ++ + + +GCR +R D D LE+N P + +++ + G S Sbjct: 263 ARLAQIVQRSFRVVGCRDYARVDVRMDA-GGAFHVLEVNPNPYLNSITLV-DGLKARGSS 320 Query: 285 FRELLLWMVEDASCL 299 + ++ + A Sbjct: 321 YERFVVELTLAALAR 335 >gi|329919624|ref|ZP_08276613.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners SPIN 1401G] gi|328937429|gb|EGG33851.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners SPIN 1401G] Length = 1055 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|312872851|ref|ZP_07732913.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091585|gb|EFQ49967.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2062A-h1] Length = 1055 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIICCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|312873764|ref|ZP_07733809.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2052A-d] gi|311090762|gb|EFQ49161.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners LEAF 2052A-d] Length = 1055 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|309809683|ref|ZP_07703539.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners SPIN 2503V10-D] gi|308170043|gb|EFO72080.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners SPIN 2503V10-D] Length = 1055 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G +P S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|302190954|ref|ZP_07267208.1| carbamoyl phosphate synthase large subunit [Lactobacillus iners AB-1] Length = 1055 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 29 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 89 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G + S +E+N P ++ S + GY ++ Sbjct: 268 SLNLIRALKIEGGCNVQLALNTNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|259501322|ref|ZP_05744224.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335] gi|259167292|gb|EEW51787.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335] Length = 1063 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G+K I+ + V ++ KP+ ++ Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 642 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + A L+ + + + + D+ QV+ + G+ + + + Sbjct: 643 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 702 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 D+ I P +++P + ++ + + L ++ + +L++ Y+DG E Sbjct: 703 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S + P DI +++ + A+ Sbjct: 763 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 C+GI F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 820 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++ ++ PD Sbjct: 37 SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 96 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + IL+ L I + + + + D+ K++ VP + Sbjct: 97 TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 156 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + + LIE+ Sbjct: 157 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 217 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 275 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G + S +E+N P ++ S + GY ++ Sbjct: 276 SLNLIRALKIEGGCNVQLALNTNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 331 Query: 291 WM 292 + Sbjct: 332 KI 333 >gi|2231987|gb|AAB62175.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 43/269 (15%) Query: 30 GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55 F I + ++ L + D+AF Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFSPDRKTHGLLVMKEREYETRRIDVAF 60 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V ++ + Sbjct: 61 PVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEK 120 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ P +KP + GSS G+ + + + + ++ + ++LIEQ + G Sbjct: 121 GDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILIEQAISGC 178 Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ C VMG+ + E + S N+ ++PA IP++ VQ Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQ 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 A ++ +GCRG++R D V Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >gi|307546738|ref|YP_003899217.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM 2581] gi|307218762|emb|CBV44032.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM 2581] Length = 1076 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +LE + + A + D+ Q + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINKAEDRDLFDQAMKRIGLECPKAKV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G V + + ++ +LLI++ Sbjct: 149 AHSMDEAWQIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQNMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVDPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V + KP Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + A ++ + P + Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAF 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 I P V++P + ++ + + + ++ +L++ +++ IE+ Sbjct: 702 AKAEAIGYPLVVRPSYVLGGRAMEIVYDATELENYMTHAVKVSNDSPVLLDHFLNAAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P D+ E++ Sbjct: 762 DIDAVSDGRQVVIGGIMQHIEQAG---VHSGDSACALPPYSLPADVQDEMRDQVKRMAVE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G +G+ + +++ +E+N + T P ++ G S ++ Sbjct: 819 LGVKGLMNVQLAW--QDGEIYVIEVNPRASRT----VPFVSKCVGTSLAQIAAR 866 >gi|225849501|ref|YP_002729666.1| carbamoyl-phosphate synthase large chain, N- section (carbamoyl-phosphate synthetase ammonia chain) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644401|gb|ACN99451.1| carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) [Sulfurihydrogenibium azorense Az-Fu1] Length = 559 Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + + ++ +PD Sbjct: 29 SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADRTYIEPLITPVLEKIIEKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + IL+ + + + D+ K+ + + G+ + S Sbjct: 89 TLGGQTALNLAIELYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + ++L+E+ Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNREEFYPKVKAGLDASPIHEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITIAPAMTLSDREYQILRNYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|328774412|gb|EGF84449.1| hypothetical protein BATDEDRAFT_34316 [Batrachochytrium dendrobatidis JAM81] Length = 790 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 101/319 (31%), Gaps = 44/319 (13%) Query: 20 KACASALEDAGF---KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAIL 72 K AL D G+ ++ ID + + L+ N + D + A+L Sbjct: 461 KQLVKALYDIGYSDEQLEIIDTHKDLVHTLSEKSVSFVLNFCDEGYQNDALKEMHIPALL 520 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------- 121 ++ I Y+ +G + DK + GVP + S Sbjct: 521 DMANIQYSGAGPNCLTICYDKGLVNSTARTLGVPTPREMTYLSDVATSAVADLNKVDQLI 580 Query: 122 -HLISPPYVIKPLKGG---SSLGIIVIKKDQSIPLDL-------------LQSSSWNHGD 164 I P IKP+KG +I + + + + Sbjct: 581 REQILYPAFIKPIKGDNSLGITSRSIIHNKAELASYMDELSGIGIRDVLVQEYLTGTEYG 640 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++ G + D S V + P ++ + + A + ++ Sbjct: 641 IGMVGNSETGFHFFPTLKVDYSKIVEKQLEPILGYESKWDPSSPYWSDISYVAANLSAEV 700 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFL--------FDPLSRKVFWLEINVQPGMTPVSIFP 275 ++++ + + GCR +R DF D L + LE+N PG Sbjct: 701 DNDLRKACVVLWKRFGCRDYARFDFRSDVGTGDNKDGLGGTIKLLEVNPNPGWCWDGKLA 760 Query: 276 EMAAYAGYSFRELLLWMVE 294 MA G ++++L +++ Sbjct: 761 YMAKLDGIEYKDMLRMIIQ 779 >gi|239994554|ref|ZP_04715078.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii ATCC 27126] Length = 1071 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L E G A A+ + R + + + + Sbjct: 89 TMGGQTALNCALELDKHGVLEEFGCELIGATADAIDKAENRERFDKAMKNIGLECPRAEI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +MD H I P +I+P G + + + ++LLI++ Sbjct: 149 AHSMDEAHDVLSRIGFPCIIRPSFTMGGTGGGIAYNIDEFNEICHRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQLMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVDPKTGRVVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 94/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A +P Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + T + A ++ + + P ++ + Sbjct: 642 GGQTPLKLARALEAAGVPVIGTSPEAIDRAEDRERFQQMVNKLNLKQPANATVTNVEQAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ + + L ++ ++ +L+++++D IE+ Sbjct: 702 TMAEEIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNEAVKVSNDAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + +I ++ Sbjct: 762 DIDAICDGKDVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSKEIQDVMREQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +V+ +E+N + T P ++ G ++ Sbjct: 819 LGVVGLMNTQFAI--KDGEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|83771332|dbj|BAE61464.1| unnamed protein product [Aspergillus oryzae] Length = 220 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 30/208 (14%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 M Q L S P IKP GSS GI + + + + G +LIE ++ G Sbjct: 1 MHGQKLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRFPGASILIETFLSG 60 Query: 175 IELTCGVMGDASLDVTEIAVPKSD----------------FYSYELKYSSLNSTHVLPAK 218 E T ++G + + P Sbjct: 61 QEYTVSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDGSFWDVNNKNGPDA 120 Query: 219 IPLDIYKEVQRL---------AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + + A A +A+ C + R D + + + LEIN PG+ Sbjct: 121 DEPERFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GADNRPYVLEINPLPGLR 179 Query: 270 P-VSIFPEMAAYAGYSFRELLLWMVEDA 296 P SI A + G S +EL+ +++ A Sbjct: 180 PDWSILARTAVHEGISHKELIGKVIDSA 207 >gi|325126580|gb|ADY85910.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1062 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V +P+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A ++ P + + M + Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L + +L++ Y+DG E + Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ +++ + A+ C+G Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--RDGNVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + LIE+ Sbjct: 149 VKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|183601001|ref|ZP_02962494.1| hypothetical protein PROSTU_04617 [Providencia stuartii ATCC 25827] gi|188019334|gb|EDU57374.1| hypothetical protein PROSTU_04617 [Providencia stuartii ATCC 25827] Length = 1073 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEAYAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P +++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVVTIEQAVEKASG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGLPLAKIAAR 867 >gi|206971153|ref|ZP_03232104.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH1134] gi|206733925|gb|EDZ51096.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH1134] Length = 1072 Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109 L G G + + + + + IL + L D RS + +P Sbjct: 89 TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQELNEPIPSST 147 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I + I P +++P G + ++ + + + Q L+E Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S D + + + + Y+ ++ Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|261346436|ref|ZP_05974080.1| carbamoyl-phosphate synthase, large subunit [Providencia rustigianii DSM 4541] gi|282565419|gb|EFB70954.1| carbamoyl-phosphate synthase, large subunit [Providencia rustigianii DSM 4541] Length = 1073 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEAYAVADDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLNLKQPKNATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + + +I ++ + RG Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|268610484|ref|ZP_06144211.1| carbamoyl phosphate synthase large subunit [Ruminococcus flavefaciens FD-1] Length = 1073 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 95/306 (31%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALRQLGYEIVLVNSNPATIMTDPDVADITYIEPLNLERLTQIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K +S G+ + S Sbjct: 89 NLGGQSGLNLCSELDQAGVLKKYNVQVIGVQVDAIERGEDRIEFKNAMSELGIGMPKSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYTVDEAVKIAEKLRYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + + + +P + ++ + Sbjct: 209 CIFGWEELELEVVRDAENNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++ ++I G F DP + ++ +EIN + T S + G+ Sbjct: 268 ---SYKIIESIEVIGGCNCQFARDPETGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSAML 325 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 90/298 (30%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A D R+ +P + + + Sbjct: 642 LNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNADEAIAIANK 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ D+ + + + + +LI+++++ Sbjct: 702 IGYPVMVRPSYVLGGRGMEIVHDDEMMRVYMNAAVGVTPDRPILIDRFLN---HATECEA 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRG 242 DA D T VP + S +S +LPAK D ++ + G Sbjct: 759 DAISDGTNCFVPCVMEHIELAGVHSGDSACILPAKNLTDKQVATIKEYTKKIAVEMNVCG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + V+ LE N + T P ++ + + ++ + R Sbjct: 819 LMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCDINMVRIATDIITSSLTGR 870 >gi|161508239|ref|YP_001577721.1| carbamoyl phosphate synthase large subunit [Lactobacillus helveticus DPC 4571] gi|172048328|sp|A8YVZ3|CARB_LACH4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|160349228|gb|ABX27902.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus helveticus DPC 4571] Length = 1062 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V +P+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A ++ P + + M + Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L + +L++ Y+DG E + Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ +++ + A+ C+G Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + LIE+ Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|111610238|gb|ABH11616.1| pyrimidine-specific carbamoyl-phosphate synthase large chain [Lactobacillus helveticus CNRZ32] Length = 1062 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V +P+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A ++ P + + M + Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L + +L++ Y+DG E + Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ +++ + A+ C+G Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + LIE+ Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|116514876|ref|YP_813782.1| carbamoyl phosphate synthase large subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274392|sp|Q047M8|CARB_LACDB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116094191|gb|ABJ59344.1| carbamoyl-phosphate synthase large subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1062 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V +P+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A ++ P + + M + Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L + +L++ Y+DG E + Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ +++ + A+ C+G Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ V+ +E+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + LIE+ Sbjct: 149 VKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|268592107|ref|ZP_06126328.1| carbamoyl-phosphate synthase, large subunit [Providencia rettgeri DSM 1131] gi|291312503|gb|EFE52956.1| carbamoyl-phosphate synthase, large subunit [Providencia rettgeri DSM 1131] Length = 1073 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEAFAVADAVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ + Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVTAIEQAVEKAAV 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|326941656|gb|AEA17552.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 1072 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 96/303 (31%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCP 109 L G G + + + + + IL + LS + + + + +P Sbjct: 89 TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPIPSST 147 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I + I P +++P G + ++ + + + Q L+E Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S D + + + + Y+ ++ Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|212709135|ref|ZP_03317263.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM 30120] gi|212688047|gb|EEB47575.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM 30120] Length = 1073 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEANAVADDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + + +I ++ + RG Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVRSLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVQLAKVAAR 867 >gi|149375766|ref|ZP_01893534.1| Carbamoylphosphate synthase large subunit [Marinobacter algicola DG893] gi|149359891|gb|EDM48347.1| Carbamoylphosphate synthase large subunit [Marinobacter algicola DG893] Length = 1071 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWKTVAKIIEKEQPDALLP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + +E+ ++ + A D+ P Sbjct: 89 TMGGQTALNCALDLEKHGVLAEHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRATI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + ++LLI++ Sbjct: 149 AHSMAEAWEVANDIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVNPDNGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 104/322 (32%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42 + V+ GG + G+ +AL D G++ I D D S Sbjct: 561 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMRDDGYETIMINCNPETVSTDYDTSD 613 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L + + ++H G + I T + A Sbjct: 614 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + + I P V++P + ++ ++ + Sbjct: 674 RERFQQMIGRLGLIQPENATVRSHEEGILAAREIGYPLVVRPSYVLGGRAMEIVYDEEEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L++ +++ IE+ + D V + + +S Sbjct: 734 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGKDVVIGGIMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P +P D+ E++ + G+ + +++ +E+N + T Sbjct: 791 SACSLPPYTLPKDVQDEMREAVRKMAIELDVIGLMNVQLAW--QGGQIYVIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 849 ----VPFVSKAIGVSLAKVAAR 866 >gi|300724594|ref|YP_003713919.1| carbamoyl phosphate synthase large subunit [Xenorhabdus nematophila ATCC 19061] gi|297631136|emb|CBJ91827.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus nematophila ATCC 19061] Length = 1074 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L+ + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLDEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPTGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANVTVTTIEQAVEKGKA 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + +I +++ + RG Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGRPLAKVAAR 867 >gi|237745680|ref|ZP_04576160.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes HOxBLS] gi|229377031|gb|EEO27122.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes HOxBLS] Length = 1076 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTFIEPITWKVVERIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLYRNGVLEKYHVELIGASPEAIDKAEDRSKFKEAMTRIGLSSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D Q + P +I+P G + ++ + + +LLIE+ Sbjct: 149 AHTLDEAWDVQKKMGFPVIIRPSFTLGGTGGGIAYNEEEFDAICRRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVDTGGSNVQFAVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 103/319 (32%), Gaps = 51/319 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + VL GG + G+ A A+ + G++ + D+ Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDISD 608 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + + I T ++ +A Sbjct: 609 RLYFEPLTLEDVLEIVDKEKPYGVIVQYGGQTPLKLALDLEANGVPIVGTSPDMIDAAED 668 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + + P + M+ I P V++P + ++ + Sbjct: 669 RERFQKLLKELNLRQPPNRTARTEEEAMELAREIGYPIVVRPSYVLGGRAMEIVHDQTGL 728 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D IE+ + D + + + +S Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCISDGKRVLIGGVMEHIEQAG---VHSGD 785 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRK----VFWLEIN 263 ++ + P + + +E++R L + + G+ F + K VF LE+N Sbjct: 786 SACSLPPYSLSKETIEELKRQTTLMAKGLNVVGLMNVQFAIQHQEVDGKLQDVVFVLEVN 845 Query: 264 VQPGMTPVSIFPEMAAYAG 282 + T P ++ G Sbjct: 846 PRASRT----VPFVSKATG 860 >gi|323698354|ref|ZP_08110266.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp. ND132] gi|323458286|gb|EGB14151.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio desulfuricans ND132] Length = 1077 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++ +PD Sbjct: 29 SGTQALKALKEEGYEVVLVNSNPASIMTDPELADATYIEPIEPETVARIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + +L+ + + I + + ++ + + G+ + S + Sbjct: 89 TLGGQTGLNTALAVADMGVLDKFGVELIGANIDVINKAESREEFREAMRNIGLHMPESGI 148 Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G V + + + + ++++E+ Sbjct: 149 CHNMDDVREWGEKIPFPIIVRPAYTLGGSGGGVAYNMEELEQICANGLALSMKHEIMLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SILGWKEYELEVMRDKKDNCVIICSIENLDPMGVHTGDSVTVAPAQTLTDDEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVMREIGVETGGSNVQFAVNPEDGELIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/266 (11%), Positives = 89/266 (33%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KPD G + ++ + + + T + Sbjct: 618 DKLYFEPLTF---EDVMNIIEFEKPDGVIVQFGGQTPLNLALRLMNAGVPLIGTSPDAID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + + P + + + ++ P V++P G+ ++ Sbjct: 675 RAEDRERFKQFLNKLNLRQPPNGTAMSMVEAREIAEKLTFPLVLRPSYVLGGRGMDIVYS 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 S+ + LI+++++ +E+ + D + + Sbjct: 735 MDEFDHYFRHSALVSPEHPTLIDKFLENAVEVDVDALADGEDVYIGGVMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +++ + P + ++ +E++R + +G G+ F +V+ +E+N + Sbjct: 795 ---DSASVLPPYSLSSELIREIERQTVAMAKELGVVGLMNVQFAI--KDNEVYIIEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G +L Sbjct: 850 ASRT----VPFVSKATGVPLAKLATR 871 >gi|163941626|ref|YP_001646510.1| carbamoyl phosphate synthase large subunit [Bacillus weihenstephanensis KBAB4] gi|226700922|sp|A9VTC6|CARB_BACWK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|163863823|gb|ABY44882.1| carbamoyl-phosphate synthase, large subunit [Bacillus weihenstephanensis KBAB4] Length = 1072 Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109 L G G + + + + + IL + L D R+ + +P Sbjct: 89 TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPIPSST 147 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 I + I P +++P G + ++ + + + Q L+E Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEIVSGGLKHSPVTQCLLE 207 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S D + + + + Y+ ++ Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 860 >gi|296136188|ref|YP_003643430.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia K12] gi|295796310|gb|ADG31100.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia K12] Length = 1074 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A ++ D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + + + + ++LLIE+ Sbjct: 149 AHTLEEAWAVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 33/296 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL G++ + D D V V+ +P Sbjct: 578 VHAALAMRADGYETVMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKERPTGVIVQY 637 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ A ++ + P + + Sbjct: 638 GGQTPLKLALDLEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEAL 697 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ +H +L++++ D IE Sbjct: 698 TKAEEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 757 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + ++ Sbjct: 758 DVDAICDGTEVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAATVARIKEQTVKLAHG 814 Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F L + +F LE+N + T P ++ G ++ Sbjct: 815 LKVVGLMNVQFAIQQLDGEDRIFLLEVNPRASRT----VPFVSKATGLQLAKIAAR 866 >gi|37524606|ref|NP_927950.1| carbamoyl phosphate synthase large subunit [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784030|emb|CAE12899.1| carbamoylphosphate synthetase large subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1074 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRCRFDIAMKKIGLETPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEALAVADQVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + A ++ + P ++ ++ ++ Sbjct: 648 LKLARELEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPENATVTTIERAVEKANI 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + + ++ +L++ ++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVNVSNDAPVLLDCFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDDEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867 >gi|282896743|ref|ZP_06304751.1| D-alanylalanine synthetase [Raphidiopsis brookii D9] gi|281198461|gb|EFA73349.1| D-alanylalanine synthetase [Raphidiopsis brookii D9] Length = 391 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 114/342 (33%), Gaps = 49/342 (14%) Query: 1 MAVLMGGIS-SEREV--------SLSS----GKACASALEDAGFKVSQIDVDR-SVGLVL 46 + V+ GG S E V S + + A AL GF + D ++ L Sbjct: 31 IVVIHGGDSNKEGSVIYKTHNPRSRKTYEQVAQDIAKALMTIGFDHVFVMADDMTLPQRL 90 Query: 47 AHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 LA+ G G + + +LE+L IPY L S++ K K+ + + G Sbjct: 91 KQENIHLAWLNTGGVQGYNSVCHTPALLEMLGIPYVGHNPLNSSILDQKHIFKRELQTWG 150 Query: 105 VPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + P + + H P+V+KP+ G +SL I K + + Sbjct: 151 INTAPFVTWHPAQGLFDHHRSENFAITFPNYKGPFVVKPVSGRASLNIHFAKNIEDLSAA 210 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---------------PKSD 198 + H LIE Y G E V G P Sbjct: 211 VANIHHTTH-STALIETYFPGREFCVSVCGYVIHINKTFYKKTQPFAFSTIERILEPGEH 269 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 ++ K L ++ + + +A +Q+ + R D D + + Sbjct: 270 IFTSMDKKPITTERIHLLDDHESELKQNLIEIAQKLYQSFHLNTLVRVDLRSDE-NGILH 328 Query: 259 WLEINVQPGMT-----PVSIFPEMAAYAGYSFRELLLWMVED 295 LE N +P + S+ E ++ +L+L ++ D Sbjct: 329 VLEANPKPDLKRPNNIATSLVAEGLHEQRMNYEDLILSLLSD 370 >gi|188996191|ref|YP_001930442.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] gi|188931258|gb|ACD65888.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] Length = 558 Score = 71.4 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + + ++ +PD Sbjct: 29 SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKIIEKERPDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G D + IL+ + + + D+ K+ + + G+ + S Sbjct: 89 TLGGQTALNLAIDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + ++L+E+ Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLDASPIHEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPAITLSDREYQILRNYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|324327785|gb|ADY23045.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +LE + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|42782979|ref|NP_980226.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC 10987] gi|81830987|sp|Q732I3|CARB_BACC1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|42738906|gb|AAS42834.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus ATCC 10987] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +LE + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVVFE--NQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|237756464|ref|ZP_04585000.1| carbamoyl-phosphate synthase large chain, N- section [Sulfurihydrogenibium yellowstonense SS-5] gi|237691378|gb|EEP60450.1| carbamoyl-phosphate synthase large chain, N- section [Sulfurihydrogenibium yellowstonense SS-5] Length = 558 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + + ++ +PD Sbjct: 29 SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKIIEKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + IL+ + + + D+ K+ + + G+ + S Sbjct: 89 TLGGQTALNLAVDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + ++L+E+ Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLDASPIHEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPAITLSDREYQILRNYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|114778232|ref|ZP_01453104.1| carbamoyl-phosphate synthase large subunit [Mariprofundus ferrooxydans PV-1] gi|114551479|gb|EAU54034.1| carbamoyl-phosphate synthase large subunit [Mariprofundus ferrooxydans PV-1] Length = 1071 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ +PD Sbjct: 29 SGVQACKALKEEGYRVILVNSNPATIMTDPEFADATYIEPVTWEVVAKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G ILE + + A ++ D+ R K + G+ + Sbjct: 89 TMGGQTALNCALSLNKHGILEKFNVKLIGAQPDAIDMAEDRERFKDAMDRLGLEMARGGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + + D++L+E+ Sbjct: 149 AHSMDEARSLASDIGYPIIIRPSFTLGGSGGGIAYNPEEFEQIAASGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SIIGWKEFEMEVMRDHADNCVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFAVNPVDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 93/290 (32%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL D G++ + D D S L L + ++ G Sbjct: 585 ALSDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVMAIVDVEQPAGVIVQFGGQTP 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T+ ++ A ++ + P + + Sbjct: 645 LKLAESLEAAGVPIIGTNPDMIDLAEDRERFQKLLHELKLLQPENGTARSTDEALAVAAN 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ ++ + + ++ + +L++++ + IEL + Sbjct: 705 IGYPVVVRPSYVLGGRAMQVVHNEKGLLRYMREAVQASPDHPVLLDRFLNNAIELDVDAL 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P I I EV+R A+ +G Sbjct: 765 SDGKRVVIGGIMEHIEEAG---VHSGDSACCLPPHSISDAIIDEVRRQTAALGLALHVKG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F ++ LE+N + T P ++ G ++ + Sbjct: 822 LLNIQFAV--QGETIYVLEVNPRASRT----VPFVSKATGKPLAKIAARI 865 >gi|116748159|ref|YP_844846.1| D-alanine--D-alanine ligase domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697223|gb|ABK16411.1| D-alanine--D-alanine ligase domain protein [Syntrophobacter fumaroxidans MPOB] Length = 357 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 29/315 (9%) Query: 11 EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLH---GNFGE 64 E +V L A ++AL G + ++ + + L +P L FN++ G+ Sbjct: 44 EADV-LVQAGAVSTALAALGHLPRLLALNMDLQAAIDELLGIRPRLVFNLVESINGSGRF 102 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTM 118 +ILE L IP+T + A + +K+ +K+++ G+ P + + Sbjct: 103 IHFAPSILEHLRIPFTGARADAILSTSNKLLAKRLLDRAGIRTPPWFEKPGGARRHPGSP 162 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 V + G +V +D ++ + G + E +++G E Sbjct: 163 FPAGTCLVKSVWEHASIGIDENSLVQARDAGDLMEPILQREAMLGGEWFAESFIEGREFN 222 Query: 179 ---------CGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLD-----I 223 V+ A + Y K+ + P + Sbjct: 223 ISLIEEAGRVRVLPPAEILFRGFPSDTPKIVGYRAKWETGSFEFRNTPRTFEFAAEDEGL 282 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + ++ + G G +R DF D + + LE+N P ++P + F AA AG Sbjct: 283 LRRLSEISMNCWELFGLNGYARVDFRVDGVE-VPWVLEVNANPCLSPDAGFIAAAARAGL 341 Query: 284 SFRELLLWMVEDASC 298 S+ +++ + A C Sbjct: 342 SYTDVIDRIASGARC 356 >gi|213419729|ref|ZP_03352795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 53 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 EIN PG T +S++P++ +G + +L+ ++E A Sbjct: 2 INEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 39 >gi|149921039|ref|ZP_01909499.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica SIR-1] gi|149818171|gb|EDM77627.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica SIR-1] Length = 1091 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G++V I+ + + VL KPD Sbjct: 29 SGTQAIKALRQEGYEVVLINSNPATIMTDPELADETYVRPLTPDDLDQVLRESKPDAVLP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G +E+ ++ A D+ ++ V VP Sbjct: 89 TVGGQTALNLALEAGRRGIFEHHGVELLGAPLEVIEKAEDRDRFKALMVSIGLEVPRSFY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D+ I P +I+P G + + + S + + LIE+ Sbjct: 149 VHDMAEARDALDEIGFPAIIRPSFTMGGAGAAIAYNREEFEKMAAHALSESLRSEALIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + + + + + Sbjct: 209 SVLGWKEYELEVMRDGKDNFVVICAIENLDPMGVHTGDSVTLAPALTLTDKEYQHMRTAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G F FDP S ++ +E+N P ++ S + G+ + Sbjct: 269 AAVVNAVGVTTGGCNIQFAFDPESGRMIVIEMN--PRVSRSS--ALASKATGFPIAKFAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 62/172 (36%), Gaps = 10/172 (5%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176 + H I P +++P + ++ D+ + + + + +LI+++ +E Sbjct: 702 FNIAHQIGFPVLVRPSYVLGGRAMEIVHSDEQLDSYMKLAVRASPDHPVLIDEFLAHAVE 761 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + D V + + ++ + P + + K ++ + Sbjct: 762 FDVDAVADGKDVVIAGIMEHVEEAGIHSG---DSTCCMPPVSVGHETLKVIRETTESLAR 818 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + +++ LE+N + T P ++ G +F ++ Sbjct: 819 ELGVVGLMNVQYAL--KGERLYILEVNPRGSRT----VPFVSKAVGTAFAKI 864 >gi|218232482|ref|YP_002368686.1| carbamoyl phosphate synthase large subunit [Bacillus cereus B4264] gi|226700920|sp|B7H6M2|CARB_BACC4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|218160439|gb|ACK60431.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus B4264] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +L+ + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|30021975|ref|NP_833606.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC 14579] gi|296504381|ref|YP_003666081.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis BMB171] gi|81433833|sp|Q819S3|CARB_BACCR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|29897531|gb|AAP10807.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC 14579] gi|296325433|gb|ADH08361.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis BMB171] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +L+ + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|206976709|ref|ZP_03237613.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus H3081.97] gi|217961307|ref|YP_002339875.1| carbamoyl phosphate synthase large subunit [Bacillus cereus AH187] gi|222097332|ref|YP_002531389.1| carbamoyl phosphate synthase large subunit [Bacillus cereus Q1] gi|226700921|sp|B7HLM0|CARB_BACC7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813558|sp|B9IVW3|CARB_BACCQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|206745019|gb|EDZ56422.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus H3081.97] gi|217067322|gb|ACJ81572.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH187] gi|221241390|gb|ACM14100.1| carbamoyl-phosphate synthase [Bacillus cereus Q1] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +LE + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|52141604|ref|YP_085227.1| carbamoyl phosphate synthase large subunit [Bacillus cereus E33L] gi|81824210|sp|Q636E0|CARB_BACCZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|51975073|gb|AAU16623.1| carbamoyl-phosphate synthase [Bacillus cereus E33L] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +LE + + + A + D+ + ++ P PS Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|254721419|ref|ZP_05183208.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. A1055] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMRIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|170688824|ref|ZP_02880027.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0465] gi|170667179|gb|EDT17939.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0465] Length = 1073 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 581 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 641 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 761 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 817 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 818 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 861 >gi|196038725|ref|ZP_03106033.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus NVH0597-99] gi|196030448|gb|EDX69047.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus NVH0597-99] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|167636429|ref|ZP_02394728.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0442] gi|254739826|ref|ZP_05197519.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Kruger B] gi|167528171|gb|EDR90958.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0442] Length = 1071 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 579 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 638 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 639 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 698 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 699 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 759 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 815 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 816 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 859 >gi|196035930|ref|ZP_03103332.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W] gi|218905016|ref|YP_002452850.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820] gi|254683404|ref|ZP_05147264.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. CNEVA-9066] gi|226700918|sp|B7JJX3|CARB_BACC0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|195991579|gb|EDX55545.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W] gi|218534976|gb|ACK87374.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|118479107|ref|YP_896258.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis str. Al Hakam] gi|196047414|ref|ZP_03114626.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus 03BB108] gi|225865868|ref|YP_002751246.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus 03BB102] gi|166989832|sp|A0RHQ8|CARB_BACAH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813557|sp|C1EPQ0|CARB_BACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|118418332|gb|ABK86751.1| carbamoyl-phosphate synthase large subunit [Bacillus thuringiensis str. Al Hakam] gi|196021722|gb|EDX60417.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus 03BB108] gi|225790296|gb|ACO30513.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus 03BB102] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|30263889|ref|NP_846266.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Ames] gi|47529318|ref|YP_020667.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49186736|ref|YP_029988.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Sterne] gi|65321214|ref|ZP_00394173.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Bacillus anthracis str. A2012] gi|165872300|ref|ZP_02216937.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0488] gi|167641115|ref|ZP_02399370.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0193] gi|170708780|ref|ZP_02899216.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0389] gi|177654894|ref|ZP_02936611.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0174] gi|190565897|ref|ZP_03018816.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227813205|ref|YP_002813214.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. CDC 684] gi|229602930|ref|YP_002868122.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0248] gi|254735926|ref|ZP_05193632.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Western North America USA6153] gi|254751016|ref|ZP_05203055.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Vollum] gi|254756681|ref|ZP_05208710.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str. Australia 94] gi|81837832|sp|Q81WF2|CARB_BACAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813555|sp|C3P656|CARB_BACAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813556|sp|C3L740|CARB_BACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|30258533|gb|AAP27752.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. Ames] gi|47504466|gb|AAT33142.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180663|gb|AAT56039.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. Sterne] gi|164711976|gb|EDR17516.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0488] gi|167510895|gb|EDR86286.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0193] gi|170126265|gb|EDS95156.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0389] gi|172080405|gb|EDT65492.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0174] gi|190562816|gb|EDV16782.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227005069|gb|ACP14812.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. CDC 684] gi|229267338|gb|ACQ48975.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis str. A0248] Length = 1072 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|317152916|ref|YP_004120964.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio aespoeensis Aspo-2] gi|316943167|gb|ADU62218.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio aespoeensis Aspo-2] Length = 1078 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + +V ++ +PD Sbjct: 29 SGTQALKALKEEGYEVVLINSNPASIMTDPELADRTYIEPIEPETVARIIEKERPDALLP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ + + A S ++ R+ VP Sbjct: 89 TLGGQTGLNTALAVAEMGVLDRFNVELIGANIAAINKAESREEFRAAMENIGLSVPESGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +I+ P +++P G V + + + + ++++E+ Sbjct: 149 CRNMEDVRRWGQIIAFPIIVRPAYTLGGSGGGVAYNMEELEEICANGLALSMKHEIMLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SILGWKEYELEVMRDRNDNCVIICSIENLDPMGVHTGDSVTVAPAQTLTDDEYQMMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVETGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 87/266 (32%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ +PD G + ++ + + + T + Sbjct: 618 DKLYFEPLTF---EDVMNIIDFEQPDGVIVQFGGQTPLNLALRLMRAGVPLIGTSPDAID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + + + P V++P G+ ++ Sbjct: 675 RAEDRERFKQFLNKLHLKQPPNGTAMSMTAAKEIAQGLGFPLVLRPSYVLGGRGMDIVYS 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 S+ + LI+++++ IE+ + D + + Sbjct: 735 MDEFEAYFRDSARVSPEHPTLIDKFLEYAIEVDVDALADGEDVYIGGVMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +++ + P + ++ +E++R + +G G+ F +VF +E+N + Sbjct: 795 ---DSASVLPPYSLSSEMIREIERQTVAMARELGVVGLMNVQFAI--KDGEVFIIEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G +L Sbjct: 850 ASRT----VPFVSKATGVPLAKLATR 871 >gi|52549390|gb|AAU83239.1| carbamoyl-phosphate synthase large subunit [uncultured archaeon GZfos27B6] Length = 1090 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 104/311 (33%), Gaps = 45/311 (14%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 50 SGTQACKALKEEGYEVVLVNSNPATIMTDPGMADQTYIEPLTVENVEEIIAKERPDALLP 109 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + IL + A D++ K+ ++ + + S Sbjct: 110 NLGGQTGLNLSAELSKRGILAKYGVELIGVEADAIERGEDRIVFKETMTKLDISMPESSP 169 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ + + + + S + Q+L+E+ Sbjct: 170 AYSVEEAEEIAQELGYPVVIRPAYTMGGTGGGIVYNVEELKTIVTRGISASLIGQVLVEE 229 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229 V G + + + +S V P I ++ +++Q Sbjct: 230 SVLG--WEELELEVIRDKKGNKITVCFIENVDPMGVHTGDSFCVAPMLTIGEELQRKLQE 287 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS--------IFPEM---A 278 L++ AIG G + F +P +V +EIN + T S FP A Sbjct: 288 LSYRIVDAIGVLGGTNIQFAHNPEDGRVVVIEINPR---TSRSSALASKATGFPIARISA 344 Query: 279 A-YAGYSFREL 288 G + EL Sbjct: 345 KLAVGITLDEL 355 Score = 39.9 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 76/266 (28%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP+ G + + ++I T + Sbjct: 628 DKLYFEPLTV---EDVLSIYEKEKPEGVIVQFGGQTPLNIARELHEAGVKILGTSPDSIH 684 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK-GGSSLGIIVIK 145 A + R + S P + + I P +++P G IV Sbjct: 685 LAEDRELFREMMIKLSIPQPEGGTARSVEEALAVARKIGFPVMVRPSFVLGGRGMEIVYD 744 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + L+ + IE + D S + + Sbjct: 745 EKMLLDYAKAAVDVSPEYPMLIDKFLEHAIETEVDAIADGSDVYIAAVMEHIELAG---V 801 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P I +++ A+ G+ + + KV+ LE N + Sbjct: 802 HSGDSACVIPPRNISKGNLAKIEDYTKKIADALEVVGLMNIQYAI--ANGKVYILEANPR 859 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 860 ASRT----VPLVSKVTGVPIAKIATK 881 >gi|227358194|ref|ZP_03842535.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC 29906] gi|227161530|gb|EEI46567.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC 29906] Length = 1075 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F DP + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 E + + T + A ++ + P ++ +D Sbjct: 648 LKLARALEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + DI +++ +G +G Sbjct: 768 CDGQQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KGNDVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|2231985|gb|AAB62174.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 105/269 (39%), Gaps = 43/269 (15%) Query: 30 GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55 F I + ++ L + D+AF Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAF 60 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V ++++ Sbjct: 61 PVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDK 120 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ P +KP + GSS G+ + + + + ++ + ++LIEQ + G Sbjct: 121 GDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILIEQAISGC 178 Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ C VMG+ + E + S N+ +PA IP++ VQ Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQ 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 A ++ +GCRG++R D V Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >gi|302391678|ref|YP_003827498.1| carbamoyl-phosphate synthase large subunit [Acetohalobium arabaticum DSM 5501] gi|302203755|gb|ADL12433.1| carbamoyl-phosphate synthase large subunit [Acetohalobium arabaticum DSM 5501] Length = 1070 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 97/318 (30%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+D G +V ++ + V ++ KPD Sbjct: 29 SGSQACRALKDEGVEVILVNSNPATIMTDQNIADRVYIEPLTAEVVAKIIKQEKPDGLLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + + +E+ T + A DK V Sbjct: 89 TLGGQTGLNIASELARKGLLEELDIEMLGTPLDTIEKAEDRDKFIQMLHEIDEPVLESKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G V + + + + D++LIE+ Sbjct: 149 ADSIEEAKEIAEGIGYPVIIRPAYTMGGTGGGVADNPEELEEVASRGLKHSLIDEVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + Y+ ++ Sbjct: 209 SIKGW-KEVEYEVMRDGANNCITVCNMENFDPVGIHTGDSIVVAPSQTLSDKEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G F DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SLKIIRELGIEGGCNVQFALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVST 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGMTLAEIENAITKK 341 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 37/289 (12%) Query: 15 SLSSGKACASALEDAGFKVSQ-----------IDV----------DRSVGLVLAHLKPDL 53 S+ S AL + G++ D + ++ H P+ Sbjct: 575 SVHSA----WALHEEGYESIIANNNPETVSTDFDTSDRLYFEPLTKEDMLNIIEHEDPEG 630 Query: 54 AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 G + E +EI T + A DK + P ++ Sbjct: 631 VVVQFGGQTSINLAKPLADEGVEILGTSVEAIDIAEDRDKFMNLLDELDIPTPTGSTVYS 690 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + I P V++P + V+ K++ + + + + LL+++Y+ Sbjct: 691 VPEAKKTATEIGYPVVVRPSYVLGGRAMEVVYKEEELMQYMETEAKVSEEHPLLVDKYIT 750 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232 G E+ + D + P + S +S V P + + +++ Sbjct: 751 GKEIEIDAISDGEDVLI----PGIMEHIERAGVHSGDSIAVYPEQTLSEDEREQLIDYTV 806 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276 +A+ +G+ ++ V+ +E+N P ++ V+ P Sbjct: 807 KLGRALNVKGLINIQYVV--ADGTVYVIEVNPRSSRTIPYLSKVTGVPM 853 >gi|152978227|ref|YP_001343856.1| carbamoyl phosphate synthase large subunit [Actinobacillus succinogenes 130Z] gi|150839950|gb|ABR73921.1| carbamoyl-phosphate synthase, large subunit [Actinobacillus succinogenes 130Z] Length = 1069 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G+KV + D D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIQWQIVEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTFDEAWKAQEKVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 96/289 (33%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + ++H G Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVHTERPWGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ + + P + + + Sbjct: 642 LKLANALHDNGVNIIGTSADSIDAAEDRERFQKILQDLNLKQPNNRTARNAQEAVTLADE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P +P + E++R +A+ G Sbjct: 762 CDGTDVVMGGIMQHIEQAGIHSG---DSACSLPPYSLPKGVQDEIRRQTAAMARALNVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +F LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QNDVIFVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861 >gi|85708773|ref|ZP_01039839.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1] gi|85690307|gb|EAQ30310.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1] Length = 338 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 104/290 (35%), Gaps = 18/290 (6%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77 ++LE G + D S ++ D F +L+ G + L+ + + + Sbjct: 45 HEVRTSLEQLGLNLHLAD---SYDVLFTRPDVDFVFPLLNRGGFVNSEMLIPVLCNMHRL 101 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPL 133 PY + L DK SK V + GVP P R + + P +VIKP Sbjct: 102 PYLGAMPFLRGLGDDKSVSKLVATHAGVPTAPWFCFRRGAPVQESDLPPSPDGRWVIKPN 161 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LD 188 +S GI + + H ++E Y+DG ++ C + Sbjct: 162 ASSASWGISDAYDWNGVTNSIADIHGQGHD--AIVEPYLDGYDVQCAFITMHGKPVALPM 219 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + ++Y K + +T + ++ +A + R Sbjct: 220 LWYERENTQKLWTYYEKRDLVPNTEKAALKRFDHAEFAPRIEEMAHKFAREFLPFDYGRI 279 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +F D + + ++EIN+ + + + A AG+S +LL ++ +A Sbjct: 280 EFRVDLKTGDINFIEINLNCNLWSEKVMAKAAKEAGFSHGDLLETLLAEA 329 >gi|49479112|ref|YP_037948.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81828222|sp|Q6HES8|CARB_BACHK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|49330668|gb|AAT61314.1| carbamoyl-phosphate synthase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1072 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I I P +++P G + ++ + + + Q L+E+ Sbjct: 149 IHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + + + + Y+ ++ Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860 >gi|260892280|ref|YP_003238377.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii KC4] gi|260864421|gb|ACX51527.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii KC4] Length = 1075 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V + D + V VL +PD Sbjct: 29 SGTQACRALREEGLEVVLVNSNPATIMTDPNMADRVYIEPLTPEFVAKVLRKERPDGLLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A + + +P Sbjct: 89 TLGGQVGLNLAVELSRMGVLDELGVELLGTPLETIEKAEDRELFKETMRAIGEPIPESRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G + + ++ + + + Q+L+EQ Sbjct: 149 VSRLEDAVSFAREIGFPVVVRPAYTLGGTGGGIARNEEELLEIAARGLKHSLIGQILVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + ++ + + Y+ ++R Sbjct: 209 CVSGWKEIEFEVMRDGADNCITVCCMENLDPMG-IHTGDSIVVAPSQTLTDKEYQMLRRA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+G RG F DP S + + +E+N P ++ S + GY ++ Sbjct: 268 AIKIIRALGIRGGCNIQFALDPRSLRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 92/293 (31%), Gaps = 29/293 (9%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C AL + G K I+ V V VL KP+ G Sbjct: 579 CVWALREEGIKAIIINNNPETVSTDFDTADRLYFEPLVAEDVLNVLEKEKPEGVLVQFGG 638 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + +I T + A +K + P + + Sbjct: 639 QTAINLAKPLAAAGFKILGTAVEDIDRAEDREKFDRVLEAENIPRPPGGAAKSPEEALAV 698 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + + + ++ + +L+++Y+ G E+ Sbjct: 699 AERVGFPVLVRPSYVLGGRAMEIVYNREELEEYMRFAARVSPEYPVLVDKYIFGKEVEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + P + ++ ++V +A+ Sbjct: 759 AISDGEDVLIPGIMEHIERAGIHSG---DSIAVYPPRTLNGEVVEQVVSYTTALARALRV 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RG+ ++ D KV+ LE+N + T P ++ G L + ++ Sbjct: 816 RGLLNIQYVVDAE-GKVYVLEVNPRASRT----VPYLSKITGIPMIPLAVKVI 863 >gi|197283936|ref|YP_002149808.1| carbamoyl phosphate synthase large subunit [Proteus mirabilis HI4320] gi|194681423|emb|CAR40261.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis HI4320] Length = 1075 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F DP + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 E + + T + A ++ + P ++ +D Sbjct: 648 LKLARALEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + DI +++ +G +G Sbjct: 768 CDGQQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KGNDVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|94500164|ref|ZP_01306698.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65] gi|94427737|gb|EAT12713.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65] Length = 1073 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D +V ++ +PD+ Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPSMADATYIEPITVEAVTKIIEQERPDVLLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +LE + + + D+ R + + G+ + Sbjct: 89 TMGGQTALNCALGLEKAGVLEKYGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPKASI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEAWEVQKDLGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + ++ Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLSDKELQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 40/328 (12%), Positives = 106/328 (32%), Gaps = 52/328 (15%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39 + VL GG + G+ +AL ++ G++ + D D Sbjct: 562 IIVLGGGPN-------RIGQGIEFDYCCVHAALASKEEGYEAIMVNCNPETVSTDYDTSD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V + KP G + + I T + A Sbjct: 615 RLYFEPLTLEDVLEIADKEKPKGVIVQYGGQTPLKLANELEAAGVPIIGTSPEAIDRAED 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + I P V++P + ++ + ++ Sbjct: 675 RERFQQMIQRLGMKQPKNSTVTSEQEAIQKAAEIGYPLVVRPSYVLGGRAMEIVNDETAL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++ +++ +E+ + D V + + Sbjct: 735 VRYMTEAVKVSNDSPVLLDYFLNQAVEVDIDAVCDGEDVVIGAIMQHIEQAGIHSG---D 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----V 264 ++ + P +P D+ E++ + +G G+ + + +++ +E+N Sbjct: 792 SACSLPPYSLPEDVQDEMRAQVAAMARELGVVGLMNTQLAY--QDGEIYVIEVNPRASRT 849 Query: 265 QPGMTP---VSIFPEMAAYA-GYSFREL 288 P ++ S+ A G + +EL Sbjct: 850 VPFVSKCIGTSLAAIAAKVMTGKTLKEL 877 >gi|33151478|ref|NP_872831.1| carbamoyl phosphate synthase large subunit [Haemophilus ducreyi 35000HP] gi|71152355|sp|Q7VP67|CARB_HAEDU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|33147698|gb|AAP95220.1| carbamoyl-phosphate synthase, large subunit [Haemophilus ducreyi 35000HP] Length = 1075 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D D +++ ++ +PD Sbjct: 29 SGAQAVKALREEGYKVILVNSNPATIMTDPDMADVTYIEPIQWQTLEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +L+ + + A + D+ R K ++ G+ S + Sbjct: 89 TMGGQTALNCALALSKNGVLKKYGVELIGATEDAIDKAEDRGRFKDAMTKIGLNTPKSFI 148 Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F +Q + P +I+P G + + + +LLIEQ Sbjct: 149 CHSFEEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AGF+ + D D V ++ +P G Sbjct: 582 ALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIYKEQPWGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A + + P + + Sbjct: 642 LKLAHALEQNGVNIIGTSADSIDAAEDRARFQKILTDLGLKQPNNRTARNAEEAVKLAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNNYMQEAVSVSNDSPILLDHFLKNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D+ + + + ++ + + ++ E++R A+G +G Sbjct: 762 CDSEQVLIGGIMQHVEQAGIHSG---DSACSLPAYSLTNEVQGEIRRQTSAMAFALGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + F + ++ LE+N + T P ++ G Sbjct: 819 LMNVQFAV--QNETIYVLEVNPRASRT----VPFVSKATG 852 >gi|227904290|ref|ZP_04022095.1| carbamoyl phosphate synthase large subunit [Lactobacillus acidophilus ATCC 4796] gi|227867938|gb|EEJ75359.1| carbamoyl phosphate synthase large subunit [Lactobacillus acidophilus ATCC 4796] Length = 1062 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V +P+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A P + + +++ Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + + L +L++ Y+DG E Sbjct: 697 AEKLDYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P +I +++ + + C Sbjct: 757 AISDGYDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEIKEKITEVTKKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRIIRQEYPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G IL+ L I + + + + D+ + K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCKELGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|325111080|ref|YP_004272148.1| D-alanine--D-alanine ligase domain protein [Planctomyces brasiliensis DSM 5305] gi|324971348|gb|ADY62126.1| D-alanine--D-alanine ligase domain protein [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 104/310 (33%), Gaps = 28/310 (9%) Query: 10 SEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65 SER+V L +A ++A+ G + +D+ R + L +PD FN++ G D Sbjct: 23 SERDV-LVQAEAVSAAVSRMGHRPRSLACTLDLQR-LQRKLIERRPDCVFNLVESLDGSD 80 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 L+ + LLE ++ + P+ + L+ Sbjct: 81 RLMPLVPLLLEQLQIPYTGSSAVSIVQSSDKLSAKHLLRTASLPTPGWSDGEDVPDSLLH 140 Query: 126 PPYVIKPLKGGSSL-----GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC- 179 P ++K + +S I + L + G E+++DG E Sbjct: 141 RPVIVKAIHEHASFGLDDSSIQTFHSASQLREVLDDRLAAT-GQPHFAEEFIDGREFNVS 199 Query: 180 --------------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 + + V + + + + D+ Sbjct: 200 LLAGSRGPVVLPPAEIDFSFLPSESLRIVGYAAKWEEDSAEYVGTPRRFDLPEQDRDLVG 259 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 E+Q L G +G +R DF D R+ + LEIN P + P + F AG S+ Sbjct: 260 EIQELCRRCWNVFGLKGYARVDFRVDTQ-RRPWILEINGNPCLAPDAGFAAALGAAGLSY 318 Query: 286 RELLLWMVED 295 L ++++ Sbjct: 319 DAGLQKILQN 328 >gi|121608130|ref|YP_995937.1| carbamoyl-phosphate synthase large subunit [Verminephrobacter eiseniae EF01-2] gi|121552770|gb|ABM56919.1| carbamoyl-phosphate synthase large subunit [Verminephrobacter eiseniae EF01-2] Length = 1089 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G++V I DV +++ ++A +PD Sbjct: 30 SGVQACKALREEGYRVILINSNPATIMTDPATADVTYIEPITWQTIEKIIAKERPDAILP 89 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ + + A + D+++ K ++ G+ S Sbjct: 90 TMGGQTALNCALDLWHNGVLDKYRVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 149 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 150 AHSMEQAWAVQKDLGFPAVIRPSFTLGGTGGGIAYNPEEFETICKRGLQASPTNELLIEE 209 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 210 SLLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 269 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + F +P ++ +E+N P ++ S + G+ ++ Sbjct: 270 LAVLREIGVDTGGANVQFAVNPEDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 325 Query: 291 WM 292 + Sbjct: 326 KL 327 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 96/290 (33%), Gaps = 28/290 (9%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D+ + ++ KPD G Sbjct: 590 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDMLEIVDKEKPDGVIVQYGGQTP 649 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + E + I T ++ +A ++ + P + ++ Sbjct: 650 LKLALGLAAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAQALEKAAS 709 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + + ++ ++ +L++++++ + C V Sbjct: 710 LGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIECDVDC 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 L + +S ++ + P + E++R + + + G+ Sbjct: 769 LRDLQGQTFIGGVMEHIEQAGVHSGDSACSLPPYYLSGATVDELKRQSAAMAKGLNVVGL 828 Query: 244 SRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F ++ + ++ LE+N + T P ++ G ++ Sbjct: 829 MNVQFAIQEVNGQDVIYVLEVNPRASRT----VPFVSKATGIPLAKVAAR 874 >gi|294340423|emb|CAZ88804.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Thiomonas sp. 3As] Length = 1074 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A ++ D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHTLEEAWGVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 33/296 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL G++ + D D V V+ +P Sbjct: 578 VHAALAMRADGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKERPTGVIVQY 637 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ A ++ + P + + Sbjct: 638 GGQTPLKLALDLEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEAL 697 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ +H +L++++ D IE Sbjct: 698 TKAEEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 757 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + ++ Sbjct: 758 DVDAICDGTEVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAATVARIKEQTVKLAHG 814 Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F L + +F LE+N + T P ++ G ++ Sbjct: 815 LKVVGLMNVQFAIQQLDGEDRIFLLEVNPRASRT----VPFVSKATGLQLAKIAAR 866 >gi|254468615|ref|ZP_05082021.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium KB13] gi|207087425|gb|EDZ64708.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium KB13] Length = 1064 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D + V ++A PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPNLADATYIEPIQWDIVEKIIAKENPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D ILE + + A + D+ K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLDRHGILEKYNVELIGASKQAIDKAEDRQLFKEAMNKIGLSSARSAI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q I P +I+P G + + + ++LLIE+ Sbjct: 149 AHSMEEAHQVQASIGYPVIIRPSFTMGGSGGGIAYNKDEFIEICERGLDASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENLDPMGVHTGDSITIAPAQTLTDKEYQIMRSAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPSDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 93/286 (32%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ + D D V ++ PD G Sbjct: 582 ALKEEGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIIHIENPDGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 ++I T + A ++ + V P + + Sbjct: 642 LKLAKGLEAAGVKIVGTTPEDIDVAEDRERFQKILVDLGLNQPPNRTARTPEEAIQLAAE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + + ++ +H +L++++ D E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEESDLQRYMTEAVKVSHESPVLLDRFLNDAQEIDVDAI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + I K++ + + +A+ G Sbjct: 762 SDGEDVVVGGIMQHIEQAG---VHSGDSACSLPPFDLSETIQKDLIKQTKMLAKALKVNG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F ++ LE+N + T P ++ G ++ Sbjct: 819 LMNIQFAI--QGDTIYILEVNPRASRT----VPFVSKAIGKPLAKI 858 >gi|161510953|ref|YP_089428.2| carbamoyl phosphate synthase large subunit [Mannheimia succiniciproducens MBEL55E] Length = 1070 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + ++V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F + + P +I+P G + + + +LLIEQ Sbjct: 149 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + ++H G Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ + + P + + + + Sbjct: 642 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ D+ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + ++I E++R +A+ G Sbjct: 762 CDGEQVIIGGIMQHIEQAGIHSG---DSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + ++ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QNDVIYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861 >gi|52308343|gb|AAU38843.1| CarB protein [Mannheimia succiniciproducens MBEL55E] Length = 1100 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + ++V ++ +PD Sbjct: 59 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 118 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ ++ G+ S + Sbjct: 119 TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 178 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F + + P +I+P G + + + +LLIEQ Sbjct: 179 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 238 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 239 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 298 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 299 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 354 Query: 291 WM 292 + Sbjct: 355 KL 356 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + ++H G Sbjct: 612 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 671 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ + + P + + + + Sbjct: 672 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 731 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ D+ + + ++ S ++ +L++ + + IE+ + Sbjct: 732 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 791 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + ++I E++R +A+ G Sbjct: 792 CDGEQVIIGGIMQHIEQAGIHSG---DSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 848 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + ++ LE+N + T P ++ G ++ Sbjct: 849 LMNVQFAV--QNDVIYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 891 >gi|332288950|ref|YP_004419802.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis UMN179] gi|330431846|gb|AEC16905.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis UMN179] Length = 1062 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPIRWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D IL+ + + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGILQKYNVELIGATEDAIDKAEDRGRFKEAMAKIGLHTPKSFV 148 Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F +Q + P +I+P G + + + + +LLIEQ Sbjct: 149 CHTFAEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNREEFQAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 88/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + ++H G Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHIENPYGVIVHYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + + P + + Sbjct: 642 LKLANKLQENGVNIIGTSADSIDAAEDRQRFQQILNDLKLKQPSNRTAKNAEEAVKLADE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + P V++P + ++ + + ++ + +L++ ++D IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVQVSEDSPILLDHFLDNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + + I E++R A+ G Sbjct: 762 CDGKQVVIGGIMQHVEQAGIHSG---DSACSLPAYSLSQQIQDEIRRQTTEMAFALKVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--KGDTVYVLEVNPRASRT----VPFVSKATGVPLAKIAAR 861 >gi|226329196|ref|ZP_03804714.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198] gi|225202382|gb|EEG84736.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198] Length = 563 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + ++ + ++LLI++ Sbjct: 149 AHNLDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICIRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F DP + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|120556265|ref|YP_960616.1| carbamoyl-phosphate synthase, large subunit [Marinobacter aquaeolei VT8] gi|120326114|gb|ABM20429.1| carbamoyl-phosphate synthase large subunit [Marinobacter aquaeolei VT8] Length = 1072 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWKTVEKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEKHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRAAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + + ++LLI++ Sbjct: 149 AHSMDEAWKISEDIGFPCIIRPSFTMGGSGGGIAYNKDEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 99/322 (30%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39 + V+ GG + G+ +AL + G++ I D D Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + I T + A Sbjct: 615 RLYFEPITLEDVLEIINVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + + I P V++P + ++ + + Sbjct: 675 RERFQQMIQRLGLKQPENATVRSHEEGIVAAREIGYPLVVRPSYVLGGRAMEIVYDETEL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L++ +++ IE+ + D + V + + +S Sbjct: 735 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGTDVVIGGIMQHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + + E++ + G+ + +++ +E+N + T Sbjct: 792 SACSLPPYSLSRQVQDEMREAVKKMAIELDVIGLMNVQLAY--QDGEIYVIEVNPRASRT 849 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S + Sbjct: 850 ----VPFVSKAIGVSLAAVAAR 867 >gi|152976247|ref|YP_001375764.1| carbamoyl phosphate synthase large subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189081825|sp|A7GRL1|CARB_BACCN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|152024999|gb|ABS22769.1| carbamoyl-phosphate synthase, large subunit [Bacillus cytotoxicus NVH 391-98] Length = 1072 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G+KV ++ + V ++ +PD Sbjct: 29 SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +EI T + A D R+ + P Sbjct: 89 TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + ++ + + + Q L+E+ Sbjct: 149 VHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNT 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 640 INLAAKLAERGVKILGTSLEDLDRAEDRDKFEAALTELGIPQPVGKTATTVEQAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKVKEQIIENTIALGRGLKIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 817 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 860 >gi|328957537|ref|YP_004374923.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4] gi|328673861|gb|AEB29907.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4] Length = 1059 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADKVYIEPLTLEFVSQILRKERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D R+ + VP + Sbjct: 90 LGGQTGLNMAMELSNSGILEELSIELLGTKLSAIDQAEDRDLFRTLMKELNEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + +Q L+E Sbjct: 150 HTVAEALMFAEQIGFPLIVRPAFTMGGTGGGICDNEEELKEIVKNGLKLSPVNQCLVEIS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + ++ ++ + Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENFDPVGIHTGDSIVFAPTQTLTDKEHQMLRDSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVMHVIRLEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + + T L A + + P+ + + + Sbjct: 639 AINLAEPLTNMGITLLGTSVEDLDRAENRNLFEQALNELQVPQPLGDTATTESEAVVIAN 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ + + + + +LI++Y+ G E+ + Sbjct: 699 RIGYPVLVRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERSG---VHSGDSMAVYPPQTLSKEIQDTIVDYTTRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNVQFVL--HDNTVYVIEVNPRASRT----VPFLSKVTGILMAQVATKAI 860 >gi|283783818|ref|YP_003363683.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium ICC168] gi|282947272|emb|CBG86817.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium ICC168] Length = 1074 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATAYAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 IS P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 ISYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|157164628|ref|YP_001467556.1| carbamoyl phosphate synthase large subunit [Campylobacter concisus 13826] gi|112801156|gb|EAT98500.1| carbamoyl-phosphate synthase, large subunit [Campylobacter concisus 13826] Length = 1086 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 87/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D + S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPNFADATYIEPITKDSILRIIEKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L+ ++ + + ++ +P Sbjct: 89 TMGGQVALNAAMEVFESGLLKDVKFLGANPEAIKKGEDRQIFKATMQKIGMDLPESRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ + I P +I+ G V + ++LIE+ + Sbjct: 149 NMDDALNAANEIGFPLIIRASYTLGGAGSGVAYNMDEFKELANTGLDASPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F DP + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 82/260 (31%), Gaps = 11/260 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ KPD G + + +I T + ++ A Sbjct: 615 FEPIDF-EHVRSVIEREKPDGVIVHFGGQTPLKFAKRLSVIGAKIIGTTARVIDVAEDRK 673 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K P + + I P +++P + + + + Sbjct: 674 KFSEFINKIGVLQPKNDTATSLEEALQKAATIGYPVLVRPSYVLGGRAMRRVHNESELKE 733 Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + ++ ++ +L++++ D EL + D + + ++ Sbjct: 734 YMSEAVKVSNHSPVLLDKFLQDAKELDVDAICDGKEVYIGAIMEHIEEAGIHSG---DSA 790 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P + ++ K+V+R +G G+ F +++ +E+N + T Sbjct: 791 CILPPMSLSDEMIKKVERQTRDIALNLGVVGLMNIQFAI--YENELYMIEVNPRASRT-- 846 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 847 --VPFVSKATGVPMAKVATR 864 >gi|145298639|ref|YP_001141480.1| carbamoyl phosphate synthase large subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142851411|gb|ABO89732.1| carbamoyl-phosphate synthase, large subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1074 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A + D+ + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMMGATADAIDKAEDRRGFDIAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNTEEFVEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAILREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%) Query: 20 KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 A AL + G++ + D D V ++ KP Sbjct: 583 HAVL-ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEEVLEIVRIEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ +S P ++ + Sbjct: 642 GGQTPLKLARALEANGVPIIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I+ P V++P + ++ + + ++ S ++ +L+++++D EL Sbjct: 702 LTAERITYPLVVRPSYVLGGRAMEIVYDETDLRRYFAEAVSVSNESPVLLDRFLDDATEL 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + + + P + I E++ Sbjct: 762 DVDAICDGVDVVIGGIMEHIEQAGIHSG---DSGCSLPPYTLSKKIQDEIREQVRKLALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ +E+N + T P ++ G ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|292489399|ref|YP_003532286.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora CFBP1430] gi|292898382|ref|YP_003537751.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC 49946] gi|291198230|emb|CBJ45336.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC 49946] gi|291554833|emb|CBA22698.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora CFBP1430] gi|312173564|emb|CBX81818.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC BAA-2158] Length = 1074 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ ELL + Sbjct: 327 AVGYTLDELLNDI 339 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ +P G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ + Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAI 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I +++ +G RG Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDVMRQQVEKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867 >gi|317055757|ref|YP_004104224.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7] gi|315448026|gb|ADU21590.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7] Length = 1074 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 94/306 (30%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K ++ G+ + S Sbjct: 89 NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMNELGIGMPKSQV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + + + +P + ++ Sbjct: 209 CIFGWEELELEVVRDANNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQDM- 267 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++ ++I G F +P ++ +EIN + T S + G+ Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPEDGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSAML 325 Score = 43.7 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 99/292 (33%), Gaps = 33/292 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL+ GF+ + D D S L L + +H G++ Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVL-AIHDKEKPVGVIAQFGGQT 640 Query: 72 -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122 L+ + + L+ D+ + ++ G+P+ + + ++ + Sbjct: 641 PLNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALEIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ D+ + + + + +LI+++++ Sbjct: 701 RIGYPVMVRPSYVLGGRGMEIVHDDEMMRVYMSAAVGVTPDRPILIDRFLN---HATECE 757 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241 DA D VP + S +S +LP+K + ++ + + Sbjct: 758 ADAISDGEHCFVPAVMEHIELAGVHSGDSACILPSKNLSEKQVATIKEYTKKIAVEMNVK 817 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ + V+ LE N + T P ++ + ++ ++ Sbjct: 818 GLMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCSINMVKIATEII 863 >gi|332140821|ref|YP_004426559.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327550843|gb|AEA97561.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 1073 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + +LE + A + ++ R Q + + G+ + Sbjct: 89 TMGGQTALNCALELDKHGVLEEFGCELIGATADAIDKAENRERFDQAMKNIGLECPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D I P +I+P G + + + ++LLI++ Sbjct: 149 AHSMDEAHDVLSRIGFPCIIRPSFTMGGTGGGIAYNIDEFNEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVDPKTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A +P Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + T + A ++ + + P ++ + Sbjct: 642 GGQTPLKLARALEAAGVPVIGTSPEAIDRAEDRERFQQMVNKLNLKQPANATVTNVEQAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ + + L ++ ++ +L+++++D IE+ Sbjct: 702 TMAEEIGFPLVVRPSYVLGGRAMEIVYDIKDLKRYLNEAVKVSNDAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P DI ++ Sbjct: 762 DIDAICDGKEVVIGGIMEHIEQAG---VHSGDSACSLPPHSLPKDIQDVMREQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +V+ +E+N + T P ++ G ++ Sbjct: 819 LGVVGLMNTQFAI--KDGEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 866 >gi|300715268|ref|YP_003740071.1| carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661] gi|299061104|emb|CAX58211.1| Carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661] Length = 1074 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + Q +LE + + A + D+ R + + S G+ Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVAMIGATADAIDKAEDRQRFDKAMKSIGLDTARSGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEAYAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPANGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ + Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLKQPANSTVTAIEQAVEKAAV 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + + ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDIDLKRYFQNAVAVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|294651181|ref|ZP_06728513.1| carbamoyl-phosphate synthase large subunit [Acinetobacter haemolyticus ATCC 19194] gi|292822934|gb|EFF81805.1| carbamoyl-phosphate synthase large subunit [Acinetobacter haemolyticus ATCC 19194] Length = 1077 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P +I+P G + + + + QLLI++ Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++ E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|226951539|ref|ZP_03822003.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC 27244] gi|226837731|gb|EEH70114.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC 27244] Length = 1077 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P +I+P G + + + + QLLI++ Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++ E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|58337650|ref|YP_194235.1| carbamoyl phosphate synthase large subunit [Lactobacillus acidophilus NCFM] gi|75357469|sp|Q5FJC0|CARB_LACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|58254967|gb|AAV43204.1| carbamoyl-phosphate synthase, large subunit (glutamine-hydrolyzing) [Lactobacillus acidophilus NCFM] Length = 1062 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V +P+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A P + + +++ Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + + L +L++ Y+DG E Sbjct: 697 AEKLGYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P +I +++ + + C Sbjct: 757 AISDGYDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEIKEKITEVTKKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRIIRQEYPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G IL+ L I + + + + D+ + K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCKELGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|225182118|ref|ZP_03735545.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] gi|225167181|gb|EEG76005.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] Length = 1066 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + + + ++ +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPGMADATYIEPLNVKRLTEIIEKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + Q ILE + + A D++ K+ ++ G+ + S Sbjct: 89 NLGGQSALNLSIELNKQGILEKYGVKVIGVQLDAIERGEDRIAFKESMNKLGIEMARSEP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P V++P G ++ + + + S + Q+LIE+ Sbjct: 149 AYSVEEAVEIAKELGFPVVVRPAYTMGGAGGGLVYNVEELESIAARGISASMVGQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + ++ + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDSKGQMITVCFIENVDP-VGVHTGDSFCTAPMLTISEEVQQRLQKH 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +A+G G + F DP + ++ +EIN + T S + G+ L+ Sbjct: 268 SYDIVEAVGVIGGTNVQFAHDPKTGRIVVIEINPR---TSRSS-ALASKATGFPIA-LIS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 42.6 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 29/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V + KP G Sbjct: 580 ALRDMGYETIIVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKEKPLGVIVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + E + I T + A D+ R+ + +P ++ Sbjct: 640 LNIAGELAEEGVRILGTSLDAIDLAEDRDRFRAVMEKLNIPMPEAGMASNLSEALEIAGK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ + + + + +L+++++ Sbjct: 700 IGYPLMVRPSYVLGGRGMEVVHDEDMLRQYIQAAVDITPQRPILLDKFLA--NAIEAEAD 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 S + Y +S ++ + P I + + Q + G+ Sbjct: 758 AISNGKEVFVPAVMEHIEYAGIHSGDSACVIPPISIGEGHLETINEYTKKIAQELQVVGL 817 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + V+ LE N + T P ++ S L + Sbjct: 818 MNMQYAI--SNGNVYVLEANPRASRT----VPIVSKVCNISMARLATEI 860 >gi|254361688|ref|ZP_04977825.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia haemolytica PHL213] gi|261491742|ref|ZP_05988322.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495508|ref|ZP_05991955.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093210|gb|EDN74221.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia haemolytica PHL213] gi|261308842|gb|EEY10098.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312581|gb|EEY13704.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1068 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + ++V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + F + P +I+P G + + + +LLIEQ Sbjct: 149 CHSFEEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILE 73 AL +AG++ + D D S L L + ++ +G Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRVENPWGVIVHYGGQTP 641 Query: 74 LL----------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 L I T + + +A ++ + P + + + Sbjct: 642 LKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLKQPANRTARNALEAVALANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ D+ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + S+ + + LD ++ A +G +G Sbjct: 762 CDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGHVLDEIRKQTNAMAFA---LGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QNEVVYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861 >gi|294634969|ref|ZP_06713486.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda ATCC 23685] gi|291091568|gb|EFE24129.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda ATCC 23685] Length = 1073 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R Q + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEALAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVEQPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQ 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I E++R A + RG Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLALELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|268317551|ref|YP_003291270.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus DSM 4252] gi|262335085|gb|ACY48882.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus DSM 4252] Length = 946 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A AL G++V ++ + S+ ++ +PD Sbjct: 29 SGSQAARALRKEGYEVILVNSNPATIMTDPITADRVYLQELTPESIRRIVEKERPDAVLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + E + + I A ++ D+ + + ++ G+ S Sbjct: 89 TMGGQTALNLAAQLHEEGFWEAMGVEIIGVDIEAIQITEDRQKFRDLMEQIGIDQARSRT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + L P VI+P G ++ + + + + Q+LIE Sbjct: 149 ARSLLEAKEILQELGGLPVVIRPSFTLGGTGGGIVWTMEEFDRKVTRGLELSPVHQVLIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + V G + + + D I P + + + + Sbjct: 209 ESVYGWKEYELELLRDANDNVIIVCPIENLDPMGVHTGDSITVAPAQTLTDKQYQRMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G F +P + ++ +EIN P M+ S + GY ++ Sbjct: 269 AIKMMRSIGKFAGGCNVQFAVEPHTGRMIAVEIN--PRMSRSS--ALASKATGYPIAKVA 324 Query: 290 LWM 292 + Sbjct: 325 ARL 327 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 87/295 (29%), Gaps = 36/295 (12%) Query: 20 KACASALEDAGFKVSQID-------VDRSVGLVL------------------AHLKPDLA 54 +A ++ G++ I+ D V L H K Sbjct: 582 HGVLAA-KEMGYEAIMINCNPETVSTDFDVADKLYFEPVFWERVLDIIEHENRHGKLKGV 640 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 L G + + I T ++ A K + P + Sbjct: 641 IVQLGGQTALKLARKLHEHGIPILGTSFPMMDLAEERSKFSALLRELEIPYPPYGAARTV 700 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173 ++ I P +I+P G+ + + + + +++L++ +++ Sbjct: 701 AEAVEVAERIGYPILIRPSYVLGGQGMRIAINKEEVERYVRNILKLLPDNEILLDLFLEN 760 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 GIE+ D + + +S ++ + P + ++ ++R Sbjct: 761 GIEVDVDAACDGEEVWIAGIMQHIEPAG---VHSGDSTAVLPPFSLSEEVLNTIRRYTED 817 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G+ + V+ +E N + T P +A G ++ Sbjct: 818 IARRLQVVGLINVQMVV--KDNVVYVIEANPRASRT----MPFVAKATGVPVAKI 866 >gi|327399335|ref|YP_004340204.1| carbamoyl-phosphate synthase large subunit [Hippea maritima DSM 10411] gi|327181964|gb|AEA34145.1| carbamoyl-phosphate synthase, large subunit [Hippea maritima DSM 10411] Length = 1068 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 91/298 (30%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + ++A +PD Sbjct: 29 SGTQACKALKNEGYEIVLVNSNPATIMTDPMLADKTYIEPITVEFLEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + L+ + + + D+ KQ ++ G+ V S Sbjct: 89 TLGGQTALNAAMDLHKAGVLDRYGVELIGANAQTIERAEDRELFKQAMNEIGLKVPASGV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G V + + + +++LIEQ Sbjct: 149 AHSLSEAWEIVNAIHFPVIIRPSFTLGGTGAGVAYNKEEFEEVVKWGLEQSPVNEVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEFELEVMRDKKDNVFIICSIENFDPMGIHTGDSITIAPAQTLTDKEYQILRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + + +E+N P ++ S + G+ + Sbjct: 269 IDIIRKVGVETGGSNIQFAVNPENGEFVVIEMN--PRVSRSS--ALASKATGFPIAKF 322 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 99/286 (34%), Gaps = 24/286 (8%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 S++ ++S + F+ V ++ + KP+ G + Sbjct: 597 STDYDIS-----------DRLYFEPLVF---EDVMNIIENEKPEGVIVQFGGQTPLKLSL 642 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 ++I T + A + R P ++ + P Sbjct: 643 PLKNAGVKILGTDPKSIDIAEDRELFRELIKKLDLLQPESGIAHSKEEAIEVATRVGYPV 702 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASL 187 +++P +++I ++ + + ++ LL++++ D IE+ + D Sbjct: 703 LVRPSYVLGGRAMMIIFNEEQLRQYVDEAVQVTGERPLLVDKFLEDAIEVDVDAVSDGED 762 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 V + + +S ++ + P + +I E++R L + + +G+ Sbjct: 763 TVVAAVMEHIEAAG---VHSGDSACSIPPRTLKKEIVSEIKRQTRLLAKELNVKGLINIQ 819 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F + +++ LE+N + T P ++ G + ++ ++ Sbjct: 820 FAV--KNDRIYILEVNPRASRT----VPFVSKATGVHWAKIATQLI 859 >gi|303242221|ref|ZP_07328709.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio cellulolyticus CD2] gi|302590209|gb|EFL59969.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio cellulolyticus CD2] Length = 1074 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G++V ++ + + + ++ +PD Sbjct: 29 SGTQACKALRKLGYQVILVNSNPATIMTDPGMADATYIEPLNVPRLTEIIDKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + +L+ ++ + A D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLCSELAKAGVLDKYDVKVIGVQLDAIERGEDRIAFKETMKRLGIEMPQSEP 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ + + + + S + Q+L+E+ Sbjct: 149 AYTVEEAKEIAKKLGFPVVIRPAYTMGGTGGGLVYNMEELEVVAGRGISASMVGQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + + + + + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDPMGVHTGDSFCSAPM-LTISTELQQRLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +AI G + F DP + +V +EIN + T S + G+ L+ Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322 Query: 291 WMV 293 ++ Sbjct: 323 SLL 325 Score = 39.9 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP G + + + +++ T + + Sbjct: 606 DKLYFEPLTV---EDVLSIYEKEKPLGIIVQFGGQTPLNIASELVRAGVKVLGTTTDAID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ R +P + + I P +++P G+ VI Sbjct: 663 LAEDRDRFRIMMEKLEIPMPESGMASNMEQAVKIANRIGYPLMVRPSYVLGGRGMEVIHD 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + +LI++++D DA D ++ VP + Sbjct: 723 EEMLKQYVEAAVDVTPERPILIDKFLDN---AVEAEADAISDGKDVFVPAVMEHIELAGI 779 Query: 207 SSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S V+P + + +++ + + G+ + + KV+ LE N + Sbjct: 780 HSGDSACVIPTISIPEKHLVTIRKYTEQIAKELNVIGLMNMQYAI--ANDKVYVLEANPR 837 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ + + Sbjct: 838 ASRT----VPLVSKVCNIKMAHIATEL 860 >gi|261326861|emb|CBH09834.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 771 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 27 EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + +++ D R V ++ D+ FN+ G E +LE LE Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDGGKDEKRAGIDVLEALEEHNAA 302 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138 S +V+ + P+ ++ T + P ++K L G +S Sbjct: 303 FTGTDSRSFEPSKIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLSGYAS 362 Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 +GI + ++ + + + L+E+++ G E T D+ Sbjct: 363 VGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKVFRPL 422 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA-----------IGCRGISRS 246 F + + + + + + + G R Sbjct: 423 MFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVGYGRV 482 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF DP V++LEIN GM S G F +L+ Sbjct: 483 DFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLM 517 >gi|72386711|ref|XP_843780.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359829|gb|AAX80258.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800312|gb|AAZ10221.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 771 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 28/283 (9%) Query: 27 EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + +++ D R V ++ D+ FN+ G E +LE LE Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDGGKDEKRAGIDVLEALEEHNAA 302 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138 S +V+ + P+ ++ T + P ++K L G +S Sbjct: 303 FTGTDSRSFEPSKIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLSGYAS 362 Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 +GI + ++ + + + L+E+++ G E T D+ Sbjct: 363 VGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKVFRPL 422 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA-----------IGCRGISRS 246 F + + + + + + + G R Sbjct: 423 MFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVGYGRV 482 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 DF DP V++LEIN GM S G F +L+ Sbjct: 483 DFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLM 517 >gi|312884384|ref|ZP_07744090.1| carbamoyl phosphate synthase large subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309367967|gb|EFP95513.1| carbamoyl phosphate synthase large subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 1074 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 83/302 (27%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + +E+ + + A + P + Sbjct: 89 TMGGQTALNCALDLEKYGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEQPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ +D Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTTMEQAIDKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMRGQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|253988043|ref|YP_003039399.1| carbamoyl phosphate synthase large subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779493|emb|CAQ82654.1| carbamoyl-phosphate synthase large chain [Photorhabdus asymbiotica] Length = 1074 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L+ + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELECQGVLKEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAEKVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 96/289 (33%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + A ++ + P ++ ++ ++ Sbjct: 648 LKLARELEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPANATVTTIDRAVEKGNV 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNDEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867 >gi|261856156|ref|YP_003263439.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus neapolitanus c2] gi|261836625|gb|ACX96392.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus neapolitanus c2] Length = 1077 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 104/318 (32%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGYRVILINSNPATIMTDPGMADATYVEPINWETVAAIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + A ++ D+ R ++ ++ G+ S++ Sbjct: 89 TMGGQTALNCALDLARNGVLEKFNCELIGASEDAIDMAEDRERFREAMADIGLSTPSSVV 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ D+ + P +I+P G + + + + + +LLIEQ Sbjct: 149 VHSLEEAFDALSDLGFPVIIRPSFTMGGSGGGIAYNREEYEEIVRRGLDLSPTSELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + + +E+N P ++ S FP A Sbjct: 269 LAVLRKIGVETGGSNVQFAVNPENGAMIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWMVEDAS 297 GY+ EL + + A+ Sbjct: 327 AVGYTLDELRNEITQGAT 344 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D+ V ++ KP G Sbjct: 589 ALREDGFETIMVNCNPETVSTDYDISDRLYFESLTLEDVLEIIDVEKPKGVIVQFGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I T + A ++ ++ P + ++ Sbjct: 649 LKLARDLEKAGAPIIGTTPDAIDRAEDRERFQAMISELGLKQPPNRTARSTDEAINLAAQ 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ ++ + + + ++ +L+++++D E+ + Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHNEEGLKRYMRDAVKASNDSPVLLDRFLDDATEMDIDAV 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + + EV+ +A+ G Sbjct: 769 CDGETVVIGGLMEHIEMAG---VHSGDSACSLPPYTVAAPVLAEVRAQVTAMAKALNVVG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + ++F +E+N + T P ++ G ++ Sbjct: 826 LMNTQ--VAIQGNEIFIIEVNPRASRT----VPFVSKAVGIPLAKIAAR 868 >gi|168015903|ref|XP_001760489.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688186|gb|EDQ74564.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1117 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + V VL +PD Sbjct: 48 SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 107 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ KQ ++ GV PS + Sbjct: 108 TMGGQTALNLACALAESGVLDKYNVELIGAKLDAIQKAEDRDLFKQAMAKIGVKTPPSGI 167 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + P +I+P G + + + + Q+L+E Sbjct: 168 AHTLDECFVIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLNASINSQVLVE 227 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + S + + + + + Sbjct: 228 KSLLGWKEYELEVMRDLADNVVIICSIENIDSMGVHTGDSITVAPAQTLTDKEYQRLRDQ 287 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P +V +E+N P ++ S + G+ ++ Sbjct: 288 SVAIIREIGVECGGSNVQFAVNPKDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 343 Query: 290 LWM 292 + Sbjct: 344 AKL 346 >gi|13507078|gb|AAK28428.1|AF251259_1 D-alanine-D-X ligase VanD4 [Enterococcus faecium] Length = 210 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 10/213 (4%) Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 EDG +Q +LEL IPY I +S + MDK + VV + G+ V ++ + Sbjct: 1 EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAET 60 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 +S P +KP + GSS G+ + + + + + ++ + ++L+E+ V G E+ C ++G Sbjct: 61 LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILG 118 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQ 236 + + +T + + + +PA +P ++ +++Q A ++ Sbjct: 119 NGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYR 178 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +GCRG++R D + E+N PG T Sbjct: 179 VLGCRGLARIDLFLRE-DGSIVLNEVNTMPGFT 210 >gi|298530534|ref|ZP_07017936.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509908|gb|EFI33812.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D +V ++A KPD Sbjct: 29 SGTQALKALKEEGYQVVLVNSNPATIMTDPDLADQTYIEPIEPDTVARIIAREKPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + +LE + + + + + + ++ + + G+ V S Sbjct: 89 TLGGQTGLNTAVALSENGVLEKYGVELIGASLPVIQKAESREQFRRAMENIGLKVPKSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I+ P +I+P G + + + S + ++++E+ Sbjct: 149 ARNMDEARQWTSTIAFPIIIRPAYTLGGTGGGIAYNLEDLEEKAAYGLSCSMTHEIMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEFELEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPSQTLTDREYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +E+N P ++ S + G+ ++ Sbjct: 269 LDIMREIGVETGGSNVQFAVNPDDGDLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 81/253 (32%), Gaps = 10/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KP+ G + V + + I T + A ++ ++ Sbjct: 628 EDVMNIIEFEKPEGVIVQFGGQTPLNLAVPLLQAGVPIIGTSPDSIDRAEDRERFQALIA 687 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + I P V++P + ++ ++ + Sbjct: 688 KLGLMQPANGTARSIEEARIIAADIGYPVVVRPSYVLGGRAMEIVYDEEHLITYFKNHVV 747 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 +L++++++G IE+ + D + + +S ++ + P Sbjct: 748 VAPEHPILLDKFLEGAIEVDVDALSDGQDTYVAGIMEHIEEAG---VHSGDSACVIPPHT 804 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I D+ +E++ + + G+ F +V+ LE+N + T P ++ Sbjct: 805 IEQDLLREIEAETISLARELSVVGLINIQFAI--KEGRVYILEVNPRASRT----VPFVS 858 Query: 279 AYAGYSFRELLLW 291 +L Sbjct: 859 KATSVPLAKLATR 871 >gi|312978335|ref|ZP_07790078.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus CTV-05] gi|310894854|gb|EFQ43925.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus CTV-05] Length = 1062 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKGELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|295693231|ref|YP_003601841.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus ST1] gi|295031337|emb|CBL50816.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus ST1] Length = 1062 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|262046684|ref|ZP_06019645.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus MV-3A-US] gi|260573133|gb|EEX29692.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus MV-3A-US] Length = 1062 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|256843498|ref|ZP_05548986.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus 125-2-CHN] gi|293380106|ref|ZP_06626195.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus 214-1] gi|256614918|gb|EEU20119.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus 125-2-CHN] gi|290923319|gb|EFE00233.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus crispatus 214-1] Length = 1062 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|227878920|ref|ZP_03996823.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256849742|ref|ZP_05555173.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus MV-1A-US] gi|227861466|gb|EEJ69082.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256713231|gb|EEU28221.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus MV-1A-US] Length = 1062 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|71082750|ref|YP_265469.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter ubique HTCC1062] gi|71061863|gb|AAZ20866.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter ubique HTCC1062] Length = 1074 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+D G+KV I+ + + +L KPD Sbjct: 29 SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + ++A L+ +I + A + + D+ + ++ + G+ + S Sbjct: 89 TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + R + I P +I+P LG + K ++ + + +Q+LIE+ Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVNQILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D I + + + + Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 35/293 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------------H 59 AL+D+GF+ I D D S L LK + +N++ Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNIIKKEQQKGNLVGIIAQFG 646 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G L I T + A D+ R + + Sbjct: 647 GQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAIQ 706 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178 I P +++P + ++ + + + ++ + +LI++++ +E+ Sbjct: 707 IAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEDNPILIDKFISHAMEVD 766 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + ++ + P I + E++ A+ Sbjct: 767 VDAISDGKQVFVAGIMQHIEEAGIHSG---DSACCLPPVSIKPKLISEIEIQTKKLALAL 823 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G F + +++ +E+N + T P ++ G ++ Sbjct: 824 NVKGFMNIQFAI--KNDEIYVIEVNPRASRT----VPFVSKAKGLPLAKIASR 870 >gi|161504813|ref|YP_001571925.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866160|gb|ABX22783.1| hypothetical protein SARI_02937 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1074 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L+ + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLKAFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEDAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|2231989|gb|AAB62176.1| vancomycin resistance protein B [Enterococcus faecium] gi|2231991|gb|AAB62177.1| vancomycin resistance protein B [Enterococcus faecium] gi|2231993|gb|AAB62178.1| vancomycin resistance protein B [Enterococcus faecium] Length = 267 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 105/269 (39%), Gaps = 43/269 (15%) Query: 30 GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55 F I + ++ L + D+AF Sbjct: 1 KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAF 60 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 VLHG GEDG +Q + L IPY I +SA MDK + + + G+ V ++++ Sbjct: 61 PVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQIIDK 120 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 ++ P +KP + GSS G+ + + + + ++ + ++LIEQ + G Sbjct: 121 GDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILIEQAISGC 178 Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ C VMG+ + E + S N+ +PA IP++ VQ Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQ 238 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 A ++ +GCRG++R D V Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267 >gi|290474746|ref|YP_003467626.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii SS-2004] gi|289174059|emb|CBJ80846.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii SS-2004] Length = 1074 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLTEFSVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPTGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ + Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIEQAVEKGNG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867 >gi|325681229|ref|ZP_08160759.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8] gi|324107151|gb|EGC01437.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8] Length = 1074 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 40/306 (13%), Positives = 93/306 (30%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMKELGIGMPKSQV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + + +P + ++ + Sbjct: 209 CIFGWEELELEVVRDAKNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++ ++I G F +P ++ +EIN + T S + G+ Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPEDGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSAML 325 Score = 43.7 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A D R+ +P + + + Sbjct: 642 LNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALAIANK 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ D+ + + + + +LI+++++ Sbjct: 702 IGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLN---HATECEA 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D VP + S +S +LP+K +I ++ + +G Sbjct: 759 DAISDGEHCFVPAVMEHIELAGVHSGDSACILPSKNLSPEIVATIKEYTKKIAVEMNVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + V+ LE N + T P ++ + ++ ++ Sbjct: 819 LMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCSINMVKIATEII 863 >gi|254448823|ref|ZP_05062279.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium HTCC5015] gi|198261513|gb|EDY85802.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium HTCC5015] Length = 1076 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + R++ ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWRNIEQIIAEERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + A + D+ + + + G+ + + Sbjct: 89 TMGGQTALNTALDLDKHGVLEKYGVEMIGASKEAIDTAEDRDKFRIAMDEIGLDSTRAFM 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + Q + + ++ +E+ Sbjct: 149 AKTMEDAEKALAEIGFPIIIRPSFTMGGSGGGIAYNKQEFAEIVRNGLELSPVTEIQLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SILGWKEYEMEVVRDRADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLRRIGVETGGSNVQFAVNPEDGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 99/321 (30%), Gaps = 44/321 (13%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A A+ + G++ + D D Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAAFAMREDGYETIMVNCNPETVSTDYDTSD 615 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP+ G + I T + A Sbjct: 616 RLFFEPLTLEDVLEIIELEKPEGVIVQYGGQTPLKLARDLEAAGVPIIGTTPDSIDLAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ ++ P + +D I P V++P + ++ + + Sbjct: 676 RERFQAMLNKLGLKQPPNRTARNPDEAVDLADEIGYPLVVRPSYVLGGRAMEIVSDREDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ S ++ +L++++++ + V + + + +S + Sbjct: 736 NRYMTEAVSVSNDSPVLLDRFLN-DAIEVDVDAICDAEGNVLIGGVMEHIEEAGVHSGDS 794 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + E+++ + + G+ + F ++ LE+N + T Sbjct: 795 ACSLPPYTLDQKTQDELRQQVADMARELNVVGLMNTQFAI--QGDNIYVLEVNPRASRT- 851 Query: 271 VSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 852 ---VPFVSKACGQPLAKIAAR 869 >gi|225850411|ref|YP_002730645.1| carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) [Persephonella marina EX-H1] gi|225645104|gb|ACO03290.1| carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) [Persephonella marina EX-H1] Length = 561 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + + ++ +PD Sbjct: 29 SGTQGAKALKEEGYEVILVNSNPATIMTDPEVADKTYIEPLITPVIEKIIERERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + IL+ + + A + D+ K+ + G+ + S Sbjct: 89 TLGGQTALNLAVDLYEKGILDKYNVKMIGANYEAIKKAEDRELFKEAMEKIGLEMPKSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + ++L+E+ Sbjct: 149 VKSLAEAEEIIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYYKVKAGLDASPVHEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEFEMEVMRDKNDNCVIICSIENLDPMGIHTGDSITIAPAMTLTDKEYQMLRDYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREIGVETGGSNVQFSQNPETGQFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|317163468|gb|ADV07009.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 1071 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGMLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 10/169 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P V++P + ++ +++ + ++ + +L++ + + IE+ Sbjct: 699 AEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDV 758 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + + + P + +I E++R A+G Sbjct: 759 DCVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F VF LE+N + T P ++ G ++ Sbjct: 816 VVGLMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|222154052|gb|ACM47216.1| plastid carbamoylphosphate synthetase large subunit [Medicago truncatula] Length = 1167 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V VL +PD Sbjct: 104 SGTQACKALREEGYEVILINSNPATIMTDPETADRTYITPMTPELVEQVLESERPDALLP 163 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V LE + + + A + D+ KQ + + G+ PS Sbjct: 164 TMGGQTALNLAVALAESGALEKYGVELIGAKLEAIKKAEDRELFKQAMKNIGIKTPPSGT 223 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M + I P +++P G + + + + + +Q+LIE+ Sbjct: 224 CSTLEECMQIANQIEFPLIVRPAFTLGGTGGGIAYNREDLMEICKAGIAASLTNQVLIEK 283 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 284 SLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYS 343 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 344 IAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMAA 399 Query: 291 WM 292 + Sbjct: 400 KL 401 >gi|289808020|ref|ZP_06538649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 54 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48 +AVL+GG S+ER+VSL+SG A + L + G +D L Sbjct: 5 IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKA 52 >gi|325206768|gb|ADZ02221.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M04-240196] Length = 1071 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|261393196|emb|CAX50815.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Neisseria meningitidis 8013] Length = 1071 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|254672417|emb|CBA05752.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis alpha275] Length = 1071 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|325127537|gb|EGC50462.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis N1568] Length = 1071 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNSS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|283835095|ref|ZP_06354836.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae ATCC 29220] gi|291069392|gb|EFE07501.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae ATCC 29220] Length = 1074 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|297568880|ref|YP_003690224.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924795|gb|ADH85605.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1073 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + V V+ +PD Sbjct: 29 SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIERERPDALLP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ ++ A D R VP Sbjct: 89 TLGGQTGLNTAIRVAEMGVLEKYGVELLAARIDVIRKAEGRDSFREAMRKIGLKVPESVI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + Q + + ++++E+ Sbjct: 149 IHTIAEAKTAAVEIGFPVIVRPSFTLGGTGGGIAYNQQELEDICEHGLDLSINSEVMLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYELEVMRDKNDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQLMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + + D D V ++ KP+ G Sbjct: 588 ALRELGVESIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNIIEKEKPEGVIVQFGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + I T + A ++ + + P + Sbjct: 648 LNLAVPLAKAGVPIIGTSPDSIDRAEDRERFQQFLQKLNLRQPANGLARQAEEAIKVARD 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + + + + +LI+++ D IE+ + Sbjct: 708 IGYPVVVRPSYVLGGRAMRIVYNERELNNYIATAVDVSPEHPILIDKFLKDAIEVDVDAV 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + ++ +E++ + + +G Sbjct: 768 SDGETTIIGGIMQHIEEAGIHSG---DSACVMPPHTLAPEMLEEIKTASKAMAAELKVKG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +F LE+N + T P ++ G +L Sbjct: 825 LMNVQFAV--KDNTLFVLEVNPRASRT----VPFVSKATGVPLAKLATK 867 >gi|238911126|ref|ZP_04654963.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|224581907|ref|YP_002635705.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466434|gb|ACN44264.1| carbamoyl-phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|200388769|ref|ZP_03215381.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605867|gb|EDZ04412.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|168243534|ref|ZP_02668466.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447884|ref|YP_002044034.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406188|gb|ACF66407.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337398|gb|EDZ24162.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|204927019|ref|ZP_03218221.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323684|gb|EDZ08879.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|168820960|ref|ZP_02832960.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197250511|ref|YP_002145050.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214214|gb|ACH51611.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205342414|gb|EDZ29178.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084305|emb|CBY94098.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|168230330|ref|ZP_02655388.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472177|ref|ZP_03078161.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458541|gb|EDX47380.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334983|gb|EDZ21747.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|198241932|ref|YP_002214022.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936448|gb|ACH73781.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621766|gb|EGE28111.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|167550756|ref|ZP_02344513.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324441|gb|EDZ12280.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|161612394|ref|YP_001586359.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234815|ref|ZP_02659873.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168262261|ref|ZP_02684234.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464396|ref|ZP_02698299.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194735374|ref|YP_002113082.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|205351409|ref|YP_002225210.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855581|ref|YP_002242232.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|161361758|gb|ABX65526.1| hypothetical protein SPAB_00083 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710876|gb|ACF90097.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632923|gb|EDX51377.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197291819|gb|EDY31169.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205271190|emb|CAR35977.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205348866|gb|EDZ35497.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707384|emb|CAR31657.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|322615889|gb|EFY12806.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620674|gb|EFY17534.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623975|gb|EFY20812.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627423|gb|EFY24214.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630730|gb|EFY27494.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638050|gb|EFY34751.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640534|gb|EFY37185.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647674|gb|EFY44159.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648381|gb|EFY44836.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656942|gb|EFY53228.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657347|gb|EFY53619.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663667|gb|EFY59867.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666500|gb|EFY62678.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672341|gb|EFY68453.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676347|gb|EFY72418.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679560|gb|EFY75605.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686111|gb|EFY82095.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194955|gb|EFZ80141.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200136|gb|EFZ85223.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201043|gb|EFZ86112.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209440|gb|EFZ94373.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212308|gb|EFZ97132.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216613|gb|EGA01339.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219343|gb|EGA03829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225759|gb|EGA09979.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228700|gb|EGA12829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236686|gb|EGA20762.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239813|gb|EGA23860.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242139|gb|EGA26168.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249436|gb|EGA33352.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252229|gb|EGA36080.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256680|gb|EGA40410.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261286|gb|EGA44873.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265534|gb|EGA49030.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271678|gb|EGA55096.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326626431|gb|EGE32774.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|62178631|ref|YP_215048.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126264|gb|AAX63967.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713083|gb|EFZ04654.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLCRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|56412339|ref|YP_149414.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361276|ref|YP_002140911.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126596|gb|AAV76102.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092751|emb|CAR58175.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|16763457|ref|NP_459072.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989925|ref|ZP_02571025.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262871|ref|ZP_03162945.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20143903|sp|P14846|CARB_SALTY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|16418563|gb|AAL19031.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241126|gb|EDY23746.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331328|gb|EDZ18092.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245300|emb|CBG23086.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991730|gb|ACY86615.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156698|emb|CBW16169.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911037|dbj|BAJ35011.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222364|gb|EFX47436.1| Carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128385|gb|ADX15815.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987019|gb|AEF06002.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|16759060|ref|NP_454677.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140610|ref|NP_803952.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163014|ref|ZP_03348724.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289826208|ref|ZP_06545320.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095513|sp|Q8Z9L7|CARB_SALTI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|25293883|pir||AE0510 carbamoyl-phosphate synthase large chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501350|emb|CAD01221.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136234|gb|AAO67801.1| carbamoyl-phosphate synthase large chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1075 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|320647436|gb|EFX16231.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H- str. 493-89] gi|320652770|gb|EFX21008.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H- str. H 2687] Length = 1073 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD+ Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDVVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|311695968|gb|ADP98841.1| carbamoyl-phosphate synthase, large subunit [marine bacterium HP15] Length = 1072 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWKTVEKIIEKEQPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D ILE + + + D+ R + + G+ + Sbjct: 89 TMGGQTALNCALDLERHGILEKHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRATI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + + ++LLI++ Sbjct: 149 AHSMEEAWKVADDIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGMNPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 102/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42 + V+ GG + G+ +AL + G++ I D D S Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L + + ++H G + I T + A Sbjct: 615 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + + I P V++P + ++ ++ + Sbjct: 675 RERFQQMITRLGLKQPENATVRSHEEGILAAREIGYPLVVRPSYVLGGRAMEIVYDEEEL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L++ +++ IE+ + D V + + +S Sbjct: 735 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGKDVVIGGIMQHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + + E++ + G+ + +++ +E+N + T Sbjct: 792 SACSLPPYTLSQQVQDEMRDAVKKMAIELDVVGLMNVQLAW--QDGEIYVIEVNPRASRT 849 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 850 ----VPFVSKAIGVSLAKVAAR 867 >gi|49183263|ref|YP_026515.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str. Sterne] gi|227812912|ref|YP_002812921.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684] gi|254686586|ref|ZP_05150445.1| putative D-ala D-ala ligase [Bacillus anthracis str. CNEVA-9066] gi|254734936|ref|ZP_05192648.1| putative D-ala D-ala ligase [Bacillus anthracis str. Western North America USA6153] gi|254739721|ref|ZP_05197414.1| putative D-ala D-ala ligase [Bacillus anthracis str. Kruger B] gi|254754908|ref|ZP_05206943.1| putative D-ala D-ala ligase [Bacillus anthracis str. Vollum] gi|254756951|ref|ZP_05208979.1| putative D-ala D-ala ligase [Bacillus anthracis str. Australia 94] gi|49177190|gb|AAT52566.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str. Sterne] gi|227007613|gb|ACP17356.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684] Length = 158 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 38/137 (27%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 7 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 67 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126 Query: 84 ILASALSMDKMRSKQVV 100 +LASA MDK+ K + Sbjct: 127 VLASAAGMDKVVMKNIF 143 >gi|65317671|ref|ZP_00390630.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes [Bacillus anthracis str. A2012] Length = 161 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 38/137 (27%) Query: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45 +L GG S+E +VSL + A AL F++ I + + Sbjct: 10 GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 69 Query: 46 ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83 D+ F +LHG GEDG VQ +LEL+ IPY +G Sbjct: 70 MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129 Query: 84 ILASALSMDKMRSKQVV 100 +LASA MDK+ K + Sbjct: 130 VLASAAGMDKVVMKNIF 146 >gi|296109365|ref|YP_003616314.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus infernus ME] gi|295434179|gb|ADG13350.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus infernus ME] Length = 1058 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 106/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V + D D + ++ +PD Sbjct: 29 SGSQACKALRKLGYEVVLVNSNPATIMTDTDMADRVYIEPLTSEVLEKIIEKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V+ IL+ ++ + + A D+ K+ GV V S Sbjct: 89 TLGGQTALNLAVELAEKGILDKYDVELIGANLEAIKRGEDRELFKECCKKAGVEVLRSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P V++P G + + + + + ++ +Q+LIE+ Sbjct: 149 VFSVDEALEFAEEIGYPIVVRPAFTLGGTGGGIAYNPEELKEIVSKGLEYSLKNQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + ++ + T + + Y++++ Sbjct: 209 SVLGWKEFEYEVIRDKNDNVIIICTIENMDPMG-VHTGDSITVAPAQTLSDEEYQKMRDY 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G S F +P ++ +E+N P ++ S + GY ++ Sbjct: 268 SIKIIRAVGVETGGSNIQFALNPKDGRIVAIEMN--PRVSRSS--ALASKATGYPIAKVA 323 Query: 290 LWM 292 + Sbjct: 324 AQL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 99/290 (34%), Gaps = 38/290 (13%) Query: 23 ASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGN 61 A+++ G++ + D D V ++ + KPD + G Sbjct: 576 IKAVQEEGYEAIMVNCNPETVSTDYDTADKLYFDPLYWEDVLNIVENEKPDGVIVQVGGQ 635 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--D 119 + + LE + + L+ D+ + +++ +P P+ + Sbjct: 636 T-----PLNLAKYLENYIIGTSKESIDLAEDREKFAKILEELNIPQPPNGIAYNEEEALK 690 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178 I P +++P + ++ ++ + + ++ + +LI+++ D E+ Sbjct: 691 IAKEIGYPVLVRPSYVLGGRAMRIVYNEEELKEYIKEAVEVSEEHPVLIDKFLEDATEVD 750 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + +S ++ + P + ++ + ++ + Sbjct: 751 VDAICDGESVLIGGIMEHIEEAG---VHSGDSACVIPPQTLSKEVIEIIKDYTRKIALKL 807 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ + KV+ LE N + T P ++ G ++ Sbjct: 808 NVKGLINIQYAI--KDDKVYVLEANPRASRT----VPFLSKAIGLPLAKI 851 >gi|152998030|ref|YP_001342865.1| carbamoyl-phosphate synthase large subunit [Marinomonas sp. MWYL1] gi|150838954|gb|ABR72930.1| carbamoyl-phosphate synthase, large subunit [Marinomonas sp. MWYL1] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + ++V ++ +PD Sbjct: 29 SGAQACKALREEGIRVILVNSNPATIMTDPVMADATYIEPVEWKTVEKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLEKYNVEMIGATADAIDKAEDRSRFDKAMRAIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEALKVQAEVGFPCIIRPSFTMGGTGGGIAYNMEEFDEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 89/294 (30%), Gaps = 31/294 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALGLREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRKEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G E + I T + A ++ +S P ++ Sbjct: 642 GGQTPLKIARALQNEGVPIIGTTPESIDRAEDRERFQSMIQRLGYKQPHNATVRSVDQAA 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 LI P V++P + ++ ++ + + + ++ +L++ +++ Sbjct: 702 AKAALIGYPLVVRPSYVLGGRAMEIVYNEKELMRYMTSAVKVSNDSPVLLDHFLNAAIEI 761 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V + + + S S P + ++ +++ + + Sbjct: 762 DIDCISDGHQVVIGGIMQHIEQAGVHSGDSACSLP--PYSLSKEVQDDIREMIKNMALEL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G G+ + +++ +E+N + T P ++ G S ++ + Sbjct: 820 GVVGLMNTQLAI--QDGEIYVIEVNPRASRT----VPFVSKCIGRSLAQVAALI 867 >gi|297617486|ref|YP_003702645.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus lipocalidus DSM 12680] gi|297145323|gb|ADI02080.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1072 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 103/296 (34%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ ++ + +S+ ++A +PD Sbjct: 29 SGTQACKALKKLGYEIVLVNSNPATIMTDPGIADTTYIEPLTVKSLAAIIAKERPDAVLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + Q +L+ + + A D+ K+ + G+ + S Sbjct: 89 NLGGQSGLNLVSELHKQGVLDKYGVKVIGVQVDAIEKGEDRTVFKETMERLGIEMPRSQA 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ + + + + + + Q+L+E+ Sbjct: 149 AYSVEEAEEIAKELGYPVVIRPAYTLGGTGGGLVYNLEELRTVVSRGLAASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + + I ++ + +Q Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSFCVAPM-LTISPELQERLQEY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A+ +AIG G + F DP + +V +EIN + T S + G+ Sbjct: 268 AYRVVEAIGVIGGTNIQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 319 Score = 43.3 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 88/290 (30%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ + D D V + KP G Sbjct: 580 ALKELGYETVMVNCNPETVSTDYDTSDKLYFEPVTVEDVLSIYEKEKPIGIIVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + A D+ R +P ++ Sbjct: 640 LNIAQELAAAGVRILGTTPDTIDLAEDRDRFRRMMESLGIPMPEAGMAANLEEALEVAAR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ ++ + + + +LI++++ Sbjct: 700 IGYPLMVRPSYVLGGRGMEIVYDEEMLRQYVTAAVGVTPERPILIDKFLSN---AVEAEA 756 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA + + VP + S +S V+P + + ++ + +G G Sbjct: 757 DAIANGKDAFVPAVMEHIELAGIHSGDSACVIPPVTIPERHLATIEDYTKKIARELGVVG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + KV+ LE N + T P ++ ++ + Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKVCNIPMAKIATEI 860 >gi|329120046|ref|ZP_08248716.1| carbamoyl-phosphate synthase, large subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463577|gb|EGF09895.1| carbamoyl-phosphate synthase, large subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1069 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|325143751|gb|EGC66068.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M01-240013] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|325141608|gb|EGC64072.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis 961-5945] gi|325197645|gb|ADY93101.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis G2136] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|325133501|gb|EGC56164.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M13399] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|325129512|gb|EGC52339.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis OX99.30304] gi|325135635|gb|EGC58252.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M0579] gi|325201504|gb|ADY96958.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M01-240149] gi|325207484|gb|ADZ02936.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis NZ-05/33] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|319409827|emb|CBY90135.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Neisseria meningitidis WUE 2594] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|319639060|ref|ZP_07993817.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102] gi|317399638|gb|EFV80302.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|313669076|ref|YP_004049360.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica ST-640] gi|313006538|emb|CBN88002.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica 020-06] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|309379471|emb|CBX21837.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSTEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|308389954|gb|ADO32274.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis alpha710] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|298370199|ref|ZP_06981515.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281659|gb|EFI23148.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|254671009|emb|CBA07784.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis alpha153] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|254804321|ref|YP_003082542.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis alpha14] gi|254667863|emb|CBA03922.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis alpha14] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEIDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|261379319|ref|ZP_05983892.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava NJ9703] gi|284797755|gb|EFC53102.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava NJ9703] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 99/294 (33%), Gaps = 36/294 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSTEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287 + F VF LE+N P ++ + P A AG S +E Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRTIPFVSKATGVPLAKVGARVMAGISLKE 870 >gi|261401908|ref|ZP_05988033.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica ATCC 23970] gi|269207923|gb|EEZ74378.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica ATCC 23970] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|225076110|ref|ZP_03719309.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens NRL30031/H210] gi|224952554|gb|EEG33763.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens NRL30031/H210] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|121634229|ref|YP_974474.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis FAM18] gi|161869361|ref|YP_001598528.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis 053442] gi|120865935|emb|CAM09672.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis FAM18] gi|161594914|gb|ABX72574.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis 053442] gi|325131499|gb|EGC54206.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M6190] gi|325137545|gb|EGC60127.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis ES14902] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|218767563|ref|YP_002342075.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] gi|22095531|sp|Q9JW02|CARB_NEIMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|121051571|emb|CAM07869.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis Z2491] Length = 1071 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|1750392|gb|AAB39256.1| carbamoylphosphate synthetase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1075 Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|262371952|ref|ZP_06065231.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii SH205] gi|262311977|gb|EEY93062.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii SH205] Length = 1077 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + A L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDANGILEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P +I+P G + + + + QLLI++ Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V ++ KP Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++ E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|40253001|dbj|BAD05864.1| putative D-Ala-D-Ala ligase [Streptomyces garyphalus] Length = 81 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G SR+DF D + LE+N PG+T S+ P A+ AG+++ +L +V A+ Sbjct: 22 FGPHTYSRADFRCDAA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 80 >gi|262044924|ref|ZP_06017966.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037651|gb|EEW38880.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1074 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLNLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + + +I ++ + RG Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|237729329|ref|ZP_04559810.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2] gi|226909058|gb|EEH94976.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2] Length = 1074 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|152968622|ref|YP_001333731.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893017|ref|YP_002917751.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae NTUH-K2044] gi|330009312|ref|ZP_08306503.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS 92-3] gi|150953471|gb|ABR75501.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545333|dbj|BAH61684.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|238774020|dbj|BAH66517.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae NTUH-K2044] gi|238774052|dbj|BAH66548.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae] gi|328534838|gb|EGF61382.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS 92-3] Length = 1074 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + + +I ++ + RG Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|322492477|emb|CBZ27752.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 868 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 15/250 (6%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +ID R+V ++ K D+ FN+ G E ++E LE S Sbjct: 353 KKIDSYRAVRKLVTSKKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 412 Query: 94 MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +++ VP + + + P ++K L G +S+GI + ++ Sbjct: 413 KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDNRCDTL 472 Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + L+E+++ G E T D F + Sbjct: 473 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 532 Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + Y + + G R DF D L+ + + Sbjct: 533 YFEKKWTMECGDQAYGFLASSDPAYTAITEMARNAFKYIMNGVGYGRVDFRIDELTGEPY 592 Query: 259 WLEINVQPGM 268 +LEIN GM Sbjct: 593 FLEINPNCGM 602 >gi|323497906|ref|ZP_08102915.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM 21326] gi|323316951|gb|EGA69953.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM 21326] Length = 1076 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIDQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|157147550|ref|YP_001454869.1| carbamoyl phosphate synthase large subunit [Citrobacter koseri ATCC BAA-895] gi|157084755|gb|ABV14433.1| hypothetical protein CKO_03350 [Citrobacter koseri ATCC BAA-895] Length = 1074 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867 >gi|84393222|ref|ZP_00991984.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus 12B01] gi|84376128|gb|EAP93014.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus 12B01] Length = 1076 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 97/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPTADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AIEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIAGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----VPFVSKATG 857 >gi|313904758|ref|ZP_07838131.1| carbamoyl-phosphate synthase, large subunit [Eubacterium cellulosolvens 6] gi|313470361|gb|EFR65690.1| carbamoyl-phosphate synthase, large subunit [Eubacterium cellulosolvens 6] Length = 1077 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 103/310 (33%), Gaps = 43/310 (13%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D+ + ++A +PD Sbjct: 29 SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADITYIEPLNVNRLEEIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K+ ++ + + S Sbjct: 89 NLGGQSGLNLCSELYKAGVLDKYSVQVIGVQVDAIERGEDRIEFKETMNKLHIDMPRSHE 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + +Q+LIE+ Sbjct: 149 AYSVEEAVKYADKLGYPVVVRPAYTMGGAGGGLVYNREELQTVASRGLQASLINQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I ++ ++Q Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVDP-VGVHTGDSFCVAPMLTISEELQAKLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS--------IFPEM---AA 279 A+ + IG G + F DP++ +V +EIN + T S FP A Sbjct: 268 AYRIVEHIGVIGGTNVQFAHDPVTDRVVVIEINPR---TSRSSALASKATGFPIALVSAK 324 Query: 280 -YAGYSFREL 288 +G + +L Sbjct: 325 LASGLTLADL 334 Score = 44.9 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 98/296 (33%), Gaps = 33/296 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + GF+ + D D V + KP Sbjct: 577 VHAALSLKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQF 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + ++I T ++ A D R+ +P + + Sbjct: 637 GGQTPLNLAASLKKNGVKILGTTPEVIDLAEDRDHFRAMMDKLGIPMPEAGMAVSVEEAI 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ H I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 697 ETAHKIGYPVMVRPSFVLGGRGMEVVYDDESMADYMKAAIGVTPDRPILIDRFLN---HA 753 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQA 237 DA D T VP + S +S ++P+K + + ++ + Sbjct: 754 MECEADAIADGTHAFVPAVMEHIELAGIHSGDSACIIPSKHIPEENLETIREYTRKIAEE 813 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + G+ + + KVF +E N + T P ++ AG + ++ Sbjct: 814 MHVVGLMNMQYAI--ENGKVFVIEANPRASRT----VPLVSKVAGIQMVPIATDII 863 >gi|325204812|gb|ADZ00266.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis M01-240355] Length = 1071 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGTQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|260773484|ref|ZP_05882400.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP 69.14] gi|260612623|gb|EEX37826.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP 69.14] Length = 1076 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLACPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYRVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLLQPENATVTTMEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|94266401|ref|ZP_01290098.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [delta proteobacterium MLMS-1] gi|94268346|ref|ZP_01291150.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [delta proteobacterium MLMS-1] gi|93451648|gb|EAT02437.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [delta proteobacterium MLMS-1] gi|93452996|gb|EAT03490.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [delta proteobacterium MLMS-1] Length = 1077 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + V V+ +PD Sbjct: 29 SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIEKERPDALLP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ ++ A D R VP Sbjct: 89 TLGGQTGLNTAIQVAEMGILEEYGVELLAARIDVIRKAEGRDSFREAMRKIGIKVPQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + Q + + + ++++E+ Sbjct: 149 IHTLSEAKAAAAEIGFPIIVRPSYTLGGTGGGIAYNQQELEKLCITGLDLSLNSEVMLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + + Sbjct: 209 SLLGWKEYELEVMRDNKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDREYQAMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 80/253 (31%), Gaps = 10/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ +P+ G + V + I T + A + + Sbjct: 624 EDVLNIIEKEQPEGVIVQFGGQTPLNLAVPLARAGVPILGTTPDSIDRAEDRQRFQQFLQ 683 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P + I P V++P + ++ ++ + + + Sbjct: 684 KLNLLQPANGLARSGDEALAVAKEIGYPVVVRPSYVLGGRAMRIVYNERDLNQYMTFAVE 743 Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +LI+++ D +E+ + D + + + ++ + P Sbjct: 744 ASPEHPVLIDKFLKDAVEVDVDAISDGDSAIIGGIMQHIEEAGIHSG---DSACVLPPHT 800 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + +E++ + + +G+ F R +F LE+N + T P ++ Sbjct: 801 LEPAMIEEIKEATRAMAKELRVKGLMNVQFAV--QDRTLFVLEVNPRASRT----VPFVS 854 Query: 279 AYAGYSFRELLLW 291 G +L Sbjct: 855 KATGVPLAKLATR 867 >gi|77360172|ref|YP_339747.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas haloplanktis TAC125] gi|76875083|emb|CAI86304.1| carbamoyl phosphate synthase, large subunit [Pseudoalteromonas haloplanktis TAC125] Length = 1072 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVEKIIEKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + +L + + A + ++ R + + G+ + Sbjct: 89 TMGGQTALNCALELDKHGVLAKHGVELIGATADAIDKAENRERFDTAMKNIGLECPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D I P +I+P G V + + + ++LLI++ Sbjct: 149 AHSMDEARDIITRIGLPCIIRPSFTMGGTGGGVAYNLEEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGINPEDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPVGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + + P ++ + Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLNLLQPENATVTSTEEAILKSVE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + + ++ ++ +L+++++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYMTEAVQASNEAPVLLDRFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + ++ +++ +G G Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHTLSQEVQDVMRKQVTDMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F V+ +E+N + T P ++ G + ++ Sbjct: 824 LMNTQFAV--KDGLVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866 >gi|86147368|ref|ZP_01065681.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222] gi|85834796|gb|EAQ52941.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222] Length = 1076 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 + G D +LE + + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIAGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857 >gi|163847334|ref|YP_001635378.1| carbamoyl-phosphate synthase large subunit [Chloroflexus aurantiacus J-10-fl] gi|222525180|ref|YP_002569651.1| carbamoyl-phosphate synthase large subunit [Chloroflexus sp. Y-400-fl] gi|163668623|gb|ABY34989.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus aurantiacus J-10-fl] gi|222449059|gb|ACM53325.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus sp. Y-400-fl] Length = 1097 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++A +PD Sbjct: 29 SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ILE + + + A ++ D+ R K + G+ V S Sbjct: 89 TVGGQTALNLAVALHEAGILEKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + Q+L+E+ Sbjct: 149 ATTLEEALAIVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRTIVERGLDASPVSQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYQRMRDMG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F P +++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 93/297 (31%), Gaps = 34/297 (11%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L G++ + D D V V+ +PD G Sbjct: 593 LRALGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNVVDVERPDGVIIQFGGQTPL 652 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + A D+ + + P S + I Sbjct: 653 KLARALEAVGVPIWGTAPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALTVARRI 712 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P V++P + ++ D ++ + ++ + + +LI+++++ + D Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDDAALERYMREAVAASPEHPVLIDRFLED---AFEMDVD 769 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGI 243 A D + + S +S V+P + + + QA+G G+ Sbjct: 770 AVCDGHTVVIAGIMEQIELAGVHSGDSACVIPTYMVAEEHVVTMRHYTERLAQALGVVGL 829 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + V+ LE+N + T P +A G + +L V+ A+ R Sbjct: 830 MNIQYAM--KDGVVYVLEVNPRASRT----VPFVAKATGVPWVQLA---VQCAAGAR 877 >gi|283955248|ref|ZP_06372749.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 414] gi|283793285|gb|EFC32053.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 414] Length = 1089 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLRDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + +D I + + + + Sbjct: 209 LGWKEYEMEVIRDRMDNCIIVCSIENIDPMGIHTGDSITIAPALTLTDKEYQIMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 82/260 (31%), Gaps = 11/260 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD G + + +I T + ++ A Sbjct: 619 FEPIDF-EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSVFGTKIIGTSARVIDMAEDRK 677 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K P + + I P +++P + V+ + + L Sbjct: 678 KFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEVELRL 737 Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + ++ + +LI+Q++D E+ + D + + ++ Sbjct: 738 YMQEAVDASDKSPILIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---DSA 794 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 795 CSLPPCNIDEKMQEIITQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT-- 850 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 --VPFVSKATGIPLAKVATR 868 >gi|302879461|ref|YP_003848025.1| carbamoyl-phosphate synthase, large subunit [Gallionella capsiferriformans ES-2] gi|302582250|gb|ADL56261.1| carbamoyl-phosphate synthase, large subunit [Gallionella capsiferriformans ES-2] Length = 1075 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G++V + D D + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPITWQIVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A ++ D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLAHHGVLEKYNVEMIGASREAIDMAEDREKFKQAMTRIGLASARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q ++ P VI+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQQVMGFPTVIRPSFTMGGSGGGIAYNREEFLEICERGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHTGDSITVAPALTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFSINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 88/298 (29%), Gaps = 37/298 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V V+A KP Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPVGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T ++ A ++ + + P + + Sbjct: 637 GGQTPLSLARGLEKNGVPIIGTTPDMIDCAEDRERFKQMLMALELKQPPNRTASTVAEGL 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-----QYVD 173 I P V++P + +I + + + + + + D Sbjct: 697 AGAAAIGYPLVMRPSNVLGGRAMEIIHEQVDLERYMRDAEIMSKTYPERLPILLDRFLND 756 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 IE+ + D + + + +S ++ + P +P+ + E++R Sbjct: 757 AIEVDVDAVSDGVDVIIGGIMEHIEEAG---VHSGDSACSLPPFSLPVAMQNELRRQTVA 813 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G+ F V+ LE+N + T P ++ G ++ Sbjct: 814 MARALNVVGLMNVQFAI--QGETVYVLEVNPRASRT----VPFVSKATGVPLAKIAAR 865 >gi|329910106|ref|ZP_08275232.1| Carbamoyl-phosphate synthase large chain [Oxalobacteraceae bacterium IMCC9480] gi|327546259|gb|EGF31290.1| Carbamoyl-phosphate synthase large chain [Oxalobacteraceae bacterium IMCC9480] Length = 1076 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADVTYIEPITWQVVESIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + A ++ D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLHHNGVLTKYNCELIGASPEAIDMAEDRSKFKEAMTRIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + +LLIE+ Sbjct: 149 AHTLDEAWTVQKTLGFPIVIRPSFTMGGSGGGIAYNSEEFETICKRGLEASPTTELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + +D I + + + + Sbjct: 209 SLLGWKEFEMEVVRDKMDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 92/300 (30%), Gaps = 37/300 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPYGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ P + + Sbjct: 637 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFSQLLKDLGLRQPPNRTARTEADAL 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ +H +L++++ D IE+ Sbjct: 697 LLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + E++R L + Sbjct: 757 DVDCLSDGTRTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQPTIDEIKRQTSLMAKG 813 Query: 238 IGCRGISRSDFLFDPL------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F VF LE+N + T P ++ G ++ Sbjct: 814 LNVVGLMNVQFAIQQQVIDGVSQDVVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 869 >gi|242238045|ref|YP_002986226.1| carbamoyl phosphate synthase large subunit [Dickeya dadantii Ech703] gi|242130102|gb|ACS84404.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii Ech703] Length = 1074 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 Q + + T + A ++ + S P ++ ++ Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLSLKQPANATVSTIDQAVEKAAA 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELSVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|307132640|ref|YP_003884656.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937] gi|306530169|gb|ADN00100.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937] Length = 1074 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 Q + + T + A ++ + P ++ ++ Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA DI ++R + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKDIQDVMRRQVEKLAFELSVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|295425248|ref|ZP_06817951.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus amylolyticus DSM 11664] gi|295065024|gb|EFG55929.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus amylolyticus DSM 11664] Length = 1060 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62 C AL+ G++ I D S L L + NV Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPGGVIVQFGG 636 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120 + A LE I + + + D+ +++ + + + +++ Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKDLHLNQPKGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADRLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AICDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEVKEKITDVTRKLALKLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 IGIMNIQFIV--RDGQVYVIEVNPRASRT----VPFLSKITGIEMAQVASRVI 860 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALSKTGILDELHIELLGTKLDSIEQAEDREKFKELCKSLGEPVPPSLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + K + + + + LIEQ Sbjct: 149 VHHVQEALDFADKIGYPIIVRPAFTMGGTGGGICKNREELARICKNGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDSHDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|91762828|ref|ZP_01264793.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter ubique HTCC1002] gi|91718630|gb|EAS85280.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter ubique HTCC1002] Length = 1074 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+D G+KV I+ + + +L KPD Sbjct: 29 SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + ++A L+ +I + A + + D+ + ++ + G+ + S Sbjct: 89 TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + R + I P +I+P LG + K ++ + + Q+LIE+ Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVKQILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D I + + + + Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 35/293 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------------H 59 AL+D+GF+ I D D S L LK + +N++ Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNIIKKEQQKGNLVGIIAQFG 646 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G L I T + A D+ R + + Sbjct: 647 GQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAIQ 706 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178 I P +++P + ++ + + + ++ + +LI++++ +E+ Sbjct: 707 IAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEENPILIDKFISHAMEVD 766 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + ++ + P I + E++ A+ Sbjct: 767 VDAISDGKQVFVAGIMQHIEEAGIHSG---DSACCLPPVSIKPKLISEIEIQTKKLALAL 823 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G F + +++ +E+N + T P ++ G ++ Sbjct: 824 NVKGFMNIQFAI--KNDEIYVIEVNPRASRT----VPFVSKAKGLPLAKIASR 870 >gi|260101455|ref|ZP_05751692.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus helveticus DSM 20075] gi|260084729|gb|EEW68849.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus helveticus DSM 20075] Length = 858 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 87/289 (30%), Gaps = 30/289 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V +P+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A ++ P + + M + Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L + +L++ Y+DG E + Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ +++ + A+ C+G Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 I F+ V+ +E+N + T P ++ G ++ Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATR 858 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + LIE+ Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|89095225|ref|ZP_01168148.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp. MED92] gi|89080522|gb|EAR59771.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp. MED92] Length = 1069 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + ++V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADSTYIEPINWKTVEKIIAKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLEREGVLEKHGVEMIGANADTIDKAEDRDRFDKAMKNIGLECPRAAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALQVQAQLGFPCIIRPSFTMGGTGGGIAYNKEEFIEICERGLDLSPTTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 101/291 (34%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NF 62 +AL D GF+ + D D S L + + ++H + Sbjct: 582 VHAALAARDDGFETIMVNCNPETVSTDYDTSDRLFFEPITLEDVLEIVHVEKPKGVIVQY 641 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPSILVNRFTM 118 G ++ + L + G A+ + R + + P ++ + Sbjct: 642 GGQTPLKLAVALEQAGVPIIGTSPEAIDRAEDREQFQQMLKRLGLKQPENATVRSLEEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 + P V++P + ++ K++ + + + ++ +L++ +++ +E+ Sbjct: 702 IEADKLGYPLVVRPSYVLGGRAMEIVYKEEELRRYMTTAVQVSNDAPVLLDHFLNAAVEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ P + D+ E++ + Sbjct: 762 DIDAVCDGKDVVIGAIMQHIEQAG---VHSGDSACSFPPYSLAADVQDEMREMVRKMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + + +++ +E+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNTQLAY--QDGEIYVIEVNPRASRT----VPFVSKCIGVSLAKI 863 >gi|329296592|ref|ZP_08253928.1| carbamoyl phosphate synthase large subunit [Plautia stali symbiont] Length = 1074 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + S + S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSICLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALEVAEEVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDCAEDRERFQQAVDRLKLKQPANATVATLEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSTEIQNVMRQQVEKLAFELNVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|294669529|ref|ZP_06734596.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308442|gb|EFE49685.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 1071 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPRSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|218708498|ref|YP_002416119.1| carbamoyl phosphate synthase large subunit [Vibrio splendidus LGP32] gi|218321517|emb|CAV17469.1| Carbamoyl-phosphate synthase large chain [Vibrio splendidus LGP32] Length = 1076 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 + G D +LE + + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I ++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----VPFVSKATG 857 >gi|187735121|ref|YP_001877233.1| carbamoyl-phosphate synthase, large subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425173|gb|ACD04452.1| carbamoyl-phosphate synthase, large subunit [Akkermansia muciniphila ATCC BAA-835] Length = 1064 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 95/305 (31%), Gaps = 38/305 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+ V ++ + + V+ +PD Sbjct: 29 SGTQACKALRAEGYDVVLVNSNPATIMTDPGMADHTYIEPLTVDRITAVIEKERPDALLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + IL+ + + A A D++ K+ + GVPV S Sbjct: 89 NLGGQTALNLASKLHEEGILKQYGVEVIGVDLEAIARGEDRIIFKETMDRIGVPVAKSEP 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + + +Q+L+E+ Sbjct: 149 VYSVEEAEKVASELGYPVVLRPAYTMGGTGGGIVYNVEELRQVVPRGLAASLINQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G E + + +P ++ ++ Sbjct: 209 CVLGWEELELEVVRDAKGQKITVCFIENVDPMGVHTGDSFCVAPMLTVPQ----EVQDKL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q ++ AIG G + F + ++ +EIN + T S + G+ Sbjct: 265 QDYSYRILDAIGVTGGTNVQFAHNREDNRIIVIEINPR---TSRSS-ALASKATGFPIAS 320 Query: 288 LLLWM 292 + + Sbjct: 321 VSTKL 325 Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 86/263 (32%), Gaps = 17/263 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 F+ + V + KP+ G + L+ + + Sbjct: 607 NKLYFEPVTV---EDVLAIYEKEKPEGVIVQFGGQ--TPLNIAQALKDAGVKIMGTQPEG 661 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVI 144 L+ D+ ++ + + + S + I P +++P G+ VI Sbjct: 662 IRLAEDREYFRERMIALNIRQPESGTARSLEEAVELGRRIGYPVMVRPSFVLGGRGMEVI 721 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 ++++ +++ + +LI++++D IE + D + + + Sbjct: 722 YDEENLKRYGVEAIQVSPEYPMLIDRFLDNAIEAEVDALADGTDTFVATVMEHIELAGIH 781 Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 ++ + P I + ++ A Q +GI F + +V+ +E N Sbjct: 782 SG---DSACAIPPVTIAPKHIRTIEEHAAKIAQDFQVKGILNVQFAIC--NDEVYIIEAN 836 Query: 264 VQPGMTPVSIFPEMAAYAGYSFR 286 + T P ++ G S Sbjct: 837 PRASRT----VPIVSKVTGISLA 855 >gi|156935438|ref|YP_001439354.1| carbamoyl phosphate synthase large subunit [Cronobacter sakazakii ATCC BAA-894] gi|156533692|gb|ABU78518.1| hypothetical protein ESA_03297 [Cronobacter sakazakii ATCC BAA-894] Length = 1074 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.6 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|88799655|ref|ZP_01115230.1| carbamoyl-phosphate synthase large subunit [Reinekea sp. MED297] gi|88777549|gb|EAR08749.1| carbamoyl-phosphate synthase large subunit [Reinekea sp. MED297] Length = 1070 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D + V ++A KPD+ Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPIVWQEVEKIIAKEKPDVLLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ + + + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLEKHGVLKKYGVEMIGANADTIDKAEDRDRFDKAMKAIGLETPKSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + ++LLI++ Sbjct: 149 AHNMDEAWAIAEELGFPSIIRPSFTMGGSGGGIAYNKDEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPSQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 88/263 (33%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP G + I T + Sbjct: 613 DRLYFEPV---TAEDVLEIIELEKPKGVIVHYGGQTPLKLARELEAAGAPIIGTSPDAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + + I P V++P + ++ + Sbjct: 670 RAEDRERFQVMVDKLGLLQPENGTARSHDEAVKIAARIGYPLVVRPSYVLGGRAMEIVYR 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + ++ ++ +L+++++D IE+ + D V + + Sbjct: 730 EEELNRYMNEAVQVSNEAPVLLDRFLDDAIEVDIDCVSDGEQVVIGAIMQHIEQAG---V 786 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P +P + ++++ + G+ + K++ +E+N + Sbjct: 787 HSGDSACSLPPYSLPDEAQQQIRDQVKAMALELNVVGLMNVQMAW--QDGKLYIIEVNPR 844 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G S ++ Sbjct: 845 ASRT----VPFVSKAIGQSLAKI 863 >gi|226941819|ref|YP_002796893.1| CarB [Laribacter hongkongensis HLHK9] gi|226716746|gb|ACO75884.1| CarB [Laribacter hongkongensis HLHK9] Length = 1068 Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G+KV + D + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPITWQMVAKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K ++ + + S Sbjct: 89 TMGGQTALNCALDLARHGVLDQFGVELIGASVEAIDKAEDRDKFKLAMQKIGLECSRSKV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALTIQAEVGFPTIIRPSFTMGGSGGGIAYNREEFLAICERGFEASPTHELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SMLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVQPDTGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 96/294 (32%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL ++GF+ + D D V V A KP Sbjct: 577 VHAALAMRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCAVEKPWGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T ++ +A ++ + P + + + Sbjct: 637 GGQTPLKLARALEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPQEAL 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ ++ +L++++ D IE+ Sbjct: 697 QLAEEIGYPLVVRPSYVLGGRAMEIVHERADLERYMREAVKVSNDSPVLLDRFLNDAIEV 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + I E++R +A Sbjct: 757 DVDAISDGTDVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPAIQDEIRRQTVAMARA 813 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F ++ LE+N + T P ++ G S ++ Sbjct: 814 LNVVGLMNVQFAV--QGDTIYVLEVNPRASRT----VPFVSKVTGQSLAKIAAR 861 >gi|310765119|gb|ADP10069.1| carbamoyl phosphate synthase large subunit [Erwinia sp. Ejp617] Length = 1084 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ + Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAM 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I +++ +G RG Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867 >gi|68535998|ref|YP_250703.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] gi|68263597|emb|CAI37085.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium jeikeium K411] Length = 193 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45 +AVL GG SSE VS S A L+ ++V + + V Sbjct: 26 VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWV 70 >gi|332534012|ref|ZP_08409863.1| carbamoyl-phosphate synthase large chain [Pseudoalteromonas haloplanktis ANT/505] gi|332036561|gb|EGI73028.1| carbamoyl-phosphate synthase large chain [Pseudoalteromonas haloplanktis ANT/505] Length = 1072 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + + A + ++ R + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDVAMKNIGLECPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D+ I P +I+P G V + + + ++LLI++ Sbjct: 149 AHSMEEAKDTMSRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGINPEDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + + P ++ + Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLNLLQPENATVTSTEEALLKSVE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVSASNEAPVLLDRFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + ++ +++ +G G Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLSQEVQDVMRKQVTDMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F KV+ +E+N + T P ++ G + ++ Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866 >gi|325266826|ref|ZP_08133497.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans ATCC 33394] gi|324981567|gb|EGC17208.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans ATCC 33394] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|241760250|ref|ZP_04758346.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens SK114] gi|241319361|gb|EER55826.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens SK114] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240127438|ref|ZP_04740099.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae SK-93-1035] gi|268685811|ref|ZP_06152673.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae SK-93-1035] gi|268626095|gb|EEZ58495.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae SK-93-1035] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + +I + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240122735|ref|ZP_04735691.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae PID332] gi|268681334|ref|ZP_06148196.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID332] gi|268621618|gb|EEZ54018.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID332] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240117100|ref|ZP_04731162.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae PID1] gi|240124927|ref|ZP_04737813.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae SK-92-679] gi|268602785|ref|ZP_06136952.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID1] gi|268683505|ref|ZP_06150367.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae SK-92-679] gi|268586916|gb|EEZ51592.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID1] gi|268623789|gb|EEZ56189.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae SK-92-679] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240114896|ref|ZP_04728958.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae PID18] gi|260441288|ref|ZP_05795104.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae DGI2] gi|268600552|ref|ZP_06134719.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID18] gi|291044644|ref|ZP_06570353.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae DGI2] gi|268584683|gb|EEZ49359.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae PID18] gi|291011538|gb|EFE03534.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae DGI2] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240079943|ref|ZP_04724486.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA19] gi|268596082|ref|ZP_06130249.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA19] gi|268549870|gb|EEZ44889.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA19] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240013361|ref|ZP_04720274.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae DGI18] gi|240120434|ref|ZP_04733396.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae PID24-1] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|239998178|ref|ZP_04718102.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae 35/02] gi|240015805|ref|ZP_04722345.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA6140] gi|268594030|ref|ZP_06128197.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae 35/02] gi|268547419|gb|EEZ42837.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae 35/02] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|240112150|ref|ZP_04726640.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae MS11] gi|254492955|ref|ZP_05106126.1| carbamoyl-phosphate synthase subunit large chain [Neisseria gonorrhoeae 1291] gi|268598207|ref|ZP_06132374.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae MS11] gi|226511995|gb|EEH61340.1| carbamoyl-phosphate synthase subunit large chain [Neisseria gonorrhoeae 1291] gi|268582338|gb|EEZ47014.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae MS11] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 35/288 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL ++GF+ + D D V ++ P ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFDPLTLEDVLEIVRTENPWGV--IVHYGGQ 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 640 TPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKA 699 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCG 180 I P V++P + ++ +++ + ++ + +L++ + + IE+ Sbjct: 700 EEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + + + P + +I E++R A+G Sbjct: 760 CVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGV 816 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F VF LE+N + T P ++ G ++ Sbjct: 817 VGLMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|261378475|ref|ZP_05983048.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC 14685] gi|269145269|gb|EEZ71687.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC 14685] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|261365571|ref|ZP_05978454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC 25996] gi|288565894|gb|EFC87454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC 25996] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|225024768|ref|ZP_03713960.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC 23834] gi|224942475|gb|EEG23684.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC 23834] Length = 1069 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|59800515|ref|YP_207227.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA 1090] gi|293397753|ref|ZP_06641959.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae F62] gi|59717410|gb|AAW88815.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae FA 1090] gi|291611699|gb|EFF40768.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae F62] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + +I + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|27364027|ref|NP_759555.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus CMCP6] gi|37678809|ref|NP_933418.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus YJ016] gi|320157410|ref|YP_004189789.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus MO6-24/O] gi|31340016|sp|Q8DEM2|CARB_VIBVU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|71152356|sp|Q7MNU0|CARB_VIBVY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|27360144|gb|AAO09082.1| Carbamoyl-phosphate synthase large chain [Vibrio vulnificus CMCP6] gi|37197550|dbj|BAC93389.1| carbamoylphosphate synthase large subunit [Vibrio vulnificus YJ016] gi|319932722|gb|ADV87586.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus MO6-24/O] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AIEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|271502091|ref|YP_003335117.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii Ech586] gi|270345646|gb|ACZ78411.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii Ech586] Length = 1074 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 Q + + T + A ++ + P ++ ++ Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVN 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELAVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|77166030|ref|YP_344555.1| carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Nitrosococcus oceani ATCC 19707] gi|254436388|ref|ZP_05049894.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani AFC27] gi|76884344|gb|ABA59025.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus oceani ATCC 19707] gi|207088078|gb|EDZ65351.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani AFC27] Length = 1073 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G++V ++ + ++V ++ +PD Sbjct: 29 SGAQACKSLKEEGYRVILVNSNPATIMTDPELADATYIEPITWKTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + ILE ++ + A + D+ +Q + G+ + S + Sbjct: 89 TMGGQTALNCALDLAREGILERYDVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P VI+P G + + + + +LLI++ Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICTIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVDPENGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/289 (10%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V +++ +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIISLEQPQGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I T + A ++ + P + + Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQWLIEKLGLKQPPNRTARTQEEAIRLAAE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ + + ++ S ++ +L+++++ + E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + ++ + + + G Sbjct: 767 CDGEQVMVGGIMEHIEQAG---VHSGDSACALPPFSLSAAVQNRLREQVYNMARELKVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F + +++ LE+N + T P ++ G ++ Sbjct: 824 LMNTQFAI--QANEIYILEVNPRASRT----VPFVSKTIGIPLAKVAAR 866 >gi|119469582|ref|ZP_01612486.1| carbamoyl-phosphate synthase large subunit [Alteromonadales bacterium TW-7] gi|119447117|gb|EAW28387.1| carbamoyl-phosphate synthase large subunit [Alteromonadales bacterium TW-7] Length = 1072 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + + A + ++ R + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDTAMKNIGLECPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D+ I P +I+P G V + + + ++LLI++ Sbjct: 149 AHSMEEAKDTMSRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYETEVVRDKKDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V ++ KP G Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ + Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLDLLQPENATVTSTEEAILKSAE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L++ ++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVQASNEAPVLLDHFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + ++ +++ +G G Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLSQEVQDVMRKQVTDMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F KV+ +E+N + T P ++ G + ++ Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866 >gi|315038738|ref|YP_004032306.1| carbamoyl phosphate synthase large subunit [Lactobacillus amylovorus GRL 1112] gi|325957174|ref|YP_004292586.1| carbamoyl phosphate synthase large subunit [Lactobacillus acidophilus 30SC] gi|312276871|gb|ADQ59511.1| carbamoyl phosphate synthase large subunit [Lactobacillus amylovorus GRL 1112] gi|325333739|gb|ADZ07647.1| carbamoyl phosphate synthase large subunit [Lactobacillus acidophilus 30SC] Length = 1062 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62 C AL+ G++ I D S L L + NV Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVGAIVQFGG 636 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120 + A LE + + + + D+ +++ + + + + +++ Sbjct: 637 QTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPNGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTEEVKEKITDVTRKLALTLHC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNREELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPTSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|251788195|ref|YP_003002916.1| carbamoyl phosphate synthase large subunit [Dickeya zeae Ech1591] gi|247536816|gb|ACT05437.1| carbamoyl-phosphate synthase, large subunit [Dickeya zeae Ech1591] Length = 1074 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSNRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 Q + + T + A ++ + P ++ ++ Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I E++R + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDEMRRQVEKLAFELSVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|237807800|ref|YP_002892240.1| carbamoyl-phosphate synthase, large subunit [Tolumonas auensis DSM 9187] gi|237500061|gb|ACQ92654.1| carbamoyl-phosphate synthase, large subunit [Tolumonas auensis DSM 9187] Length = 1075 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPEMADATYIEPITWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A + D+ R + S G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRRRFDLAMRSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D Q + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMDEAWDVQKTVGFPCIIRPSFTMGGSGGGIAYNPEEFVEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPDDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 96/322 (29%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A AL + G++ + D D Sbjct: 561 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + I T + A Sbjct: 614 RLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLSRALEAAGVPIIGTSPDAIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ ++ I P V++P + ++ + + Sbjct: 674 RERFQQAVERLGLKQPQNTTVTAMEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVSDEIDL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 ++ S ++ +L++ ++D IEL + D + V + + Sbjct: 734 RRYFNEAVSVSNESPVLLDHFLDNAIELDVDAICDGEVVVIGGVMEHIEQCGIHSG---D 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + + P + D+ E++ + G+ F ++ +E+N + T Sbjct: 791 SGCSLPPYSLKADVLAEIREQVRKLAMELKVVGLMNVQFAV--KDDVIYLIEVNPRAART 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 849 ----VPFVSKATGAPLAKIAAR 866 >gi|260596463|ref|YP_003209034.1| carbamoyl phosphate synthase large subunit [Cronobacter turicensis z3032] gi|260215640|emb|CBA27925.1| Carbamoyl-phosphate synthase large chain [Cronobacter turicensis z3032] Length = 1074 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.6 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|254507846|ref|ZP_05119976.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus 16] gi|219549219|gb|EED26214.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus 16] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTLEQAVEKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F + KV+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KNNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|168061790|ref|XP_001782869.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665647|gb|EDQ52324.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1084 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + V VL +PD Sbjct: 16 SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 75 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ K+ ++ G+ PS + Sbjct: 76 TMGGQTALNLACALAKSGVLDKYNVELIGAKLDAIEKAEDRELFKKAMAKIGINSPPSGI 135 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + P +I+P G + + S + Q+L+E Sbjct: 136 AHTMDQCFEIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLSASINSQVLVE 195 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + S + + + + + Sbjct: 196 KSLLGWKEYELEVMRDLADNVVIICSIENIDSMGVHTGDSITVAPAQTLTDKEYQRLRDQ 255 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 256 SVAIIREIGVECGGSNVQFAVNPKNGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 311 Query: 290 LWM 292 + Sbjct: 312 AKL 314 >gi|15677690|ref|NP_274851.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis MC58] gi|22095532|sp|Q9JXW8|CARB_NEIMB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|7227111|gb|AAF42189.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis MC58] gi|316985462|gb|EFV64409.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis H44/76] gi|325139516|gb|EGC62056.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis CU385] gi|325200914|gb|ADY96369.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis H44/76] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|332160251|ref|YP_004296828.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607179|emb|CBY28677.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica subsp. palearctica Y11] gi|325664481|gb|ADZ41125.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867 >gi|304388391|ref|ZP_07370501.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis ATCC 13091] gi|304337623|gb|EFM03782.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis ATCC 13091] Length = 1071 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAMNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDCKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|238752267|ref|ZP_04613747.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC 43380] gi|238709535|gb|EEQ01773.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC 43380] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ +D Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|238764646|ref|ZP_04625591.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii ATCC 33638] gi|238697138|gb|EEP89910.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii ATCC 33638] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|123440986|ref|YP_001004975.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087947|emb|CAL10735.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|238786676|ref|ZP_04630477.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii ATCC 33641] gi|238725044|gb|EEQ16683.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii ATCC 33641] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPTGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKASG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|51594975|ref|YP_069166.1| carbamoyl phosphate synthase large subunit [Yersinia pseudotuberculosis IP 32953] gi|145600406|ref|YP_001164482.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Pestoides F] gi|153947267|ref|YP_001402408.1| carbamoyl phosphate synthase large subunit [Yersinia pseudotuberculosis IP 31758] gi|170025797|ref|YP_001722302.1| carbamoyl phosphate synthase large subunit [Yersinia pseudotuberculosis YPIII] gi|186893977|ref|YP_001871089.1| carbamoyl phosphate synthase large subunit [Yersinia pseudotuberculosis PB1/+] gi|51588257|emb|CAH19864.1| carbamoyl-phosphate synthase, large subunit [Yersinia pseudotuberculosis IP 32953] gi|145212102|gb|ABP41509.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Pestoides F] gi|152958762|gb|ABS46223.1| carbamoyl-phosphate synthase, large subunit [Yersinia pseudotuberculosis IP 31758] gi|169752331|gb|ACA69849.1| carbamoyl-phosphate synthase, large subunit [Yersinia pseudotuberculosis YPIII] gi|186697003|gb|ACC87632.1| carbamoyl-phosphate synthase, large subunit [Yersinia pseudotuberculosis PB1/+] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|22127566|ref|NP_670989.1| carbamoyl phosphate synthase large subunit [Yersinia pestis KIM 10] gi|45443429|ref|NP_994968.1| carbamoyl phosphate synthase large subunit [Yersinia pestis biovar Microtus str. 91001] gi|108810065|ref|YP_653981.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Antiqua] gi|108810520|ref|YP_646287.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Nepal516] gi|150260481|ref|ZP_01917209.1| carbamoyl-phosphate synthase large chain [Yersinia pestis CA88-4125] gi|162418950|ref|YP_001605358.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Angola] gi|165927321|ref|ZP_02223153.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937764|ref|ZP_02226325.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008680|ref|ZP_02229578.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211869|ref|ZP_02237904.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401670|ref|ZP_02307164.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421983|ref|ZP_02313736.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426016|ref|ZP_02317769.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927680|ref|YP_002345555.1| carbamoyl phosphate synthase large subunit [Yersinia pestis CO92] gi|229836935|ref|ZP_04457100.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Pestoides A] gi|229840369|ref|ZP_04460528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842449|ref|ZP_04462604.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229900708|ref|ZP_04515832.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Nepal516] gi|270487923|ref|ZP_06204997.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM D27] gi|294502578|ref|YP_003566640.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Z176003] gi|22095514|sp|Q8ZIL4|CARB_YERPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|21960671|gb|AAM87240.1|AE013972_7 carbamoyl-phosphate synthase large subunit [Yersinia pestis KIM 10] gi|45438298|gb|AAS63845.1| carbamoyl-phosphate synthase large chain [Yersinia pestis biovar Microtus str. 91001] gi|108774168|gb|ABG16687.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Nepal516] gi|108781978|gb|ABG16036.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Antiqua] gi|115346291|emb|CAL19162.1| carbamoyl-phosphate synthase large chain [Yersinia pestis CO92] gi|149289889|gb|EDM39966.1| carbamoyl-phosphate synthase large chain [Yersinia pestis CA88-4125] gi|162351765|gb|ABX85713.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis Angola] gi|165914176|gb|EDR32792.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920783|gb|EDR38031.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992019|gb|EDR44320.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206615|gb|EDR51095.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960120|gb|EDR56141.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049052|gb|EDR60460.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054939|gb|EDR64739.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682047|gb|EEO78139.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Nepal516] gi|229690759|gb|EEO82813.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229696735|gb|EEO86782.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705878|gb|EEO91887.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Pestoides A] gi|262360608|gb|ACY57329.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis D106004] gi|262364554|gb|ACY61111.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis D182038] gi|270336427|gb|EFA47204.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM D27] gi|294353037|gb|ADE63378.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis Z176003] gi|320016956|gb|ADW00528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1077 Score = 69.5 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNLATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|315126859|ref|YP_004068862.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas sp. SM9913] gi|315015373|gb|ADT68711.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas sp. SM9913] Length = 1072 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + + A + ++ R + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDVAMRNIGLECPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D+ I P +I+P G V + + + +LLI++ Sbjct: 149 AHSMDEARDTMTRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVNPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ + Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLDLLQPENATVTSTEEAILKSVE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYMTEAVSASNEAPVLLDRFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + ++ +++ +G G Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLTQEVQDVMRKQVTDMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F KV+ +E+N + T P ++ G + ++ Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866 >gi|308185623|ref|YP_003929754.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1] gi|308056133|gb|ADO08305.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1] Length = 1075 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +LE + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P ++ +E+N P ++ S FP A Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLKLKQPANATVATLEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLNQEIQNVMRQQVEKLAFELNVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|304396527|ref|ZP_07378408.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB] gi|304356036|gb|EFM20402.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB] Length = 1075 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +LE + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P ++ +E+N P ++ S FP A Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQNVMRQQVEKLAFELNVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|27904637|ref|NP_777763.1| carbamoyl phosphate synthetase large chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427630|sp|P59448|CARB_BUCBP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|27904034|gb|AAO26868.1| carbamoyl phosphate synthetase large chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 1076 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 37/314 (11%), Positives = 91/314 (28%), Gaps = 40/314 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G+K+ + D D + + ++ PD Sbjct: 29 SGAQACKALKELGYKIILVNSNPATIMTDPDMADSTYIEPIHWSIIKKIIQQEHPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G +++ + R S + + + Sbjct: 89 TMGGQTALNCVLDLDNHGILKKHKIEIIGATINSIKKAENRKLFEKSMNKIGLKTAKCEI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ H I P +++P G + + + + +LLI++ Sbjct: 149 VHNINMAHNVIDKIGFPAIVRPSFTMGGSGGGIAHNYEEFKNICTEGLKLSPSKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNNNCIIVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQNMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G + F +P + + +E+N P ++ S ++AA Sbjct: 269 ISILKEIGVETGGANVQFAINPDNGDMIVIEMN--PRVSRSSALASKATGFPIAKIAAQL 326 Query: 280 YAGYSFRELLLWMV 293 G + EL ++ Sbjct: 327 AVGLTLDELKNDII 340 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 102/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ I D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFETIMINCNPETVSTDYDISN 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 ++ ++ KP G + + I T + + + Sbjct: 615 RLYFEPIILETILEIVRIEKPYGVIIQYGGQTPLKLAKELEQANVPIIGTSPDSIDKSEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + + P ++ + + I P +I+P + ++ ++++ Sbjct: 675 RKRFQKIVSMLNLKQPKNATVTNLQEAIIQAKSIKYPIMIRPSYVLGGQSMEIVYDEKNL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 +L++ Y++ V DA D T + + + + S + Sbjct: 735 TNFFNNVCINFKKFPILLDHYLEN---AIEVDVDAICDGTHVFIGGIMEHIEQAGIHSGD 791 Query: 211 STHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S LPA I E++ ++ +G+ F + ++ +E+N + T Sbjct: 792 SACSLPAYTLNKNIQNEIRSQVKKLALSLSVKGLMNVQFAI--QNENIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G + ++ Sbjct: 850 ----IPFVSKATGVALAKIAAR 867 >gi|295696784|ref|YP_003590022.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM 2912] gi|295412386|gb|ADG06878.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM 2912] Length = 1080 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 32/286 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL GF+ I D D V V+ D + G Sbjct: 600 ALRRLGFETVIINNNPETVSTDFDTADRLYFEPLTAEDVLNVIEREGIDQVYVQFGGQTA 659 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + + T L +A ++ R + Sbjct: 660 INLAAELAEYGVSVCGTPVEALDAAEDRERFRQLLDQLEIPQTRGGTAFDVPGARAIAEA 719 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + V Q + + +++ +L++ Y+ G E+ + Sbjct: 720 VGYPVVVRPSYVIGGRAMEVCWNVQELEAYMSRAARVTPDHPVLVDHYLPGKEVEVDAIS 779 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P + D ++ R+ +A+G G Sbjct: 780 DGRDVLI----PGIFEHIERAGVHSGDSMAVYPDQTLTQDERAQMIRVTEQIARALGIVG 835 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ V+ LE+N + T P ++ G EL Sbjct: 836 LMNIQFVIL--DGTVYVLEVNPRASRT----VPILSKVTGVPMVEL 875 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G AL + G++V + D+D S+ ++A +PD Sbjct: 48 GTQACKALREEGYRVILVNSNPATIMTDLDMADVVYLEPLTPESLEAIIAKERPDGLLPT 107 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + V + +L+ + + + + + D+ K+ + VP + Sbjct: 108 LGGQTGLNLAVALAERGVLDRYGVRLLGTPLASIQKAEDRELFKETMERIGEPVPESAIV 167 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M I P +++P G + + + L++ + Q+L+E+ Sbjct: 168 HNMEEGMAFIEQIGLPVILRPAYTLGGTGGGIAETLEEFKAILMRGLRQSPIGQVLVERS 227 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G T I V + ++ + + Y+ ++ A Sbjct: 228 IRGW-KEIEYEVMRDGAGTCITVCNMENLDPVGVHTGDSIVVAPSQTLTDREYQMLRSAA 286 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 287 LRIIDALEIEGGCNVQFALDPHSERYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 342 Query: 292 M 292 + Sbjct: 343 I 343 >gi|291557307|emb|CBL34424.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum V10Sc8a] Length = 1092 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 90/299 (30%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + D D + ++ +PD Sbjct: 49 SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 108 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K + G+ + S Sbjct: 109 NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 168 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 169 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 228 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E D + + +P + ++ Sbjct: 229 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQDM- 287 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ ++I G F +P + ++ +EIN + T S + G+ Sbjct: 288 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 339 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 98/299 (32%), Gaps = 33/299 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL+ GF+ + D D S L L + + +H G++ Sbjct: 601 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 659 Query: 72 -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122 L+ + + L+ D+ + ++ +P+ S + ++ + Sbjct: 660 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLKIPMPESGMAVNVDEALEIAN 719 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ D+ + + + + +LI++++ Sbjct: 720 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 776 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241 DA D VP + S +S +LP+ + ++ + Sbjct: 777 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVC 836 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+ + V+ LE N + T P ++ + +L ++ + + Sbjct: 837 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQIITSSLTGK 889 >gi|206579070|ref|YP_002240498.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae 342] gi|288937198|ref|YP_003441257.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola At-22] gi|290512619|ref|ZP_06551985.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55] gi|206568128|gb|ACI09904.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae 342] gi|288891907|gb|ADC60225.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola At-22] gi|289774960|gb|EFD82962.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55] Length = 1074 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVERAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + + +I ++ + RG Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|323466240|gb|ADX69927.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus helveticus H10] Length = 1062 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ G++ I+ + V V KP+ G Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A + P + + + + Sbjct: 639 SINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLKLNQPQGLTATTHEGVIAAAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + L +L++ Y+DG E + Sbjct: 699 KLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ ++ + + C G Sbjct: 759 CDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKDKITEVTRKLALELNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + LIE+ Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHNNNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|209694178|ref|YP_002262106.1| carbamoyl phosphate synthase large subunit [Aliivibrio salmonicida LFI1238] gi|208008129|emb|CAQ78271.1| carbamoyl-phosphate synthase large chain [Aliivibrio salmonicida LFI1238] Length = 1076 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRGGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCTIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTAMEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AIEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIAGIMEHIEQAGVHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----IPFVSKATG 857 >gi|187735236|ref|YP_001877348.1| hypothetical protein Amuc_0730 [Akkermansia muciniphila ATCC BAA-835] gi|187425288|gb|ACD04567.1| conserved hypothetical protein [Akkermansia muciniphila ATCC BAA-835] Length = 341 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 9/279 (3%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN--FGEDGLVQAILELLEIP 78 A++D G+ V + + A D F++++ + + + E +++P Sbjct: 48 NIYKAIQDIGYDVVS--SSKPYSVQFAKGNVDYVFSLMNRFAMSRPEIFISSYCEFIQVP 105 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGS 137 Y + A++ DK +K V S + V I ++ P PY +K G+ Sbjct: 106 YLGAPPNIRAIAEDKFLTKMVFRSLELNVPEGIGLSGEKGIPAQAPFPGPYFVKKRF-GA 164 Query: 138 SLGIIVIKKDQSIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 + G I S + G ++L+EQY +GI++T V+G + + P Sbjct: 165 ASGGIREDSICSSWKAVGSCARRLMEEGHEVLVEQYCEGIDVTVPVLGGENPVILGYVQP 224 Query: 196 KSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 KSD + H D+ +++ A+G R D+ D + Sbjct: 225 KSDKPGSIITEDLKLHDHLGYQLVSVQDMEQDIASDVRKIWSALGPMDYFRIDYRIDFET 284 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + LE+N+ + AA GYS +LL +++ Sbjct: 285 GERRILEMNICCHLGKSGSICLAAAEHGYSQADLLKYII 323 >gi|149196836|ref|ZP_01873889.1| carbamoyl-phosphate synthase large subunit [Lentisphaera araneosa HTCC2155] gi|149139946|gb|EDM28346.1| carbamoyl-phosphate synthase large subunit [Lentisphaera araneosa HTCC2155] Length = 1079 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 33/304 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG AL + G++V + D + ++ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPEFSDRTYIEPLTTEFLEKIIERERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + LE + + + ++ R + ++ G+ + Sbjct: 89 TLGGQTALNAAIALHDEGILEKYNVMMLGATPDVIDKAENRDRFRVLMEGIGLDMPRCAT 148 Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + P +I+P G + D+ + +++LI Sbjct: 149 ATDMEGCYKVREWLGGEYPLIIRPSFTMGGSGGGIAYNDEEFDRICKTGMDMSPTNEVLI 208 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 ++ + G + + D I +F + + + + Sbjct: 209 DESILGWKEYELEVVRDKNDNAIIVCSIENFDPVGVHTGDSITVAPIQTLTDREYQIMRD 268 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + + G S + P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 KSIAVLREVGVETGGSNVQWAVCPKTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKI 324 Query: 289 LLWM 292 + Sbjct: 325 AAKL 328 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 90/290 (31%), Gaps = 34/290 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AGF+ + D D V + + D A G Sbjct: 594 ALREAGFETIMVNSNPETVSTDYDTSDKLYFEPLTLEDVLAIYESEECDGAIVQFGGQTP 653 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A D + P + + Sbjct: 654 LNLAADLKANGVNVIGTSPESIEQAEDRDFFQKLVTELDIKQPANGIAVNVEQAVAIADR 713 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + +L+++++D V Sbjct: 714 IEYPVLVRPSFVLGGRAMAIVYDEPELRKYMETAVDVSDDKPILVDKFLDD---AVEVDV 770 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D D + + S +S +P+ D + +++ + +A+ RG Sbjct: 771 DCISDGETSVIGAIMEHVEPAGVHSGDSATCIPSMTLTDSVKDVIRQHTYNLAKALKVRG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + + S +V+ +E+N + T P ++ G + L+ Sbjct: 831 LMNIQYAV--QSGEVYIIEVNPRASRT----VPYVSKAIGVPMAKYASLV 874 >gi|324112566|gb|EGC06543.1| carbamoyl-phosphate synthase [Escherichia fergusonii B253] gi|325495963|gb|EGC93822.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii ECD227] Length = 1074 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|323964869|gb|EGB60336.1| carbamoyl-phosphate synthase [Escherichia coli M863] gi|323975800|gb|EGB70896.1| carbamoyl-phosphate synthase [Escherichia coli TW10509] gi|327255008|gb|EGE66611.1| carbamoyl-phosphate synthase large chain [Escherichia coli STEC_7v] Length = 1072 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|218547480|ref|YP_002381271.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii ATCC 35469] gi|218355021|emb|CAQ87627.1| carbamoyl-phosphate synthase large subunit [Escherichia fergusonii ATCC 35469] Length = 1073 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|170680299|ref|YP_001742150.1| carbamoyl phosphate synthase large subunit [Escherichia coli SMS-3-5] gi|170518017|gb|ACB16195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli SMS-3-5] Length = 1073 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|150014921|ref|YP_001307175.1| carbamoyl phosphate synthase large subunit [Clostridium beijerinckii NCIMB 8052] gi|189081827|sp|A6LPD9|CARB_CLOB8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|149901386|gb|ABR32219.1| carbamoyl-phosphate synthase, large subunit [Clostridium beijerinckii NCIMB 8052] Length = 1069 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 36/299 (12%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KPD G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIEKEKPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 + L+ I + ++ D+ + +++ G+ I + Sbjct: 640 Q--TAIKLANFLKEQNIVTLGTTADQIDMAEDREKFDELLERLGISRPKGKGIWSLEEGL 697 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +++P G+ + ++ + L + + + + +LI++Y+ G E+ Sbjct: 698 EEAKRLKFPVLVRPSYVIGGQGMEITHDEEELTYYLENAFAKDSKNPILIDKYLMGREIE 757 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 + D + P + S +S + P I I +V A Sbjct: 758 VDAISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNISDKIKADVLEYTKKLALA 813 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 IG +G+ F+ +++ +E+N + T P ++ +G +L ++ A Sbjct: 814 IGIKGMINIQFI--EFEGELYVIEVNPRASRT----VPYISKVSGVPIVDLATQVMLGA 866 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V ++ + V V+A +PD Sbjct: 29 SGTQACEALKSEGIEVVLVNSNPATIMTDKEVADKVYLEPLTLEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G G + V+ LE + + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELHDSGILEKYNVKVIGTSIASIKEGEDRELFRDMMNRIGEPVIKSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 VTDLTAGLEFANKIGYPVIVRPAYTLGGSGGGIADDEEQLRTILESGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G I V + ++ + + Y+ ++ Sbjct: 209 SVKGW-KEVEYEVMRDSYGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY +L Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|323491018|ref|ZP_08096210.1| carbamoyl phosphate synthase large subunit [Vibrio brasiliensis LMG 20546] gi|323314682|gb|EGA67754.1| carbamoyl phosphate synthase large subunit [Vibrio brasiliensis LMG 20546] Length = 1076 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIEQAVEKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|317493341|ref|ZP_07951763.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918734|gb|EFV40071.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1074 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + V P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVVRLGLKQPANATVSTIEQAIEKGAA 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ A +G RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQAEKLAMELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|219871954|ref|YP_002476329.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis SH0165] gi|219692158|gb|ACL33381.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis SH0165] Length = 1066 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + R+V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R KQ + G+ S + Sbjct: 89 TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +Q + P +I+P G + + + +LLIEQ Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL +AG++ + D D S L L + ++H Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEVVRVEKPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123 + L + + + + D+ R ++++ + + + + + Sbjct: 642 LKLANALHENGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVAVANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ D+ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + + +I E++R A+G +G Sbjct: 762 CDGENMVIGGIMQHVEQAGIHSG---DSACSLPAYSLSGEILDEIRRQTKEMAFALGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QNDVVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861 >gi|167855248|ref|ZP_02478017.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis 29755] gi|167853612|gb|EDS24857.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis 29755] Length = 1066 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + R+V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R KQ + G+ S + Sbjct: 89 TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +Q + P +I+P G + + + +LLIEQ Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL +AG++ + D D S L L + ++H Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEVVRVEKPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123 + L + + + + D+ R ++++ + + + + + Sbjct: 642 LKLANALYENGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVALANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P V++P + ++ D+ + + ++ S ++ +L++ + + IE+ + Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + + +I E++R A+G +G Sbjct: 762 CDGENMVIGGIMQHVEQAGIHSG---DSACSLPAYSLSGEILDEIRRQTKEMAFALGVKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QNDVVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861 >gi|327183879|gb|AEA32326.1| carbamoyl phosphate synthase large subunit [Lactobacillus amylovorus GRL 1118] Length = 1062 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62 C AL+ G++ I D S L L + NV Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVGAIVQFGG 636 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120 + A LE + + + + D+ +++ + + + + +++ Sbjct: 637 QTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPKGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTEEVKEKITDVTRKLALTLHC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ +V+ +E+N + T P ++ G ++ ++ Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPTSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|282853025|ref|ZP_06262362.1| conserved domain protein [Propionibacterium acnes J139] gi|282582478|gb|EFB87858.1| conserved domain protein [Propionibacterium acnes J139] Length = 96 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 PA I + +A + + + GISR D + D S + +LE PGMT S+ P Sbjct: 12 PADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVP 70 Query: 276 EMAAYAGYSFRELLLWMVED 295 AG E+ +V+D Sbjct: 71 VAMKAAGLDLGEVCSRLVDD 90 >gi|117618944|ref|YP_857231.1| carbamoyl phosphate synthase large subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560351|gb|ABK37299.1| carbamoyl-phosphate synthase, large subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMRSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNPEEFVEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVENPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ +S P ++ + + Sbjct: 647 LKLARALEANGVPVIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAVLTAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I+ P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 ITYPLVVRPSYVLGGRAMEIVYDEQDLRRYFAEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P + I E++ +G G Sbjct: 767 CDGTDVVIGGIMEHIEQAGIHSG---DSACSLPPYTLSKAIQDEMREQVRKLALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|291531168|emb|CBK96753.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum 70/3] Length = 1075 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + D D + ++ +PD Sbjct: 32 SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 91 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K + G+ + S Sbjct: 92 NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 151 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 152 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 211 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E D + + +P + ++ + Sbjct: 212 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 270 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ ++I G F +P + ++ +EIN + T S + G+ Sbjct: 271 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 322 Score = 49.5 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 99/299 (33%), Gaps = 33/299 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL+ GF+ + D D S L L + + +H G++ Sbjct: 584 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 642 Query: 72 -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122 L+ + + L+ D+ + ++ G+P+ S + ++ + Sbjct: 643 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALEIAN 702 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ D+ + + + + +LI++++ Sbjct: 703 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 759 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCR 241 DA D VP + S +S +LP+ + ++ + Sbjct: 760 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSLNLTEKQVTTIKDYTKKIAVEMNVC 819 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+ + V+ LE N + T P ++ + +L ++ + + Sbjct: 820 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCNINMVQLATQIITSSLTGK 872 >gi|167750864|ref|ZP_02422991.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702] gi|167656043|gb|EDS00173.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702] Length = 1072 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E D + + +P + ++ + Sbjct: 209 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ ++I G F +P + ++ +EIN + T S + G+ Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 319 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 98/299 (32%), Gaps = 33/299 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL+ GF+ + D D S L L + + +H G++ Sbjct: 581 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 639 Query: 72 -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122 L+ + + L+ D+ + ++ G+P+ S + + + Sbjct: 640 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALKIAN 699 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ D+ + + + + +LI++++ Sbjct: 700 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 756 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241 DA D VP + S +S +LP+ + ++ + Sbjct: 757 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVC 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 G+ + V+ LE N + T P ++ + +L ++ + + Sbjct: 817 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQIITSSLTGK 869 >gi|332978288|gb|EGK15016.1| carbamoyl-phosphate synthase, large subunit [Psychrobacter sp. 1501(2011)] Length = 1090 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVEQIIDKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A ++ D+ Q + G+ + + Sbjct: 89 TMGGQTALNCALDLDKNGVLKKYNVELIGASKDAIEMAEDRDLFDQAMKRIGLECPRAEI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + QLLI++ Sbjct: 149 AETMEQAFEIQAKLGFPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KPD Sbjct: 590 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPDGVIVQF 649 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + Sbjct: 650 GGQTPLKLARSLEAAGVNIIGTSPDAIDRAEDRERFQHMIHQLNLIQPPNALATSMEDGL 709 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L + ++ +L+++++D IE+ Sbjct: 710 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEEELKHYLRTAVQASNEAPVLLDRFLDDAIEV 769 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + +I E++ + Sbjct: 770 DVDCVSDGNEVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSEEICDEMRAQTIAMAKE 826 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 827 LGVVGLMNVQFAV--KDGTVYILEVNPRAART----VPFVSKCIGISLAQIAAR 874 >gi|313672969|ref|YP_004051080.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939725|gb|ADR18917.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 1077 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVG------------LVLAHLKPDLAFN 56 SG AL++ G+KV I D + + ++ +PD Sbjct: 29 SGTQALKALKEEGYKVVLINSNPATIMTDPEFADATYIEPLTVECAEKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----S 110 + G + L G A+ + R + + + Sbjct: 89 TVGGQTALNLALDLHKHGVLDRYNVELIGAKVDAIKKAEDRELFKAAMYKIGLEMPKSAY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + MD+ I P +I+P G V + L + ++L+E+ Sbjct: 149 VKSFEEGMDAIVNIGFPAIIRPSFTLGGTGGNVAYNMEEYKRYLEWGLEASPVGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SILGWKEYELEVMRDLKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQYMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 IKIMREIGVDTGGSNVQFATDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ AL + G++ I D D S Sbjct: 563 VVILGGGPN-------RIGQGIEFDYCCVHACYALSEIGYETIMINCNPETVSTDYDTSD 615 Query: 43 GL------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L ++ KP G V + I T + A Sbjct: 616 RLYFEPLTKEHVLNIIDKEKPVGVIVQFGGQTPLKLSVPLEKAGVRILGTSPDSIDIAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P I P V++P + ++ +++ Sbjct: 676 RERFKKLVEKLGILQPNNGIARNPEEAFKIAEEIGYPVVVRPSYVLGGRAMEIVYDSEAL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + + +LI++++D IEL + D V + + Sbjct: 736 ANYMKFAVEASEKHPVLIDKFLDNAIELDVDAISDGETVVVAGIMQHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I DI +V ++ + G+ F ++ LE+N + T Sbjct: 793 SACSIPPRTISEDIKIKVIKITKQLAYELKVLGLMNIQFAI--KDNDIYILEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G +L Sbjct: 851 ----VPFVSKTIGVPLAKL 865 >gi|270263912|ref|ZP_06192180.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13] gi|270042105|gb|EFA15201.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13] Length = 1074 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVHRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|78358083|ref|YP_389532.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220488|gb|ABB39837.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 351 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 92/329 (27%), Gaps = 44/329 (13%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72 L +A AL G + + + L +A L PD+ FN++ G+ + Sbjct: 22 LLQARAVHDALIRRGHAAELLSMTLDLHAASLRIAALNPDVVFNLVEELDGDIAMAPLAP 81 Query: 73 ELLEIPYTHSGI--------------LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 L L+ + + V++ GV L Sbjct: 82 ALFAHAGIPFTGADAASMTLSGSKLLCKQILTGADICTPAWVTADGVCGGMGDLPRTADA 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 V + G IV + L HG EQYV+G E Sbjct: 142 FIPGRYLCKSVHEHASLGLDDSCIVDAVQTGDVMAALMRCRTRHGGTWFAEQYVEGREFN 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSY---------ELKYSSLNSTHVLPAKIPLDIYKEV-- 227 + D + V + + +F Y +S D E Sbjct: 202 IAAIADGNGGVHVLPCAEIEFRGYAPERPRIVGYAAKWHQDSFECSNTVRRFDFCAEDSA 261 Query: 228 -----QRLAFLAHQAIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEM 277 + + +A G G +R DF +++N P + P + Sbjct: 262 LLELLRTVTVRCWRAFGLAGYARIDFRVKGDGSPQAPYIPCVIDVNSNPCIAPDAGLAAA 321 Query: 278 AAYAGYSFRELLLWMVEDAS------CLR 300 A G + L+ +V+ A C R Sbjct: 322 AEKGGMDYAGLVEGIVQAAVKEDHPPCRR 350 >gi|238795188|ref|ZP_04638775.1| Carbamoyl-phosphate synthase large chain [Yersinia intermedia ATCC 29909] gi|238725475|gb|EEQ17042.1| Carbamoyl-phosphate synthase large chain [Yersinia intermedia ATCC 29909] Length = 1077 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|134298153|ref|YP_001111649.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum reducens MI-1] gi|134050853|gb|ABO48824.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum reducens MI-1] Length = 1074 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNV 57 G AL + G +V + D+ S+ ++A KPD Sbjct: 30 GTQACKALREEGIRVVLVNSNPATIMTDADIADVVYVEPLTWQSIEKIIAKEKPDGLLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V Q IL+ + + + + D+ R+ + +P Sbjct: 90 LGGQTGLNMAVELAEQGILDKYGVTLLGTTLETIKRAEDRELFRATMLEIGEPIPESTIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G ++K ++ + + + +Q+L+E+ Sbjct: 150 STLEECIEFANKIGYPLIVRPAYTLGGTGGGIVKDEKELTATCHRGLKMSMINQVLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + D + + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDNADNCITICNMENIDPVGVHTGDSIVVAPSQTLADRE-YQMLRTAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKVAGGCNVQFALDPHSMEYIVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 17/271 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ I V ++ KP G + ++I T + Sbjct: 608 DKLYFEPLTI---EDVMNIIEKEKPLGVIVQFGGQTAINLAGDLAEMGVKILGTPIEGID 664 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +A +K + + P +++P + ++ Sbjct: 665 AAEDREKFEKLLKGLGIPQTEGKTATNVEEAQKIAAELGFPVLVRPSYVLGGRAMEIVYN 724 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L+++YV G E+ +GD + + + Sbjct: 725 EDQLLKYMSTAVQVSPKHPVLVDKYVRGKEVEVDAIGDGENIFIPGIMEHIERAG---VH 781 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263 S + P + ++V + + G+ ++ VF LE+N Sbjct: 782 SGDSIAVYPPQSLNQQEMEQVVDYTLRIGKGLKICGLMNIQYVVGEEG--VFVLEVNPRA 839 Query: 264 --VQPGMTPVSIFPEMAAYA----GYSFREL 288 P ++ V+ P + A G S ++ Sbjct: 840 SRTVPVLSKVTGVPMVQAATRCMLGNSLSDM 870 >gi|326576363|gb|EGE26272.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis O35E] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|326570906|gb|EGE20930.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis BC7] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|326563560|gb|EGE13819.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis 12P80B1] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPSNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|326562018|gb|EGE12348.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis 103P14B1] gi|326574513|gb|EGE24455.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis 101P30B1] gi|326575899|gb|EGE25822.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis CO72] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|326559682|gb|EGE10093.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis 46P47B1] gi|326560323|gb|EGE10711.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis 7169] gi|326566358|gb|EGE16508.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis BC1] gi|326570168|gb|EGE20213.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis BC8] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|296113339|ref|YP_003627277.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis RH4] gi|295921033|gb|ADG61384.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis RH4] Length = 1078 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L + A + D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + QLLI++ Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + + Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L + +H +L++ ++D IE+ Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + DI +++R + Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868 >gi|189425138|ref|YP_001952315.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ] gi|189421397|gb|ACD95795.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ] Length = 1082 Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPEILAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V IL+ + + + A + D+ KQ + G+ V S Sbjct: 89 TLGGQTALNTAVSVAEMGILDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLSVPKSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M+ + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNRTEVMEVIKQVGFPAIIRPSFTLGGTGGGIAYNMEEYERMAMVGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 90/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A P G Sbjct: 594 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTQEDVLEIVAKENPVGVIVQFGGQTP 653 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + + + Sbjct: 654 LKLSVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLDLLQPANGTARSFEEAEEVANR 713 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P V++P + ++ +++ + + + +L+++++D IE+ + Sbjct: 714 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILVDKFLDAAIEIDVDAL 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + P + ++ EV+R + + G Sbjct: 774 CDGKQVVIGGIMEHIEEAGIHSG---DSACSLPPYSLSQELIAEVRRQTEIMALELNVIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + ++ LE+N + T P ++ G ++ + Sbjct: 831 LMNVQYAV--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAARI 874 >gi|324012354|gb|EGB81573.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 60-1] Length = 616 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|320197524|gb|EFW72138.1| Carbamoyl-phosphate synthase large chain [Escherichia coli WV_060327] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|315293394|gb|EFU52746.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 153-1] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSARLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEVVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|300984136|ref|ZP_07176887.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 200-1] gi|300306761|gb|EFJ61281.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 200-1] Length = 617 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|300948636|ref|ZP_07162720.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 116-1] gi|300956962|ref|ZP_07169214.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 175-1] gi|301024778|ref|ZP_07188416.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 196-1] gi|331650924|ref|ZP_08351952.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718] gi|299880268|gb|EFI88479.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 196-1] gi|300316252|gb|EFJ66036.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 175-1] gi|300451862|gb|EFK15482.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 116-1] gi|323939747|gb|EGB35949.1| carbamoyl-phosphate synthase [Escherichia coli E482] gi|331051378|gb|EGI23427.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|331645139|ref|ZP_08346250.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605] gi|281177246|dbj|BAI53576.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE15] gi|330909882|gb|EGH38392.1| carbamoyl-phosphate synthase large chain [Escherichia coli AA86] gi|331045896|gb|EGI18015.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|218687908|ref|YP_002396120.1| carbamoyl phosphate synthase large subunit [Escherichia coli ED1a] gi|218425472|emb|CAR06254.1| carbamoyl-phosphate synthase large subunit [Escherichia coli ED1a] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|215485194|ref|YP_002327625.1| carbamoyl phosphate synthase large subunit [Escherichia coli O127:H6 str. E2348/69] gi|306815369|ref|ZP_07449518.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101] gi|312966153|ref|ZP_07780379.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75] gi|331661071|ref|ZP_08362003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA206] gi|215263266|emb|CAS07581.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O127:H6 str. E2348/69] gi|305851031|gb|EFM51486.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101] gi|312289396|gb|EFR17290.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75] gi|323190287|gb|EFZ75563.1| carbamoyl-phosphate synthase large chain [Escherichia coli RN587/1] gi|324008377|gb|EGB77596.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 57-2] gi|331052113|gb|EGI24152.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA206] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|170768490|ref|ZP_02902943.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii TW07627] gi|170122594|gb|EDS91525.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii TW07627] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|91209092|ref|YP_539078.1| carbamoyl phosphate synthase large subunit [Escherichia coli UTI89] gi|117622323|ref|YP_851236.1| carbamoyl phosphate synthase large subunit [Escherichia coli APEC O1] gi|218556971|ref|YP_002389884.1| carbamoyl phosphate synthase large subunit [Escherichia coli S88] gi|237704175|ref|ZP_04534656.1| carbamoyl-phosphate synthase subunit large [Escherichia sp. 3_2_53FAA] gi|91070666|gb|ABE05547.1| Carbamoyl-phosphate synthase large chain [Escherichia coli UTI89] gi|115511447|gb|ABI99521.1| carbamoyl-phosphate synthase large subunit [Escherichia coli APEC O1] gi|218363740|emb|CAR01400.1| carbamoyl-phosphate synthase large subunit [Escherichia coli S88] gi|226902087|gb|EEH88346.1| carbamoyl-phosphate synthase subunit large [Escherichia sp. 3_2_53FAA] gi|294490354|gb|ADE89110.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli IHE3034] gi|307629605|gb|ADN73909.1| carbamoyl phosphate synthase large subunit [Escherichia coli UM146] gi|315285004|gb|EFU44449.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 110-3] gi|315298450|gb|EFU57705.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 16-3] gi|323950478|gb|EGB46356.1| carbamoyl-phosphate synthase [Escherichia coli H252] gi|323955229|gb|EGB51002.1| carbamoyl-phosphate synthase [Escherichia coli H263] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|26245956|ref|NP_751995.1| carbamoyl phosphate synthase large subunit [Escherichia coli CFT073] gi|227885069|ref|ZP_04002874.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972] gi|300981005|ref|ZP_07175282.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 45-1] gi|301048415|ref|ZP_07195442.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 185-1] gi|33301028|sp|Q8FLB0|CARB_ECOL6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|26106353|gb|AAN78539.1|AE016755_39 Carbamoyl-phosphate synthase large chain [Escherichia coli CFT073] gi|222031865|emb|CAP74603.1| Carbamoyl-phosphate synthase large chain [Escherichia coli LF82] gi|227837898|gb|EEJ48364.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972] gi|300299708|gb|EFJ56093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 185-1] gi|300409041|gb|EFJ92579.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 45-1] gi|307551877|gb|ADN44652.1| carbamoyl phosphate synthase, large subunit [Escherichia coli ABU 83972] gi|312944639|gb|ADR25466.1| carbamoyl phosphate synthase large subunit [Escherichia coli O83:H1 str. NRG 857C] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEVVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|110640245|ref|YP_667973.1| carbamoyl phosphate synthase large subunit [Escherichia coli 536] gi|191174098|ref|ZP_03035612.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11] gi|110341837|gb|ABG68074.1| carbamoyl-phosphate synthase large chain [Escherichia coli 536] gi|190905592|gb|EDV65217.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|157368959|ref|YP_001476948.1| carbamoyl phosphate synthase large subunit [Serratia proteamaculans 568] gi|157320723|gb|ABV39820.1| carbamoyl-phosphate synthase, large subunit [Serratia proteamaculans 568] Length = 1074 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWKVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVQRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVQLAKVAAR 867 >gi|194446768|ref|YP_002039297.1| carbamoyl phosphate synthase large subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405431|gb|ACF65653.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1075 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILLNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|309792429|ref|ZP_07686895.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris trichoides DG6] gi|308225539|gb|EFO79301.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris trichoides DG6] Length = 1076 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++A +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIAKERPDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ + + + A ++ D+ K + G+ V S Sbjct: 89 TVGGQTALNLAIDLHEAGVLQRYSVELIGASVNAVRVAEDRQLFKDKMLEIGLSVARSGT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + Q+LIE+ Sbjct: 149 AHSLDEALTIVGETGFPAIIRPSFTLGGAGGGIAYNIEEFREIVERGLDASPVTQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + +D I + + + + + + Sbjct: 209 SVLGWKEFEMEVMRDRMDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYQQMRDQS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P +++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRAVGVETGGSNVQFAVNPHDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L D G++ + D D V ++ +PD G Sbjct: 593 LRDMGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNIVDVERPDGVLVQFGGQTPL 652 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + A D+ + P S + I Sbjct: 653 KLARALEAAGVPIWGTPPDAIDLAEDRDRFGALLDRLGIPAPAHGSATSWEEARAAAEQI 712 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P V++P + ++ + S+ + ++ + + +LI+++++ + D Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDETSLERYMREAVAASPEHPILIDRFLED---AFEMDVD 769 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDIYKEVQRLAFLAHQAIGCRGI 243 A D + + V S +S V+P + + + ++R + +G G+ Sbjct: 770 AVSDGSSVIVAGIMEQIELAGVHSGDSACVIPTYMVAPEHVETLRRYTEQLARELGVVGL 829 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + V+ LE+N + T P +A G Sbjct: 830 MNIQYAM--KDDIVYVLEVNPRASRTT----PFVAKATG 862 >gi|291613525|ref|YP_003523682.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans lithotrophicus ES-1] gi|291583637|gb|ADE11295.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans lithotrophicus ES-1] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G++V + D + + V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPNMADATYIEPITWQMVEKIIAKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A ++ D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYNVEMIGASRDAIDMAEDREKFKQAMTRIGLASARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q ++ P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQQVMGFPTIIRPSFTMGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFSINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 38/289 (13%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V V+A KP Sbjct: 577 VHAALAMREDGYETIMLNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPIGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T ++ A + ++ + P + + Sbjct: 637 GGQTPLKLAHGLAKNGVPIIGTTPDMIDMAEDRARFQAMLRELNLKQPPNRTASNVADGV 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-----QYVD 173 I P V++P + +I + + + + + D Sbjct: 697 AGAAEIGYPLVMRPSNVLGGRAMEIIHAQSDLERYMRDAEEMSKTYPERMPILLDRFLND 756 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 IE+ + D + + + +S ++ + P + + E++R Sbjct: 757 AIEVDVDAVSDGKQVIIGGIMEHIEQAG---VHSGDSACSLPPYSLSAKLQDELRRQTVA 813 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 +++ G+ F V+ LE+N P ++ + P Sbjct: 814 MAKSLNVVGLMNVQFAI--QGETVYVLEVNPRASRTVPYVSKATSVPLA 860 >gi|261253796|ref|ZP_05946369.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP 102891] gi|260937187|gb|EEX93176.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP 102891] Length = 1076 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 91/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857 >gi|259907380|ref|YP_002647736.1| carbamoyl phosphate synthase large subunit [Erwinia pyrifoliae Ep1/96] gi|224963002|emb|CAX54485.1| Carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae Ep1/96] gi|283477213|emb|CAY73120.1| carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae DSM 12163] Length = 1084 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ + Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAM 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I +++ +G RG Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867 >gi|188532866|ref|YP_001906663.1| carbamoyl phosphate synthase large subunit [Erwinia tasmaniensis Et1/99] gi|188027908|emb|CAO95765.1| Carbamoyl-phosphate synthase large chain [Erwinia tasmaniensis Et1/99] Length = 1074 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ + Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIEMAVEKAAI 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDVMREQVKKLAFELGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867 >gi|89072560|ref|ZP_01159132.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp. SKA34] gi|89051664|gb|EAR57117.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp. SKA34] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + ++ R + + + G+ + Sbjct: 89 TMGGQTALNCALDLEKYGVLEEFNVEMIGATADAIDKAENRSRFDKAMKAIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 ATTMEEAYKVLEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGIDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCTIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVSTMEQAIEKSRD 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|269960252|ref|ZP_06174627.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3] gi|269835059|gb|EEZ89143.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3] Length = 1077 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 44.5 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857 >gi|237748686|ref|ZP_04579166.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13] gi|229380048|gb|EEO30139.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13] Length = 1076 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPETADVTFIEPITWKVVERIIEQERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLYRNGVLEKYNVELIGASPEAIDKAEDRAKFKEAMTKIGLSSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D Q + P +I+P G + ++ + + ++LLIE+ Sbjct: 149 AHTLEEAWDVQKQLGFPVIIRPSFTLGGTGGGIAYNEEEFETICRRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + +D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDRVDNCIIVCSIENLDPMGVHTGDSITVAPSQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 51/319 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + VL GG + G+ A A+ + G++ + D+ Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDISD 608 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + + I T ++ +A Sbjct: 609 RLYFEPLTLEDVLEIVDKEKPYGVIVQYGGQTPLKLALDLEANGVPIVGTSPDMIDAAED 668 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ S+ Sbjct: 669 RERFQKLLKDLDLRQPPNRTARTEEEALKLAEEIGYPIVVRPSYVLGGRAMEIVHDQASL 728 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D IE+ + D + + +S Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQAG---VHSGD 785 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRK----VFWLEIN 263 ++ + P + +E++R L + + G+ F ++ K V+ LE+N Sbjct: 786 SACSLPPYSLSKATIEELKRQTTLMAKGLNVVGLMNVQFAIQHQEVNGKLQDVVYVLEVN 845 Query: 264 VQPGMTPVSIFPEMAAYAG 282 + T P ++ G Sbjct: 846 PRASRT----VPFVSKATG 860 >gi|304414251|ref|ZP_07395619.1| carbamoyl phosphate synthase large subunit [Candidatus Regiella insecticola LSR1] gi|304283465|gb|EFL91861.1| carbamoyl phosphate synthase large subunit [Candidatus Regiella insecticola LSR1] Length = 1083 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGVQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVAMIGATAAAIDKAEDRRLFDIAMKKIGLATARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVVAEVGFPCIIRPSFTMGGTGGGIAYNHEEFQEICQRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P+ G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPEGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + SA + P ++ + ++ Sbjct: 652 LKLARELEAAGVPIIGTRPDAIDSAEDRGLFQQAVNDLGLKQPANATVTALEDAVAKANI 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + + ++ +L+++++D V Sbjct: 712 LGYPLVVRPSYVLGGRAMEIVYDEVDLRCYFQSAVNVSNDAPVLLDRFLDD---AVEVDV 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA + I +++ + RG Sbjct: 769 DAICDGEKVLIGGIMEHIEQAGVHSGDSACSLPAYTLSENIQNTLRQQVEKLAFKLNVRG 828 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ +E+N + T P ++ G ++ Sbjct: 829 LMNVQFAVKDQD--VYLIEVNPRAART----VPFVSKATGVPLAKIAAR 871 >gi|327392679|dbj|BAK10101.1| carbamoyl-phosphate synthase large chain CarB [Pantoea ananatis AJ13355] Length = 1076 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA DI +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|291616228|ref|YP_003518970.1| CarB [Pantoea ananatis LMG 20103] gi|291151258|gb|ADD75842.1| CarB [Pantoea ananatis LMG 20103] Length = 1090 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 43 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 102 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + S G+ S Sbjct: 103 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 162 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 163 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 222 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 223 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 282 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 283 LAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 338 Query: 291 WM 292 + Sbjct: 339 KL 340 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 602 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 661 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 662 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 721 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 722 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 778 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA DI +++ + RG Sbjct: 779 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRG 838 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 839 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 881 >gi|146297226|ref|YP_001180997.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410802|gb|ABP67806.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1077 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A DK + P S + Sbjct: 644 INMASYLAKNGVKILGTSMESIDIAEDRDKFLNLLKSLGIPYPQGGSAYNLEDAIKVAEQ 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ Q + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYNRQELERYIKAAMEISIKHPILIDKYIVGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALKVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + +L+ + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGMLDKYNVKLLGTSLETIKKAEDRELFKKTMLEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHNVEEALEFAKEVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSQDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 AINIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|333011414|gb|EGK30828.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-272] gi|333021653|gb|EGK40902.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-227] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDVPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|332762592|gb|EGJ92857.1| carbamoyl-phosphate synthase large chain [Shigella flexneri 4343-70] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|320173371|gb|EFW48573.1| Carbamoyl-phosphate synthase large chain [Shigella dysenteriae CDC 74-1112] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|331681416|ref|ZP_08382053.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299] gi|331081637|gb|EGI52798.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|331671552|ref|ZP_08372350.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA280] gi|331071397|gb|EGI42754.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA280] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|331661399|ref|ZP_08362323.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA143] gi|331061314|gb|EGI33277.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA143] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|301330201|ref|ZP_07222861.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 78-1] gi|300843763|gb|EFK71523.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 78-1] Length = 618 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|301019783|ref|ZP_07183927.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 69-1] gi|300399070|gb|EFJ82608.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 69-1] Length = 623 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|300900947|ref|ZP_07119081.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 198-1] gi|300355574|gb|EFJ71444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 198-1] Length = 618 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|293408125|ref|ZP_06651965.1| carbamoyl-phosphate synthase [Escherichia coli B354] gi|291472376|gb|EFF14858.1| carbamoyl-phosphate synthase [Escherichia coli B354] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|284919814|emb|CBG32869.1| carbamoyl-phosphate synthase large chain [Escherichia coli 042] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDSSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|260866183|ref|YP_003232585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O111:H- str. 11128] gi|257762539|dbj|BAI34034.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O111:H- str. 11128] gi|323176339|gb|EFZ61931.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1180] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|254037449|ref|ZP_04871526.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43] gi|226840555|gb|EEH72557.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|218703293|ref|YP_002410812.1| carbamoyl phosphate synthase large subunit [Escherichia coli UMN026] gi|293403106|ref|ZP_06647203.1| carB [Escherichia coli FVEC1412] gi|298378634|ref|ZP_06988518.1| carbamoyl-phosphate synthase large subunit [Escherichia coli FVEC1302] gi|218430390|emb|CAR11257.1| carbamoyl-phosphate synthase large subunit [Escherichia coli UMN026] gi|291430021|gb|EFF03035.1| carB [Escherichia coli FVEC1412] gi|298280968|gb|EFI22469.1| carbamoyl-phosphate synthase large subunit [Escherichia coli FVEC1302] Length = 1072 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|218698453|ref|YP_002406082.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI39] gi|218368439|emb|CAR16175.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI39] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|170021609|ref|YP_001726563.1| carbamoyl phosphate synthase large subunit [Escherichia coli ATCC 8739] gi|301648401|ref|ZP_07248137.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 146-1] gi|307136636|ref|ZP_07495992.1| carbamoyl phosphate synthase large subunit [Escherichia coli H736] gi|331640482|ref|ZP_08341630.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736] gi|169756537|gb|ACA79236.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli ATCC 8739] gi|301073536|gb|EFK88342.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 146-1] gi|309700246|emb|CBI99534.1| carbamoyl-phosphate synthase large chain [Escherichia coli ETEC H10407] gi|315616190|gb|EFU96809.1| carbamoyl-phosphate synthase large chain [Escherichia coli 3431] gi|323935085|gb|EGB31452.1| carbamoyl-phosphate synthase [Escherichia coli E1520] gi|331040228|gb|EGI12435.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736] gi|332341364|gb|AEE54698.1| carbamoyl-phosphate synthase, large subunit CarB [Escherichia coli UMNK88] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|16128027|ref|NP_414574.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K-12 substr. MG1655] gi|89106917|ref|AP_000697.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K-12 substr. W3110] gi|170079696|ref|YP_001729016.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K-12 substr. DH10B] gi|238899438|ref|YP_002925234.1| carbamoyl-phosphate synthase large subunit [Escherichia coli BW2952] gi|312970126|ref|ZP_07784308.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70] gi|115627|sp|P00968|CARB_ECOLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp gi|4929937|pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp gi|4929939|pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp gi|4929941|pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With The Atp Analog Amppnp gi|6730116|pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s gi|6730118|pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s gi|6730120|pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s gi|6730122|pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s gi|6730126|pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine gi|6730128|pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine gi|6730130|pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine gi|6730132|pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase: Small Subunit Mutant C269s With Bound Glutamine gi|6730187|pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde gi|6730189|pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde gi|6730191|pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde gi|6730193|pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde gi|18158903|pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl Phosphate Synthetase By The Antibiotic Acivicin gi|18158905|pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl Phosphate Synthetase By The Antibiotic Acivicin gi|18158907|pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl Phosphate Synthetase By The Antibiotic Acivicin gi|18158909|pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl Phosphate Synthetase By The Antibiotic Acivicin gi|55669821|pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'- Monophosphate gi|55669823|pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'- Monophosphate gi|55669825|pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'- Monophosphate gi|55669827|pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'- Monophosphate gi|41079|emb|CAA24744.1| unnamed protein product [Escherichia coli K-12] gi|145464|gb|AAA23539.1| carbamoyl-phosphate synthetase subunit B [Escherichia coli] gi|1786216|gb|AAC73144.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K-12 substr. MG1655] gi|21321915|dbj|BAB96602.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K12 substr. W3110] gi|169887531|gb|ACB01238.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str. K-12 substr. DH10B] gi|238860105|gb|ACR62103.1| carbamoyl-phosphate synthase large subunit [Escherichia coli BW2952] gi|260450758|gb|ACX41180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli DH1] gi|310337624|gb|EFQ02735.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70] gi|315134728|dbj|BAJ41887.1| carbamoyl phosphate synthase large subunit [Escherichia coli DH1] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|15799715|ref|NP_285727.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 EDL933] gi|15829290|ref|NP_308063.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 str. Sakai] gi|24111479|ref|NP_705989.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a str. 301] gi|30061601|ref|NP_835772.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a str. 2457T] gi|110804100|ref|YP_687620.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 5 str. 8401] gi|168751711|ref|ZP_02776733.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4113] gi|168756859|ref|ZP_02781866.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4401] gi|168762795|ref|ZP_02787802.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4501] gi|168766723|ref|ZP_02791730.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4486] gi|168776951|ref|ZP_02801958.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4196] gi|168781732|ref|ZP_02806739.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4076] gi|168785086|ref|ZP_02810093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC869] gi|168801916|ref|ZP_02826923.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC508] gi|195937706|ref|ZP_03083088.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 str. EC4024] gi|208806580|ref|ZP_03248917.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4206] gi|208812930|ref|ZP_03254259.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4045] gi|208818860|ref|ZP_03259180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4042] gi|209396701|ref|YP_002268640.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4115] gi|217324642|ref|ZP_03440726.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. TW14588] gi|254791169|ref|YP_003076006.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 str. TW14359] gi|256025350|ref|ZP_05439215.1| carbamoyl phosphate synthase large subunit [Escherichia sp. 4_1_40B] gi|261226791|ref|ZP_05941072.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255194|ref|ZP_05947727.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 str. FRIK966] gi|291280856|ref|YP_003497674.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7 str. CB9615] gi|293417908|ref|ZP_06660530.1| carbamoyl-phosphate synthase [Escherichia coli B185] gi|54036830|sp|P63738|CARB_SHIFL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|54040878|sp|P63737|CARB_ECO57 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|12512719|gb|AAG54335.1|AE005180_2 carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 str. EDL933] gi|13359492|dbj|BAB33459.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 str. Sakai] gi|24050230|gb|AAN41696.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a str. 301] gi|30039843|gb|AAP15577.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a str. 2457T] gi|110613648|gb|ABF02315.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 5 str. 8401] gi|187767704|gb|EDU31548.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4196] gi|188014318|gb|EDU52440.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4113] gi|189000773|gb|EDU69759.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4076] gi|189356056|gb|EDU74475.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4401] gi|189364139|gb|EDU82558.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4486] gi|189366979|gb|EDU85395.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4501] gi|189375070|gb|EDU93486.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC869] gi|189376018|gb|EDU94434.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC508] gi|208726381|gb|EDZ75982.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4206] gi|208734207|gb|EDZ82894.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4045] gi|208738983|gb|EDZ86665.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4042] gi|209158101|gb|ACI35534.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. EC4115] gi|209748710|gb|ACI72662.1| carbamoyl-phosphate synthase large subunit [Escherichia coli] gi|209748712|gb|ACI72663.1| carbamoyl-phosphate synthase large subunit [Escherichia coli] gi|209748714|gb|ACI72664.1| carbamoyl-phosphate synthase large subunit [Escherichia coli] gi|217320863|gb|EEC29287.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli O157:H7 str. TW14588] gi|254590569|gb|ACT69930.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O157:H7 str. TW14359] gi|281599394|gb|ADA72378.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri 2002017] gi|290760729|gb|ADD54690.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7 str. CB9615] gi|291430626|gb|EFF03624.1| carbamoyl-phosphate synthase [Escherichia coli B185] gi|313646591|gb|EFS11052.1| carbamoyl-phosphate synthase large chain [Shigella flexneri 2a str. 2457T] gi|320190447|gb|EFW65097.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7 str. EC1212] gi|320642073|gb|EFX11424.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 str. G5101] gi|320658159|gb|EFX25888.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663468|gb|EFX30752.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7 str. USDA 5905] gi|320668780|gb|EFX35575.1| carbamoyl phosphate synthase large subunit [Escherichia coli O157:H7 str. LSU-61] gi|326345250|gb|EGD68993.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7 str. 1125] gi|326346897|gb|EGD70631.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7 str. 1044] gi|332762315|gb|EGJ92582.1| carbamoyl-phosphate synthase large chain [Shigella flexneri 2747-71] gi|332764874|gb|EGJ95102.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-671] gi|332768820|gb|EGJ98999.1| carB [Shigella flexneri 2930-71] gi|333009202|gb|EGK28658.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-218] gi|333010524|gb|EGK29957.1| carbamoyl-phosphate synthase large chain [Shigella flexneri VA-6] gi|333022398|gb|EGK41636.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-304] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|188493701|ref|ZP_03000971.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli 53638] gi|188488900|gb|EDU64003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli 53638] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|187733854|ref|YP_001878857.1| carbamoyl phosphate synthase large subunit [Shigella boydii CDC 3083-94] gi|187430846|gb|ACD10120.1| carbamoyl-phosphate synthase, large subunit [Shigella boydii CDC 3083-94] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|74310651|ref|YP_309070.1| carbamoyl phosphate synthase large subunit [Shigella sonnei Ss046] gi|82542649|ref|YP_406596.1| carbamoyl phosphate synthase large subunit [Shigella boydii Sb227] gi|157159012|ref|YP_001461202.1| carbamoyl phosphate synthase large subunit [Escherichia coli E24377A] gi|157159501|ref|YP_001456819.1| carbamoyl phosphate synthase large subunit [Escherichia coli HS] gi|191168899|ref|ZP_03030670.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A] gi|193066203|ref|ZP_03047256.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22] gi|193070991|ref|ZP_03051920.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E110019] gi|194429873|ref|ZP_03062385.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171] gi|194439699|ref|ZP_03071769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli 101-1] gi|209917224|ref|YP_002291308.1| carbamoyl phosphate synthase large subunit [Escherichia coli SE11] gi|218552617|ref|YP_002385530.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI1] gi|218693504|ref|YP_002401171.1| carbamoyl phosphate synthase large subunit [Escherichia coli 55989] gi|253774934|ref|YP_003037765.1| carbamoyl phosphate synthase large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160159|ref|YP_003043267.1| carbamoyl phosphate synthase large subunit [Escherichia coli B str. REL606] gi|256020127|ref|ZP_05433992.1| carbamoyl phosphate synthase large subunit [Shigella sp. D9] gi|260842270|ref|YP_003220048.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O103:H2 str. 12009] gi|260853243|ref|YP_003227134.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O26:H11 str. 11368] gi|293476696|ref|ZP_06665104.1| carbamoyl-phosphate synthase [Escherichia coli B088] gi|300816067|ref|ZP_07096290.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 107-1] gi|300821963|ref|ZP_07102107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 119-7] gi|300905435|ref|ZP_07123202.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 84-1] gi|300919583|ref|ZP_07136075.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 115-1] gi|300924019|ref|ZP_07140019.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 182-1] gi|300928670|ref|ZP_07144189.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 187-1] gi|301305077|ref|ZP_07211178.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 124-1] gi|307311514|ref|ZP_07591156.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W] gi|309797799|ref|ZP_07692183.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 145-7] gi|331666266|ref|ZP_08367147.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA271] gi|331680603|ref|ZP_08381262.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591] gi|332281281|ref|ZP_08393694.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9] gi|73854128|gb|AAZ86835.1| carbamoyl-phosphate synthase large subunit [Shigella sonnei Ss046] gi|81244060|gb|ABB64768.1| carbamoyl-phosphate synthase large subunit [Shigella boydii Sb227] gi|157065181|gb|ABV04436.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli HS] gi|157081042|gb|ABV20750.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E24377A] gi|190901065|gb|EDV60843.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A] gi|192926128|gb|EDV80769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22] gi|192955721|gb|EDV86195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E110019] gi|194412092|gb|EDX28402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171] gi|194421384|gb|EDX37401.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli 101-1] gi|209910483|dbj|BAG75557.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE11] gi|218350236|emb|CAU95919.1| carbamoyl-phosphate synthase large subunit [Escherichia coli 55989] gi|218359385|emb|CAQ96924.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI1] gi|242375873|emb|CAQ30553.1| carB, subunit of carbamoyl phosphate synthetase [Escherichia coli BL21(DE3)] gi|253325978|gb|ACT30580.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972060|gb|ACT37731.1| carbamoyl-phosphate synthase large subunit [Escherichia coli B str. REL606] gi|253976269|gb|ACT41939.1| carbamoyl-phosphate synthase large subunit [Escherichia coli BL21(DE3)] gi|257751892|dbj|BAI23394.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O26:H11 str. 11368] gi|257757417|dbj|BAI28914.1| carbamoyl-phosphate synthase large subunit [Escherichia coli O103:H2 str. 12009] gi|291321149|gb|EFE60591.1| carbamoyl-phosphate synthase [Escherichia coli B088] gi|300402713|gb|EFJ86251.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 84-1] gi|300413329|gb|EFJ96639.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 115-1] gi|300419743|gb|EFK03054.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 182-1] gi|300463339|gb|EFK26832.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 187-1] gi|300525563|gb|EFK46632.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 119-7] gi|300531274|gb|EFK52336.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 107-1] gi|300839684|gb|EFK67444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 124-1] gi|306908493|gb|EFN38991.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W] gi|308118628|gb|EFO55890.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 145-7] gi|315059258|gb|ADT73585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli W] gi|315255693|gb|EFU35661.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 85-1] gi|320186145|gb|EFW60887.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri CDC 796-83] gi|320200450|gb|EFW75036.1| Carbamoyl-phosphate synthase large chain [Escherichia coli EC4100B] gi|323157908|gb|EFZ44011.1| carbamoyl-phosphate synthase large chain [Escherichia coli EPECa14] gi|323160049|gb|EFZ46012.1| carbamoyl-phosphate synthase large chain [Escherichia coli E128010] gi|323166081|gb|EFZ51860.1| carbamoyl-phosphate synthase large chain [Shigella sonnei 53G] gi|323171452|gb|EFZ57099.1| carbamoyl-phosphate synthase large chain [Escherichia coli LT-68] gi|323181729|gb|EFZ67142.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1357] gi|323380185|gb|ADX52453.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli KO11] gi|323945770|gb|EGB41817.1| carbamoyl-phosphate synthase [Escherichia coli H120] gi|323959981|gb|EGB55627.1| carbamoyl-phosphate synthase [Escherichia coli H489] gi|323970706|gb|EGB65960.1| carbamoyl-phosphate synthase [Escherichia coli TA007] gi|324017700|gb|EGB86919.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 117-3] gi|331066477|gb|EGI38354.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli TA271] gi|331072066|gb|EGI43402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591] gi|332090537|gb|EGI95635.1| carbamoyl-phosphate synthase large chain [Shigella boydii 3594-74] gi|332103633|gb|EGJ06979.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9] Length = 1073 Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|238758985|ref|ZP_04620156.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC 35236] gi|238702796|gb|EEP95342.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC 35236] Length = 1077 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|87121706|ref|ZP_01077593.1| carbamoylphosphate synthetase large subunit [Marinomonas sp. MED121] gi|86162957|gb|EAQ64235.1| carbamoylphosphate synthetase large subunit [Marinomonas sp. MED121] Length = 1071 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + ++V ++ +PD Sbjct: 29 SGAQACKALREEGLRVILVNSNPATIMTDPAMADSTYIEPIEWKTVAKIIEKERPDAVLP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + +E+ + + A ++ P Sbjct: 89 TMGGQTALNCALDLERHGVLAEFDVEMIGATADAIDKAEDRNRFDQAMKAIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + ++LLI++ Sbjct: 149 AHNMEEAYGVQREVGFPCIIRPSFTMGGTGGGIAYNTEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 100/319 (31%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + +L GG + G+ A AL D GF+ + D D Sbjct: 561 VVILGGGPN-------RIGQGIEFDYCCVHAALALRDNGFETIMVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G E + I T + A Sbjct: 614 RLYFEPVTLEDVLEIVRKEKPKGVIVQFGGQTPLKIARALEAEGVPIIGTSPEAIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ +S P ++ + I P V++P + ++ + + Sbjct: 674 RERFQSMIQRLGYKQPNNATVRSTDQALIKAAEIGFPLVVRPSYVLGGRAMEIVYNESEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L++ +++ IE+ + D V + + +S Sbjct: 734 TRYMTTAVKVSNDSPVLLDHFLNAAIEIDIDCISDGKQVVIGGIMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + +++ + +G G+ + +++ +E+N + T Sbjct: 791 SACALPPHSLTQAQQDDIREMIAKMALELGVIGLMNTQLAI--QDGEIYVIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G S ++ Sbjct: 849 ----VPFVSKCIGRSLAQV 863 >gi|257454666|ref|ZP_05619922.1| carbamoyl-phosphate synthase, large subunit [Enhydrobacter aerosaccus SK60] gi|257447976|gb|EEV22963.1| carbamoyl-phosphate synthase, large subunit [Enhydrobacter aerosaccus SK60] Length = 1081 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQTVERIIDKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R+ + + + Sbjct: 89 TMGGQTALNCALDLDKHGVLEKYGCELIGATKDAIEKAEDRNLFDQAMKKIGLECPRAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + QLLI++ Sbjct: 149 AETMEQAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNRDEFVEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGIDPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP+ Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPEGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + Sbjct: 644 GGQTPLKLARALEAAGVHIIGTSPDAIDRAEDRERFQHMIQQLGFTQPPNALATSTEDGI 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L+++++D IE+ Sbjct: 704 VKATQVGYPLVVRPSYVLGGRAMEIVYNENELRRYLREAVQASNEAPVLLDRFLDDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + +I ++ + Sbjct: 764 DVDCISDGTNVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSQEICDVMREQTVAMAKE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + V+ LE+N + T P ++ G S ++ Sbjct: 821 LGVVGLMNVQYAV--KDGVVYILEVNPRASRT----VPFVSKCIGTSLAQVAAR 868 >gi|227892685|ref|ZP_04010490.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047] gi|227865462|gb|EEJ72883.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047] Length = 1062 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 34/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ I+ + V V KP+ G Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + P + + +++ Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLHLNQPQGLTATTHEGVLEA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + L +L++ Y+DG E Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P ++ +++ + + C Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + +V+ +E+N + T P ++ ++ ++ Sbjct: 814 IGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITDIEMAQVATRVI 860 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A +K + VP + Sbjct: 89 TLGGQVGLNMAMELAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + LIE+ Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNREELAEIAKNGLELSPVTECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|298373329|ref|ZP_06983318.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274381|gb|EFI15933.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 1065 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 11/265 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ KPD L G + ++I T + Sbjct: 607 DKLYFEPLTV---EDVMNIIDLEKPDGVIVTLGGQTAINLAEPLHKLGVKIIGTDVEAID 663 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + D P ++ I P +++P + ++ Sbjct: 664 RAENRDSFEKVMNTLGIPQPKGLAVTNIPDGCRVAQDIGYPVLVRPSFVLGGRAMKIVNN 723 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++S+ L + N +L+++Y+ G EL + D + + Sbjct: 724 EESLKKYLQTAVEINVNQPVLVDKYISGKELEVDAICDGRDVFIPGIMEHVERTGIHSG- 782 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 + + + + ++ + IG G+ F+ D VF +E+N + Sbjct: 783 --DSISVYPTFSVSQKVKDKIIDYSVRLGLEIGIIGLFNIQFIADTNDD-VFVIEVNPRS 839 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 840 SRT----VPFLSKATGVDMADIATR 860 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + ++ V ++ +PD Sbjct: 29 GTQACLALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 88 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ ILE ++ + + ++ D+ + V Sbjct: 89 LGGQTGLNLAVQLAKKGILEECDVEILGTSFQSIEMAEDRELFKELCKSLGEPVLPSKIA 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + + + + + Q+L+E+ Sbjct: 149 NSMEEGLAAAAEIGYPVVLRPAFTLGGTGGGFAEDEAEFCELMRNALALSPVHQVLVEKS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T IA+ + ++ + + ++ ++ A Sbjct: 209 IKG-FKEIEYEVIRDKNDTAIAICNMENIDPVGVHTGDSMVVCPSQTLTNKEFQLLRDSA 267 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DPLS + +E+N P ++ S + +GY + Sbjct: 268 LKIIRALKIEGGCNVQFALDPLSFNYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 323 Query: 292 M 292 + Sbjct: 324 I 324 >gi|330829113|ref|YP_004392065.1| carbamoyl-phosphate synthase, large subunit [Aeromonas veronii B565] gi|328804249|gb|AEB49448.1| Carbamoyl-phosphate synthase, large subunit [Aeromonas veronii B565] Length = 1074 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMRSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q ++ P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNTEEFVEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 44.9 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ +S P ++ + Sbjct: 647 LKLARALEANGVPIIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAVLLAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I+ P V++P + ++ +Q + ++ S ++ +L+++++D EL + Sbjct: 707 ITYPLVVRPSYVLGGRAMEIVYDEQDLRRYFAEAVSVSNESPVLLDRFLDDATELDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + + + P + I E++ +G G Sbjct: 767 CDGTDVVIGGIMEHIEQAGIHSG---DSGCSLPPYTLSKKIQDEIREQVRKLALELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KGDDIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|238797496|ref|ZP_04640994.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC 43969] gi|238718637|gb|EEQ10455.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC 43969] Length = 1077 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIDQAVEKATG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|238782678|ref|ZP_04626708.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC 43970] gi|238716338|gb|EEQ08320.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC 43970] Length = 1077 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|148976820|ref|ZP_01813492.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] gi|148976985|ref|ZP_01813631.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] gi|148977459|ref|ZP_01814048.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] gi|145963254|gb|EDK28520.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] gi|145963645|gb|EDK28906.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] gi|145963933|gb|EDK29192.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium SWAT-3] Length = 384 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 120/341 (35%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFKVSQI---DVDRSVG 43 +AV+ GG E++ S S A+AL ++ F+ ++ D+ ++ Sbjct: 20 IAVIHGGD-KEQDGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDI--NLA 76 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L DL G G D + + LE+L +PY + + + +K K + Sbjct: 77 QCLKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIK 136 Query: 102 SCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + G+P P I + + +++KP+ G +S+ + + + Sbjct: 137 AAGLPTAPFITIGIDEHFEDAAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFNRNDL 196 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-------------GVMGDASLDVTEIAVPKS 197 +++ G+ ++IE ++ G E V + Sbjct: 197 -AGVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQFEMPMAFSITERVLDA 255 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 D + + L A + ++ + ++ +G + + R D D + Sbjct: 256 DEPIFTSMDVKPITQDRLVAVNEEGLRNQLALIGQKIYRQLGLQTLVRVDLRMDKEGN-L 314 Query: 258 FWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293 + LE N +P + VS+ A G + +L+ +V Sbjct: 315 YVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355 >gi|90580537|ref|ZP_01236342.1| carbamoyl-phosphate synthase large subunit [Vibrio angustum S14] gi|90438195|gb|EAS63381.1| carbamoyl-phosphate synthase large subunit [Photobacterium angustum S14] Length = 1072 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLERHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAIEKSRD 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|325123192|gb|ADY82715.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter calcoaceticus PHEA-2] Length = 1076 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866 >gi|307824611|ref|ZP_07654835.1| carbamoyl-phosphate synthase, large subunit [Methylobacter tundripaludum SV96] gi|307734265|gb|EFO05118.1| carbamoyl-phosphate synthase, large subunit [Methylobacter tundripaludum SV96] Length = 1072 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D ++V ++A +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIDWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G D +LE + + A + D+ V + Sbjct: 89 TMGGQTALNCALDLDANGVLEKYGVEMIGATKEAINKAEDRELFNQAMRKIGYEVAKSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMEEALAAQQEVGYPTVIRPSFTMGGSGGGIAYNKEEFVEICERGLYLSPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNVS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQVAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 102/289 (35%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ I D D S L L + ++H G Sbjct: 587 ALREDGYETIMINCNPETVSTDFDTSDRLYFESLTLEDVLEIVHIEQPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P + +++ Sbjct: 647 LKLARALEAAGVPIIGTSPDSIDLAEDRERFQKLLERLNLKQPPNATARSVEQAINAAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + P V++P + ++ ++ + + ++ S ++ +L+++++D +E+ + Sbjct: 707 LGYPLVVRPSYVLGGRAMEIVFNEEGLQRYMKEAVSVSNDSPVLLDRFLDDAVEMDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P ++ ++ +++ +A+G G Sbjct: 767 YDGEQVLIGGLMEHIEQAG---VHSGDSACSLPPYELAPELQDKLREQVTKMAEALGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F ++ LE+N + T P ++ GY+ ++ Sbjct: 824 LMNTQFAIQGED--IYVLEVNPRASRTA----PFVSKATGYALAKIAAR 866 >gi|293609984|ref|ZP_06692286.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828436|gb|EFF86799.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 1076 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866 >gi|157870774|ref|XP_001683937.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127004|emb|CAJ05423.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 1118 Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +ID R+V ++ K D+ FN+ G E ++E LE S Sbjct: 603 KKIDSYRTVRKLVTSSKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 662 Query: 94 MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +++ VP + + P ++K L G +S+GI + ++ Sbjct: 663 KIDMKLMVGSSGVKVPNFVLLSNAESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 722 Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + L+E+++ G E T D F + Sbjct: 723 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 782 Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + Y + + G R DF D L+ + + Sbjct: 783 YFEKKWTMECGDQAYGFLASSDPAYTAITEMARNAFKYIMNGVGYGRVDFRIDELTGEPY 842 Query: 259 WLEINVQPGM 268 +LEIN GM Sbjct: 843 FLEINPNCGM 852 >gi|54307802|ref|YP_128822.1| carbamoyl phosphate synthase large subunit [Photobacterium profundum SS9] gi|46912225|emb|CAG19020.1| putative carbamoylphosphate synthase large subunit [Photobacterium profundum SS9] Length = 1077 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEKRGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ + Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMELAIEKSRI 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMREQVKKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|22095481|sp|O27077|CARB_METTH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1060 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L + G + ++ + + V ++ KPD Sbjct: 29 SGSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKIIQKEKPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + LE + + + + + D S + VP ++ Sbjct: 89 TMGGQTGLNVATGLAEMGALEGVRVIGSSIETIRNVEDRDLFDSFMKKLNEPVPAARAVS 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +++P G V + + + +Q+LI+Q V Sbjct: 149 SVEEALEAVEEIGYPVIVRPAFTLGGTGGGVAHSRDELIEIATRGLEMSFINQVLIDQSV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + ++ + + + + ++ A Sbjct: 209 LGWKEFEYEVMRDRNDTCIIVLCNMENIDPMGIHTGESVVVAPAQTLSDEDNQRLRDAAI 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+ G F P + + +E+N P ++ S + GY ++ + Sbjct: 269 KIIRALKIEGGCNIQFAVHPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKIAAKI 324 >gi|148652642|ref|YP_001279735.1| carbamoyl-phosphate synthase large subunit [Psychrobacter sp. PRwf-1] gi|148571726|gb|ABQ93785.1| carbamoyl-phosphate synthase large subunit [Psychrobacter sp. PRwf-1] Length = 1086 Score = 68.7 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQTVEQIIDKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A ++ D+ Q + G+ + Sbjct: 89 TMGGQTALNCALDLDRNGVLEKYNVELIGATKDAIEMAEDRELFDQAMKRIGLECPRAET 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + QLLI++ Sbjct: 149 AESMEEAFEIQAKLGFPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENVDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP+ Sbjct: 590 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPEGVIVQF 649 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + Sbjct: 650 GGQTPLKLARALEAAGVNIIGTSPDAIDRAEDRERFQHMIQQLNLIQPPNALATSMEDGL 709 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L + ++ +L+++++D IE+ Sbjct: 710 MKASSVGYPLVVRPSYVLGGRAMEIVYNEEELKHYLRTAVQASNEAPVLLDRFLDDAIEV 769 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S ++ + P + +I E++ + Sbjct: 770 DVDCVSDGNEVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSDEICDEMRAQTVAMAKE 826 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 827 LGVVGLMNVQFAV--KDGTVYILEVNPRAART----VPFVSKCIGKSLAQVAAR 874 >gi|257791419|ref|YP_003182025.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM 2243] gi|257475316|gb|ACV55636.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM 2243] Length = 1078 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V ++ + V V+A +PD Sbjct: 29 SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 L G G + V+ IL + + A D+ + + ++ G+ Sbjct: 89 TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAKLGIETSRSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P V++P G + + + Q + ++L+E+ Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I +F + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLTDVEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/266 (10%), Positives = 81/266 (30%), Gaps = 11/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ +PD L G + I T + Sbjct: 614 DKLYFEPLTF---EDVMDIVDVEQPDGVVVTLGGQTPLKLANALAAAGVPIMGTSPEAID 670 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ + P + I P +++P G+ ++ Sbjct: 671 LAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADRIGFPLLVRPSYVLGGRGMGIVYD 730 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + +++ + + ++++++G + + + + + + Sbjct: 731 GAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDALCDGEQVFVGG-VLEHIEMAGIH 788 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ P + + +++ +A +G G+ F + ++ +E N + Sbjct: 789 SGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGLINIQFAI--KDQVIYIIEANPRA 846 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P + G ++ + Sbjct: 847 SRT----VPFTSKATGVPLAKVAARI 868 >gi|2116977|dbj|BAA20124.1| D-alanine ligase [Clostridium perfringens] Length = 45 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 + LE+N PGMT S+FP+ AA SF ELL ++E Sbjct: 1 YVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 37 >gi|213861714|ref|ZP_03386184.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 75 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44 + ++ G S+E EVSL S K A++ + F V + +D+ Sbjct: 6 VGIVFSGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW 49 >gi|197334608|ref|YP_002155229.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri MJ11] gi|197316098|gb|ACH65545.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri MJ11] Length = 1076 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMDEAYQVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ +D Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLELLQPENATVTTMEQAIDKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I ++ +G RG Sbjct: 767 CDGEQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F KV+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|50122791|ref|YP_051958.1| carbamoyl phosphate synthase large subunit [Pectobacterium atrosepticum SCRI1043] gi|49613317|emb|CAG76768.1| carbamoyl-phosphate synthase large chain [Pectobacterium atrosepticum SCRI1043] Length = 1074 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADLGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQHAVNRLGLKQPSNATVATIEQAVEKARG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + +I +++ + RG Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|319936915|ref|ZP_08011326.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1] gi|319808014|gb|EFW04589.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1] Length = 1065 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G +V I+ D+ + ++ KPD Sbjct: 30 GTQACRALKEEGVEVVLINSNPATIMTDKDIADKVYIEPLTLPVVKNLIKKEKPDSILPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111 L G + + + L+ + + L+ D++ K ++ + P SI Sbjct: 90 LGGQNALNIAMALADEGFLKKHHVETIGTSTRTIKLAEDRLEFKTLMETINEPCAASIVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + ++ + + +Q LIE+ Sbjct: 150 NHVDDAIVFADKIGYPVVVRPAYTLGGTGGGIAANEKELHDICSNGLRLSRVNQCLIERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSAGNCITICNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F A+ +G + +P S + +E+N P ++ S + GY +L Sbjct: 269 FNIITALDIQGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 98/294 (33%), Gaps = 32/294 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ AG++ + D D V ++ KPD A G Sbjct: 578 CVWALKAAGYETIIVNNNPETVSTDFDIADRLYFEPLTPEDVESIIDIEKPDGAIVQFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + + +A ++ P ++ +++ Sbjct: 638 QTAIQLTKALMEMGVKILGTSAADVDAAEDRERFDEILEKCGIDRPKGSTVFTIEEAIET 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + D + + + +LI++Y+ G E+ Sbjct: 698 AQRLGYPVLVRPSYVLGGAGMEIALNDGDVKKFMGIINRQYQEHPILIDKYLAGKEVEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239 + D + + P + S +S V P + +I + + +A+ Sbjct: 758 AICDENGILI----PGIMEHVERAGVHSGDSISVYPTQKIKSEIKEIIVDYTKRLAEALH 813 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 814 VIGLINIQFIV--YEDQVYVIEVNPRSSRT----IPYISKVTDIPVVDIATHVI 861 >gi|189219943|ref|YP_001940583.1| carbamoylphosphate synthase large subunit [Methylacidiphilum infernorum V4] gi|189186801|gb|ACD83986.1| Carbamoylphosphate synthase large subunit [Methylacidiphilum infernorum V4] Length = 1098 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I D + S + ++ KPD Sbjct: 43 SGVQACKALKEDGYRVILINSNPATIMTDPEFSDKTYIEPITADILEKIIKEEKPDALLP 102 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V + IL+ L I + I A + D+ K+ + G+ + S Sbjct: 103 TLGGQTALNMGVELAQRGILDALGIEMLGAKIEAIKKAEDRQLFKEEMIKVGLDIPRSGI 162 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + P +I+P G + + +++ + ++LIE Sbjct: 163 ARNMEEAREVAAQINQFPLIIRPAFTLGGQGGSIAYNREEFEAGVIRGLGVSPIGEILIE 222 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + + + + + + Sbjct: 223 EGLLGWKEFEMEVMRDRKDSCVVICSIENMDPMGVHTGDSITVAPAQTLTDEEYQRMRDW 282 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + Q G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 283 AFTVIRQIGVETGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIA 338 Query: 290 LWM 292 + Sbjct: 339 AKL 341 Score = 43.3 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 63/173 (36%), Gaps = 8/173 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + ++ +L++ +++ + Sbjct: 717 AKKIGFPLLLRPSYVLGGRAMHIVYTESDLVRFVEEAIEAAPEKPILVDHFLE-DAIEVD 775 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + + + + +S ++ + P + +I +E++R FL + + Sbjct: 776 IDCVSDGEDIF-IGAILEHIELAGVHSGDSACVLPPFSLSENIKEEIRRTVFLLARELNV 834 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F ++ LE+N + T P ++ G +L ++ Sbjct: 835 VGLMNVQFAV--QKNNLYVLEVNPRASRT----VPFISKSIGVPLAKLAAQVI 881 >gi|325831454|ref|ZP_08164708.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1] gi|325486708|gb|EGC89156.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1] Length = 1078 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V ++ + V V+A +PD Sbjct: 29 SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 L G G + V+ IL + + A D+ + + ++ G+ Sbjct: 89 TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P V++P G + + + Q + ++L+E+ Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I +F + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLTDVEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 88/289 (30%), Gaps = 29/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AGF+ + D D V ++ +PD L G Sbjct: 588 ALHEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVEQPDGVVVTLGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A D+ + P + Sbjct: 648 LKLANALAAPGVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADR 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + +++ + + ++++++G + + Sbjct: 708 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDA 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + + +S ++ P + + +++ +A +G G+ Sbjct: 767 LCDGEQVFVGG-VLEHIEMAGIHSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGL 825 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F + ++ +E N + T P + G ++ + Sbjct: 826 INIQFAI--KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868 >gi|238918633|ref|YP_002932147.1| carbamoyl phosphate synthase large subunit [Edwardsiella ictaluri 93-146] gi|238868201|gb|ACR67912.1| carbamoyl-phosphate synthase, large subunit, putative [Edwardsiella ictaluri 93-146] Length = 1073 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R Q + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P S ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKSGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVERPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQKAVNRLGLKQPANATVTAIEQAVEKGAQ 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I E++R A + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNQVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|303247248|ref|ZP_07333522.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio fructosovorans JJ] gi|302491407|gb|EFL51295.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio fructosovorans JJ] Length = 1079 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + SV ++A KPD Sbjct: 29 SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYVEPIEPASVARIIAREKPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG----VPVCPS 110 L G + L E G + + R + +P Sbjct: 89 TLGGQTGLNTAVALAESGVLAEHGVELIGASLDVIKKAESRELFREAMENIGLTIPQSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I+ P +++P G V + + + + + ++++E+ Sbjct: 149 CHTMDDVREWGKKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISARGLAASMKSEIMLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + K Sbjct: 209 SVLGWKEFELELMRDRADNCVIICSIENIDPMGVHTGDSATVAPIQTLTDEEYQKMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 84/268 (31%), Gaps = 13/268 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVLNIIESEKPEGVIVQFGGQTPLNLAVPLLDAGVRILGTSPDSID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + + P + I P V++P + ++ Sbjct: 675 RAEDRERFQELLIKLGLRQPANGTAFTVDEAAAIADKIGYPVVVRPSYVLGGRAMEIVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + +LI+++ V+ E+ + D + + + Sbjct: 735 RGDLENYFKVAVVASGKHPILIDKFLVNATEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P + ++ E++R + +G G+ F ++ LE+N + Sbjct: 795 ---DSACVLPPHSLSPELVAEIERQTVALAKELGVIGLMNIQFAV--KDGDIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ G +L ++ Sbjct: 850 ASRTS----PFVSKATGVPLPKLATQVI 873 >gi|317046861|ref|YP_004114509.1| carbamoyl-phosphate synthase large subunit [Pantoea sp. At-9b] gi|316948478|gb|ADU67953.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. At-9b] Length = 1074 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + ++LLI++ Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ +P G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLNLKQPANATVSTLEQAVEKAVG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLNAEIQDVMRQQVEKLAFELNVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|238897353|ref|YP_002923030.1| carbamoyl phosphate synthase, large subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465108|gb|ACQ66882.1| carbamoyl phosphate synthase, large subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1074 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A PD Sbjct: 29 SGVQACKALREEGYRVILVNSNPATIMTDPDIADATYIEPIHWELVRKIIAKEHPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ + + G+ S Sbjct: 89 TMGGQTALNCALELEKKGVLSDYGVTMIGATGEAIDKAEDRRLFDKAMKKIGLNTPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + + + + +LLI++ Sbjct: 149 VHSMEEAFSVVSEIGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGFDLSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + + Sbjct: 209 SLIGWKEYEMEVIRDKNDNCIIVCSIENMDAMGIHTGDSITVAPAQTLTDKEYQRMRHAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP S ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSVLREIGVETGGSNVQFAVDPKSGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D+ V ++ +P G Sbjct: 588 ALHEAGYQTIMVNCNPETVSTDYDISDRLYFESVTLEDVLEIVRIEQPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + ++ + P + L Sbjct: 648 LRLARELEAAGVIILGTSPDAIDRVEDRERFQQAVHRLGLKQPENATAQTLEDAFLKADL 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + +I + + ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIIYNRVDLQRYFQNAVQVSNDSPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 DA D + + + E S +S LPA + I K ++ +G +G Sbjct: 765 DAICDGEHVFIGGIMEHIEEAGVHSGDSACSLPAYTLNEPIQKCMRDQVTKLAFELGVKG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F +++ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KKEQLYLIEVNPRAART----VPFVSKATGIPLAKI 864 >gi|148979738|ref|ZP_01815675.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium SWAT-3] gi|145961621|gb|EDK26920.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium SWAT-3] Length = 1076 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857 >gi|118474214|ref|YP_891521.1| carbamoyl phosphate synthase large subunit [Campylobacter fetus subsp. fetus 82-40] gi|118413440|gb|ABK81860.1| carbamoyl-phosphate synthase, large subunit [Campylobacter fetus subsp. fetus 82-40] Length = 1084 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D D S+ ++ D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPDFADATYIEPITKESISRIIKKENVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++L ++ + + + + +P Sbjct: 89 TMGGQVALNVAMELHEASMLGNVKFLGANPAAIKKGEDRVAFKEAMLKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M + I P +I+ G V + +++LIE+ + Sbjct: 149 NMEEAMVAAGDIGFPLIIRASYTLGGAGSGVAYNIDEFRDLAEAGIDASPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEFEMEVIRDKNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQHMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ +PD ++H L ++ + ++ D Sbjct: 616 FEPIDF-EHLRAVIEAEQPDGI--IVHFGGQTPLKFSKRLTMIGAKIIGTSARVIDVAED 672 Query: 93 KMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + +S GV P + + +I P +++P + + + + Sbjct: 673 RKKFSEFISKIGVKQPQNDTATSESEAVQKAAVIGYPVLVRPSYVLGGRAMRRVHSESEL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D EL + D + + Sbjct: 733 KEYMSEAVKVSNHSPVLLDKFLQDATELDVDAISDGKNVYIGAIMEHIEEAGIHSG---D 789 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +++ + P + +I +V+ +G G+ F +++ +E+N + T Sbjct: 790 SASILPPQNLSKEIINQVEICTKDIALNLGVVGLMNIQFAV--YQNELYIIEVNPRASRT 847 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ----VPFVSKATGIPMAKVATR 865 >gi|255068592|ref|ZP_05320447.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC 29256] gi|255047150|gb|EET42614.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC 29256] Length = 1071 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV +++ ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTMEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + V+ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + + P + +I E++R A+G G Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|194434563|ref|ZP_03066821.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae 1012] gi|194417216|gb|EDX33327.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae 1012] gi|320179591|gb|EFW54540.1| Carbamoyl-phosphate synthase large chain [Shigella boydii ATCC 9905] gi|332095318|gb|EGJ00341.1| carbamoyl-phosphate synthase large chain [Shigella boydii 5216-82] gi|332097825|gb|EGJ02798.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae 155-74] Length = 1073 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|157414575|ref|YP_001481831.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni 81116] gi|157385539|gb|ABV51854.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni 81116] Length = 1089 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D + + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIMVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|82775435|ref|YP_401782.1| carbamoyl phosphate synthase large subunit [Shigella dysenteriae Sd197] gi|309787312|ref|ZP_07681924.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae 1617] gi|81239583|gb|ABB60293.1| carbamoyl-phosphate synthase large subunit [Shigella dysenteriae Sd197] gi|308924890|gb|EFP70385.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae 1617] Length = 1073 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGVTADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|169349445|ref|ZP_02866383.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552] gi|169293520|gb|EDS75653.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552] Length = 1072 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 112/304 (36%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + DV + + ++ +PD Sbjct: 29 SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNLKRLTQIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + L+ + + A D++ K+ ++ G+ + S Sbjct: 89 NLGGQSALNLCSELNQAGILDKYNVEVLGVHVDAIERGEDRLEFKKAMNELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + +Q LIE+ Sbjct: 149 AETVEEALAIADKLGYPVVVRPAYTMGGAGGGLVYNVEELKTIVSRGLQASLVNQCLIEE 208 Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E V+ DA+ ++ + ++ S S +L I ++ ++ Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AF ++IG G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 267 QAFRIVESIGVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T + A D +P + ++ Sbjct: 641 LNLAAQLKENGVNILGTTPETIDMAEDRDLFNEMMEKLEIPMPESGMAVDVEEALNIAKR 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDDESLKQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D + VP + S +S +LP I + + ++ + + RG Sbjct: 758 DAISDGENVFVPAVMEHIELAGIHSGDSACILPSKHISIRHLETIKEYTKKIAKEMNVRG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + KV+ LE N + T P ++ + ++ ++ Sbjct: 818 LMNMQYAI--ADNKVYVLEANPRASRT----VPLVSKVCNINMVKIATDII 862 >gi|323142839|ref|ZP_08077551.1| carbamoyl-phosphate synthase, large subunit [Succinatimonas hippei YIT 12066] gi|322417381|gb|EFY08003.1| carbamoyl-phosphate synthase, large subunit [Succinatimonas hippei YIT 12066] Length = 1076 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V + D + R V ++A +PD Sbjct: 29 SGTQACRALRQEGYRVILVNSNPATIMTDPNIADATYIEPIHWRVVEKIIAKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + + ++ R + G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLAKYNVEMIGANADTIDKAENRERFDAAMKKIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + +LLI++ Sbjct: 149 AHSLEEAWEVQEKVGFPCIIRPSFTMGGTGGGIAYNPEEFEDICTKGLESSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDRKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGINPDNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D+ V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDISDRLYFEPVTFEDVLEIARVEKPVGVIVQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + + P + ++ Sbjct: 647 LKLARKLEAAGVPIIGTSPDAIDRAEDRQRFQEAVQRLKLLQPENGTATSLNQAVNIASK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P V++P + V+ ++ + ++ ++ +L+++++D E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEVVYDEEDLRRYFAEAVKVSNKAPVLLDKFLDHATEIDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S S + P + ++ E+ R++ + RG Sbjct: 767 CDGKKVIIGGIMEHVEECG---VHSGDASCVLPPWHLSQEVIDEISRISRELAMELDVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + K++ +E+N + T P ++ G ++ + Sbjct: 824 LMNVQLAVRE--DKIYLIEVNPRAART----VPFVSKATGLPLAKIAARI 867 >gi|294788331|ref|ZP_06753574.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri ATCC 29453] gi|294483762|gb|EFG31446.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri ATCC 29453] Length = 1074 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLRKYNVELIGASEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 40/296 (13%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL ++GF+ + D D V ++ P ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRKENPWGV--IVHYGGQ 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121 + L + + + + D+ R ++V++ G+ P+ Sbjct: 640 TPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRTARAEDEALRLA 699 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCG 180 I P V++P + V+ + + + ++ + +L++ + + IE+ Sbjct: 700 EEIGYPLVVRPSYVLGGRAMQVVHSPEQLQTYMREAVQVSEDSPVLLDFFLNNAIEVDVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + + + P + ++ E++R A+ Sbjct: 760 CVSDGEEVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSIETQDEIRRQTKAMAFALNV 816 Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287 +G+ F VF LE+N P ++ + P A AG S +E Sbjct: 817 KGLMNVQFAV--QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLKE 870 >gi|264679350|ref|YP_003279257.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni CNB-2] gi|299532309|ref|ZP_07045702.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni S44] gi|262209863|gb|ACY33961.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni CNB-2] gi|298719717|gb|EFI60681.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni S44] Length = 1083 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWKNGVLDKYKVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKQMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A A+ + G++ + D D Sbjct: 563 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 615 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ +P+ G + E ++I T ++ +A Sbjct: 616 RLYFEPLTLEDVLEIVDVEQPEGVIVQYGGQTPLKLALGLEREGVKIIGTTPDMIDAAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + ++ + P V++P + ++ + + + Sbjct: 676 RERFQKLLNELGLRQPPNATARTEAEALEKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ ++ +L++ ++ + C V + +S + Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLSN-AIECDVDCVRDKTGAVYIGGVMEHIEQAGVHSGDS 794 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268 + + P + + E++R + + G+ F + ++ LE+N + Sbjct: 795 ACSLPPYYLKAETVAEIKRQTAAMAEGLHVVGLMNVQFAIKEADGQDVIYVLEVNPRASR 854 Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 855 T----VPFVSKATGVQLAKVAAR 873 >gi|221066103|ref|ZP_03542208.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni KF-1] gi|220711126|gb|EED66494.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni KF-1] Length = 1083 Score = 68.7 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWKNGVLDKYKVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKQMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A A+ + G++ + D D Sbjct: 563 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 615 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ +P+ G + E ++I T ++ +A Sbjct: 616 RLYFEPLTLEDVLEIVDVEQPEGVIVQYGGQTPLKLALGLEREGVKIIGTTPDMIDAAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + ++ + P V++P + ++ + + + Sbjct: 676 RERFQKLLNELGLRQPPNATARTEAEALEKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ ++ +L++ ++ + C V + +S + Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLSN-AIECDVDCVRDKTGAVYIGGVMEHIEQAGVHSGDS 794 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268 + + P + + E++R + + G+ F + ++ LE+N + Sbjct: 795 ACSLPPYYLKAETVAEIKRQTAAMAEGLHVVGLMNVQFAIKEADGQDVIYVLEVNPRASR 854 Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 855 T----VPFVSKATGVQLAKVAAR 873 >gi|311032895|ref|ZP_07710985.1| arginine specific carbamoyl-phosphate synthase large chain [Bacillus sp. m3-13] Length = 1074 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 50/307 (16%), Positives = 105/307 (34%), Gaps = 38/307 (12%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V + DVD S+ ++ KPD Sbjct: 30 GTQACLALKEEGIEVVLVNNNPATIMTDVDIADHVYMEPLTVESLEKIIEKEKPDGIIGT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +V+ IL+ + + + + D+ R+ + + +P + Sbjct: 90 LGGQTALNLIVELSGKDILKKHNVSVLGTSVHSIQQGEDRELFRTLMMELNEPIPESQIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + MD I P +++P G DQ + + L + + +Q+L+E+ Sbjct: 150 HSIKEGMDFVKKIGYPIIVRPAYTLGGEGGGFAYNDQELHMLLKKGLHLSPINQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + + ++ + + Y+ ++ + Sbjct: 210 IKGW-KEVEYEVMRDENDTCIIVCNMENFDPVGVHTGDSIVVAPSQTLSDRQYQILRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G F DP S + +E+N P ++ S + GY + Sbjct: 269 LKIIRNLKIVGGCNIQFAMDPNSDNYYIIEVN--PRVSRSS--ALASKATGYP----IAR 320 Query: 292 MVEDASC 298 + A C Sbjct: 321 I--AAKC 325 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 81/292 (27%), Gaps = 31/292 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S A AL+ AGF+ ++ + + ++ K DL F Sbjct: 577 SVHAV-KALKKAGFETIVVNNNPETVSTDFSVADKLYFEPITIEDIVPIIQKEKVDLIFI 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + E I T + + + + Sbjct: 636 QFGGQTAINLAEGLKEEGAIIAGTSIESIDKLEDRSHFYALLESEGIPHIEGKIVEQSSQ 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + P +++P + I D I L LL+++YV G+E Sbjct: 696 LKAEAQALGYPVLVRPSYVIGGQSMYTIYDDGEINSFLDIHQHNESLWPLLVDRYVPGLE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 V+ D + S + + + E + Q Sbjct: 756 CELDVISDGEQIYIPAIFEHIEKAGVHSGDSLAVLPSISLSTQMKERLVEYTKKICNTAQ 815 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 I GI+ F+ + + ++ LE+N + T P ++ EL Sbjct: 816 II---GIANIQFVINRDN--IYVLEVNPRASRT----VPIVSKVTDVPMIEL 858 >gi|302799302|ref|XP_002981410.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii] gi|300150950|gb|EFJ17598.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii] Length = 1194 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I D D V V+A +PD Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L+ + + + A + D+ +Q + GV PS + Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + + + Q+L+E Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKAGLTASITSQVLVE 302 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + + Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 362 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P +V +E+N P ++ S + G+ ++ Sbjct: 363 AIAIIREIGVECGGSNVQFAINPEDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 418 Query: 290 LWM 292 + Sbjct: 419 AKL 421 Score = 37.2 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IEL 177 + P V++P + ++ + + L + + G +L+++Y+ I++ Sbjct: 811 AKRVGFPVVVRPSYVLGGRAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDV 870 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 C G+ + + I + + T +PA I + Sbjct: 871 DCLADGNGGVVIGGIMEHIEQAGVHSGDSACSIPTQTIPAVALATIRD----ATTKLAKK 926 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + G+ F S +V+ +E N + T P ++ G+ + L+ Sbjct: 927 LNVCGLMNCQFAIT-QSGEVYIIEANPRASRT----VPFVSKAIGHPLAKYAALV 976 >gi|269137952|ref|YP_003294652.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda EIB202] gi|267983612|gb|ACY83441.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda EIB202] gi|304558000|gb|ADM40664.1| Carbamoyl-phosphate synthase large chain [Edwardsiella tarda FL6-60] Length = 1073 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + Q +L + + A + D+ R Q + G+ S + Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSLEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVERPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQ 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I E++R A + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNQVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|317490562|ref|ZP_07949038.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA] gi|316910342|gb|EFV31975.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA] Length = 1078 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V ++ + V V+A +PD Sbjct: 29 SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 L G G + V+ IL + + A D+ + + ++ G+ Sbjct: 89 TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P V++P G + + + Q + ++L+E+ Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I +F + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 87/289 (30%), Gaps = 29/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AGF+ + D D V ++ +PD G Sbjct: 588 ALHEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVEQPDGVVVTFGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A D+ + P + Sbjct: 648 LKLANALAAAGVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADR 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + +++ + + ++++++G + + Sbjct: 708 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDA 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + + +S ++ P + + +++ +A +G G+ Sbjct: 767 LCDGEQVFVGG-VLEHIEMAGIHSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGL 825 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F + ++ +E N + T P + G ++ + Sbjct: 826 INIQFAI--KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868 >gi|331082143|ref|ZP_08331271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA] gi|330405738|gb|EGG85268.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA] Length = 1072 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVERLTEIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G E+ +L+ + + A + D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ ++ + + + + +Q+L+E+ Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E V +I++ + ++ + I D+ +++ Sbjct: 209 SVIGWE-ELEVEVVRDKTGKKISICFIENIDPMGVHTGDSFCSAPMLTISQDLQDRLEKQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A ++IG G + F DP S ++ +EIN + T S + G+ Sbjct: 268 AHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINPR---TSRSS-ALASKATGFPIA 319 Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 33/295 (11%) Query: 22 CASA--LEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVL 58 +A L + GF+ + D D S L KP Sbjct: 576 VHAAFTLRELGFETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVMSIYNKEKPLGIIVQF 635 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ A D + +P + + Sbjct: 636 GGQTPLNIAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEAL 695 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + H I P +++P G+ V+ D + + + +L+++++ + Sbjct: 696 EIAHRIGYPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFL---QNA 752 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQA 237 DA D T VP + + S +S V+P+ + KE +++ Sbjct: 753 LECETDAISDGTHAFVPTVMQHIEQAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACE 812 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +G G+ + KV+ LE N + T P ++ + + + Sbjct: 813 MGVVGLMNMQYAICE--DKVYVLEANPRASRT----VPLVSKVCNINMANIATKL 861 >gi|134300074|ref|YP_001113570.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum reducens MI-1] gi|134052774|gb|ABO50745.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum reducens MI-1] Length = 1079 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ ++ + +S+ ++ +PD Sbjct: 29 SGTQACKALRNLGYQIVLVNSNPATIMTDPGIADATYVEPLNVKSLTEIIVKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + L + I A D++ K+ +S G+ + S Sbjct: 89 NLGGQTALNLCSELNQSGILNQYGVKVIGVQIDAIERGEDRIAFKETMSRLGIEMPRSQA 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G ++ + + + + + Q+L+E+ Sbjct: 149 AYSVEEAEKIAQELGYPVVIRPAYTMGGTGGGLVYNVEELRTIANRGIASSMVGQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + + + ++ + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDA-VGVHTGDSFCAAPMLTISQELQQRLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +AI G + F DP + +V +EIN + T S + G+ Sbjct: 268 SYAVVEAIEVIGGTNVQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 319 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 85/290 (29%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ + D D V + KP G Sbjct: 580 ALKELGYETVMVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIYQKEKPLGVIVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A D+ S +P + +D Sbjct: 640 LNIARELEQAGVKILGTSQETIDLAEDRDRFNSMMQKLGIPMPESGMAVNIEEAIDISKK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + + + +L+++++ G + Sbjct: 700 IGYPLMVRPSYVLGGRGMEIVHDEDMLRRYMAAAVGVTPERPILVDRFL-GHAIEAEADA 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + Y +S ++ + P I + + + + G+ Sbjct: 759 ISDGKDAFVPTVMEH-IEYAGVHSGDSACVIPPVSISEEHLNTIVDYTKKIAKEMQVVGL 817 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +V+ LE N + T P ++ + ++ Sbjct: 818 MNMQYAI--ADDRVYVLEANPRASRT----VPLVSKVCNIPMARIATEII 861 >gi|254491827|ref|ZP_05105006.1| carbamoyl-phosphate synthase, large subunit [Methylophaga thiooxidans DMS010] gi|224463305|gb|EEF79575.1| carbamoyl-phosphate synthase, large subunit [Methylophaga thiooxydans DMS010] Length = 1072 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D + ++V V+ +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPNMADATYIEPVNWQAVSKVIEAERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D ILE + + A + D+ + + G+ + S Sbjct: 89 TMGGQTALNCALDLEKHGILEKFGVEMIGADSEAINKAEDRDLFRAAMRKIGLDMPKSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ Q P +I+P G + Q + + +LLIE+ Sbjct: 149 AHTLDEALEVQGQFGFPVIIRPSFTMGGSGGGIAYNKQDFIEICQRGLYLSPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SIIGWKEYEMEVVRDRKDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P S ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPESGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDLEKPKGVIVQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDHAEDRERFQQMVDKLNLLQPPNRLAHSADTAVALASE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + + ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNEDELQRYMQNAVKVSNDSPVLLDRFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + I +++ +G +G Sbjct: 767 CDGKEVLIGGIMEHIEQAG---VHSGDSACAIPPYSLSNAIQDKLREQVRQMALELGVKG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +++ LE+N + T P ++ G ++ Sbjct: 824 LMNTQFAI--KGDEIYILEVNPRASRT----VPYISKSIGVPLAKVAAR 866 >gi|90416146|ref|ZP_01224078.1| carbamoyl-phosphate synthase, large subunit [marine gamma proteobacterium HTCC2207] gi|90331871|gb|EAS47085.1| carbamoyl-phosphate synthase, large subunit [marine gamma proteobacterium HTCC2207] Length = 1072 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + R+V ++A KPD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPVEWRTVEHIIAQEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYGVEMIGANADAIDKAEDRERFDKAMKAIGLDTPNSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAIQVSDRFGFPCVIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDRKDNCIIICAIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 IKVLREIGVETGGSNVQFAVNPEDGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVRIEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEAAGVPIVGTTPDAIDRAEDRERFQQMIQKLGLLQPQNATARSADQAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I P V++P + ++ K+ + + + + +L++ ++ IE+ Sbjct: 702 ELAKEIGYPLVVRPSYVLGGRAMEIVYKEDELRHYMKTAVQVSDDSPVLLDFFLPNAIEM 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + DI E++ + Sbjct: 762 DVDAVSDGEQVVIGAIMQHIEQAGIHSG---DSACSLPPYSLGEDIQNEMREVCKKMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G RG+ ++ +E+N + T P ++ G S ++ Sbjct: 819 LGVRGLMNVQLAL--QDGLIYVIEVNPRASRT----VPFVSKCIGTSLAKIAAR 866 >gi|205356067|ref|ZP_03222835.1| carbamoyl phosphate synthase large chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205346191|gb|EDZ32826.1| carbamoyl phosphate synthase large chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 1095 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 35 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 94 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 95 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 154 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 214 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + ++ I + + + + Sbjct: 215 LGWKEYEMEVIRDRVNNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 274 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 275 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 87/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 625 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 681 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ +++ + I P +++P + V+ + + Sbjct: 682 RKKFAEFITKLGINQPKNSTVISVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 742 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 798 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 799 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 856 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 857 ----VPFVSKATGIPLAKVATR 874 >gi|149190314|ref|ZP_01868587.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1] gi|148835803|gb|EDL52767.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1] Length = 1074 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 44.5 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DALCDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDTMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + KV+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNKVYLIEVNPRAART----VPFVSKATG 857 >gi|258404458|ref|YP_003197200.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium retbaense DSM 5692] gi|257796685|gb|ACV67622.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium retbaense DSM 5692] Length = 1078 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 101/302 (33%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + SV ++A +PD Sbjct: 29 SGTQALKALKEEGYEVVLINSNPATIMTDPGLADRTYVEPLEPESVAKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + V +LE + + + + + + + + + G+ V S + Sbjct: 89 TLGGQTGLNTAVSVAESGVLEKYGVELIGASLEVIQKAESRRQFRTAMENIGLTVPQSGI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + +S P +++P G V + + Q + + ++++E+ Sbjct: 149 ASSLEEVREWTNTLSFPMIVRPAFTLGGTGGGVAYNREDLEEIARQGLAASPSHEVMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + K Sbjct: 209 SVLGWKEYELEVMRDKHDNCVIICSIENLDAMGVHTGDSVTVAPAQTLTDREFQKMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVETGGSNVQFAVNPENGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 10/250 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ +P+ G + V + + I T + A ++ + Sbjct: 628 EDVLNIIEQEQPEGVIVQFGGQTPLNLAVPLLRAGVPILGTTPDSIDRAEDRERFHALLN 687 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P +D I P V++P + ++ + + Sbjct: 688 KLGLKQPDNGLATSEEGALDVAERIGYPVVVRPSYVLGGRAMEIVYDSDELKNYFRDAVV 747 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +LI++++ G +E+ + D + + + +S ++ + P Sbjct: 748 ASPDHPILIDKFLQGAVEIDVDALCDGTQTYVGGVMEHIEEAG---VHSGDSACVLPPHT 804 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + E++R + + +G G+ F + ++F LE+N + T P ++ Sbjct: 805 VSQETIDEIRRQSSALAEELGVVGLMNVQFAV--QNGEIFILEVNPRASRT----VPFVS 858 Query: 279 AYAGYSFREL 288 G +L Sbjct: 859 KATGVPLAKL 868 >gi|326317399|ref|YP_004235071.1| carbamoyl-phosphate synthase large subunit [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374235|gb|ADX46504.1| carbamoyl-phosphate synthase, large subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1086 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQRSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 92/299 (30%), Gaps = 34/299 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPTGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + E + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALGLEAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 704 EKAATLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + + +S ++ + P + E++R + + Sbjct: 763 CDVDCLRDPEGKVFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTAAMAEGL 822 Query: 239 GCRGISRSDFLFDPLSRK------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 823 SVVGLMNVQFAIQEREENGAKQDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 877 >gi|262278056|ref|ZP_06055841.1| carbamoyl-phosphate synthase large subunit [Acinetobacter calcoaceticus RUH2202] gi|262258407|gb|EEY77140.1| carbamoyl-phosphate synthase large subunit [Acinetobacter calcoaceticus RUH2202] Length = 1076 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +L + + A + D+ + G+ + + Sbjct: 89 TMGGQTALNCALALDEHGVLAKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALTIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDVYILEVNPRASRT----VPFVSKCIGDSLAKVAAR 866 >gi|325686169|gb|EGD28219.1| carbamoyl-phosphate synthase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1066 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 45/337 (13%), Positives = 108/337 (32%), Gaps = 59/337 (17%) Query: 4 LMGGISSEREV-------------S--LSSGKAC---------ASALEDAGFKVSQI--- 36 + GG E E+ S + G+ AL++AG++ + Sbjct: 539 IYGG---EHEIQPDRSKKKVIVFGSGPIRIGQGIEFDYCCVHSVWALKEAGYETIIVNNN 595 Query: 37 ------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D D V ++ +PD A G + + I Sbjct: 596 PETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTAIKLSQDLMKMGVPIL 655 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 T + + +A ++ P ++ + + + + P +++P Sbjct: 656 GTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVLVRPSYVLGG 715 Query: 139 LGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 G+ + D + + +LI++Y+ G E + D + + Sbjct: 716 AGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEGILIPGIMEH 775 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + +S + + P KI ++ + + + +A+ +G+ F+ K Sbjct: 776 VERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQFIV--YENK 830 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ +E+N + T P ++ G ++ ++ Sbjct: 831 VYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNV 57 G AL + G +V I D D + + + KPD Sbjct: 30 GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLMEKEKPDALLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 + G + + + LE + + ++ D++ K ++ V + Sbjct: 90 MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + +Q + + + LIEQ Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLRLSRVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +G F +P S +E+N P ++ S + GY +L Sbjct: 269 LNIITALNIKGGCNVQFALNPDSFDYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|261823075|ref|YP_003261181.1| carbamoyl phosphate synthase large subunit [Pectobacterium wasabiae WPP163] gi|261607088|gb|ACX89574.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium wasabiae WPP163] Length = 1074 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + +I +++ + RG Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|227114250|ref|ZP_03827906.1| carbamoyl phosphate synthase large subunit [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 514 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 >gi|222110656|ref|YP_002552920.1| carbamoyl-phosphate synthase large subunit [Acidovorax ebreus TPSY] gi|221730100|gb|ACM32920.1| carbamoyl-phosphate synthase, large subunit [Acidovorax ebreus TPSY] Length = 1083 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 90/295 (30%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP+ Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALGLEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L+++++ + Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + + E++R + Sbjct: 763 CDVDCVRDASGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 822 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 823 NVVGLMNVQFAIQETDDGDVIYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 873 >gi|149182327|ref|ZP_01860805.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1] gi|148849946|gb|EDL64118.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1] Length = 906 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACIALKEEGYKVILVNSNPATIMTDSEIADKVYIEPITLEFVSRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +EI T + A D R + VP I Sbjct: 90 LGGQTGLNMAVELANAGVLDECNVEILGTKLSAIEQAEDRDLFRKLMNELNEPVPKSEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + + + + ++ Q L+E+ Sbjct: 150 RSVDEAFQFVEEVGYPVIVRPAYTLGGTGGGICHNREELIEIVSSGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSNDSAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQMLRNCS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + + I T L A + DK P + + ++ Sbjct: 640 INLAAQLVERGVRILGTSLEDLDRAENRDKFEYTLQSLGIPQPEGKTAVTVEGAVEIADS 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEQSELLQYMKNAVKVNPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P ++ D + + + + G+ Sbjct: 760 DGKGVVIPGIMEHIERAG---VHSGDSIAVYPPQQLTRDQKERIIEYTTKLARGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQYVI--SKNEVYVLEVNPRSSRT----VPFLSKITGVPMANLATKVI 860 >gi|295098559|emb|CBK87649.1| carbamoyl-phosphate synthase large subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAVCDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867 >gi|296101206|ref|YP_003611352.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055665|gb|ADF60403.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867 >gi|182420016|ref|ZP_02951250.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum 5521] gi|237669515|ref|ZP_04529495.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376053|gb|EDT73640.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum 5521] gi|237654959|gb|EEP52519.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1070 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 32/289 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ +PD G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIEKERPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEQKVVTLGTTADQIDMAEDREKFDELLEKLGITRPKGKGIWSLEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + + +LI++Y+ G E+ Sbjct: 700 ARRLGFPVLVRPSYVIGGQGMEITHDEEELTFYLENAFAKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P I D+ + IG Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNITDDMKGRILDYTKKLALEIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ F+ ++ +E+N + T P ++ +G +L Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRT----VPYISKVSGVPIVDL 858 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V ++ + + V+A KPD Sbjct: 29 SGTQACEALKSEGIEVVLVNSNPATIMTDKEVADKIYLEPLTLEFLEKVIAKEKPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G G + V+ L+ + + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELYDAGILDKYNVRVIGTSIESIKEGEDRELFRNMMNRIGEPVIKSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P + + +EIN P ++ S + GY +L Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|299769005|ref|YP_003731031.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1] gi|298699093|gb|ADI89658.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1] Length = 1076 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +LE + + A + D+ + G+ + + Sbjct: 89 TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALAIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ ++ + L ++ ++ +L+++++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDVYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866 >gi|283850385|ref|ZP_06367674.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp. FW1012B] gi|283574411|gb|EFC22382.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp. FW1012B] Length = 1078 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + +V ++A KPD Sbjct: 29 SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIAREKPDAILP 88 Query: 57 VLHGNFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V +E+ ++ A S D R VP Sbjct: 89 TLGGQTGLNTAVALAESGVLAAHGVELIGASLDVIKKAESRDLFRKAMENIGLKVPKSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I+ P +++P G V + + + + ++++EQ Sbjct: 149 CHTMDDVREWGRKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISSVGLAASMKSEIMLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + K Sbjct: 209 SVLGWKEFELEVMRDRADNCVIICSIENIDPMGVHTGDSATVAPIQTLTDDEYQKMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 88/268 (32%), Gaps = 13/268 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V +L KP+ G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVLNILESEKPEGVIVQFGGQTPLNLAVPLLKAGVRILGTSPDSID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + + I P V++P + ++ Sbjct: 675 RAEDRERFQAMLHKLGLRQPANGTAFAVEEACEIADKIGYPVVVRPSYVLGGRAMEIVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + +L++++ V+ IE+ + D + + + Sbjct: 735 RKDLENYFKYAVVASGKHPILVDKFLVNAIEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P + ++ +E++R + +G G+ F ++ LE+N + Sbjct: 795 ---DSACVLPPHSLSPELIREIERQTVALAEELGVIGLMNIQFAV--KDGDIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ G +L ++ Sbjct: 850 ASRTS----PFVSKATGVPLAKLATNVI 873 >gi|300310711|ref|YP_003774803.1| carbamoyl-phosphate synthase large subunit [Herbaspirillum seropedicae SmR1] gi|300073496|gb|ADJ62895.1| carbamoyl-phosphate synthase (large chain) protein [Herbaspirillum seropedicae SmR1] Length = 1077 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GFKV ++ + +V ++A KPD Sbjct: 29 SGAQACKALREEGFKVILVNSNPATIMTDPEMADATYIEPITWQAVERIIAKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +LE ++ + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLHRHGVLEKYKVELIGATPEAIDKAEDRSKFKEAMTKIGLGSARSGV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 SHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYNAEEFETICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 96/300 (32%), Gaps = 37/300 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V ++ KP Sbjct: 578 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 637 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 638 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADAL 697 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ +H +L++++ D IE+ Sbjct: 698 QLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 757 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + D +E++R L + Sbjct: 758 DVDCLSDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKDTIEELKRQTALMAKG 814 Query: 238 IGCRGISRSDFLF--DPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F + K VF LE+N + T P ++ G ++ Sbjct: 815 LNVVGLMNVQFAIQQSEVDGKTVDTVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 870 >gi|241763932|ref|ZP_04761974.1| carbamoyl-phosphate synthase, large subunit [Acidovorax delafieldii 2AN] gi|241366755|gb|EER61196.1| carbamoyl-phosphate synthase, large subunit [Acidovorax delafieldii 2AN] Length = 1081 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWHNGVLDKYKVELIGATPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIVICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 92/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + E + I T ++ +A ++ ++ P + + Sbjct: 644 GGQTPLKLALGLEAEGVPIIGTTPDMIDAAEDRERFQALLHQLQLRQPPNATARTEPEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L+++++ + Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + E++R + + Sbjct: 763 CDVDCVRDSTGVTFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDEIKRQTAAMAEGL 822 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F K ++ LE+N + T P ++ G ++ Sbjct: 823 NVVGLMNVQFAIQEADGKDIIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 873 >gi|153951356|ref|YP_001398673.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. doylei 269.97] gi|152938802|gb|ABS43543.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGAQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQAMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L E + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFEAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSIEEAVFKASDIEYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|322834465|ref|YP_004214492.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602] gi|321169666|gb|ADW75365.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LP +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPCYTLSKEIQDVMRQQVEKLAFELSVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G + ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVALAKVAAR 867 >gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 814 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 75/250 (30%), Gaps = 15/250 (6%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +ID R+V ++ K D+ FN+ G E ++E LE S Sbjct: 301 KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 360 Query: 94 MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +++ VP + + P ++K L G +S+GI + ++ Sbjct: 361 KIDMKLMVGSSGVKVPNFVLLNDEEGLAKKCRHLKFPVIVKHLSGYASVGIHKENRCDTL 420 Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + L+E+++ G E T D F + Sbjct: 421 DQLRTRVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQSSDDFA 480 Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + Y + + G R DF D L+ + Sbjct: 481 YFEKKWTMECGDQAYGFLASSDPAYPAITEMARNAFKYIMNGVGYGRVDFRIDELTGAPY 540 Query: 259 WLEINVQPGM 268 +LEIN GM Sbjct: 541 FLEINPNCGM 550 >gi|332993760|gb|AEF03815.1| carbamoyl phosphate synthase large subunit [Alteromonas sp. SN2] Length = 1071 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L E G A A+ + R + + + + Sbjct: 89 TMGGQTALNCALDLDHHGVLKEFNVELIGATADAIDKAENRERFDKAMKNIGLECPRAEI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +MD H I P +I+P G + + + +LLI++ Sbjct: 149 AQSMDQAHDVLTRIGFPCIIRPSFTMGGSGGGIAYNIDEFNEICGRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQLMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVDPNTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P ++ + Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPEAIDRAEDRERFQQMVNKLGLKQPANATVTNIEQAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ + + L ++ ++ +L+++++D IE+ Sbjct: 702 AMADGIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLTEAVKVSNDSPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + +I ++ Sbjct: 762 DIDAICDGKEVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSKEIQDVMREQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +V+ +E+N + T P ++ G ++ Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|317473238|ref|ZP_07932535.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA] gi|316899333|gb|EFV21350.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA] Length = 1066 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 32/297 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL DAG++ + D D V ++ KPD A G Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ + + H Sbjct: 642 IKLTQALMEMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAHE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +LI++Y+ G E+ + Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P+ + + + + +++ G Sbjct: 762 DGEEIII----PGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVIG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + F+ +V+ +E+N + T P ++ G +L ++ A Sbjct: 818 LINIQFIVC--DEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGAKIR 868 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKIVEKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + ++ + T S + A + + + + Sbjct: 90 LGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTMEKIGEPIAAGKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V +P G + + + + L + ++L+E+Y Sbjct: 150 TDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLRLSRVGEVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IGGW-KEVEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELKVNGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|302773047|ref|XP_002969941.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii] gi|300162452|gb|EFJ29065.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii] Length = 1194 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I D D V V+A +PD Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L+ + + + A + D+ +Q + GV PS + Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + + + Q+L+E Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKSGLTASITSQVLVE 302 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + + Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 362 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P +V +E+N P ++ S + G+ ++ Sbjct: 363 AIAIIREIGVECGGSNVQFAINPEDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 418 Query: 290 LWM 292 + Sbjct: 419 AKL 421 Score = 37.2 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IEL 177 + P V++P + ++ + + L + + G +L+++Y+ I++ Sbjct: 811 AKRVGFPVVVRPSYVLGGRAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDV 870 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 C G+ + + I + + T +PA I + Sbjct: 871 DCLADGNGGVVIGGIMEHIEQAGVHSGDSACSIPTQTIPAVALATIRD----ATTKLAKK 926 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + G+ F S +V+ +E N + T P ++ G+ + L+ Sbjct: 927 LNVCGLMNCQFAIT-QSGEVYIIEANPRASRT----VPFVSKAIGHPLAKYAALV 976 >gi|167745331|ref|ZP_02417458.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662] gi|167655052|gb|EDR99181.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662] Length = 1066 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 32/297 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL DAG++ + D D V ++ KPD A G Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ + + H Sbjct: 642 IKLTQALMEMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAHE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +LI++Y+ G E+ + Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P+ + + + + +++ G Sbjct: 762 DGEEIII----PGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVIG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + F+ +V+ +E+N + T P ++ G +L ++ A Sbjct: 818 LINIQFIVC--DEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGAKIR 868 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKIVEKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + ++ + T S + A + + + + Sbjct: 90 LGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTMEKIGEPIAAGKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V +P G + + + + L + ++L+E+Y Sbjct: 150 TDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLRLSRVGEVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IGGW-KEVEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELKVNGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|332530816|ref|ZP_08406742.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis ATCC 19624] gi|332039728|gb|EGI76128.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis ATCC 19624] Length = 1088 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A KPD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L ++ + A + D+++ K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLWRHGVLHKYKVELIGATPEAIDKAEDRLKFKEAMTRIGLGSARSGI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G + + + + +LLIE+ Sbjct: 149 AHSLDEAWAVQKTVGFPVVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLVGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 91/299 (30%), Gaps = 34/299 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALGLEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLLQPPNATARTEPEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 704 EKAQALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + E++R A+ Sbjct: 763 CDVDCVRDKSGRTYIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTSAMANAL 822 Query: 239 GCRGISRSDFLFD--PLSRKV----FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F + + + LE+N + T P ++ G ++ Sbjct: 823 QVVGLMNVQFAIQQIEKNGTIQDVIYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 877 >gi|300939445|ref|ZP_07154107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 21-1] gi|300455666|gb|EFK19159.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS 21-1] Length = 1073 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|269103419|ref|ZP_06156116.1| carbamoyl-phosphate synthase large chain [Photobacterium damselae subsp. damselae CIP 102761] gi|268163317|gb|EEZ41813.1| carbamoyl-phosphate synthase large chain [Photobacterium damselae subsp. damselae CIP 102761] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPNMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + S G+ + Sbjct: 89 TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRSRFDAAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLLQPENATVTTIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + ++ S ++ +L+++++D E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I ++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMRDQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F + +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|313123764|ref|YP_004034023.1| carbamoyl-phosphate synthase large subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280327|gb|ADQ61046.1| Carbamoyl-phosphate synthase large subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1066 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 45/337 (13%), Positives = 108/337 (32%), Gaps = 59/337 (17%) Query: 4 LMGGISSEREV-------------S--LSSGKAC---------ASALEDAGFKVSQI--- 36 + GG E E+ S + G+ AL++AG++ + Sbjct: 539 VYGG---EHEIQPDRSKKKVIVFGSGPIRIGQGIEFDYCCVHSIWALKEAGYETIIVNNN 595 Query: 37 ------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78 D D V ++ +PD A G + + I Sbjct: 596 PETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTAIKLSQDLMKMGVPIL 655 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 T + + +A ++ P ++ + + + + P +++P Sbjct: 656 GTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVLVRPSYVLGG 715 Query: 139 LGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 G+ + D + + +LI++Y+ G E + D + + Sbjct: 716 AGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEGILIPGIMEH 775 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + +S + + P KI ++ + + + +A+ +G+ F+ K Sbjct: 776 VERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQFIV--YENK 830 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 V+ +E+N + T P ++ G ++ ++ Sbjct: 831 VYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL + G +V I+ + + V ++ KPD Sbjct: 30 GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLIEKEKPDALLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 + G + + + LE + + ++ D++ K ++ V + Sbjct: 90 MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + Q + + + LIEQ Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNKQELHEICSNGLRLSRVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +G +P S + +E+N P ++ S + GY +L Sbjct: 269 LNIITALNIKGGCNVQLALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|293392912|ref|ZP_06637229.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM 4582] gi|291424446|gb|EFE97658.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM 4582] Length = 1073 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIDQAVEKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|253690008|ref|YP_003019198.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756586|gb|ACT14662.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L+++++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + +I +++ + RG Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|225435213|ref|XP_002282042.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1349 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I D D V VL +PD Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPELVEQVLEKERPDAILP 169 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V +LE + + + A + D+ KQ + + GV PS + Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229 Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + + + Q+L+E Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 349 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 350 SVAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 405 Query: 290 LWM 292 + Sbjct: 406 AKL 408 >gi|315932562|gb|EFV11494.1| carbamoyl-phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni 327] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 86/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTAISVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|315123855|ref|YP_004065859.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017577|gb|ADT65670.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 746 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 >gi|307747219|gb|ADN90489.1| Carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni M1] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|284102430|ref|ZP_06386048.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830322|gb|EFC34555.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria sp. WGA-A3] Length = 1100 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V I+ + V +L +PD Sbjct: 29 SGTQACKTLKQEGYEVVLINSNPATIMTDPELADRTYIEPITVEVVERILEEERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + LE + + A + D+ K+ + + G+ S Sbjct: 89 TMGGQTALNVTMSLQERGALEKYNVQLIGANYEAINKAEDRDAFKRAMDNIGLATPTSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I M+ ++ P +++P G + + D+ + + + LIE+ Sbjct: 149 IRNREDAMNFLEIVGFPAIVRPSFTLGGAGGNIAYNREEFERDVDWALLTSPVGEALIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I P +F + + + + + Sbjct: 209 SLIGWKEYELEVMRDLNDNVVIVCPIENFDAMGIHTGDSITVAPAMTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IRIIQEIGVETGGSNIQFALNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 39.5 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G + + D D S L L + N++ G Sbjct: 615 ALRELGIETIMVNCNPETVSTDYDTSDRLYFEPLVEEDVLNIMEVERPMGVVVQFGGQTP 674 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P + Sbjct: 675 LKLALPLARAGIPILGTSPDAIDRAEDRERFSALITTLGLRQPRNGAARSGDEASAVASR 734 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + ++ + S+ + + LLI+QY D IE+ + Sbjct: 735 IGYPVIVRPSYVLGGRAMQIVYDEPSLRSYVENTVMTADQFPLLIDQYLTDAIEVDVDAV 794 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P + ++ ++ + + G Sbjct: 795 SDGAEVVVAGIMEHVEEAGIHSG---DSACSLPPHSLTPELIDRIRTQTVALARELQVVG 851 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F +V LE+N + T P ++ G +L Sbjct: 852 LMNVQFAV--QENEVSILEVNPRASRT----VPFVSKTIGVPLAKL 891 >gi|283955701|ref|ZP_06373192.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792656|gb|EFC31434.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 84/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F +++ +E+N + T Sbjct: 793 SACSLPPCSIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHH--NELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|86151232|ref|ZP_01069447.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85841579|gb|EAQ58826.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|251797846|ref|YP_003012577.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. JDR-2] gi|247545472|gb|ACT02491.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. JDR-2] Length = 1072 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGYEVVLINSNPATIMTDTNMADKVYIEPITLDFVSQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGVLEQENVKLLGTQLTAIEKAEDRDLFRDLMRELEQPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTVEEAVTFANEIGYPIIVRPAYTLGGTGGGICGNEEELRETVASGIRYSPISQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDANNNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V V+ KP G Sbjct: 589 AIQNAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I + + +A K + + P ++ +++ Sbjct: 649 INLAAPLTKAGVRILGSSLESIDTAEDRKKFEALLRNLNIAQPEGSTVTSVDQAVETAQK 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D+ + + + N +LI++Y+ G E + Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEVAVKINPEHPVLIDRYMLGKEAEVDAIC 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + DI ++ + +A+ G+ Sbjct: 769 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQSLSDDIKNQIVDITVNIAKALKVIGL 825 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ + KV+ +E+N + T P ++ L + Sbjct: 826 VNIQFVI--HNEKVYVIEVNPRSSRT----VPFLSKVTDLPMANLATKAI 869 >gi|59711080|ref|YP_203856.1| carbamoyl phosphate synthase large subunit [Vibrio fischeri ES114] gi|59479181|gb|AAW84968.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri ES114] Length = 1076 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ +D Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLELLQPENATVTTMEQAIDKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F KV+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|260549216|ref|ZP_05823436.1| carbamoyl-phosphate synthase large subunit [Acinetobacter sp. RUH2624] gi|260407622|gb|EEX01095.1| carbamoyl-phosphate synthase large subunit [Acinetobacter sp. RUH2624] Length = 1076 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R ++ + + Sbjct: 89 TMGGQTALNCALALDENGVLAKYNVELIGATKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L++ ++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++ E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEVQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|221124414|ref|XP_002164112.1| PREDICTED: similar to ADP-forming, carbamate-phosphorylating [Hydra magnipapillata] gi|260220956|emb|CBA29040.1| Carbamoyl-phosphate synthase large chain [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1084 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A KPD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ ++ + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWHHGVLDKYKVELIGATPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMEEAWAVQKTLGFPTVIRPSFTLGGTGGGIAYNSEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 94/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 646 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + + P + + Sbjct: 647 GGQTPLKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHALNLRQPPNATARTEAEAL 706 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 707 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 765 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + D E++R A+ Sbjct: 766 CDVDCIRDATGDTFIGGVMEHIEQAGVHSGDSACSLPPYSLHADTVTEIKRQTKAMAGAL 825 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F + K ++ LE+N + T P ++ G ++ Sbjct: 826 NVVGLMNVQFAIQNVDGKDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 876 >gi|219849332|ref|YP_002463765.1| carbamoyl-phosphate synthase large subunit [Chloroflexus aggregans DSM 9485] gi|219543591|gb|ACL25329.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus aggregans DSM 9485] Length = 1096 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + S+ ++A +PD Sbjct: 29 SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + IL+ + + + A ++ D+ R K + G+ V S Sbjct: 89 TVGGQTALNLAVALHEAGILDKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + Q+LIE+ Sbjct: 149 ATTLDEALAVVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRAIVERGLDASPVSQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYERMRDMG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F P +++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 94/297 (31%), Gaps = 34/297 (11%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L G++ + D D V V+ +PD G Sbjct: 593 LRALGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNVVEEERPDGVIIQFGGQTPL 652 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + A D+ + + P S + I Sbjct: 653 KLARALEAVGVPIWGTMPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALSVARRI 712 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P V++P + ++ D S+ + ++ + + +LI+++++ + D Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDDASLERYMREAVAASPEHPVLIDRFLED---AFEMDVD 769 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRGI 243 A D + + S +S V+P + + + R +A+G G+ Sbjct: 770 AVCDGETVVIAGIMEQIELAGVHSGDSACVIPTYMVAEEHVATMRRYTEQLARALGVVGL 829 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + V+ LE+N + T P +A G + +L V+ A+ R Sbjct: 830 MNIQYAM--KDGVVYVLEVNPRASRT----VPFVAKATGVPWAQLA---VQCAAGAR 877 >gi|110833179|ref|YP_692038.1| carbamoyl phosphate synthase large subunit [Alcanivorax borkumensis SK2] gi|110646290|emb|CAL15766.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax borkumensis SK2] Length = 1072 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R + + S G+ S + Sbjct: 89 TMGGQTALNCALDLDHNGVLKEFGVEMIGATEDAIDKAEDRSRFDKAMKSIGLECPRSAI 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + S L + P +I+P G V + + + ++LLI++ Sbjct: 149 AHNMEEASAALESLGFPCIIRPSFTMGGSGGGVAYNREEFEEICQRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + ++ Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKELQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A KP G + I T + Sbjct: 613 DRLYFEPITL---EDVLAIVAKEKPKGVIVQYGGQTPLKLARALQAAGVPIIGTPPDAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + I P V++P + ++ Sbjct: 670 EAEDRERFQQMVNKLGLKQPPNRTARSMEDGVRLAEEIGYPLVVRPSYVLGGRAMEIVYG 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + S ++ +L+++++D IE+ + D + V + + Sbjct: 730 EAELRNYMMNAVSVSNDSPVLLDRFLDDAIEVDVDAVCDGTDVVIGGIMQHIEQAG---V 786 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + D+ +++ A +G G+ F + +V+ LE+N + Sbjct: 787 HSGDSACSLPPYSLDDDVQDVMRQQAADMALELGVVGLMNVQFAV--KNGEVYVLEVNPR 844 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G S ++ Sbjct: 845 ASRT----VPYVSKCIGVSLAKVAAR 866 >gi|261338962|ref|ZP_05966820.1| hypothetical protein ENTCAN_05164 [Enterobacter cancerogenus ATCC 35316] gi|288318790|gb|EFC57728.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cancerogenus ATCC 35316] Length = 1074 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867 >gi|50085901|ref|YP_047411.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ADP1] gi|49531877|emb|CAG69589.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ADP1] Length = 1077 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +LE + + A + D+ Q + G+ + + Sbjct: 89 TMGGQTALNCALALDENGVLEKYGVELIGASKDAIEKAEDRKLFDQAMRKIGLECPKAAI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ Q P +I+P G + + + + QLLI++ Sbjct: 149 AENIQEALEIQSKFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 86/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + M Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ D + L + ++ +L++ ++D E+ Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSDTIQNEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGDDVYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866 >gi|82750808|ref|YP_416549.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus RF122] gi|123549035|sp|Q2YXG5|CARB_STAAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|82656339|emb|CAI80756.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus RF122] Length = 1057 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNYLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELTTLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|86153906|ref|ZP_01072109.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612525|ref|YP_999993.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|167004949|ref|ZP_02270707.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|85842867|gb|EAQ60079.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250448|gb|EAQ73406.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 1089 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAADEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F + + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINSKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDVAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|224541435|ref|ZP_03681974.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM 15897] gi|224525627|gb|EEF94732.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM 15897] Length = 1065 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G +V I+ D+ + ++ KPD Sbjct: 30 GTQACRALKEEGIEVVLINSNPATIMTDKDIADHVYIEPLTVPVVKNLILKEKPDSILPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + + + LE + + L+ D+ + V + Sbjct: 90 LGGQNALNIAMALDDEGFLEAHNVRTIGTNTTTIKLAEDRLEFKELMERIHEPVAASTVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P V++P G + + + + + Q LIE+ Sbjct: 150 NHVDDALEFAEKIGYPVVVRPAYTLGGTGGGIAETPEELHDICTNGLRLSRVSQCLIERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +G F +P S + +E+N P ++ S + GY +L Sbjct: 269 LNIITALNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL AG++ + D D V ++ KPD A G Sbjct: 578 CVWALRAAGYETIIVNNNPETVSTDFDIADRLYFEPLTQEDVQSIVELEKPDGAIVQFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + + +A ++ P ++ ++ Sbjct: 638 QTAIKLTQDLMDMGVPILGTSADSVDAAEDRERFDEVLEKCEIDRPRGATVFTVDEALEV 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + D I + + +LI++Y+ G E+ Sbjct: 698 ANKLGYPVLVRPSYVLGGAGMEIALNDGDIKKFMKIINRQFQEHPILIDKYLSGKEVEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + + P KI +I K + +A+ Sbjct: 758 AVCDENGVLIPGVMEHVERAG---VHSGDSISVYPPQKIKPEIKKVICDYTQRLAKALHV 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 815 IGLINIQFIV--YEDEVYVIEVNPRSSRT----IPYISKVTDIPVVDVATKVI 861 >gi|315057703|gb|ADT72032.1| Carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni S3] Length = 1089 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + G + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYIQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKAMGIPLAKVATR 868 >gi|256419162|ref|YP_003119815.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM 2588] gi|256034070|gb|ACU57614.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM 2588] Length = 353 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 66/328 (20%), Positives = 117/328 (35%), Gaps = 46/328 (14%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH------ 59 GG S SG A AL + VS + + + L + PD +LH Sbjct: 30 GGYS-------DSGADIAYALREKQVPVSTPVIHPQLMIDLDWVFPDTEAGILHALSKGA 82 Query: 60 -----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 +G I + L DK + +++ +P+ P+IL+N Sbjct: 83 QVLWLNTILYNGHPVEAFLKKGIAAVGQLPRNTDLYDDKWTTNKLLQKNNLPIPPAILIN 142 Query: 115 RFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYV 172 + D Q S P V KP++G S G+ V+ + L + +G + +E+++ Sbjct: 143 KDNLHDYQLHFSFPAVAKPIRGRGSDGVQVVDTADGLHKVLKEMFAEDKYGTAVYVEKFL 202 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV----- 227 G E+T VM + +I K +++S + V P + + Sbjct: 203 PGREVTITVMPPGKYMIRDICQEKINYWSLPPVERFNHEDGVAPYNGTVAVVNNSKVLDD 262 Query: 228 -----------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT------- 269 + A +G + R D D + F ++N++P MT Sbjct: 263 AQLQSPAIITLCKQCESAAALVGAKAPVRIDCRQDEQ-GRYFLFDLNMKPNMTGASRPHR 321 Query: 270 --PVSIFPEMAAYAGYSFRELLLWMVED 295 S+ A G++F +LL M+ Sbjct: 322 MDQDSLSALAARKIGWTFADLLENMLRQ 349 >gi|148926982|ref|ZP_01810658.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni CG8486] gi|145844390|gb|EDK21499.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 1095 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 35 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 94 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + G + + +P Sbjct: 95 TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 154 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 214 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 215 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 274 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 275 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 625 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 681 Query: 93 KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 682 RKKFAEFITKLGINQPKNFTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 742 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 798 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 799 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 856 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 857 ----VPFVSKATGIPLAKVATR 874 >gi|57237334|ref|YP_178347.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni RM1221] gi|57166138|gb|AAW34917.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni RM1221] Length = 1089 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + G + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 84/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RFYIQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKAMGIPLAKVATR 868 >gi|238755529|ref|ZP_04616868.1| Carbamoyl-phosphate synthase large chain [Yersinia ruckeri ATCC 29473] gi|238706285|gb|EEP98663.1| Carbamoyl-phosphate synthase large chain [Yersinia ruckeri ATCC 29473] Length = 1077 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERHGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + T + A ++ + P ++ +D Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867 >gi|260588555|ref|ZP_05854468.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM 20583] gi|260541030|gb|EEX21599.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM 20583] Length = 1072 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVDRLTEIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G E+ +L+ + + A + D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ ++ + + + + +Q+L+E+ Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E V +I++ + ++ + I D+ +++ Sbjct: 209 SVIGWE-ELEVEVVRDKAGKKISICFIENIDPMGVHTGDSFCSAPMLTISQDLQDRLEKQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A ++IG G + F DP S ++ +EIN + T S + G+ Sbjct: 268 AHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINPR---TSRSS-ALASKATGFPIA 319 Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 33/295 (11%) Query: 22 CASA--LEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVL 58 +A L + GF+ + D D S L KP Sbjct: 576 VHAAFTLRELGFETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVMSIYNKEKPLGIIVQF 635 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ A D + +P + + Sbjct: 636 GGQTPLNIAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEAL 695 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + H I P +++P G+ V+ D + + + +L+++++ + Sbjct: 696 EIAHRIGYPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFL---QNA 752 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQA 237 DA D T VP + + S +S V+P+ + KE +++ Sbjct: 753 LECETDAISDGTHAFVPTVMQHIEQAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACE 812 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +G G+ + KV+ LE N + T P ++ + + + Sbjct: 813 MGVVGLMNMQYAICE--DKVYVLEANPRASRT----VPLVSKVCNINMANIATKL 861 >gi|301299457|ref|ZP_07205733.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852939|gb|EFK80547.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1061 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +++ T + A + + + VP + Sbjct: 89 TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + + + + + Q LIE+ Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + +F + + Y+ ++ Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ G++ + D S+ L L + NV+ G Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + P+ + + Sbjct: 639 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +Q + L Q++ +L++ Y+ G+E + Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P +I +++ A+ C G Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + + + LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 >gi|300214099|gb|ADJ78515.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Lactobacillus salivarius CECT 5713] Length = 1061 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +++ T + A + + + VP + Sbjct: 89 TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + + + + + Q LIE+ Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + +F + + Y+ ++ Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ G++ + D S+ L L + NV+ G Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + P+ + + Sbjct: 639 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +Q + L Q++ +L++ Y+ G+E + Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P +I +++ A+ C G Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + + + LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 >gi|238925027|ref|YP_002938543.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656] gi|238876702|gb|ACR76409.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656] Length = 332 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 114/288 (39%), Gaps = 16/288 (5%) Query: 20 KACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNF--GEDGLVQAILEL 74 A++ G+ + + + N G A+LE+ Sbjct: 35 TEIMDAIKSLGYNCDYFGGIPELIHAIDTNQSFDDSIFLNFSDGMDEDYSRIQAPALLEI 94 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131 L +PY+ SG+ SAL +K K+ + + G+ + S +VN P +K Sbjct: 95 LNVPYSGSGVFPSALMNNKHFCKKALLNLGIRMPKSCIVNHDFPLNCAQLRKWKYPLFVK 154 Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGDASLDVT 190 P GSSLGI +I + + + +++IE+YV+GI++T ++G+ + Sbjct: 155 PNCEGSSLGISNDCVCHTIDEVIKKCNKLLMDFQEIIIEEYVEGIDVTNYLIGNNASYYI 214 Query: 191 EIA-------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 Y K + L + + IP ++ + ++R + L Q +G I Sbjct: 215 NSIVTAKLFDESSYAIYGINEKQNKLRTLFIDDEYIPTNLVEAIKRQSILIAQTLGVHDI 274 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 R D+ + ++ ++EIN P + S +A F +++ + Sbjct: 275 CRIDYRVNVSKQEFDFIEINSAPRFSSTSEIGFIAQKNNILFSKMVQY 322 >gi|227891888|ref|ZP_04009693.1| carbamoyl phosphate synthase large subunit [Lactobacillus salivarius ATCC 11741] gi|227866351|gb|EEJ73772.1| carbamoyl phosphate synthase large subunit [Lactobacillus salivarius ATCC 11741] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + SV ++ PD Sbjct: 44 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 103 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +++ T + A + + + VP + Sbjct: 104 TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 163 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + + + + + Q LIE+ Sbjct: 164 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 223 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + +F + + Y+ ++ Sbjct: 224 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 282 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 283 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 338 Query: 291 WM 292 + Sbjct: 339 KI 340 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 93/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ G++ + D S+ L L + NV+ G Sbjct: 594 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + P+ + + + Sbjct: 654 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATIQEQVIACAE 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +Q + L Q++ +L++ Y+ G+E + Sbjct: 714 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P +I +++ A+ C G Sbjct: 774 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + + + LE+N + T P ++ G ++ ++ Sbjct: 831 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 875 >gi|90961175|ref|YP_535091.1| carbamoyl phosphate synthase large subunit [Lactobacillus salivarius UCC118] gi|122449391|sp|Q1WVA9|CARB_LACS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|90820369|gb|ABD99008.1| Carbamoyl-phosphate synthase large chain [Lactobacillus salivarius UCC118] Length = 1061 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +++ T + A + + + VP + Sbjct: 89 TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + + + + + Q LIE+ Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + +F + + Y+ ++ Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ G++ + D S+ L L + NV+ G Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + P+ + + Sbjct: 639 AINLAAGLEAHSVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATTQEQVIACAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +Q + L Q++ +L++ Y+ G+E + Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P +I +++ A+ C G Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + + + LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 >gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp. Marseille] gi|151280535|gb|ABR88945.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp. Marseille] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + DV ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHNGVLTKYKCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLIE+ Sbjct: 149 SHTLEESWAVQKELGFPVIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFSINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 37/300 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPYGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 637 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKMLHDLKLRQPPNRTARTEEDAL 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ +H +L++++ D IE+ Sbjct: 697 RLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R L + Sbjct: 757 DVDCLSDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQETIDELKRQTSLMAKG 813 Query: 238 IGCRGISRSDFLFDPL--SRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F K VF LE+N + T P ++ G ++ Sbjct: 814 LNVVGLMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRT----VPYVSKATGLQLAKIAAR 869 >gi|311280978|ref|YP_003943209.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae SCF1] gi|308750173|gb|ADO49925.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae SCF1] Length = 1074 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKD 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQNVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|260775356|ref|ZP_05884253.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus ATCC BAA-450] gi|260608537|gb|EEX34702.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus ATCC BAA-450] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIEQAVEKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|20094347|ref|NP_614194.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] gi|22095504|sp|Q8TWX0|CARB1_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal section; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|19887409|gb|AAM02124.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] Length = 564 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V + D + R V ++ +PD Sbjct: 27 SGSQACKALREEGVEVVLVNSNPATIMTDPNMADRVYLEPLDARIVAKIIEEERPDGILP 86 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G D + +E+ T + A D+ R+ V + Sbjct: 87 TLGGQTGLNIAVELDEMGVLEEYDVEVLGTSVETIVRAEDRDEFRAFMKKIGEPVCASEA 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G + + ++ + + + ++ +Q+LIE+ Sbjct: 147 VSSVEEAKEVAEEIGYPVVVRPAYTLGGTGGGIAEDEEELKRVVERGLEYSRVNQVLIEE 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 YV G + + ++ + + + ++ ++ Sbjct: 207 YVGGWAEIEYEVMRDGSGNCITVCSMENVDPMG-VHTGESIVVAPAQTLTEEEHQMLRSA 265 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A A+G G F + + +E+N P ++ S + GY Sbjct: 266 ALHIIDALGVEGGCNIQFALHRETGEYRVIEVN--PRVSRSS--ALASKATGYP 315 >gi|311086459|gb|ADP66540.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 1079 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++ KPD Sbjct: 29 SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + + A + ++ + + + C Sbjct: 89 TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/323 (12%), Positives = 106/323 (32%), Gaps = 47/323 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ + D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ KP G + E + I T + +A + Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + P+ ++L +I P +++P + ++ + + Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + N+ +L++QY+D E+ + D + + + +S Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + + + E++R + +G+ F + K++ +E+N + T Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292 P ++ G + ++ + + Sbjct: 850 ----VPFVSKATGLALAKISVRI 868 >gi|311085887|gb|ADP65969.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 1079 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++ KPD Sbjct: 29 SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + + A + ++ + + + C Sbjct: 89 TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ + D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ KP G + E + I T + +A + Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + P+ ++L +I P +++P + ++ + + Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + N+ +L++QY+D E+ + D + + + +S Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + + + E++R + +G+ F + K++ +E+N + T Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G + ++ Sbjct: 850 ----VPFVSKATGLALAKI 864 >gi|219681519|ref|YP_002467904.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471200|ref|ZP_05635199.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624362|gb|ACL30517.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087040|gb|ADP67120.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 1079 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++ KPD Sbjct: 29 SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + + A + ++ + + + C Sbjct: 89 TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ + D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ KP G + E + I T + +A + Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + P+ ++L +I P +++P + ++ + + Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + N+ +L++QY+D E+ + D + + + +S Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + + + E++R + +G+ F + K++ +E+N + T Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G + ++ Sbjct: 850 ----VPFVSKATGLALAKI 864 >gi|219682075|ref|YP_002468459.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621808|gb|ACL29964.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 1079 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++ KPD Sbjct: 29 SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + + A + ++ + + + C Sbjct: 89 TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ + D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ KP G + E + I T + +A + Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + P+ ++L +I P +++P + ++ + + Sbjct: 675 RYRFQKTVNKLRLQQPLNTTVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + N+ +L++QY+D E+ + D + + + +S Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + + + E++R + +G+ F + K++ +E+N + T Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G + ++ Sbjct: 850 ----VPFVSKATGLALAKI 864 >gi|15616764|ref|NP_239976.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11131697|sp|P57244|CARB_BUCAI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|25293875|pir||F84946 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [imported] - Buchnera sp. (strain APS) gi|10038827|dbj|BAB12862.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 1079 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++ KPD Sbjct: 29 SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYVEPIHWEIVEKIIQKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + + A + ++ + + + C Sbjct: 89 TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + +L GG + G+ A AL + GF+ + D+ Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ KP G + E + I T + +A + Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + P+ ++L +I P +++P + ++ + + Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + N+ +L++QY+D E+ + D + + + +S Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + + + E++R + +G+ F + K++ +E+N + T Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G + ++ Sbjct: 850 ----VPFVSKAIGLALAKI 864 >gi|50294352|ref|XP_449587.1| hypothetical protein [Candida glabrata CBS 138] gi|49528901|emb|CAG62563.1| unnamed protein product [Candida glabrata] Length = 1834 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 82/286 (28%), Gaps = 27/286 (9%) Query: 23 ASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 A AL+ G V + + + + D +G E+ E I + Sbjct: 676 AQALD--GHTVEETYLHVEKIISIAKKYDVDAIIPG-YGFLSENASFADRCEQEGIQFIG 732 Query: 82 SGILASA---LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138 L + VP P + I P ++K GG Sbjct: 733 PRGETIRKLGLKHSAREVAKSAGVPLVPGSPLVKNADEAFTIAKNIGYPVMVKSTAGGGG 792 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 +G+ + +Q + +++ + + + Sbjct: 793 IGLQKVDNEQDMRKAFETVKHQGSSYFGDSGVFMEKFIDNARHVEVQIMGDGKGKTLALG 852 Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 L+ + PA P + +++ A + RG +F++D + Sbjct: 853 ERDCSLQRRNQKVIEETPAPNLPRETRQKMLTAAERLGAYLNYRGAGTVEFIYDEQRDQF 912 Query: 258 FWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297 ++LE+N + + G +L+ WM++ ++ Sbjct: 913 YFLEVNTR----------LQVEHPITEMVTGL---DLVEWMIKISA 945 >gi|77456994|ref|YP_346499.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens Pf0-1] gi|77380997|gb|ABA72510.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens Pf0-1] Length = 1073 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKAIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 87/284 (30%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V + KP G Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ K++ + L + ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPARIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGISLA 861 >gi|332974637|gb|EGK11554.1| carbamoyl-phosphate synthase, large subunit [Kingella kingae ATCC 23330] Length = 1070 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + ++V ++A +PD Sbjct: 29 SGAQACKALCEEGYKVILVNSNPATIMTDPNIADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 15/177 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P V++P + V+ ++ + + ++ + +L++ + + IE+ Sbjct: 699 AEEIGYPLVVRPSYVLGGRAMQVVHSEEQLQRYMREAVQVSEDSPVLLDFFLNNAIEVDV 758 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + ++ + P + ++I E++R A+ Sbjct: 759 DCVSDGKEVVIGGIMQHVEQAGIHSG---DSACSLPPYSLSVEIQDEIRRQTKAMAFALN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287 +G+ F VF LE+N P ++ + P A AG S +E Sbjct: 816 VKGLMNVQFAV--QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLQE 870 >gi|315929563|gb|EFV08752.1| Carbamoyl-phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni 305] Length = 990 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIDFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----IPFVSKATGIPLAKVATR 868 >gi|332876149|ref|ZP_08443931.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6014059] gi|322509164|gb|ADX04618.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii 1656-2] gi|323519192|gb|ADX93573.1| carbamoylphosphate synthase large subuni [Acinetobacter baumannii TCDC-AB0715] gi|332735647|gb|EGJ66692.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6014059] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L++ ++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|184159250|ref|YP_001847589.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii ACICU] gi|183210844|gb|ACC58242.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Acinetobacter baumannii ACICU] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L++ ++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|169632633|ref|YP_001706369.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii SDF] gi|169151425|emb|CAP00159.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D+ V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDISDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L++ ++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQNEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|169794964|ref|YP_001712757.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AYE] gi|213157625|ref|YP_002320423.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AB0057] gi|215482515|ref|YP_002324703.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate synthetase ammonia chain) [Acinetobacter baumannii AB307-0294] gi|239503381|ref|ZP_04662691.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate synthetase ammonia chain) [Acinetobacter baumannii AB900] gi|260556446|ref|ZP_05828664.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii ATCC 19606] gi|301346070|ref|ZP_07226811.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AB056] gi|301511498|ref|ZP_07236735.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AB058] gi|301595421|ref|ZP_07240429.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AB059] gi|332855123|ref|ZP_08435706.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6013150] gi|332868231|ref|ZP_08438073.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6013113] gi|169147891|emb|CAM85754.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AYE] gi|193078157|gb|ABO13100.2| carbamoyl-phosphate synthase large subunit [Acinetobacter baumannii ATCC 17978] gi|213056785|gb|ACJ41687.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii AB0057] gi|213987785|gb|ACJ58084.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate synthetase ammonia chain) [Acinetobacter baumannii AB307-0294] gi|260409705|gb|EEX03005.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii ATCC 19606] gi|332727626|gb|EGJ59045.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6013150] gi|332733492|gb|EGJ64662.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter baumannii 6013113] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P +I+P G + + + + QLLI++ Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ + + L ++ ++ +L++ ++D E+ Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|88597206|ref|ZP_01100441.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218561941|ref|YP_002343720.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095538|sp|Q9PIL7|CARB_CAMJE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|88190267|gb|EAQ94241.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359647|emb|CAL34432.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 1089 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIDFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----IPFVSKATGIPLAKVATR 868 >gi|218781319|ref|YP_002432637.1| carbamoyl-phosphate synthase, large subunit [Desulfatibacillum alkenivorans AK-01] gi|218762703|gb|ACL05169.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum alkenivorans AK-01] Length = 1075 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGTQACKALKEEGYEVVLVNSNPATIMTDPETADRTYVEPVTPDAVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + ++ +LE + + + + D+ + + + G+ V S Sbjct: 89 TLGGQTGLNTAIEVAKRGVLEKYGVEMIGARVEVIEKAEDRELFRTAMENIGLSVPQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + + Q+++EQ Sbjct: 149 VHTLEEARKAAKDIGFPIIIRPSYTLGGTGGGIAYNVEDLDVFVKSGLDASLIHQVMLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + Sbjct: 209 SVLGWKEFELEVMRDKADNVVIICSIENMDPMGVHTGDSITVAPAQTLTDKQYQIMRDAT 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 LAVMREIGVDTGGSNVQFAVNPENGDMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + + D D V + KP G Sbjct: 589 ALREEGVESIMVNSNPETVSTDYDTSDKLYFEPLTAEDVLHIAESEKPAGVIVQFGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + + P + + T+ Sbjct: 649 LNIATAINKAGVPIIGTQPESIDRAEDRELFKVMLKKLGLVQPENGTAMDIPGTLAIAEE 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ ++ + G +LI+++++ V Sbjct: 709 IGYPVIVRPSFVLGGRAMKIVYDSSALEEFAREAIVASEGHPVLIDKFLEN---AVEVDV 765 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 DA D V + E S +S VLP K + I +++ + + G Sbjct: 766 DAVCDGETTIVAGIMEHIEEAGIHSGDSACVLPPKSLSENIKNQIRTATQALAKELNVIG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + ++F +E+N + T P ++ G + ++ Sbjct: 826 LMNIQYAV--KDEELFVIEVNPRASRT----VPFVSKATGVPWAKIATK 868 >gi|315646059|ref|ZP_07899180.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex V453] gi|315278820|gb|EFU42134.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex V453] Length = 1068 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGIEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELEQPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 MD I P +++P G + ++ + + ++ Q LIE+ Sbjct: 150 TTLEEAMDFADEIGYPLIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMHVIEQEKPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A K + P +++ +++ Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLDIAQPKGKTVISVDDAVETAQS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + + ++ N +LI++Y+ G E+ + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ +++ + + + RG+ Sbjct: 768 DGDTVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKEKITEITIKIAKELNTRGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G L + Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868 >gi|56964098|ref|YP_175829.1| carbamoyl phosphate synthase large subunit [Bacillus clausii KSM-K16] gi|56910341|dbj|BAD64868.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Bacillus clausii KSM-K16] Length = 1062 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 99/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGYEVILINSNPATIMTDTAMADRVYIEPLTLEFVTRIIRKERPDGLLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + ++ LE +I + + A + D+ + + V VP + Sbjct: 90 LGGQTGLNMALELKNAGILEQYQIELLGTKLDAIEQAEDREQFRALMNVLGEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +I+P G + D+ + + ++ Q L+E+ Sbjct: 150 HTLDEAFAFVETIGYPVIIRPAYTLGGTGGGIAYNDEDLAEIVASGLKYSPVTQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ A Sbjct: 210 IAG-FKEVEYEVMRDSKDEAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNDYQMLRNSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F D S + + +E+N P ++ S + GY ++ Sbjct: 269 LSIIRALGIEGGCNVQFALDAHSDQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V V+ KP G Sbjct: 580 AIKEAGYEAIIMNNNPETVSTDFSTSDKLYFEPLTVEDVMHVVGLEKPKGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A DK V P+ + + Sbjct: 640 INLAAALAERGVSIIGTTLEDMDRAEDRDKFEQTLVELGIPQPLGKTATSVDGAVAIARK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +L+++Y+ G EL + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLRYMQTAVKVNPKHPVLVDRYLTGKELEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P +P + + + + + G+ Sbjct: 760 DGNDVYIPGIMEHIERAG---VHSGDSIAVYPPQTVPDHLKQRLIERTTSIAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F++ V+ LE+N P ++ ++ P Sbjct: 817 LNIQFVWHKDD--VYVLEVNPRSSRTVPFLSKITGVPMA 853 >gi|258515564|ref|YP_003191786.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum acetoxidans DSM 771] gi|257779269|gb|ACV63163.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum acetoxidans DSM 771] Length = 1074 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57 G AL + G +V I +D V VL KPD Sbjct: 30 GTQACRALREEGLEVVLVNSNPATIMTDSNMADRIYIDPLTPEFVTKVLKKEKPDGLLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +Q +LE + + + + + D+ +S + +P + Sbjct: 90 LGGQVGLNMALQLAKSGVLEETGVQLLGTPLESIIKAEDREGFKSMMQSINEPIPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P V++P G ++ + + + +Q+L+E+ Sbjct: 150 SSVEDAVKFAERVGFPLVVRPAYTLGGTGGGMVYNMAELKSTATRGIRHSIINQILVERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S+D + + + Y+ ++ + Sbjct: 210 LVGWKEIEFEVMRDSMDNCITICSMENIDPMGIHTGDSIVVAPC-QTLSDKEYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G + DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGVHGGCNVQYALDPDSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 89/290 (30%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG + I D D V +L + KP+ G Sbjct: 585 ALREAGIEAIIINNNPETVSTDFDTADRLYFEPMLPEDVLNILENEKPEGVIVQFGGQTA 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A ++ + P ++ + Sbjct: 645 INLAKPLENAGIKILGTSVENIDRAEDRERFDRLLSKLNIPRPAGNTVFSVTEAIGVADE 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + +L+++Y+ G EL + Sbjct: 705 IGYPVLVRPSYVLGGRAMEIVYNEIDLLNYMASAVKVTPEHPVLVDKYLCGKELEVDAIS 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + I + + + +G+ Sbjct: 765 DGKDVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSDRIRGLLVDYTTRLAKELNVKGV 821 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P M+ G L ++ Sbjct: 822 INIQYVLHE--DQLYVLEVNPRSSRT----VPYMSKITGIPMVNLATKII 865 >gi|28897245|ref|NP_796850.1| carbamoyl phosphate synthase large subunit [Vibrio parahaemolyticus RIMD 2210633] gi|153838433|ref|ZP_01991100.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AQ3810] gi|260366314|ref|ZP_05778766.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus K5030] gi|260876212|ref|ZP_05888567.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AN-5034] gi|260897166|ref|ZP_05905662.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus Peru-466] gi|260902207|ref|ZP_05910602.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AQ4037] gi|31340007|sp|Q87SF3|CARB_VIBPA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|28805454|dbj|BAC58734.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149748196|gb|EDM59055.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AQ3810] gi|308087977|gb|EFO37672.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus Peru-466] gi|308093037|gb|EFO42732.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AN-5034] gi|308108468|gb|EFO46008.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus AQ4037] gi|308114738|gb|EFO52278.1| carbamoyl-phosphate synthase, large subunit [Vibrio parahaemolyticus K5030] Length = 1077 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTAMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|320540424|ref|ZP_08040074.1| putative carbamoyl-phosphate synthase large subunit [Serratia symbiotica str. Tucson] gi|320029355|gb|EFW11384.1| putative carbamoyl-phosphate synthase large subunit [Serratia symbiotica str. Tucson] Length = 1074 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGVQACKALREEGYRVILVNSNPATIMTDPETADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +L + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRRRFDMAMKKIGLDTARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTLEEALAVAAEVGFPCIIRPSFTMGGTGGGIAYNREEFEEICQRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELVDDI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVALEDVLEIVRIEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ Sbjct: 648 LKLARELEAAGMPIIGTSPDAIDRAEDRERFQQVVNRLGLKQPANATVTTVEQAVEQAAS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + S ++ +L++++ D +E+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLNDAVEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + + DI +++ + RG Sbjct: 768 CDGECVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKDIQDIMRQQVAKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + KV+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNHKVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|307266588|ref|ZP_07548119.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918385|gb|EFN48628.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 250 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 15/187 (8%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P KP+ G S GI ++ + G LIE++++G E+T G+ Sbjct: 58 LKFPLFAKPISGRGSAGIDEENIIYDKDKLPQVVSKITDKIGQAALIEEFIEGKEVTVGI 117 Query: 182 MGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 +G V + + N P ++ ++ ++++ A ++ + Sbjct: 118 IGYKHPQVLPLLEVGYNNVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLN 177 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELL 289 + +R D + ++LE+N G+T S MA AG + E + Sbjct: 178 AKDFARIDMILS-KDNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFI 236 Query: 290 LWMVEDA 296 ++E A Sbjct: 237 RKIIESA 243 >gi|117926298|ref|YP_866915.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1] gi|117610054|gb|ABK45509.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1] Length = 1074 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + SV ++A +PD Sbjct: 29 SGAQACKALKEEGYEVVLVNSNPATIMTDPELADRTYVEPITLASVTRIIAKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + + +LE + + A + + D+ R KQ + G+ + Sbjct: 89 TMGGQTALNMALNLADAGVLEQYNVELIGASRDAISKAEDRERFKQAMDDIGLEMPKSGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHSMEEAWEIQTEVGYPTIIRPSFTLGGTGGGIAYNSEEFEEIIRRGLAASPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + LD I +F + + + Sbjct: 209 SVLGWKEFEMEVVRDRLDNAIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDVS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAIHPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 86/266 (32%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KPD G + + I T + Sbjct: 612 DRLYFEPLTF---EDVMTIVDIEKPDGVIVQFGGQTPLKLAKRLEAAGVPIIGTTPEAID 668 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + I P V++P + ++ Sbjct: 669 VAEDRERFQVLLQKLGLRQPPNGIARSEQEAIREAEAIGFPVVVRPSYVLGGRAMEIVHD 728 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + +LI+ + D IE+ + D V + + Sbjct: 729 VKDLERYMRTAVQASPDHPVLIDHFLRDAIEIDVDCIADGKTAVVAGIMEHIEEAG---V 785 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + LD+ E++R + A+ +G+ F V+ LE+N + Sbjct: 786 HSGDSACSLPPYSVGLDLINEIERQTKMLAAALEVKGLMNIQFAI--QKGAVYILEVNPR 843 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G F +L Sbjct: 844 ASRT----VPFVSKATGVPFAKLAAR 865 >gi|281357004|ref|ZP_06243494.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis ATCC BAA-548] gi|281316562|gb|EFB00586.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis ATCC BAA-548] Length = 1069 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 97/303 (32%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFN 56 SG AL G++V I+ S+ ++A +PD Sbjct: 29 SGTQACKALRALGYEVVLANSNPATIMTDPGMADHTYIEPLTVDSIEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + LE + + A D++ K+ ++ GVP+ S Sbjct: 89 NLGGQTALNLAISLHDGKILEKYGVQVIGVDLEAIKRGEDRIIFKETMNRLGVPMAKSEP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G ++ + + + + + + Q+L+E+ Sbjct: 149 CYSVEEAEKIASELGYPVVLRPAYTMGGTGGGIVYNVEELREVVARGLAASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 G + + + +S V P + + K++Q Sbjct: 209 CALG--WEELELEVVRDAKGNKITVCFIENVDPMGVHTGDSFCVAPMLTVPESVQKQLQD 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ A+G G + F + ++ +EIN + T S + G+ + Sbjct: 267 YAYRIVDAVGVTGGTNVQFAHNREDGRIIVIEINPR---TSRSS-ALASKATGFPIASVS 322 Query: 290 LWM 292 + Sbjct: 323 TQL 325 >gi|313835192|gb|EFS72906.1| hypothetical protein HMPREF9621_02809 [Propionibacterium acnes HL037PA2] gi|314929164|gb|EFS92995.1| hypothetical protein HMPREF9607_00846 [Propionibacterium acnes HL044PA1] gi|314970886|gb|EFT14984.1| hypothetical protein HMPREF9622_01951 [Propionibacterium acnes HL037PA3] Length = 69 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA 54 + VL GG+S +R++SL SG+ A AL G +V + D+D S+ L + Sbjct: 5 VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSSLIETLRCRRVSHV 58 >gi|169831463|ref|YP_001717445.1| carbamoyl-phosphate synthase, large subunit [Candidatus Desulforudis audaxviator MP104C] gi|226700927|sp|B1I4M8|CARB_DESAP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|169638307|gb|ACA59813.1| carbamoyl-phosphate synthase, large subunit [Candidatus Desulforudis audaxviator MP104C] Length = 1082 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 94/300 (31%), Gaps = 32/300 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + G +V I+ + V V++ +PD Sbjct: 30 GTQACRALREEGLEVVLINSNPATIMTDANMADRIYIEPLTPEFVAKVISQERPDALLPT 89 Query: 58 LHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111 L G G + Q IL+ + + + + + D+ K + VP I Sbjct: 90 LGGQTGLNLAKQVADAGILDQYGVRLLGTPLESIKRAEDREHFKNMCLEIGEPVPESSII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G V + + ++ + + Q+L+E+ Sbjct: 150 SDVDAAVAFARKIGYPVVVRPAYTLGGTGGGVAFSEDELREIAVRGLTMSIIHQVLVEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + + + + ++ ++ + Sbjct: 210 VLGWKEIEYEVMRDAAGNCITICSMENIDPMGIHTGDSIVVAPTQTLSDRE-HQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGVEGGCNVQFALDPESYDYYVIEVN--PRLSRSS--ALASKATGYPIAKVATK 324 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 30/294 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G K I D D V +L KPD G Sbjct: 595 ALKEQGVKAIIINNNPETVSTDFDTADRLYFEPLVPEDVMNILHKEKPDGVIVQFGGQTA 654 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ P + Sbjct: 655 INLARPVEKAGFNILGTSVADIDRAEDRERFDQLVAELGIPRPPGGTGFSVEEAQRIAEQ 714 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ Q + + + +L+++Y+ G EL + Sbjct: 715 VGFPVLVRPSYVLGGRAMEIVYNSQELLEYMADAVRVTPKHPVLVDKYLLGKELEVDAVC 774 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + P + +I +++ +A+ RG+ Sbjct: 775 DGETVLVPGIMEHVERAGIHSG---DSIAVFPPQTLTPEIKEQLFEYTQQIARALKIRGL 831 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ +VF LE+N + T P ++ G L + A+ Sbjct: 832 VNIQFVLHE--GRVFVLEVNPRSSRT----VPYLSKVTGIPMVNLATRICLGAT 879 >gi|330814383|ref|YP_004358622.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327487478|gb|AEA81883.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 370 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 104/287 (36%), Gaps = 16/287 (5%) Query: 20 KACASALEDAGFKVSQI-DVD-RSVGLVLAHLKPDLAFN-VLHGNFGEDGLV-QAILELL 75 + + L A + I ++ + LA KPDL F+ V + F E + LE Sbjct: 58 HSIFNILSSA-YNCVVITEIKSENDLKQLAIRKPDLVFSGVKYFTFNERIIWLNDYLETH 116 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPL 133 I Y SG A DK R+K+++ + Q + P +KP+ Sbjct: 117 GISYIASGREALEYEHDKSRAKEIMQKADIKTADFFTTEPGEYPDQESLPVKFPLFVKPV 176 Query: 134 KGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191 GG S GI + L+E ++ G E + G++ D+ Sbjct: 177 TGGDSRGIDFKSVVHDFKSFEAKVLDIKMKQKSTSLVETFLSGKEYSVGILQDSFSGTLN 236 Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK------IPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + L+ + +I+ ++ LA + A+G + + R Sbjct: 237 AMPVEIMVDKNINGHCILDFDIKKNDEEVVIAVTDKEIFNQLCNLAKKSFIALGGKSLGR 296 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 D + L + ++E N+ PG++ F S+ E++L + Sbjct: 297 IDIKMNHL-NEPHFIEANLMPGLSKGYFFRSCFLNLNMSYEEMILLI 342 >gi|325276150|ref|ZP_08141957.1| carbamoyl phosphate synthase large subunit [Pseudomonas sp. TJI-51] gi|324098726|gb|EGB96765.1| carbamoyl phosphate synthase large subunit [Pseudomonas sp. TJI-51] Length = 961 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL D G++ + D D S L L + V H G Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGS 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + + EV+ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKGVQDEVREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876 >gi|296313298|ref|ZP_06863239.1| carbamoyl-phosphate synthase, large subunit [Neisseria polysaccharea ATCC 43768] gi|296840205|gb|EFH24143.1| carbamoyl-phosphate synthase, large subunit [Neisseria polysaccharea ATCC 43768] Length = 1071 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALHEEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R K+ + G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65 AL ++GF+ + D D S L L + ++H Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ + +L++ + + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D+ V + + + + P + +I E++R A+G G Sbjct: 762 SDSKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858 >gi|148549791|ref|YP_001269893.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida F1] gi|148513849|gb|ABQ80709.1| carbamoyl-phosphate synthase large subunit [Pseudomonas putida F1] Length = 1055 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 11 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 70 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 71 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 130 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 131 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 190 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 191 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 250 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 251 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 306 Query: 291 WM 292 + Sbjct: 307 KL 308 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL D G++ + D D S L L + V H G Sbjct: 569 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 628 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 629 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGS 688 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 689 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 748 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + ++ EV+ +G G Sbjct: 749 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 805 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 806 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 858 >gi|167035715|ref|YP_001670946.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida GB-1] gi|166862203|gb|ABZ00611.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas putida GB-1] Length = 1073 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL + G++ + D D S L L + V H G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + S P ++ + + Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGG 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + ++ EV+ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876 >gi|170719895|ref|YP_001747583.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida W619] gi|169757898|gb|ACA71214.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas putida W619] Length = 1073 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL + G++ + D D S L L + V H G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGG 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + D+ +V+ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKDVQDQVRDQVRKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876 >gi|104780016|ref|YP_606514.1| carbamoyl phosphate synthase large subunit [Pseudomonas entomophila L48] gi|95109003|emb|CAK13699.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas entomophila L48] Length = 1073 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL + G++ + D D S L L + V H G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAISAAGG 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + ++ EV+ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSQEVQDEVRVQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876 >gi|24986476|gb|AAN70295.1|AE016670_5 carbamoyl-phosphate synthase, large subunit [Pseudomonas putida KT2440] gi|313500632|gb|ADR61998.1| CarB [Pseudomonas putida BIRD-1] Length = 1076 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 32 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 91 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 92 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 151 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 152 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 211 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 212 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 271 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 272 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 327 Query: 291 WM 292 + Sbjct: 328 KL 329 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL + G++ + D D S L L + V H G Sbjct: 590 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 649 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + S P ++ + + Sbjct: 650 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGS 709 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 710 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 769 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + ++ EV+ +G G Sbjct: 770 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 826 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 827 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 879 >gi|161378120|ref|NP_746831.2| carbamoyl phosphate synthase large subunit [Pseudomonas putida KT2440] gi|38257481|sp|Q88DU6|CARB_PSEPK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1073 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + SV ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63 AL + G++ + D D S L L + V H G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + S P ++ + + Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGS 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + ++ EV+ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288 + K++ +E+N P ++ S+ A AG + +EL Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876 >gi|239509132|gb|ACR81555.1| VtsA [Listonella anguillarum] Length = 384 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 121/341 (35%), Gaps = 53/341 (15%) Query: 1 MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFKVSQI---DVDRSVG 43 +AV+ GG E+E S S A+AL ++ F+ ++ D+ ++ Sbjct: 20 IAVIHGGD-KEQEGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDI--NLA 76 Query: 44 LVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101 L DL G G D + + LE+L +PY + + + +K K + Sbjct: 77 QCLKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIK 136 Query: 102 SCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + G+P P I + + +++KP+ G +S+ + + K + Sbjct: 137 AAGLPTAPFITIGIDEHFEDVAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFKRNDL 196 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-------------GVMGDASLDVTEIAVPKS 197 +++ G+ ++IE ++ G E V + Sbjct: 197 -AGVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQSEMPMAFSITERVLDA 255 Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 D + + L A + ++ + ++ +G + + R D D + Sbjct: 256 DEPIFTSMDVKPITQDRLVAVNEEGLRNQLALIGQKIYRLLGLQTLVRVDLRMDKEGN-L 314 Query: 258 FWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293 + LE N +P + VS+ A G + +L+ +V Sbjct: 315 YVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355 >gi|147781717|emb|CAN69740.1| hypothetical protein VITISV_017584 [Vitis vinifera] Length = 1204 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I D D + V VL +PD Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPXLVEQVLEKERPDAILP 169 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V +LE + + + A + D+ KQ + + GV PS + Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229 Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + + + Q+L+E Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 349 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 350 SVAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 405 Query: 290 LWM 292 + Sbjct: 406 AKL 408 >gi|294142076|ref|YP_003558054.1| carbamoyl-phosphate synthase large subunit [Shewanella violacea DSS12] gi|293328545|dbj|BAJ03276.1| carbamoyl-phosphate synthase, large subunit [Shewanella violacea DSS12] Length = 1072 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + + +L+ + + A + D+ R + + + G+ Sbjct: 89 TMGGQTALNCALELESKGVLKEFNVEMIGATADAIDKAEDRGRFDKAMKAIGLECPRAGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + Q + +LLI++ Sbjct: 149 AHTMAEAFAVQETLGFPCIIRPSFTMGGSGGGIAYNIEEFEEICTQGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ + S Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQKAIQRLEMKQPENETVTTVESAIISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + D+ ++ +G G Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSEDVQNRMREQVGKLAIELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|312144093|ref|YP_003995539.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp. 'sapolanicus'] gi|311904744|gb|ADQ15185.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp. 'sapolanicus'] Length = 1072 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + S+ +L KPD Sbjct: 29 SGSQACRALKEEGIEVVLVNSNPATIMTDENMADRVYIEPLTLESIIEILRKEKPDGLIP 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + + E+ T + A + + V Sbjct: 89 TLGGQIALNLAIDLAESKILDELDVELLGTPIKTIEKAEDRNTFKELMDQIGEPVLDSKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +++P G V + + ++ + Q+LIE+ Sbjct: 149 AENVEQAAEIAKKIGFPVIVRPAYTMGGTGGGVADNLEELKEITIRGFKHSLIGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + Y+ + Sbjct: 209 SIKGW-KEIEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDKEYQMFRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+G G + DP S + + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALGIEGGCNVQYALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVSA 323 Query: 291 WM 292 + Sbjct: 324 RI 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 32/294 (10%) Query: 21 ACASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 + SA L + G++ ++ V ++ + KP+ Sbjct: 579 SVHSAWSLHEEGYESIIVNNNPETVSTDFDTSDRLYFEPLTKEDVMHIIENEKPEGVIVQ 638 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 G + + E + I T + A D+ P + Sbjct: 639 FGGQTAINLAAKLADEGVNILGTSVDSIDLAEDRDRFIKLLNELDIPTPAGKTAASLLEA 698 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I P +++P + V+ ++ + + + + +LI++Y+ G E+ Sbjct: 699 EKIAAEIKYPVLVRPSYVLGGRAMEVVYNEKELEEYMKNAVKVSPDRPVLIDKYLTGTEV 758 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S + P + I ++++ + Q Sbjct: 759 EVDAISDGETVILPGIMEHVERAG---VHSGDSIAVYPPHNLSEKIKEKIEEYSIKISQK 815 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ ++ + KV+ +E+N + T P ++ G + +L Sbjct: 816 LNVEGVINIQYVVN--DNKVYVIEVNPRSSRT----IPYLSKVTGVAMVDLATK 863 >gi|163790401|ref|ZP_02184832.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7] gi|159874305|gb|EDP68378.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7] Length = 1059 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVSRILRKERPDAIVPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D R+ + VP + Sbjct: 90 LGGQTGLNMAMELANSGILEELDIELLGTKLSAIDQAEDRDLFRNLMNELNEPVPESAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + ++ + + + Q L+E Sbjct: 150 HTVSEAIVFAGKVGFPVIVRPAFTLGGTGGGICDNEEELTETVANGLKLSPVSQCLVEIS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + ++ ++ + Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENFDPVGVHTGDSIVFAPTQTLTDKEHQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 90/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVMHVIHLEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + + T L A + D + P+ + + Sbjct: 639 AINLAEPLTKMGVTLLGTRVEDLDRAENRDLFEQALNELNVPQPLGDTATTAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I+ P +++P G+ ++ + + + + +LI++Y+ G E+ + Sbjct: 699 RINYPVLVRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + + C G Sbjct: 759 CDGKSVLIPGIMEHIERSG---VHSGDSMAVYPPQSLSKEIQETIVDYTTRLALGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNVQFVIHEDT--VYVIEVNPRASRT----VPFLSKVTGIPMAQVATKAI 860 >gi|91226825|ref|ZP_01261478.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus 12G01] gi|254229693|ref|ZP_04923103.1| carbamoyl-phosphate synthase, large subunit [Vibrio sp. Ex25] gi|262395247|ref|YP_003287101.1| carbamoyl-phosphate synthase large chain [Vibrio sp. Ex25] gi|269967374|ref|ZP_06181434.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus 40B] gi|91188956|gb|EAS75240.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus 12G01] gi|151937814|gb|EDN56662.1| carbamoyl-phosphate synthase, large subunit [Vibrio sp. Ex25] gi|262338841|gb|ACY52636.1| carbamoyl-phosphate synthase large chain [Vibrio sp. Ex25] gi|269827962|gb|EEZ82236.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus 40B] Length = 1077 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.9 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTMEQAVEKSKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNDVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|84489992|ref|YP_448224.1| hypothetical protein Msp_1200 [Methanosphaera stadtmanae DSM 3091] gi|84373311|gb|ABC57581.1| CarB [Methanosphaera stadtmanae DSM 3091] Length = 1061 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 94/300 (31%), Gaps = 30/300 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L + + + D+D V ++ + D Sbjct: 29 SGSQACKSLREENIETILVNSNPATIQTDIDSADKVYVEPLTAEVVAKIIEKEQVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + L+ + + + + D + +P C ++ Sbjct: 89 TMGGQTGLNIAIDLNKMGALDGIRVLGSPIKTINDVEDRDLFAEFMERLNEPIPKCHAVN 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P +++P G + + + + +Q+LI++ V Sbjct: 149 SLEEAFEAVEDIGYPVIVRPAFTLGGTGGGIANNKKEFEEIVNHGLDMSFINQVLIDESV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + I V + ++ + + + + ++ + Sbjct: 209 LGWAEF-EYEVMRDKNDSCIIVCNMENIDPMGIHTGESIVVAPTQTLSDEDNQRLRNASI 267 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+G RG F P +++ +E+N P ++ S + GYS ++ + Sbjct: 268 KIIRALGIRGGCNIQFAVHPETKEYKVIEVN--PRVSRSS--ALASKATGYSIAKVSSKI 323 >gi|323442294|gb|EGA99924.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus O46] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|303256866|ref|ZP_07342880.1| carbamoyl-phosphate synthase, large subunit [Burkholderiales bacterium 1_1_47] gi|330998885|ref|ZP_08322612.1| carbamoyl-phosphate synthase, large subunit [Parasutterella excrementihominis YIT 11859] gi|302860357|gb|EFL83434.1| carbamoyl-phosphate synthase, large subunit [Burkholderiales bacterium 1_1_47] gi|329576099|gb|EGG57618.1| carbamoyl-phosphate synthase, large subunit [Parasutterella excrementihominis YIT 11859] Length = 1074 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPQTADVTYIEPITKEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE I + A + D+++ K+ + G+ S + Sbjct: 89 TMGGQTALNCAMELAKSGVLEKYNIELIGASPEAIEKAEDRLKFKEAMDKIGLSSARSGI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AYSLDDALKVQAKIGFPAIIRPSFTLGGSGGGIAYNMEEFIQICTRGLELSPTHELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVDTGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 89/283 (31%), Gaps = 32/283 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP+ G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIIDVEKPEGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + +A ++ + P + + Sbjct: 642 LKLARALEANGVNIIGTSPDSIDAAEDRERFQHLLQNLGLHQPPNRTARTEEEAIRLADE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + ++ + +L+++++D +E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMDIVHDRSELERYMREAIKVSFDSPVLLDRFLDDAVEMDVDAV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + +EV+R +A+ G Sbjct: 762 SDGKEVRIGGVMQHIEQAG---VHSGDSACSIPPYSLDPALVEEVKRQTREMARALNVVG 818 Query: 243 ISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + F ++F LE+N + T P ++ G Sbjct: 819 LMNVQFAIQHAFSDHPEIFVLEVNPRASRT----VPFVSKSTG 857 >gi|302332807|gb|ADL23000.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus JKD6159] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|283470413|emb|CAQ49624.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus ST398] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDEIATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|283770264|ref|ZP_06343156.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus H19] gi|283460411|gb|EFC07501.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus H19] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|258423754|ref|ZP_05686640.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9635] gi|282916452|ref|ZP_06324214.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus D139] gi|257845986|gb|EEV70014.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9635] gi|282319892|gb|EFB50240.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus D139] gi|298694496|gb|ADI97718.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus subsp. aureus ED133] gi|323440977|gb|EGA98684.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus O11] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|253731820|ref|ZP_04865985.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724419|gb|EES93148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|49486042|ref|YP_043263.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|57651772|ref|YP_186078.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus COL] gi|87160076|ref|YP_493793.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194909|ref|YP_499709.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221326|ref|YP_001332148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161509376|ref|YP_001575035.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141993|ref|ZP_03566486.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733559|ref|ZP_04867724.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus TCH130] gi|257425256|ref|ZP_05601681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427916|ref|ZP_05604314.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430549|ref|ZP_05606931.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257433310|ref|ZP_05609668.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus E1410] gi|257436152|ref|ZP_05612199.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M876] gi|258452500|ref|ZP_05700506.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A5948] gi|262048106|ref|ZP_06020993.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus D30] gi|262051838|ref|ZP_06024054.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus 930918-3] gi|282910775|ref|ZP_06318578.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913978|ref|ZP_06321765.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M899] gi|282918900|ref|ZP_06326635.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C427] gi|282919985|ref|ZP_06327714.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9765] gi|282924023|ref|ZP_06331699.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C101] gi|284024127|ref|ZP_06378525.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus 132] gi|293501011|ref|ZP_06666862.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509970|ref|ZP_06668678.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M809] gi|293526558|ref|ZP_06671243.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M1015] gi|294848196|ref|ZP_06788943.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754] gi|297208153|ref|ZP_06924584.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|304381234|ref|ZP_07363887.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60389608|sp|Q6GA10|CARB_STAAS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|81859599|sp|Q5HGM9|CARB_STAAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|122539724|sp|Q2FZ72|CARB_STAA8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|123486238|sp|Q2FHN5|CARB_STAA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|172048850|sp|A6QGA4|CARB_STAAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|189081835|sp|A8Z3P0|CARB_STAAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|49244485|emb|CAG42914.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285958|gb|AAW38052.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus COL] gi|87126050|gb|ABD20564.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202467|gb|ABD30277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374126|dbj|BAF67386.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus str. Newman] gi|160368185|gb|ABX29156.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728613|gb|EES97342.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus TCH130] gi|257271713|gb|EEV03851.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257274757|gb|EEV06244.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257278677|gb|EEV09296.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus 68-397] gi|257281403|gb|EEV11540.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus E1410] gi|257284434|gb|EEV14554.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M876] gi|257859718|gb|EEV82560.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A5948] gi|259160239|gb|EEW45267.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus 930918-3] gi|259163672|gb|EEW48227.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus D30] gi|269940695|emb|CBI49076.1| putative carbamoyl-phosphate synthase,pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus TW20] gi|282313995|gb|EFB44387.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C101] gi|282316710|gb|EFB47084.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C427] gi|282322046|gb|EFB52370.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M899] gi|282325380|gb|EFB55689.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282594701|gb|EFB99685.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9765] gi|290920630|gb|EFD97693.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096016|gb|EFE26277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466914|gb|EFF09432.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus M809] gi|294824996|gb|EFG41418.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754] gi|296887396|gb|EFH26298.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|302751025|gb|ADL65202.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340217|gb|EFM06158.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438420|gb|ADQ77491.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus TCH60] gi|315198440|gb|EFU28769.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140982|gb|EFW32829.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144303|gb|EFW36069.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|329313871|gb|AEB88284.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus T0131] gi|329724741|gb|EGG61246.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 21189] gi|329728758|gb|EGG65179.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 21193] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|49483366|ref|YP_040590.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|282903756|ref|ZP_06311644.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C160] gi|282905520|ref|ZP_06313375.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908496|ref|ZP_06316326.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|283957944|ref|ZP_06375395.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295427688|ref|ZP_06820320.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591353|ref|ZP_06949991.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus MN8] gi|60389633|sp|Q6GHN2|CARB_STAAR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|49241495|emb|CAG40181.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Staphylococcus aureus subsp. aureus MRSA252] gi|282327558|gb|EFB57841.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330812|gb|EFB60326.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282595374|gb|EFC00338.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus C160] gi|283790093|gb|EFC28910.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|295128046|gb|EFG57680.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576239|gb|EFH94955.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus MN8] gi|315194089|gb|EFU24482.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus CGS00] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHNFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|21282815|ref|NP_645903.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus MW2] gi|300912233|ref|ZP_07129676.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus TCH70] gi|22095489|sp|P58940|CARB_STAAW RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|21204253|dbj|BAB94951.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus MW2] gi|300886479|gb|EFK81681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + I G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGINIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|15924193|ref|NP_371727.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus Mu50] gi|15926786|ref|NP_374319.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus N315] gi|148267694|ref|YP_001246637.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus JH9] gi|150393752|ref|YP_001316427.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus JH1] gi|156979524|ref|YP_001441783.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus Mu3] gi|253315561|ref|ZP_04838774.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005990|ref|ZP_05144591.2| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795741|ref|ZP_05644720.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9781] gi|258415965|ref|ZP_05682235.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus A9763] gi|258419712|ref|ZP_05682679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9719] gi|258438754|ref|ZP_05689907.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A9299] gi|258444540|ref|ZP_05692869.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A8115] gi|258447627|ref|ZP_05695771.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A6300] gi|258449469|ref|ZP_05697572.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A6224] gi|258454848|ref|ZP_05702812.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A5937] gi|269202817|ref|YP_003282086.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus ED98] gi|282892689|ref|ZP_06300924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A8117] gi|282927543|ref|ZP_06335159.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A10102] gi|295407141|ref|ZP_06816942.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819] gi|296275224|ref|ZP_06857731.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus MR1] gi|297245973|ref|ZP_06929832.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796] gi|54036831|sp|P63740|CARB_STAAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|54040879|sp|P63739|CARB_STAAM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|167006449|sp|A7X1F4|CARB_STAA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|189081833|sp|A6U122|CARB_STAA2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|189081834|sp|A5IS88|CARB_STAA9 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|13701002|dbj|BAB42298.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus N315] gi|14246973|dbj|BAB57365.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus Mu50] gi|147740763|gb|ABQ49061.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946204|gb|ABR52140.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721659|dbj|BAF78076.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus subsp. aureus Mu3] gi|257789713|gb|EEV28053.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9781] gi|257839301|gb|EEV63775.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus A9763] gi|257844297|gb|EEV68679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A9719] gi|257848013|gb|EEV72006.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A9299] gi|257850033|gb|EEV73986.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A8115] gi|257853818|gb|EEV76777.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A6300] gi|257857457|gb|EEV80355.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A6224] gi|257863231|gb|EEV85995.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus A5937] gi|262075107|gb|ACY11080.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus ED98] gi|282590546|gb|EFB95623.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A10102] gi|282764686|gb|EFC04811.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus A8117] gi|285816885|gb|ADC37372.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus 04-02981] gi|294967994|gb|EFG44022.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819] gi|297177137|gb|EFH36391.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796] gi|312829596|emb|CBX34438.1| carbamoyl-phosphate synthase pyrimidine-specific large chain (Carbamoyl-phosphate synthetase ammonia chain) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130994|gb|EFT86978.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329727466|gb|EGG63922.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +L+ + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ KP G Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P S + + Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKSATSPEEALANAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853 >gi|258645189|ref|ZP_05732658.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM 15470] gi|260402538|gb|EEW96085.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM 15470] Length = 1067 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 87/258 (33%), Gaps = 16/258 (6%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KP+ G + + I + + + A ++ + Sbjct: 615 EDVLEIIEKEKPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + M+ + P +++P + ++ + L ++ Sbjct: 675 QLGIARPKGCLVESVEEAMEKTQDLDYPLIVRPSYVLGGRAMQIVYDQAELRQYLKEAVV 734 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +H +LI+QY+ G E+ + D + + + +S + P + Sbjct: 735 ASHEHPVLIDQYMVGREVEVDAISDGIDVCIPGIMEQIERSG---VHSGDSIAVYPPQHL 791 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + + + +A+ +G+ F+ + KV+ +E+N + T P M+ Sbjct: 792 TQETIETLTDYTRKIARAMNVKGLINIQFIV--VGNKVYVIEVNPRASRT----VPFMSK 845 Query: 280 YAGYSFRELLLWMVEDAS 297 G + MVE A+ Sbjct: 846 ITGIN-------MVEHAT 856 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V + DVD V V+ +PD Sbjct: 29 GTQACRSLKEEGIEVVLVNSNPSTIMTDVDIADRVYIEPITLPFVTEVIKKERPDALLAT 88 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V LE + S + A + D+ + VP Sbjct: 89 LGGQVGLNMAVDLSEAGVLEKYGVELLGSSLHAIKHAEDRELFKRAMNEIHQPVPESGIF 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +I+P G + + + + +Q+L+E+ Sbjct: 149 DELEPAVTFADKIGYPVIIRPAYTLGGTGGGIAHDRYEMEEISNRGIKLSPINQILVERS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G I V + ++ + + Y+ ++ + Sbjct: 209 VAGW-KEVEFEVMRDSADNCIIVCAMENIDPVGVHTGDSIVVAPTQTLTDGQYQMLRTAS 267 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G + D + + +E+N P ++ S + GY ++ Sbjct: 268 LDIIRYLQIEGGCNVQYALDTKTNNYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 323 Query: 292 M 292 + Sbjct: 324 I 324 >gi|56460088|ref|YP_155369.1| carbamoyl phosphate synthase large subunit [Idiomarina loihiensis L2TR] gi|56179098|gb|AAV81820.1| Carbamoylphosphate synthase large subunit [Idiomarina loihiensis L2TR] Length = 1074 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAVLP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G D +E+ ++ + A + D+ P Sbjct: 89 TMGGQTALNCALDLDRHGVLERYKVEMIGANADAIDKAENRDRFDKAMKAIGLETPNAEM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSLDEAFDVLSRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQLMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVNPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + ++ P ++ + Sbjct: 647 LKLARELEANGVPIIGTSPDAIDRAEDRARFQTAVRRLGLKQPENSTVTGFNEALTEAKR 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + L + ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLQRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + P + I +++ + G Sbjct: 767 CDGTDVLIGGIMQHIEEAG---VHSGDSACSLPPYSLSDIIQAQLREQMRKLAFELNVNG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNAQFAV--KEDEIYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|85712941|ref|ZP_01043981.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica OS145] gi|85693247|gb|EAQ31205.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica OS145] Length = 1074 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAILP 88 Query: 57 VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G D +E+ ++ + A + D+ P Sbjct: 89 TMGGQTALNCALDLDRHGVLDRFKVEMIGANADAIDKAENRDRFDKAMKKIGLETPNAEM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAFDVLDRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQLMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGLNPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEQPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + ++ ++ P ++ + Sbjct: 647 LKLARALEANGVPIIGTSPDAIDRSEDRERFQAAVNRLKLKQPENSTVTGISEALTEAKR 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + L + ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLTRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + I +++ + +G Sbjct: 767 CDGEDVLIGGIMQHIEEAG---VHSGDSACSLPPYSLSDIIQAQLREQIRKLAFELNVKG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNAQFAV--KDDEIYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866 >gi|58201633|gb|AAW66893.1| vancomycin resistance protein C1 [Enterococcus gallinarum] Length = 235 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 11/219 (5%) Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107 PD+ F VLHG +GEDG +Q +LEL+ +PY + ASAL M+K Q+ + G+ Sbjct: 20 PDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPT 79 Query: 108 ---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 P IKP + GSS GI + ++ L ++++ +G Sbjct: 80 LLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHSAL--TTAFAYGS 137 Query: 165 QLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 +LI++ + GIE+ CG+ ++ + F+ +E KY +++T +PA +PL Sbjct: 138 TVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATITVPAPLPLA 197 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 + +++ A L ++ +G G++R DF ++ E Sbjct: 198 LESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIYLNE 235 >gi|284925554|gb|ADC27906.1| carbamoyl-phosphate synthase large subunit [Campylobacter jejuni subsp. jejuni IA3902] Length = 1089 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----IPFVSKATGIPLAKVATR 868 >gi|307153024|ref|YP_003888408.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. PCC 7822] gi|306983252|gb|ADN15133.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC 7822] Length = 1082 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V VLA +PD Sbjct: 29 SGTQACKALREEGYEVVLINSNPASIMTDPEMANRTYIEPLTPEMVEKVLAKERPDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ + + + A ++ D++ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + + Q+L+E Sbjct: 149 ASTLEEAKAIAVQIGSYPLIIRPAFTLGGTGGGISYNQEEFEVMAQYGLDCSPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ V +E+N P ++ S + G+ + Sbjct: 269 SKAIIREIGVETGGSNIQFAVNPVDGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 37.9 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 33/293 (11%), Positives = 80/293 (27%), Gaps = 36/293 (12%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF- 62 AL GF+ ++ V ++ P+ G Sbjct: 587 ALSAEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPEGVIVQFGGQTP 646 Query: 63 -------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 + +I T + A ++ + P Sbjct: 647 LKLAVPLQKYLDSPDCPVKTKIWGTSPDSIDIAEDRERFEKILWELNITQPPNGIARSYD 706 Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + I P V++P + ++ DQ + + + +LI+++++ Sbjct: 707 EALAVAKRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN- 765 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + V A I + +S ++ V + + + ++ Sbjct: 766 AIEVDVDTLADATGKSIIGGIMEHIEEAGVHSGDSACSVPFTTLTPTVLETIRNWTSQLA 825 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 Q + G+ + +V+ LE N + T P ++ G ++ Sbjct: 826 QVLKVVGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872 >gi|86149694|ref|ZP_01067924.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839962|gb|EAQ57221.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 1089 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----IPFVSKATGIPLAKVATR 868 >gi|302871664|ref|YP_003840300.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574523|gb|ADL42314.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1077 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNSVKILGTSMESIDAAEDRDKFLNLLKDLNIPYPPGGAAYSLEDAIKVAEK 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIVDYTIKLARALRVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ KP Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKEKPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|42057|emb|CAA36869.1| ddl protein (partial) (AA 1-41) [Escherichia coli] Length = 41 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 25/37 (67%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37 +AVL+GG S+EREVSL+SG A + L + G +D Sbjct: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD 41 >gi|302671038|ref|YP_003830998.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio proteoclasticus B316] gi|302395511|gb|ADL34416.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio proteoclasticus B316] Length = 1082 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + V V+ +PD Sbjct: 29 SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADKTYIEPLNVERVAAVIEKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + IL+ + + A D+ K+ + G+ + S Sbjct: 89 NLGGQSGLNLCSELYKAGILDKFNVKVIGVQVDAIERGEDRTEFKKTMDMLGIEMARSKA 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 CYSIEEALAEADELGYPVVLRPAYTMGGAGGGLVYNKEELQTVCARGLQASIIHQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I D+ KE+QR Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVDP-VGVHTGDSFCTAPMLTISEDLQKELQRQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A+ + IG G + F DP+S +V +EIN + T S + G+ Sbjct: 268 AYKIVEHIGVIGGTNVQFAHDPVSGRVIVIEINPR---TSRSS-ALASKATGFPIA 319 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + +P G Sbjct: 587 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLQIYRKEQPLGVIAQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + E + I T ++ A D+ R + + Sbjct: 647 LNLAAKLKEEGVNILGTTPEVIDLAEDRDQFRMMMEKLGIPMAEAGMASDVEEAKEIAAR 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ +++ + + + + +LI++++ Sbjct: 707 IGYPVMVRPSFVLGGRGMEIVRSKEQMEEYMRAAVGVTPDRPILIDRFL---HNALECEA 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D VP + S +S ++P+K D + K ++ + G Sbjct: 764 DAISDGEHAFVPAVMEHIELAGIHSGDSACIIPSKHISDKHLKTIEEYTRKIAVEMNVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + V+ LE N + T P ++ G L ++ Sbjct: 824 LMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCGIRMVPLATDII 868 >gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, large subunit [Herminiimonas arsenicoxydans] gi|133738298|emb|CAL61343.1| carbamoyl phosphate synthase, large subunit (Carbamoyl-phosphate synthetase ammonia chain) [Herminiimonas arsenicoxydans] Length = 1076 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHHNGVLTKYGCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + + +LLIE+ Sbjct: 149 AHTLEESWAVQKELGFPSIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPEDGRMIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 94/295 (31%), Gaps = 35/295 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A KP G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPYGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 642 LKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLNDLGLRQPPNRTARTEEDALRLAQE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ +H +L++++ D IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + E++R L + + G Sbjct: 762 SDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQETINELKRQTSLMAKGLNVIG 818 Query: 243 ISRSDFLFDPL--SRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F K VF LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRT----VPYVSKATGLQLAKIAAR 869 >gi|167522361|ref|XP_001745518.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775867|gb|EDQ89489.1| predicted protein [Monosiga brevicollis MX1] Length = 806 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%) Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257 ++ + PA++ + +++ + L R R DF F ++ Sbjct: 694 YESKWDPESPYWTDVQYKPAEVSAEHRRQLHQQCALLFNRFELRDFGRFDFRFSKRTQTF 753 Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE+N PG MA AG ++ +++ ++ A Sbjct: 754 KLLEVNPNPGWCHDGKAALMAQMAGLNYADMIQRIILAA 792 >gi|326390047|ref|ZP_08211609.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993912|gb|EGD52342.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1072 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A KPD Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKEKPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEDGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + + ++I T + Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNGVKILGTSHESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D + P +++P + + Sbjct: 663 ISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q I + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P M+ G +L Sbjct: 837 ASRT----VPIMSKATGIPMVKL 855 >gi|218442117|ref|YP_002380446.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC 7424] gi|218174845|gb|ACK73578.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC 7424] Length = 1082 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLINSNPASIMTDPEMADRTYIEPLTPEMVEKVIAKERPDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ + + + A ++ D++ K ++ GVPVCPS + Sbjct: 89 TMGGQTALNLAVSLAKNGALDRYNVELIGAKLPAIEMAEDRLLFKDAMARIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + + Q+L+E Sbjct: 149 ASNLDQAKAIALEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEVMAQYGLDCSPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ + Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPVDGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 42.2 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 77/293 (26%), Gaps = 36/293 (12%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ ++ V ++ P+ G Sbjct: 587 ALSDEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEQENPEGVIIQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----- 118 V L + ++ + I + Sbjct: 647 LKLAVPLQKYLESPNCPVQTKIWGTSPDSIDIAEDRERFEKILSQLKITQPPNGIARSFD 706 Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P V++P + ++ DQ + + + +LI+++++ Sbjct: 707 ESLIIARRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN- 765 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + V A I + +S ++ + + + + ++ Sbjct: 766 AIEVDVDTLADTSGKSIIGGIMEHIEEAGVHSGDSACSIPYSSLTPAVLDTIRTWTSQLA 825 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + G+ + +V+ LE N + T P ++ G ++ Sbjct: 826 NVLKVVGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGVPLAKI 872 >gi|479086|emb|CAA55651.1| vanA2 [Oerskovia turbata] Length = 261 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 10/217 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 48 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 107 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P KP + GSS G+ + + + S+ + ++LIEQ Sbjct: 108 VINKDDRPVAATSTYPVFGKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 165 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224 V G E+ C V+G+++ V Y + + +PA + + Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 +Q ++A+GCRG++R D + ++ E Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFL-QDNGRIVLNE 261 >gi|257459192|ref|ZP_05624311.1| carbamoyl-phosphate synthase, large subunit [Campylobacter gracilis RM3268] gi|257443577|gb|EEV18701.1| carbamoyl-phosphate synthase, large subunit [Campylobacter gracilis RM3268] Length = 1087 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V I D D S+ ++ D Sbjct: 29 SGTQAAKTLKSLGYRVVLINSNPATIMTDPDFADATYIEPITKESILRIIKREGVDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +QA L ++ + + K + + +P Sbjct: 89 TMGGQVALNVAMQAYESGELAGVKFLGANPEAIKKGEDRVKFKEAMIKIGMDLPKSKYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M + + I P +I+ G V + +++LIE+ + Sbjct: 149 NIEEAMAAANEIGFPLIIRASYTLGGAGSGVAYNIDEFKEVAQNGLDVSPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEFEMEVIRDHKDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAVNPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 89/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD ++H + L + + ++ D Sbjct: 616 FEPIDF-EHVRAVIEAENPDGV--IVHFGGQTPLKLAKRLSTVGAKIIGTSARTIDVAED 672 Query: 93 KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + + + GV + + ++ I P +++P + + + + Sbjct: 673 RKKFSEFIVNIGVKQPKNDTAVSEAEAIEKAAAIGYPVLVRPSYVLGGRAMRRVHSEAEL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ S +H +LI++++ D EL + D + + Sbjct: 733 RLYMSEAVSVSHHSPVLIDKFLLDATELDVDAICDGRDVYIGAIMEHIEEAGIHSG---D 789 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +++ + P + ++ V R +G G+ F +++ +E+N + T Sbjct: 790 SASILPPLSLSAEMIDLVSRQTKEIALNLGVVGLMNIQFAIFE--NELYIIEVNPRASRT 847 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ----VPFVSKATGIPMAKVATR 865 >gi|225572646|ref|ZP_03781401.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM 10507] gi|225040000|gb|EEG50246.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM 10507] Length = 1106 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 106/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV + ++A +PD Sbjct: 63 SGTQACKALRQLGYEIVLVNSNPATIMTDPGIADVTYIEPLNVERLEEIIAKERPDAILP 122 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + IL+ ++ + A D++ K ++S G+ + S Sbjct: 123 NLGGQSGLNLCSELSKMGILDKYQVKVIGVQVDAIERGEDRIEFKNTMNSLGIEMARSEV 182 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 183 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 242 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + S + + ++ + I ++ KE+QR Sbjct: 243 SILGWEELELEVVRDSKNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKELQRQ 301 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +AI G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 302 AYKIVEAIEVIGGTNVQFAHDPVSGRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 356 Query: 291 WMV 293 M+ Sbjct: 357 AML 359 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ AGF+ + D D V + KP G Sbjct: 615 ALKKAGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 674 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R+ +P + + Sbjct: 675 LNLSADLEKYGVKILGTPPAVIDMAEDRDLFRAMMDKLEIPMPEAGMAVNVEEALQIAEK 734 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ + +S+ + + +LI++++ Sbjct: 735 IGYPVMVRPSYVLGGRGMEVVYEPESMKAYMAAAVGVTPDRPILIDRFLR---HAMECEA 791 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P+ + K ++ + + RG Sbjct: 792 DAISDGTHAYVPAVMEHIELAGVHSGDSACIIPSANISEENLKTIKEYTKKIAEEMHVRG 851 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + KV+ LE N + T P ++ S L ++ Sbjct: 852 LMNMQYAI--EDGKVYVLEANPRASRT----VPLVSKVCNISMVPLATQII 896 >gi|220931137|ref|YP_002508045.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii H 168] gi|254813598|sp|B8D1H3|CARB_HALOH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|219992447|gb|ACL69050.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii H 168] Length = 1067 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 103/302 (34%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFN 56 SG AL++ G +V + D+ V L ++ KPD Sbjct: 29 SGTQACKALKEEGLEVVLVNSNPATIMTDTDIADQVYLEPLTFDYITRIIEKEKPDGLLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + V+ +L+ + + + A + D+ ++++ G P S Sbjct: 89 TLGGQTGLNLAVELAEKGVLDKFGVTLLGTNLEAIQKAEDRNLFRELLDDIGEPFIESKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + + I P +++P G + + + + + + +Q+LIE+ Sbjct: 149 VDNLKEAVQTAQQIGFPVIVRPAYTLGGSGGGIAENVEELKEIVTLGLKRSRINQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + ++ + + Y ++ Sbjct: 209 SLYGWKELEYEVIRDGNDNCITICNMENIDP-VGIHTGDSIVVAPSQTLSDKEYHLLRMA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G F DP + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALGIEGGCNIQFALDPEGLDYYVIEVN--PRVSRSS--ALASKATGYPIAQVSA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 32/290 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S A AL+D + + D D S L L + NV Sbjct: 575 SVHAV-RALQDRNVEAIIVNNNPETVSTDFDTSDKLYFEPLTTEYVLNVAEREGITDVIL 633 Query: 60 ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + T + + P ++ Sbjct: 634 QFGGQTAINLAEPLSEAGMNVLGTGLKSINLTEDRKQFNQVLTSEKIPTPPGYTVFSIEE 693 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + H I P +++P G+ ++ + + L + +LI++Y+ G E Sbjct: 694 ALKLSHKIGYPVLVRPSYVLGGRGMEIVSNEAELKTYLTDAVKITPEHPVLIDRYIPGRE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235 + + D + + P + S +S + PA+ + + Sbjct: 754 IEVDAISDGNDVLI----PGIMEHVERAGVHSGDSMAIYPARNLTTKQTRRLVNYTKKIC 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 G +GI F+ D + + LE+N + T P ++ G Sbjct: 810 NLFGIKGIINIQFVLD-RDGQFYVLEVNPRASRT----VPILSKVTGIPM 854 >gi|312795592|ref|YP_004028514.1| Carbamoyl-phosphate synthase large chain [Burkholderia rhizoxinica HKI 454] gi|312167367|emb|CBW74370.1| Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) [Burkholderia rhizoxinica HKI 454] Length = 795 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D D V ++A +PD Sbjct: 66 SGAQACKALREEGYKVILVNSNPATIMTDPDTADVTYIEPITWEVVETIIAKERPDAILP 125 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G +A+ + R K + + + + Sbjct: 126 TMGGQTALNCALDLHRHGVLDKYGVELIGASPAAIDKAEDRQKFKEAMDQIGLGSAKSGI 185 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + + P VI+P G + + + Sbjct: 186 AHSWEEALKVQAEIAQATGGAGYPVVIRPSFTLGGSGGGIAYNRVEFEEICKRGLDLSPT 245 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 246 RELLIEESLLGWKEFEMEVVRDRHDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 305 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 306 QLMRDASLAVLREIGVDTGGSNVQFAINPRDGRMIVIEMN--PRVSRSS--ALASKATGF 361 Query: 284 SFRELLLWM 292 ++ + Sbjct: 362 PIAKVAAKL 370 >gi|307264947|ref|ZP_07546508.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919932|gb|EFN50145.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1072 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A KPD Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKEKPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVRLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 268 GIKIIKALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 17/275 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + + ++I T + Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNGVKILGTSHESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D + P +++P + + Sbjct: 663 ISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q I + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T P M+ G +L VE A R Sbjct: 837 ASRT----VPIMSKATGIPMVKLA---VEVALGKR 864 >gi|156973232|ref|YP_001444139.1| carbamoyl phosphate synthase large subunit [Vibrio harveyi ATCC BAA-1116] gi|156524826|gb|ABU69912.1| hypothetical protein VIBHAR_00913 [Vibrio harveyi ATCC BAA-1116] Length = 1077 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++ + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRAILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 44.5 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L++ ++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + + F + +V+ +E+N + T P ++ G Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857 >gi|58038797|ref|YP_190761.1| carbamoyl phosphate synthase large subunit [Gluconobacter oxydans 621H] gi|58001211|gb|AAW60105.1| Carbamoyl-phosphate synthase large chain [Gluconobacter oxydans 621H] Length = 1084 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V I+ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILINSNPATIMTDPGLADATYIEPITPEFVERIILKEKPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + + D+ + ++ + G+ S + Sbjct: 89 TMGGQTALNAAMALDKSGFLKKHNVELIGADAEVIDRAEDRQKFREAMDEIGIESPRSTI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + + ++LIE+ Sbjct: 149 AHTLEEARAALADVGLPAIIRPSFTMGGAGGGIAYNREEFDQIVTGGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVETGGSNVQFGVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 44/327 (13%), Positives = 91/327 (27%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETVMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + ++ G + + T + + Sbjct: 616 RLYFEPLTAEDVIALIRTEAKGGKVLGCIVQYGGQTPLKLSRALEEAGIPLLGTPADAID 675 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + P V +P + ++ Sbjct: 676 RAEDRERFQAMLRKLGLRQPRNGIARSPAEAEKIAEEVGYPVVARPSYVLGGRAMEIVYD 735 Query: 147 DQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + L + + G LL D IE + D + + Sbjct: 736 KPGLKRYLNEVLRAAGPEVSTGPVLLDHYLNDAIEADVDCICDGENVYVAGVMEHIEEAG 795 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + + E++ + +G RG+ + ++VF LE Sbjct: 796 IHSG---DSACSLPPYTLSPALGTELRSQTEAMARELGIRGLMNVQYAI--KDQEVFVLE 850 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873 >gi|332306410|ref|YP_004434261.1| carbamoyl-phosphate synthase, large subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173739|gb|AEE22993.1| carbamoyl-phosphate synthase, large subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1072 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R + + S G+ + + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFNVEMIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D I P +I+P G + + + + +LLI++ Sbjct: 149 AHSLDEAFDVSTRIGFPCIIRPSFTMGGSGGGIAYNVEEFEEICRRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVDPQTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPVGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P ++ + Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDAIDKAEDRERFQKMVNKLNLKQPANATVSNLEEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I P V++P + ++ + + L + ++ +L+++++D IE+ Sbjct: 702 LAAEKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNNAVKVSNDSPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + DI ++ Sbjct: 762 DVDAICDGKEVMIGGIMEHIEQAG---VHSGDSACSLPPYSLSNDIQDVMREQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F +V+ +E+N + T P ++ G ++ Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGLPIAKI 863 >gi|256823599|ref|YP_003147562.1| carbamoyl-phosphate synthase large subunit [Kangiella koreensis DSM 16069] gi|256797138|gb|ACV27794.1| carbamoyl-phosphate synthase, large subunit [Kangiella koreensis DSM 16069] Length = 1074 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GF+V + D + V ++ KPD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPNMADVTYIEPIHWEVVAKIIEKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + +LE+ + + A + D+ + +S G+ + Sbjct: 89 TMGGQTALNCALDLASRGVLEIHGVEMIGATREAIDKAEDRELFAKAMSKIGLDQPRQQV 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + L+ + ++LLI++ Sbjct: 149 AHSLEDAWKVQKEVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICLRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFAINPENGRMTIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ D G++ + D D V ++ KP G Sbjct: 587 AMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVDIEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQRAINRLGLLQPPNRTARNMEEGVRLAEE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ ++ + + + S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNEEELRRYMNDAVSVSNESPVLLDRFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + ++ E++R + + + RG Sbjct: 767 FDGKNILIGGIMEHIEQAG---VHSGDSACSIPPFSLSKEVQDELRRQMLVMAKELKVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + F ++F LE+N + T P ++ G ++ Sbjct: 824 LMNAQFAI--QGERIFILEVNPRASRT----VPFVSKATGTPMAKV 863 >gi|222151022|ref|YP_002560176.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus JCSC5402] gi|254813600|sp|B9EB69|CARB_MACCJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|222120145|dbj|BAH17480.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus JCSC5402] Length = 1057 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYIEPLTLDFVSRIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ + + T + A D R+ + VP + Sbjct: 90 LGGQTGLNMAVQLHEAGILEENNVTLLGTKLSSIEQAEDRDLFRNLMNELNEPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D I P +++P G + ++ + + ++ Q LIE+ Sbjct: 150 NTVQQAIDFATSIGYPVIVRPAFTMGGTGGGICHDEKELVEIVTNGLKYSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDKEYHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 90/279 (32%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ +AG++ I+ + V ++ +P+ G Sbjct: 580 AIREAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + +++ T L A + + P+ + + + Sbjct: 640 INLAEKLTKYGVKVLGTSLENLDRAEDRKEFEALMQRIEIPQPLGKTATSVEEAVANADF 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + Q+ + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNEEELINYMTQAVKASPEHPVLIDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + ++ + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTEKQIATLEDYTKRLAHGLEIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ + +VF LE+N P ++ ++ P Sbjct: 817 LNIQYVI--SNDEVFVLEVNPRASRTVPFLSKITDVPMA 853 >gi|222056353|ref|YP_002538715.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32] gi|221565642|gb|ACM21614.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32] Length = 1080 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYIEPVTPEILAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V +L+ + + + A + D+ KQ + G+ V S Sbjct: 89 TLGGQTALNTAVAVAENGVLDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLAVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 N M+ I P +I+P G + + + D++L+E+ Sbjct: 149 AHNNAEAMEIIREIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSATGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPKNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------HGNFG 63 AL DAG++ + D D S L L + N++ G Sbjct: 596 ALADAGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLNIVQLEKPVGVIVQFGGQTP 655 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + Sbjct: 656 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADR 715 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 716 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDAL 775 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I I E++R L + RG Sbjct: 776 CDGTEAVIGGIMEHIEEAGIHSG---DSACSLPPYSISRAITDEIRRQTKLMALELNVRG 832 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + ++ LE+N + T P ++ G +L + Sbjct: 833 LMNVQYAI--KGGVIYILEVNPRASRTA----PFVSKATGRPLAKLAALI 876 >gi|78222983|ref|YP_384730.1| carbamoyl-phosphate synthase large subunit [Geobacter metallireducens GS-15] gi|78194238|gb|ABB32005.1| carbamoyl-phosphate synthase large subunit [Geobacter metallireducens GS-15] Length = 1081 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPDVLAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V LE + + + A + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M+ + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYTEAMEVIKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMGGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 597 ALGEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLSIVDLEKPQGVIVQFGGQTP 656 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + + P + + + Sbjct: 657 LKLSVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANR 716 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +++ + + + +LI++++D IE+ + Sbjct: 717 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDAL 776 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I ++ +E++R + + +G Sbjct: 777 CDGTEVVIGGIMEHIEEAGIHSG---DSACCLPPHSISPELVEEIRRQTTVMALELNVKG 833 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + ++ LE+N + T P ++ G ++ + Sbjct: 834 LMNVQYAI--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAARI 877 >gi|157838095|pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis gi|157838096|pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis gi|157838097|pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis gi|157838098|pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++ + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|5821976|pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp gi|5821978|pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp gi|5821980|pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp gi|5821982|pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp gi|22219401|pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase gi|22219403|pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase gi|22219405|pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase gi|22219407|pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 1073 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + Q +LE + + A + D+ R + G+ S Sbjct: 89 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLI++ Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + S ++ +L++ ++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ +E+N + T P ++ G ++ Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867 >gi|305432825|ref|ZP_07401983.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli JV20] gi|304443979|gb|EFM36634.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli JV20] Length = 1095 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 35 SGTQAAKTLKEQGYRVVLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILP 94 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + + Sbjct: 95 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAY 154 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGTGSGVVYNMDEFKELANTALALSPIHEILIEESL 214 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 215 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFA 274 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 275 ILREIGVDTGGSNVQFAVNPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 625 FEPIDF-EHLRGVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 681 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 682 RKKFAEFITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVTDESEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+QY+D E+ + D + + Sbjct: 742 RLYMQEAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSG---D 798 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + +++ + +G G+ F + +++ +E+N + T Sbjct: 799 SACSLPPCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAI--YNNELYMIEVNPRASRT 856 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 857 ----VPFVSKATGIPLAKVATR 874 >gi|300113256|ref|YP_003759831.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus watsonii C-113] gi|299539193|gb|ADJ27510.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus watsonii C-113] Length = 1073 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G++V ++ + ++V ++ +PD Sbjct: 29 SGAQACKSLKEEGYRVILVNSNPATIMTDPGLADATYIEPLTWKTVARIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + ILE + + A + D+ +Q + G+ + S + Sbjct: 89 TMGGQTALNCALDLAREGILERYGVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P VI+P G + + + + +LLI++ Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPSSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICAIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPEDGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/289 (10%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V +++ +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIISLEQPQGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I T + A ++ + P + + Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQRLIEKLGLKQPPNRTARTQEEALRLAAE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ + + ++ S ++ +L+++++ + E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYTADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + ++ + + G Sbjct: 767 CDGGQVMVGGIMEHIEQAG---VHSGDSACALPPFSLNAAVQNRLREQVCNMARELKVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F + +++ LE+N + T P ++ G ++ Sbjct: 824 LMNTQFAI--QANEIYVLEVNPRASRT----VPFVSKTIGIPLAKIAAR 866 >gi|57168407|ref|ZP_00367541.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli RM2228] gi|57020215|gb|EAL56889.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli RM2228] Length = 1089 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKEQGYRVVLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + + Sbjct: 89 TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGTGSGVVYNMDEFKELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAVNPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + ++ D Sbjct: 619 FEPIDF-EHLRGVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + ++ G+ + + I P +++P + V+ + + Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVTDESEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+QY+D E+ + D + + Sbjct: 736 RLYMQEAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + +++ + +G G+ F + +++ +E+N + T Sbjct: 793 SACSLPPCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAI--YNNELYMIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|255318890|ref|ZP_05360116.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter radioresistens SK82] gi|262378855|ref|ZP_06072012.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter radioresistens SH164] gi|255304146|gb|EET83337.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter radioresistens SK82] gi|262300140|gb|EEY88052.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter radioresistens SH164] Length = 1076 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAAIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +LE + + A + D+ Q + G+ + + Sbjct: 89 TMGGQTALNCALALDANGVLEKYNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKAAI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ Q P +I+P G + + + + QLLI++ Sbjct: 149 AESMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEKPKGIIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + M Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ D+ + L + ++ +L+++++D IE+ Sbjct: 702 AEAAKVGYPLVVRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++ E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEVQDEMRRQTIAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNVQFAV--KGDDVYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|109898531|ref|YP_661786.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas atlantica T6c] gi|109700812|gb|ABG40732.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas atlantica T6c] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ R + + S G+ + + Sbjct: 89 TMGGQTALNCALDLDKHGVLTEFGVEMIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D I P +I+P G + + + + +LLI++ Sbjct: 149 AHSLDEAFDVSTRIGFPCIIRPSFTMGGSGGGIAYNVEEFEEICRRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVDPQTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPVGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P ++ + Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDAIDKAEDRERFQKMVNKLNLKQPANATVSNLEEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I P V++P + ++ + + L + ++ +L+++++D IE+ Sbjct: 702 LAAEKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNNAVKVSNDSPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + DI ++ Sbjct: 762 DVDAICDGKEVMIGGIMEHIEQAG---VHSGDSACSLPPYSLSEDIQNVMREQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F +V+ +E+N + T P ++ G + ++ Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGLAIAKI 863 >gi|329893939|ref|ZP_08269974.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium IMCC3088] gi|328923394|gb|EGG30711.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium IMCC3088] Length = 1073 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWETVSKIIEAERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + G+ + Sbjct: 89 TMGGQTALNCALDLDKHGVLKKFGVEMIGATKEAIDKAEDRQLFDDAMKRIGLETPRAAT 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L I P +I+P G + + ++ + +LLI++ Sbjct: 149 ARSMEHAFAILEDIGLPCIIRPSFTMGGSGGGIAYNREEFEEICIRGFDLSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + ++ Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEMQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGQDPKTGRFVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 105/322 (32%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39 + VL GG + G+ +AL + G++ + D D Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP+ G + + I T + A Sbjct: 614 RLFFEPVTIEDVIEIIDLEKPEGVIVQFGGQTPLKLARALEAKGVPIIGTTPDAIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ +++ I P V++P + ++ +++ + Sbjct: 674 RERFQHMIQKLGLKQPANTTVRSVDEALEAAASIGYPLVVRPSYVLGGRAMEIVFREEDL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + + +L++ ++ IE+ + D V + + +S Sbjct: 734 LRYMKNAVLVSDDSPVLLDSFLSAAIEVDIDAVSDGKTVVIGAIMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P +P+D+ E++ +G G+ + +++ +E+N + T Sbjct: 791 SACALPPYNLPMDVQDEMREQVKQMALELGVCGLMNVQLAW--QDNEIYVIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 849 ----VPFVSKCIGESLAKVAAR 866 >gi|325109260|ref|YP_004270328.1| carbamoyl-phosphate synthase large subunit [Planctomyces brasiliensis DSM 5305] gi|324969528|gb|ADY60306.1| carbamoyl-phosphate synthase large subunit [Planctomyces brasiliensis DSM 5305] Length = 1090 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ KPD Sbjct: 29 SGTQACKALRELGYEVVLVNSNPATIMTDPETADRTYIEPITWQYVEEIIRQEKPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 L G + L + G A ++ + R + + + + Sbjct: 89 TLGGQTGLNTAMELHKRGILEKHNVELIGARADVIAKAEERELFKDAMTAIGMDCARSAV 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 MD I P +I+ G + + + + + ++L+E+ Sbjct: 149 VRNMDQARAALDEIGLPLIIRASFTLGGTGGGIAYNREEFEGKVRKGLQLSPVGEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SMLGWKEYEMEVMRDKNDNCVIICAIENFDPMGVHTGDSLTVAPAQTLTDKEYQRMRDAT 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G + F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 FACIREIGVETGGANVQFAIHPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 91/286 (31%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 ALE+ G + + D D V + L+PD G Sbjct: 594 ALEELGIESIMVNSNPETVSTDYDTSDLLFFEPLTLEDVLNICDRLQPDGVIVQFGGQTP 653 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + +A ++ + + P + Sbjct: 654 LNLAKGLETAGVPIIGTSPDSIDAAEDRERFQEILTRAGLKQPPNGIAIDTEGARAQADR 713 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + + ++ ++ + ++ + +L++++ D IE+ + Sbjct: 714 IGYPVLVRPSYVLGGRAMQICYEETALLKYMTEAVDASPDHPVLVDKFLQDAIEVDVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + + +E++ + + RG Sbjct: 774 SDGETTIVGGIMEHIEEAGIHSG---DSACAIPPHSLSEETLEEIREATKALARELNVRG 830 Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + F + +V+ LE+N + T P ++ G S Sbjct: 831 LMNIQFAVKEIDGNFEVYVLEVNPRASRTS----PFVSKATGMSLA 872 >gi|308069855|ref|YP_003871460.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain (carbamoyl-phosphate synthetase ammonia chain) [Paenibacillus polymyxa E681] gi|305859134|gb|ADM70922.1| Carbamoyl-phosphate synthase, pyrimidine-specific, large chain (Carbamoyl-phosphate synthetase ammonia chain) [Paenibacillus polymyxa E681] Length = 1071 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEQAEDRDLFRDLMRELEQPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +++ + I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTLEESLEFANEIGYPIIVRPAYTLGGTGGGICSTEEELRETVSSGLRYSPIGQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDGNDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T+ + A K + P ++ + + Sbjct: 648 INLAAPLSAAGVNILGTNLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + + ++ N +LI++Y+ G E+ + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + ++ +++ + + + G+ Sbjct: 768 DGETVLVPGIMEHVERAG---VHSGDSIAVYPPQHLSAELKQKIVEITISIAKELKTIGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ L + Sbjct: 825 VNIQFVIHQ--DQVYVIEVNPRSSRT----VPFLSKVTNIPMANLATQAI 868 >gi|254427205|ref|ZP_05040912.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax sp. DG881] gi|196193374|gb|EDX88333.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax sp. DG881] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R + + + G+ S + Sbjct: 89 TMGGQTALNCALDLDHNGVLKEFGVEMIGATEDAIDKAEDRSRFDKAMKAIGLECPRSAI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + S + P +I+P G V + + + ++LLI++ Sbjct: 149 AHNMEEASAALEELGFPCIIRPSFTMGGSGGGVAYNREEFEEICQRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + ++ Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKELQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 91/266 (34%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A KP G + I T + Sbjct: 613 DRLYFEPITL---EDVLAIVAKEKPKGVIVQYGGQTPLKLARALQAAGVPIIGTPPDAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + I P V++P + ++ Sbjct: 670 EAEDRERFQQMVNKLGLKQPPNRTARSMEDGVRLAEEIGYPLVVRPSYVLGGRAMEIVYS 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + S ++ +L+++++D IE+ + D + V + + Sbjct: 730 EAELRNYMMNAVSVSNDSPVLLDRFLDDAIEVDVDAVCDGTDVVIGGIMQHIEQAG---V 786 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + D+ +++ A +G G+ F S +V+ LE+N + Sbjct: 787 HSGDSACSLPPYSLDDDVQDVMRQQAADMALELGVVGLMNVQFAV--KSGEVYVLEVNPR 844 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G S ++ Sbjct: 845 ASRT----VPYVSKCIGVSLAKVAAR 866 >gi|85858069|ref|YP_460271.1| carbamoyl phosphate synthase large subunit [Syntrophus aciditrophicus SB] gi|85721160|gb|ABC76103.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus SB] Length = 1066 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 106/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV +S+ ++ + KPD Sbjct: 29 SGTQACKALRKLGYEIILVNSNPATIMTDPGTADVTYIEPLNVQSMIEIIENEKPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + ILE + + A D++ K+ ++ G+ + S Sbjct: 89 NLGGQTGLNLTAELAKLGILEKYGVKVIGVQVDAIERGEDRIAFKETMTRLGIDMPKSEP 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G ++ + + + S + Q+LIE+ Sbjct: 149 AYTVEEAEKIASKLGYPVVVRPAYTMGGTGGGLVYNLEELRAVASRGISASRVGQILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + T + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDEKNQMITVCFIENVDAMGVHTGDSYCTAPM-LTISPELQERLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +AI G + F +P + +V +EIN + T S + G+ L+ Sbjct: 268 SYAIVEAIQVIGGTNIQFAHNPETGRVVIIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 SML 325 Score = 36.8 bits (83), Expect = 4.1, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ D G++ + D D V + KP+ G Sbjct: 580 AIRDEGYESIMVNCNPETVSTDYDTSNKLYFEPLTVEDVLSIYEKEKPEGVIAQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + A D+ R +P + + +D Sbjct: 640 LNIAGELEKAGVRIIGTSPETIDLAEDRDRFRKMMRKLGIPMPESGMAINLQEALDVAKR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ ++ + + + +LI+++++ Sbjct: 700 IGYPLMVRPSYVLGGRGMEVVHDEEMLKRYVAAAVGVTPERPILIDKFLEN---AIEAEA 756 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T+ VP + S +S + P I + + G G Sbjct: 757 DAISDGTDAFVPAVMEHIELAGIHSGDSACVIPPISIAPRHLETINEYTRTIAIEFGVVG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + + V+ LE N + T P ++ S Sbjct: 817 LMNIQYAI--ADDVVYILEANPRASRT----VPLVSKICNISMA 854 >gi|81428566|ref|YP_395566.1| carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus sakei subsp. sakei 23K] gi|123564265|sp|Q38X24|CARB_LACSS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|78610208|emb|CAI55257.1| Carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus sakei subsp. sakei 23K] Length = 1060 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 91/293 (31%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ ++ + V V+ KP+ G Sbjct: 577 CVQAIQKAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVVELEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A D + PV + + Sbjct: 637 QTAINLAAPLEENGVKILGTSVANLDRAEDRDLFDQLIQELNIPQPVGKTATNAPDALTI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +I+P + ++ + + + ++ + +LI++Y+ G E Sbjct: 697 ATEIGYPVLIRPSFVLGGRAMEIVHTPEDLTHYMQEAVKVSDEHPVLIDRYLMGKECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + D + A+ C Sbjct: 757 AICDGQEVLIPGIMEHIERAG---VHSGDSMAVYPPQNLTEDQKAAIIDYTTKLCLALDC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ + +V+ +E+N + T P ++ +L ++ Sbjct: 814 HGLLNIQFII--QNDEVYVIEVNPRASRT----VPFLSKVTQIPMAQLATQLI 860 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + V +L PD Sbjct: 29 SGTQACLALKEEGYQVVLINSNPATIMTDKTVADTVYIEPITLDFVTQILRKELPDAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A + ++ + +P Sbjct: 89 TLGGQTGLNMALELANCGILAELNIELLGTKLSAIDQAEDRELFKNLMNQLNEPIPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + + Q+L+EQ Sbjct: 149 AHSLDDAQEFVKQNGFPVIIRPAFTLGGTGGGIAENAGQLKTIVKNGIALSPVGQVLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDRNDNALVVCNMENFDPVGIHTGDSIVFAPVQTLSDREVQM-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + F +E+N P ++ S + GY ++ Sbjct: 268 SLKIIRALKIEGGCNVQLALDPNSERYFIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|302037857|ref|YP_003798179.1| carbamoyl-phosphate synthase large subunit [Candidatus Nitrospira defluvii] gi|300605921|emb|CBK42254.1| Carbamoyl-phosphate synthase, large subunit [Candidatus Nitrospira defluvii] Length = 1089 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I D D + V V+ +PD Sbjct: 29 SGTQACKALKEEGYRVILINSNPATIMTDPDFADRTYIEPITLDVVEKVIECERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + + +LE + + I A + D+ +Q + G+ V S Sbjct: 89 TMGGQTALNTAIGLAKRGVLEKYGVRLIGASIAAIHKAEDRDAFRQAMWKIGLRVPDSGV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G + + + S + Q+LIEQ Sbjct: 149 ATSLAEAERELERIRFPAIVRPSFTMGGTGGNIAYNIEEFRTQVEWGLSMSPVRQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I P + + + + Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICPIENLDPMGVHTGDSITVAPALTLTDKEYQMLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + F +P++ ++ +E+N P ++ S + G+ ++ Sbjct: 269 VRIIREIGVDTGGANIQFGLNPVNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 36.8 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 94/318 (29%), Gaps = 45/318 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL + + + D D S Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCVHAAMALREEQIETIMVNCNPETVSTDYDTSD 629 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + N++ G + + I T + A Sbjct: 630 RLYFEPLTEEDVLNIVEREQPMGVVLQFGGQTPLKLALSLSRAGVRILGTSPDAIDRAED 689 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + R + I+ P +++P + ++ + + Sbjct: 690 RARFRELLDKLGLRQAESGMAHSVEEALTIAAEITYPVMVRPSYVLGGRSMQIVYDEAGL 749 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + +LI++Y+ + S T + + +S + Sbjct: 750 LHYMNTAVKASEKHPVLIDKYL--RDAIEIDADAISDGTTVVVAGIMEHIEEAGVHSGDS 807 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + I +E++R +G G+ + F + ++ LE+N + T Sbjct: 808 ACSLPPYTLDATIIEEIRRQMTALALELGVIGLMNAQFAV--KDQTIYVLEVNPRGSRT- 864 Query: 271 VSIFPEMAAYAGYSFREL 288 P ++ G +L Sbjct: 865 ---VPFVSKAIGVPLAKL 879 >gi|162139870|ref|YP_746109.2| carbamoyl phosphate synthase large subunit [Granulibacter bethesdensis CGDNIH1] Length = 1092 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +Q LE + + + D+++ + + G+ S++ Sbjct: 89 TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P VI+P G + + + + ++LIE+ Sbjct: 149 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHTGDSVTVAPALTLTDREYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 52/321 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 570 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 622 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + I T + Sbjct: 623 RLYFEPLTAEDVINLIRREQQSGTVLGCIVQYGGQTPLKLSHALSRAGIPILGTSVDAID 682 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +A ++ ++ S P + I P VI+P + ++ Sbjct: 683 AAEDRERFQALLNGLSLLQPENGIARSAQEAEAITARIGYPVVIRPSYVLGGRAMEIVYD 742 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + + +LI++Y D IE+ + D + + Sbjct: 743 HAGLNRYMREAVRVSGDNPVLIDRYLNDAIEVDVDCIADGERVYVAGVMEHIEEAGIHSG 802 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEI 262 ++ + P + + E++ + + G+ F S +++ LE+ Sbjct: 803 ---DSACSLPPYSLSPALVDELRAQTEALARGLQVIGLMNVQFAIKREADGSDRIYVLEV 859 Query: 263 NVQPGMTPVSIFPEMAAYAGY 283 N + T P +A G Sbjct: 860 NPRASRT----VPFVAKATGV 876 >gi|114317126|gb|ABI63186.1| carbamoyl-phosphate synthase large chain [Granulibacter bethesdensis CGDNIH1] Length = 1101 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A KPD Sbjct: 38 SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 97 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +Q LE + + + D+++ + + G+ S++ Sbjct: 98 TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 157 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P VI+P G + + + + ++LIE+ Sbjct: 158 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 217 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + + Sbjct: 218 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHTGDSVTVAPALTLTDREYQRMRDAS 277 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 278 IACLRKIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 333 Query: 291 WM 292 + Sbjct: 334 KL 335 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 52/321 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 579 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 631 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + I T + Sbjct: 632 RLYFEPLTAEDVINLIRREQQSGTVLGCIVQYGGQTPLKLSHALSRAGIPILGTSVDAID 691 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +A ++ ++ S P + I P VI+P + ++ Sbjct: 692 AAEDRERFQALLNGLSLLQPENGIARSAQEAEAITARIGYPVVIRPSYVLGGRAMEIVYD 751 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + + +LI++Y D IE+ + D + + Sbjct: 752 HAGLNRYMREAVRVSGDNPVLIDRYLNDAIEVDVDCIADGERVYVAGVMEHIEEAGIHSG 811 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEI 262 ++ + P + + E++ + + G+ F S +++ LE+ Sbjct: 812 ---DSACSLPPYSLSPALVDELRAQTEALARGLQVIGLMNVQFAIKREADGSDRIYVLEV 868 Query: 263 NVQPGMTPVSIFPEMAAYAGY 283 N + T P +A G Sbjct: 869 NPRASRT----VPFVAKATGV 885 >gi|303238623|ref|ZP_07325156.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Acetivibrio cellulolyticus CD2] gi|302593742|gb|EFL63457.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp [Acetivibrio cellulolyticus CD2] Length = 337 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 100/299 (33%), Gaps = 23/299 (7%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG--NFGEDGLV 68 E+S A SA+++ GF+V + + + + D FN+ G + Sbjct: 42 EIS-----AVVSAVKNLGFEVRILGTPDDIITNMGIVKKQVDFIFNLSVGFRRRFRLSVA 96 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-PP 127 AI E +PY+ + + +K K + +P P ++ + + + P Sbjct: 97 PAIYEAAGVPYSGADPYTKMVCQNKHLMKSLWDKMNIPTPPWAYIDNISKVQELELPEFP 156 Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +IKP G V + + + S H L+IE+++ G E V+G+ Sbjct: 157 IIIKPAYEGNSIGINANAVAYNKEELFSKIEAIYSTLH-MPLIIEKFIAGKEYKIVVIGN 215 Query: 185 ASLDVTEIAV-------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + + + + Y + + V + + Sbjct: 216 KNQKFIGMVEYLNGGGSSLRNEFIYFSAKVNGDYYQVRRDINLPEYKSIKSDCQAIYEMF 275 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + D D K ++LE N + PV + + +++ +++ + Sbjct: 276 L-PVDYGTFDIRVDEY-GKHYFLEFNADDSLHPVRTMAQCCKLNDIDYEKMIESILKSS 332 >gi|257784417|ref|YP_003179634.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM 20469] gi|257472924|gb|ACV51043.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM 20469] Length = 1073 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 89/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL GF+V ++ + SV V+ +PD Sbjct: 29 SGTQACRALRKEGFEVVLVNSNPATIMTDPETADRTYVEPITVESVTRVIERERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G ++ + R + + + + Sbjct: 89 NMGGQTALNCTIGLGEAGVLDKYNIEVIGCNLDSIRTGEDRELFSEAVQDIGLEVARADI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P VI+P G + + + + Q + ++L+E+ Sbjct: 149 AHSMEDAQRIVADLGYPVVIRPSFTLGGAGGGIAHTPEELVEIVEQGLLLSPEHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + + + + + ++ Sbjct: 209 SIEGWKEIEMEVMRDTTGNGIVVCSIENLDPMGVHTGDSITVAPAQTLTDKELQNLRDYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAILERVGVACGGSNVQFAVNPTNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKM 322 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V V+ KP+ L G Sbjct: 586 ALREQGYETVMVNCNPETVSTDYDTSDRLYFQPLTFEDVMDVIEVEKPEGVIVTLGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A D+ + + P D+ Sbjct: 646 IKLARALKDAGVPIMGTQPEAIDLAEDRDRFAALLDRLNIACPPSAVASTMDEARDAARR 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P G+ ++ D + + ++ + ++ + D IEL + Sbjct: 706 IGYPLIVRPSYVLGGRGMAIVYDDSDLVTYMKSATHVTPDRPVYLDAFLEDAIELDVDAL 765 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++ P + I +++ + A RG Sbjct: 766 CDTEECYVGSVLEHIEECGIHSG---DSACCWPPFSLSEKIVGQIRAITKKLALACDIRG 822 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + VF +E+N + T P + G S + + Sbjct: 823 LLNIQYAV--RDEHVFVIELNPRASRT----VPFSSKATGVSLAKFASRI 866 >gi|308050594|ref|YP_003914160.1| carbamoyl-phosphate synthase large subunit [Ferrimonas balearica DSM 9799] gi|307632784|gb|ADN77086.1| carbamoyl-phosphate synthase large subunit [Ferrimonas balearica DSM 9799] Length = 1073 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEKHGVLAEFGVEMIGATADAIDKAEDRARFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEDAHKVLDQVGFPCIIRPSFTMGGTGGGIAYNIEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGVNPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P ++ + Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLKQPENSTVTALEQAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ Sbjct: 702 RDAERIGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + +S + + P + I E++ Sbjct: 762 DVDAVCDGTDVVIGGIMEHIEQAG---VHSGDSGCSLPPYTLSAAIQDEMREQVRKLALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F ++ +E+N + T P ++ G ++ Sbjct: 819 LGVIGLMNVQFAV--KDNVIYLIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|167039321|ref|YP_001662306.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp. X514] gi|300913961|ref|ZP_07131278.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp. X561] gi|307725354|ref|YP_003905105.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter sp. X513] gi|226700942|sp|B0K4D7|CARB_THEPX RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|166853561|gb|ABY91970.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp. X514] gi|300890646|gb|EFK85791.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp. X561] gi|307582415|gb|ADN55814.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp. X513] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A KPD Sbjct: 29 SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRKLFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + ++I T + Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNGVKILGTSYESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D +S P +++P + + Sbjct: 663 ISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLSFPLLVRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLI----PGIMEHIERAGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P M+ G +L Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855 >gi|39996378|ref|NP_952329.1| carbamoyl-phosphate synthase large subunit [Geobacter sulfurreducens PCA] gi|39983258|gb|AAR34652.1| carbamoyl-phosphate synthase, large subunit [Geobacter sulfurreducens PCA] gi|298505388|gb|ADI84111.1| carbamoyl-phosphate synthase, large subunit lipoprotein, glutamine-dependent [Geobacter sulfurreducens KN400] Length = 1081 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + ++ +PD Sbjct: 29 SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPEVLAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V LE + + + A + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYSEAMTVVKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMAGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP+ G Sbjct: 597 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLSIVELEKPEGVIVQFGGQTP 656 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + + P + + + Sbjct: 657 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANR 716 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +++ + + + +LI++++D IE+ + Sbjct: 717 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDAL 776 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I + +E++R + + +G Sbjct: 777 CDGTDVVIGGIMEHIEEAGIHSG---DSACCLPPHSISQALVEEIRRQTTVMALELNVKG 833 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + ++ LE+N + T P ++ G ++ Sbjct: 834 LMNVQYAI--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAAR 876 >gi|269926476|ref|YP_003323099.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790136|gb|ACZ42277.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum ATCC BAA-798] Length = 1095 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G V ++ + + + +++ +PD Sbjct: 29 SGSQACKALREEGIFVVLVNSNPATIMTDEATADRVYIEPLNVDVLEKIISRERPDGILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + V+ I++ + + + + + D+ + V + Sbjct: 89 TLGGQTGLNLAVELASAGIVDKYGVKLLGTSLESIKQAEDRLLFKQLLQEIGEPVIESMT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + + I P + +P G + + + S + Q L+E+ Sbjct: 149 VHSVQEAIAFANQIGYPLISRPAYTLGGTGGGIAHNQGELTKLIEHSLRASPIGQTLLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G I V + ++ + + Y+ ++ Sbjct: 209 SIEGW-KEIEYEVIRDSADNAIIVCNMENIDPVGVHTGDSIVVAPSQTLTDRQYQILRDS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F DP S + +E+N P ++ S + GY + Sbjct: 268 ALRIVRALKIEGGCNVQFALDPKSDDYYVIEVN--PRVSRSS--ALASKATGYPIARVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 11/169 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + ++ + +L+++Y++G E+ Sbjct: 719 ATRIGYPLLVRPSYVLGGQAMRIVYNEVELLDYIDAATEVSGDHPVLLDRYIEGTEVEVD 778 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239 + D V P + S +S V P D +++ + +A+ Sbjct: 779 AVSDGETVVI----PGIVEHIERAGVHSGDSFGVYPQITLDDRDVSQIEEITVKLARAMN 834 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ F+ +V+ LE+N + T P ++ G L Sbjct: 835 VKGLMNVQFVV--QDHQVYILEVNPRASRT----VPFISKVTGVPLVTL 877 >gi|171463552|ref|YP_001797665.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193090|gb|ACB44051.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1087 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL D G+KV + DV V ++A KPD+ Sbjct: 29 SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIATEKPDVILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + A + D+ + K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLEKYGCKLIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAHEVQQRIQHETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P+ ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREICVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKIAAKL 333 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 94/296 (31%), Gaps = 33/296 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAKEKPKGVIVQY 646 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 647 GGQTPLKLALDLEHNGVPIIGTPPDMIDAAEDRERFQKLLKDLGLRQPPNRTARTEEEAL 706 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ +H +L++++ D IE Sbjct: 707 KLAEEIGYPLVVRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 766 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + +E++RL + Sbjct: 767 DVDCISDGEKVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSDATVEEIKRLTAAMAKG 823 Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F + K ++ LE+N + T P ++ G ++ Sbjct: 824 LNVVGLMNVQFAIQNVDGKDIIYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 875 >gi|166367783|ref|YP_001660056.1| carbamoyl phosphate synthase large subunit [Microcystis aeruginosa NIES-843] gi|166090156|dbj|BAG04864.1| pyrimidine-specific carbamoyl-phosphate synthase large chain [Microcystis aeruginosa NIES-843] Length = 1081 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ K+ + GVPVCPS + Sbjct: 89 TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N P +I+P G + + + Q+L+E Sbjct: 149 ANNLEEAKAIAHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ + Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 56/168 (33%), Gaps = 7/168 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D + + + +LI+++++ + Sbjct: 712 AKRIGYPVVVRPSYVLGGRAMEIVYSDSELERYMKYAVQIEPDHPILIDKFLEN-AIEVD 770 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + T + + +S ++ + + + +++ +A+ Sbjct: 771 VDALSDATGTVVIGGLMEHIEQAGVHSGDSACSIPHTSLSASVLTTIRQWTVELAKALKV 830 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ + V+ LE N + T P ++ G ++ Sbjct: 831 IGLMNIQYAV--QGETVYILEANPRASRT----VPYVSKATGVPLAKV 872 >gi|22095498|sp|Q59599|CARB_NEIGO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1071 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 90/298 (30%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV ++V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L ++ + A + D R K+ + G+ S+ Sbjct: 89 TMGGQTXLNCALDLAGNGVLAKYDVELIGATEDAIDKAEDPGRFKEAMEKIGLSCPKSLF 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLIEQ Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAETLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPEKGEMIVIEMN--PRVSRSS--ALASKATGFPIAKV 322 Score = 43.3 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 33/286 (11%) Query: 21 ACASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLH 59 + +AL ++GF+ + D D S L L + ++H Sbjct: 576 SVHAALPLRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVH 635 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118 + L + + + + D+ R ++V++ G+ P+ + + Sbjct: 636 YGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEA 695 Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176 I P V++P + ++ +++ + + + +L++ + + IE Sbjct: 696 LVKAEEIGYPLVVRPSYVLGGPAMQIVHSAEALQKYMREPVQVSEDSPVLLDFFLNNAIE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + D V + + + + P + +I E++R Sbjct: 756 VDVDCVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAY 812 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 A+G G+ F VF LE+N + P ++ G Sbjct: 813 ALGLVGLMNVQFAV--QDAVVFVLEVNPR----ATRTVPFVSKATG 852 >gi|163750814|ref|ZP_02158049.1| carbamoyl-phosphate synthase large subunit [Shewanella benthica KT99] gi|161329509|gb|EDQ00503.1| carbamoyl-phosphate synthase large subunit [Shewanella benthica KT99] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + + +L+ + + A + D+ R + + + G+ Sbjct: 89 TMGGQTALNCALELESKGVLKEFNVEMIGATADAIDKAEDRGRFDKAMKAIGLECPRAGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + Q + +LLI++ Sbjct: 149 AHTMAEAFAVQETLGFPCIIRPSFTMGGSGGGIAYNIEEFEEICTQGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ I D D V ++ KP G Sbjct: 587 ALREDGYETIMINCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ + S Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQKAIQRLEMKQPENDTVTTVENAIISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + D+ ++ +G G Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSEDVQNRMRDQVEKLAIELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|163782970|ref|ZP_02177965.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1] gi|159881650|gb|EDP75159.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1] Length = 556 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G++V ++ + + + V+ +PD Sbjct: 29 SGTQACKALRQEGYEVVLVNSNPATIMTDPEVADRTYIEPLTEEILEEVIRRERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + IL+ + + A D+ ++ +++ G+ V S Sbjct: 89 TLGGQTALNLSVKLYEEKILDAYGVEMIGANYEAIKRGEDRELFREAMNNIGLKVPESAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + L + + Q+L+++ Sbjct: 149 VSSEEEGLRAVEEIGFPVILRPAFTLGGTGGSIAYNVEEFKHKLEVALKTSPIHQVLLDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEFEFEVIRDKADNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREIGVDTGGSNIQFAVSPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|297545468|ref|YP_003677770.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843243|gb|ADH61759.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A KPD Sbjct: 29 SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 14/267 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + ++I T + Sbjct: 606 DRLYFEPITV---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNGVKILGTSYESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D + P +++P + + Sbjct: 663 ISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLI----PGIMEHIERAGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P M+ G +L + + Sbjct: 837 ASRT----VPIMSKATGVPLVKLAVEI 859 >gi|289579317|ref|YP_003477944.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter italicus Ab9] gi|289529030|gb|ADD03382.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter italicus Ab9] Length = 1072 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A KPD Sbjct: 29 SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG K I D D V + KP + G Sbjct: 580 ALREAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDVLNIYEKEKPLGVMVMFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + + +K + P L D Sbjct: 640 INLTEGLVKNGVKILGTSYESIDISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + + Q + + ++ + G +LI++Y+DG E+ + Sbjct: 700 LGFPLLVRPSYVIGGQSMEKVNTLQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + PA+ + + +A+ +G Sbjct: 760 DGECVLI----PGIMEHIERAGVHSGDSFSIYPARNLSEREINTIIEYTERISKALNVKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F V+ LE+N + T P M+ G +L + + Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPLVKLAVEI 859 >gi|222824388|ref|YP_002575962.1| carbamoylphosphate synthase, large subunit [Campylobacter lari RM2100] gi|222539609|gb|ACM64710.1| carbamoylphosphate synthase, large subunit [Campylobacter lari RM2100] Length = 1087 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ L ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVYESGELGDVKFLGANPQAIKKGEDRQIFKESMKKIGMDLPKSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V+ + + + ++LIE+ + Sbjct: 149 NYEEALKAVEEIGFPLMIRASFTLGGAGSGVVYNMDEFAELANTALALSPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENVDPMGVHTGDSITIAPALTLTDKEYQAMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 88/263 (33%), Gaps = 17/263 (6%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ +PD ++H L + L+ D Sbjct: 617 FEPIDF-EHLRAVIDRERPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 673 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + + G+ + + + + I P +++P + V+ + + Sbjct: 674 RKKFAKFIEDLGINQPKNGTAISVEEAIIKANEIGYPVLVRPSYVLGGRAMRVVHDESEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + +LI+Q++D EL + D + + E S Sbjct: 734 RLYMQEAVDVSDKSPVLIDQFLDNATELDVDAISDGKDVYVAGIMEHIE----EAGIHSG 789 Query: 210 NSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 +S LPA + + +++ +G G+ F K++ +E+N + Sbjct: 790 DSACSLPAINIDETMLEMIEQKTKDIALNLGVVGLLNIQFAI--HDNKLYMIEVNPRASR 847 Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 848 T----VPFVSKATGIPLAKVATR 866 >gi|319763188|ref|YP_004127125.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus denitrificans BC] gi|330825251|ref|YP_004388554.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus denitrificans K601] gi|317117749|gb|ADV00238.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus denitrificans BC] gi|329310623|gb|AEB85038.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus denitrificans K601] Length = 1083 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G++V I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYRVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+++ K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLWRNGVLNKYRVELIGAKPEAIDKAEDRLKFKDAMTRIGLESARSGI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKHVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 91/295 (30%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP+ Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + E + I T ++ +A ++ + P + M Sbjct: 644 GGQTPLKLALGLEREGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAM 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L+++++ + Sbjct: 704 EKASALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNESPVLLDRFLSN-AIE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + + E++R + Sbjct: 763 CDVDCVRDATGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 822 Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 823 NVVGLMNVQFAIQETDAGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 873 >gi|85058398|ref|YP_454100.1| carbamoyl phosphate synthase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84778918|dbj|BAE73695.1| carbamoyl-phosphate synthase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 1074 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 92/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALELGREGVLKEFGVEMIGATADAIDKAEDRQRFDKAMKKIGLETARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + +LLI++ Sbjct: 149 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICECGLDLSPTTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEIEVVRDKKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIIIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 648 LKLAHSLEAAGVPVIGTSPDSIDRAEDRERFQQAVERLGLKQPANATVTTIDLAVEKAAT 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + S ++ +L+++++D V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDTDLLRYFHNAVSVSNNAPVLLDRFLDD---AVEVDV 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ + RG Sbjct: 765 DAVCDGENVLIGGIMEHIEQAGVHSGDSACSLPAYTLSREIQDVMRQQVEKLAFELQVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G + ++ Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVALAKVAAR 867 >gi|300812995|ref|ZP_07093381.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496029|gb|EFK31165.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1066 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 98/292 (33%), Gaps = 32/292 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG++ + D D V ++ +PD A G Sbjct: 581 ALKEAGYETIIVNNNPETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A ++ P ++ + + + Sbjct: 641 IKLSQDLMKMGVPILGTSADSVDAAEDRERFDEILGKCQIDRPKGQTVFTAEEALKAANE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGV 181 + P +++P G+ + D + + +LI++Y+ G E Sbjct: 701 LGYPVLVRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDA 760 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + + +S + + P KI ++ + + + +A+ + Sbjct: 761 ICDDEGILIPGIMEHVERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVK 817 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ KV+ +E+N + T P ++ G ++ ++ Sbjct: 818 GLMNIQFIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDVATNVI 863 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNV 57 G AL + G +V I D D + + + KPD Sbjct: 30 GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLMEKEKPDALLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 + G + + + LE + + ++ D++ K ++ V + Sbjct: 90 MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + +Q + + + LIEQ Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLRLSRVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +G F +P S + +E+N P ++ S + GY +L Sbjct: 269 LNIITALNIKGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|217970147|ref|YP_002355381.1| carbamoyl phosphate synthase large subunit [Thauera sp. MZ1T] gi|217507474|gb|ACK54485.1| carbamoyl-phosphate synthase, large subunit [Thauera sp. MZ1T] Length = 1076 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVERIIDKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLGRHGVLAKYGVELIGASEEAIDKAEDRLKFKDAMTRIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + ++LLIE+ Sbjct: 149 AHSMEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFQEICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPQDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.5 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L + + ++H G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDLLEIVHIEKPVGVIVQFGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ +A ++ + V P + + Sbjct: 642 LKRAQALEANGVPIIGTSPDMIDAAEDRERFQQLLVELGLRQPPNRTARTPAEAVRLAAE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + E++R +A+ G Sbjct: 762 SDGKQVMIGGIMEHIEQAG---VHSGDSACSLPPYTLSARLQDELRRQTEAMARALKVVG 818 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ ++ Sbjct: 819 LMNVQFAIQGEGDNAVVYVLEVNPRASRT----VPFVSKACSLPLAKIAAR 865 >gi|226946317|ref|YP_002801390.1| carbamoyl phosphate synthase large subunit [Azotobacter vinelandii DJ] gi|226721244|gb|ACO80415.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Azotobacter vinelandii DJ] Length = 1073 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ GF+V + D ++V ++ +PD Sbjct: 29 SGAQACKALKEEGFRVILVNSNPATIMTDPTMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +L + + + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALALEKHGVLTKFGVEMIGANADTIDKAEDRSRFDKAMRAIGLECPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMDEAYGVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATARSEDEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ ++ + + ++ ++ +L++ + IE+ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEDELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P I +++ Sbjct: 762 DIDAVCDGEDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDDIREQVKKMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ ++ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGQSLAKIAAR 866 >gi|256752676|ref|ZP_05493527.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748438|gb|EEU61491.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 259 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 24/260 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 DL FN ++ + L + G ++ DK K +V+S G+P + Sbjct: 2 DLIFNAS--------SMKEVAFLEVFNIPYVGSGLDVVATDKRMRKDIVASHGLPTPKYV 53 Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLI 168 + + P +KP+ G S GI ++ + G LI Sbjct: 54 IAENPQEIPSVDHLKFPLFVKPISGRGSAGIDEENIIYDKDKLPQVVSKITEKIGQAALI 113 Query: 169 EQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 E++++G E+T G++G V + + N P ++P ++ ++ Sbjct: 114 EEFIEGKEVTVGIIGYKHPQVLPLLEVGYNNVKTNTYEHKMFDNEIIKCPIEVPKEVEEK 173 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----------IFPE 276 ++ A ++ + + +R D + ++LE+N G+T S Sbjct: 174 IKETALNIYKVLNAKDFARIDMILS-KDNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGY 232 Query: 277 MAAYAGYSFRELLLWMVEDA 296 MA AG + E + ++E A Sbjct: 233 MAKAAGLTRGEFIGKIIESA 252 >gi|255321830|ref|ZP_05362980.1| carbamoyl-phosphate synthase, large subunit [Campylobacter showae RM3277] gi|255300934|gb|EET80201.1| carbamoyl-phosphate synthase, large subunit [Campylobacter showae RM3277] Length = 1115 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V I D D S+ ++ K D Sbjct: 29 SGTQAAKTLKQLGYRVVLINSNPATIMTDPDFADATYVEPITKESIKRIIDKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +Q +L ++ + + + + +P Sbjct: 89 TMGGQVALNVAMQLYEADMLGGVKFLGANPQAIKKGEDRQEFKKAMQKIGMDLPQSQYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V + ++L+E+ + Sbjct: 149 DMDEALAAAANIGFPLIIRASYTLGGAGSGVAYNIDEFKELAQTGLDASPIHEILVEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 84/277 (30%), Gaps = 26/277 (9%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ H PD G + + +I T + + A Sbjct: 625 FEPIDF-EHVRAVIEHENPDGVIVHFGGQTPLKFAKRLSIAGAKIIGTSARTIDVAEDRK 683 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K P + + ++ I P +++P + + D+ + L Sbjct: 684 KFSEFISKIGVKQPRNDTATSEKEALEKAAAIGYPVLVRPSYVLGGRAMRRVHSDEELRL 743 Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + ++ ++ +LI+++ D +EL + D + + ++ Sbjct: 744 YMSEAVKVSNHSPVLIDKFLQDAVELDVDAISDGKDVYIGAIMQHIEEAGIHSG---DSA 800 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----------------- 254 + P + + ++V+ +G G+ F Sbjct: 801 CILPPLNLTAQMIEKVENQTCDIALNLGVVGLMNIQFAIYENKQSDGEADVSEGSEATGQ 860 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++F +E+N + T P ++ G ++ Sbjct: 861 NELFMIEVNPRASRT----VPFVSKATGVPMAKVATR 893 >gi|1001668|dbj|BAA10403.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Synechocystis sp. PCC 6803] Length = 1105 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ +PD Sbjct: 53 SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 112 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ K+ ++ GVPVCPS + Sbjct: 113 TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 172 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P + G + + + + Q+L+E Sbjct: 173 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 232 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 233 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 292 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ + Sbjct: 293 SIAIIREIGVETGGSNIQFSVNPANGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 348 Query: 290 LWM 292 + Sbjct: 349 AKL 351 Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 89/298 (29%), Gaps = 38/298 (12%) Query: 22 CASA--LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59 C +A L DAG++ + D D S L L + N++ Sbjct: 606 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIIQF 665 Query: 60 ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + +I T + +A ++ P Sbjct: 666 GGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGI 725 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + IS P V++P + ++ D+ + + + +LI++ Sbjct: 726 ARDYEESRVVANRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDK 785 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++ + V + + +S ++ + + ++ +++ Sbjct: 786 FLEN-AIEVDVDSLTDSTGKVVIGSIMEHIEEAGIHSGDSACSIPYTSLSDNVLTTIRQW 844 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+ G+ + +V+ LE N + T P ++ G ++ Sbjct: 845 TEQLARALNVVGLMNIQYAV--QGDQVYILEANPRASRT----VPYVSKATGRPLAKI 896 >gi|161344753|ref|NP_442333.2| carbamoyl phosphate synthase large subunit [Synechocystis sp. PCC 6803] gi|22095495|sp|Q55756|CARB_SYNY3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1081 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ +PD Sbjct: 29 SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 148 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P + G + + + + Q+L+E Sbjct: 149 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ + Sbjct: 269 SIAIIREIGVETGGSNIQFSVNPANGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 89/298 (29%), Gaps = 38/298 (12%) Query: 22 CASA--LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59 C +A L DAG++ + D D S L L + N++ Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIIQF 641 Query: 60 ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + +I T + +A ++ P Sbjct: 642 GGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGI 701 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + IS P V++P + ++ D+ + + + +LI++ Sbjct: 702 ARDYEESRVVANRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDK 761 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++ + V + + +S ++ + + ++ +++ Sbjct: 762 FLEN-AIEVDVDSLTDSTGKVVIGSIMEHIEEAGIHSGDSACSIPYTSLSDNVLTTIRQW 820 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+ G+ + +V+ LE N + T P ++ G ++ Sbjct: 821 TEQLARALNVVGLMNIQYAV--QGDQVYILEANPRASRT----VPYVSKATGRPLAKI 872 >gi|223038584|ref|ZP_03608877.1| carbamoyl-phosphate synthase, large subunit [Campylobacter rectus RM3267] gi|222879986|gb|EEF15074.1| carbamoyl-phosphate synthase, large subunit [Campylobacter rectus RM3267] Length = 1097 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V I D D S+ ++ K D Sbjct: 29 SGTQAAKTLKQLGYRVVLINSNPATIMTDPDFADATYVEPITKESIKRIIDKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +Q +L ++ + + + + +P Sbjct: 89 TMGGQVALNVAMQLYEADMLGGVKFLGANPQAIKKGEDRQEFKKAMQKIGMDLPQSQYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ G V + ++L+E+ + Sbjct: 149 DMDEALAAAANIGFPLIIRASYTLGGAGSGVAYNIDEFKELAQTGLDASPIREILVEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAVNPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 83/260 (31%), Gaps = 11/260 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ H PD G + + +I T + + A Sbjct: 626 FEPIDF-EHVRAVIEHENPDGVIVHFGGQTPLKFAKRLSIAGAKIIGTSARTIDVAEDRK 684 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K P + + ++ I P +++P + + + + L Sbjct: 685 KFSEFISKIGVKQPRNDTATSEKEALEKAAAIGYPVLVRPSYVLGGRAMRRVHDGEELCL 744 Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + ++ ++ +LI+++ D +EL + D + + ++ Sbjct: 745 YMSEAVKVSNHSPVLIDKFLQDAVELDVDAISDGKDVYIGAVMQHIEEAGIHSG---DSA 801 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P + + ++V+ +G G+ F ++F +E+N + T Sbjct: 802 CILPPLNLTAQMIEKVENQTRDIALNLGVVGLMNIQFAI--YENELFMIEVNPRASRT-- 857 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 858 --VPFVSKATGVPMAKVATR 875 >gi|322499742|emb|CBZ34816.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 529 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +ID R+V ++ K D+ FN+ G E ++E LE S Sbjct: 16 KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 75 Query: 94 MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +++ VP + + + P ++K L G +S+GI + ++ Sbjct: 76 KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 135 Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + L+E+++ G E T D F + Sbjct: 136 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 195 Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + Y + G R DF D L+ + + Sbjct: 196 YFEKKWTMECGDQAYGFLASSDPAYTAITDMARNAFKYIMSGVGYGRVDFRIDELTGEPY 255 Query: 259 WLEINVQPGM 268 +LEIN GM Sbjct: 256 FLEINPNCGM 265 >gi|146089042|ref|XP_001466217.1| hypothetical protein [Leishmania infantum JPCM5] gi|134070319|emb|CAM68656.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 529 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%) Query: 34 SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93 +ID R+V ++ K D+ FN+ G E ++E LE S Sbjct: 16 KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 75 Query: 94 MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 +++ VP + + + P ++K L G +S+GI + ++ Sbjct: 76 KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 135 Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + L+E+++ G E T D F + Sbjct: 136 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 195 Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258 + Y + G R DF D L+ + + Sbjct: 196 YFEKKWTMECGDQAYGFLASSDPAYTAITDMARNAFKYIMSGVGYGRVDFRIDELTGEPY 255 Query: 259 WLEINVQPGM 268 +LEIN GM Sbjct: 256 FLEINPNCGM 265 >gi|153813957|ref|ZP_01966625.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756] gi|317501485|ref|ZP_07959683.1| carbamoylphosphate synthase large subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|331088043|ref|ZP_08336964.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA] gi|145848353|gb|EDK25271.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756] gi|316897114|gb|EFV19187.1| carbamoylphosphate synthase large subunit [Lachnospiraceae bacterium 8_1_57FAA] gi|330408999|gb|EGG88458.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA] Length = 1059 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 93/291 (31%), Gaps = 29/291 (9%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 + +AG++ I+ + V V+ +PD L G Sbjct: 576 KTIRNAGYEAIVINNNPETVSTDYTTSDKLYFEPLCVEDVMNVIELERPDGVIASLGGQT 635 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T + A + + S P ++ + + Sbjct: 636 AVNLAEPLESRGVTIIGTDCEAIEKAENRESFEKLLAALSIPQPKGQAVTNIEDGVKAAA 695 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ K++ + L + N +L++ Y+ G E+ + Sbjct: 696 AIGYPVLVRPSFVLGGRAMQIVAKEEQLRQYLKTAVEINEEKPVLVDHYIRGKEVEIDGI 755 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + S + ++ + R L IG RG Sbjct: 756 CDGQDVFVPGIMELVERTGVHSGDSISVYPSYSISDHVKEVILDYTRRLGLG---IGIRG 812 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ D V+ +E+N + T P ++ GYS ++ ++ Sbjct: 813 LFNIQFIVDQEEN-VYIIEVNPRSSRT----VPFLSKATGYSLADIATRVI 858 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRSV---------------------GLVLAHLKPDLAFNV 57 G AL++ G++V + + + ++ H +PD Sbjct: 30 GTQACLALKEEGYEVILCNSNPATIMTDPAIADKVYMEPLTLEYMAKIVRHERPDAIVPG 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 + G G + +Q E+ T S + A + + V Sbjct: 90 IGGQTGLNLAMQLEKKGVLKECQTELLGTGSESIRQAEDRELFKELCEKLGEPVLPSLVA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G +Q + + + + Q+L+E+ Sbjct: 150 NTAEEALQAAKTIGYPVVLRPAFTLGGTGGGFADDEQEFLGLIHNALALSPVHQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IKG-FKEIEYEVIRDSNDTAITVCNMENLDPVGIHTGDSIVVCPSQTLTNKEYQMLRDSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + +GY + Sbjct: 269 LRLIRALRVEGGCNVQFALDPHSFRYYVIEVN--PRVSRSS--ALASKASGYPIARVSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|295107546|emb|CBL05089.1| carbamoyl-phosphate synthase large subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 1074 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V ++ + V V+ +PD Sbjct: 29 SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITPEFVEQVIVKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + V IL+ + + A D+ + ++ G+ S Sbjct: 89 TLGGQTGLNTAVDLARAGILDKYGVEMIGCDLAAIERGEDRKLFNECMAELGIETSRSGY 148 Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + Q + ++L+E+ Sbjct: 149 AYSLADAEAIVAELGYPVVLRPSFTLGGAGGGIAHDQAELHEIVGQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I +F + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPDNGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AGF+ + D D V ++ +PD L G Sbjct: 587 ALAEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVERPDGVVVTLGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A D+ + + P + Sbjct: 647 LKLANALAEAGVPIMGTSPEAIDLAEDRDRFSAILDEMAITYPAAGMASTYQEACVVADQ 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + +++ + + ++++++G V Sbjct: 707 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG---AVEVDL 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 DA D +++ V + S +S P + + +++ +A +G G Sbjct: 764 DALCDGSQVYVGGVLEHIEMAGIHSGDSACCTPPFALSEALVSQLRSVARDLALRLGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F + ++ +E N + T P ++ G ++ + Sbjct: 824 LINIQFAI--KDQVIYIIEANPRASRT----VPFVSKATGVPLAKMAARI 867 >gi|224823860|ref|ZP_03696969.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum 2002] gi|224604315|gb|EEG10489.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum 2002] Length = 1070 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G+KV + D D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPINWQVVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + +LLIEQ Sbjct: 149 CHTMEESLAAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFATNPDTGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 99/294 (33%), Gaps = 36/294 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL ++GF+ + D D S L L + + H G Sbjct: 582 ALRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEICHVEKPFGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ A ++ + P + M Sbjct: 642 LKLARALEANGVPIIGTTPDMIDCAEDRERFQKMLQELGLKQPPNRTARTPADAMRLAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L++++ D IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDAV 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D L V + + +S ++ + P + + E++R +A+ G Sbjct: 762 SDGELVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPAVQDEIRRQTVAMAKALNVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP--EMAAY--AGYSFRE 287 + F ++ LE+N P ++ V+ P ++AA AG S E Sbjct: 819 LMNVQFAI--QGDTIYVLEVNPRASRTVPFVSKVTGAPLAKIAARCMAGISLTE 870 >gi|110834753|ref|YP_693612.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis SK2] gi|110647864|emb|CAL17340.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis SK2] Length = 1195 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175 I P ++K GG +G+ + +++ +++++ + + Sbjct: 147 AEKIRYPVMLKSTAGGGGIGMQICDNAENLDKAWDSVRRLSANNFSNDGVFIEKYIARAR 206 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + V GD + K LP + +++ A Sbjct: 207 HIEVQVFGDGKGQAVTLGERDCSAQRRHQKVLEETPAPNLPDHVRHELHD----TARTLM 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291 QA+ R +F+ D + ++LE+N + G+T G +L+ W Sbjct: 263 QAVHYRNAGTVEFILDQDTNTFYFLEVNTRLQVEHGVTE--------QIFGV---DLVEW 311 Query: 292 MVEDAS 297 M++ A+ Sbjct: 312 MIKLAA 317 >gi|330447390|ref|ZP_08311039.1| carbamoyl-phosphate synthase large subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491581|dbj|GAA05536.1| carbamoyl-phosphate synthase large subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1072 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLERHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDGQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|319401503|gb|EFV89713.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Staphylococcus epidermidis FRI909] Length = 1057 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + + + Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALKNARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D ++ + + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|312622240|ref|YP_004023853.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kronotskyensis 2002] gi|312202707|gb|ADQ46034.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1077 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQ 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIIDYTIKLARALRVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P + + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNNMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|293366832|ref|ZP_06613508.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|291319133|gb|EFE59503.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329736674|gb|EGG72940.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis VCU045] Length = 1057 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++A ++ ++ + V ++ +P G Sbjct: 580 AIQNADYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + +++ Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D ++ + + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|251810633|ref|ZP_04825106.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis BCM-HMP0060] gi|282876365|ref|ZP_06285232.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis SK135] gi|251805793|gb|EES58450.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis BCM-HMP0060] gi|281295390|gb|EFA87917.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis SK135] Length = 1057 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + +++ Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D ++ + + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|57866726|ref|YP_188352.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis RP62A] gi|242242485|ref|ZP_04796930.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis W23144] gi|81819410|sp|Q5HPY8|CARB_STAEQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|57637384|gb|AAW54172.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis RP62A] gi|242234059|gb|EES36371.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis W23144] Length = 1057 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + S P + + + + Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREISVPQPQGKTATSPKEALKNARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D ++ + + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|27467797|ref|NP_764434.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis ATCC 12228] gi|38257574|sp|Q8CPJ4|CARB_STAES RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|27315341|gb|AAO04476.1|AE016746_266 carbamoyl-phosphate synthase large chain [Staphylococcus epidermidis ATCC 12228] gi|329729964|gb|EGG66355.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis VCU144] gi|329736345|gb|EGG72617.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis VCU028] Length = 1057 Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + + P + + +++ Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D ++ + + +G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|304410332|ref|ZP_07391951.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS183] gi|307301957|ref|ZP_07581715.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica BA175] gi|304351741|gb|EFM16140.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS183] gi|306913995|gb|EFN44416.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica BA175] Length = 1074 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ Q + ++ S ++ +L+++++D + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S + + P + +I ++ +G G+ Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F +++ +E+N + T P ++ G ++ Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|153001909|ref|YP_001367590.1| carbamoyl phosphate synthase large subunit [Shewanella baltica OS185] gi|151366527|gb|ABS09527.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS185] Length = 1074 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ Q + ++ S ++ +L+++++D + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S + + P + +I ++ +G G+ Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F +++ +E+N + T P ++ G ++ Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|160876631|ref|YP_001555947.1| carbamoyl phosphate synthase large subunit [Shewanella baltica OS195] gi|217972239|ref|YP_002356990.1| carbamoyl phosphate synthase large subunit [Shewanella baltica OS223] gi|160862153|gb|ABX50687.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS195] gi|217497374|gb|ACK45567.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS223] gi|315268829|gb|ADT95682.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica OS678] Length = 1074 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ Q + ++ S ++ +L+++++D + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S + + P + +I ++ +G G+ Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F +++ +E+N + T P ++ G ++ Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|126175504|ref|YP_001051653.1| carbamoyl phosphate synthase large subunit [Shewanella baltica OS155] gi|125998709|gb|ABN62784.1| carbamoyl-phosphate synthase large subunit [Shewanella baltica OS155] Length = 1074 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ Q + ++ S ++ +L+++++D + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S + + P + +I ++ +G G+ Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F +++ +E+N + T P ++ G ++ Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|253576161|ref|ZP_04853493.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844504|gb|EES72520.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1070 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLEFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP I Sbjct: 90 LGGQTGLNMAVELARAGVLERENVKLLGTQLTSIEKAEDRDLFRELMRELEQPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G + ++ + + ++ Q LIE+ Sbjct: 150 TSVEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVASGIRYSPIGQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEIEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPQSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 589 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEEEKPVGVIVQFGGQTA 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A K + P ++ + + Sbjct: 649 INLAAPLQAAGVRILGTSLESIDEAEDRKKFEALLSKLGIAQPKGSTVTSVEEAVGTAQA 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ DQ + + ++ + N +LI++Y+ G E+ + Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDQELLRYMEEAVNINPQHPVLIDRYMLGKEVEVDAIS 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + ++ +++ + + + G+ Sbjct: 769 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQHLSAELKEKIVEITVKIARELKTVGL 825 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ + +VF +E+N + T P ++ + + Sbjct: 826 VNIQFVI--YNNEVFVIEVNPRSSRT----VPFLSKVTNIPMANVATQCI 869 >gi|260767327|ref|ZP_05876266.1| carbamoyl-phosphate synthase large chain [Vibrio furnissii CIP 102972] gi|260617650|gb|EEX42830.1| carbamoyl-phosphate synthase large chain [Vibrio furnissii CIP 102972] gi|315181119|gb|ADT88033.1| carbamoyl phosphate synthase large subunit [Vibrio furnissii NCTC 11218] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLACPRADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPQNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDESDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAMELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|288940453|ref|YP_003442693.1| carbamoyl-phosphate synthase large subunit [Allochromatium vinosum DSM 180] gi|288895825|gb|ADC61661.1| carbamoyl-phosphate synthase, large subunit [Allochromatium vinosum DSM 180] Length = 1069 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + R++ ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWRALASIIEQERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +LE + + A + D+ +Q + G+ + S + Sbjct: 89 TMGGQTALNCALDLVREGVLEKFGVELIGASREAIDKAEDRDLFRQAMRKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSLEEAIQVQAPIGFPTIIRPSFTMGGSGGGIAYNQEEFEEICRRGLDLSPTKELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDHADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 36/303 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ + G++ + D D V ++ KP G Sbjct: 587 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEKEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + ++ Sbjct: 647 LKLARALEAAGVPIIGTTPDSIDLAEDRERFQQLIQELGLRQPPNATARSEDEAVERAAA 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDETDLKRYMREAVRVSNESPVLLDRFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S ++ + P + I ++ +A+ G Sbjct: 767 CDGNEVLIGGIMEHIEQAG---VHSGDSACSLPPYTLSPAIQDRMREQMVKMARALNVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM-----VEDAS 297 + + F ++F LE+N + T P ++ G ++ +E+ Sbjct: 824 LMNAQFAI--KGDEIFILEVNPRASRT----VPFVSKAIGVPLAKVAARCMAGRSLEEQG 877 Query: 298 CLR 300 C R Sbjct: 878 CRR 880 >gi|312135338|ref|YP_004002676.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor owensensis OL] gi|311775389|gb|ADQ04876.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor owensensis OL] Length = 1077 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAEK 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVFSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLTEKVKEKIVDYTIKLARALKVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVFLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +D + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIDFAREVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQILRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|307323017|ref|ZP_07602266.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti AK83] gi|306891336|gb|EFN22273.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti AK83] Length = 280 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 13/255 (5%) Query: 50 KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--------S 101 + + N+LHG FGEDG +Q + L + + ++L+M+K V Sbjct: 8 RNEYVVNLLHGQFGEDGGIQTLAALSGVTGSFGDPHVASLTMNKYAMSAFVSSLLPAERI 67 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSS 159 + ++ + P+V+KP GSSL + S ++ Sbjct: 68 RVPKTTLITPRNVDQLINIARSLDRPFVVKPNSLGSSLFAQLFDDPISSDEEIHTLLRKI 127 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPA 217 + + +I++++ G E TCG + +S + V + + S N Sbjct: 128 FTYDTAAVIQEFISGDEYTCGCLISSSEVIPLPIVKLEADNEFCGRDQKYSKNVAKKSVV 187 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 +I + +Q +A +I ++R DF ++++LE N PG F +M Sbjct: 188 NRNDEISERIQNIATSIASSIDLYNMARFDFRVSDED-EIWFLECNYIPGTAKNGSFEKM 246 Query: 278 AAYAGYSFRELLLWM 292 G + +L+ + Sbjct: 247 LNSYGMTVVDLISRI 261 >gi|262404705|ref|ZP_06081260.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586] gi|262349737|gb|EEY98875.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|262170662|ref|ZP_06038340.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451] gi|261891738|gb|EEY37724.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|258620887|ref|ZP_05715921.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573] gi|262166435|ref|ZP_06034172.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223] gi|258586275|gb|EEW10990.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573] gi|262026151|gb|EEY44819.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|229514020|ref|ZP_04403482.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21] gi|229524376|ref|ZP_04413781.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv. albensis VL426] gi|254285956|ref|ZP_04960917.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae AM-19226] gi|150423866|gb|EDN15806.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae AM-19226] gi|229337957|gb|EEO02974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv. albensis VL426] gi|229349201|gb|EEO14158.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|153825895|ref|ZP_01978562.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2] gi|149740393|gb|EDM54524.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|90412472|ref|ZP_01220475.1| carbamoyl-phosphate synthase large subunit [Photobacterium profundum 3TCK] gi|90326509|gb|EAS42915.1| carbamoyl-phosphate synthase large subunit [Photobacterium profundum 3TCK] Length = 1073 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + Q +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEKQGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ + Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTAMEQAIEKSRI 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D ++ + + + S +S LPA +I ++ +G RG Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMREQVTKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|121727498|ref|ZP_01680616.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52] gi|121630166|gb|EAX62568.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|15642386|ref|NP_232019.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591079|ref|ZP_01678391.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 2740-80] gi|147673654|ref|YP_001217891.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O395] gi|153217328|ref|ZP_01951079.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587] gi|153802029|ref|ZP_01956615.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3] gi|153823336|ref|ZP_01976003.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33] gi|153828839|ref|ZP_01981506.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 623-39] gi|227082512|ref|YP_002811063.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2] gi|229507548|ref|ZP_04397053.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX 330286] gi|229512256|ref|ZP_04401735.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33] gi|229519392|ref|ZP_04408835.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9] gi|229521221|ref|ZP_04410641.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM 11079-80] gi|229528623|ref|ZP_04418013.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)] gi|229607054|ref|YP_002877702.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae MJ-1236] gi|254849511|ref|ZP_05238861.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10] gi|255746936|ref|ZP_05420881.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101] gi|262161521|ref|ZP_06030631.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE 91/1] gi|262168373|ref|ZP_06036070.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27] gi|298500250|ref|ZP_07010055.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK 757] gi|22095535|sp|Q9KPH9|CARB_VIBCH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|9656961|gb|AAF95532.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547084|gb|EAX57220.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 2740-80] gi|124113657|gb|EAY32477.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587] gi|124122439|gb|EAY41182.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3] gi|126519143|gb|EAZ76366.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33] gi|146315537|gb|ABQ20076.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395] gi|148875715|gb|EDL73850.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 623-39] gi|227010400|gb|ACP06612.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2] gi|227014283|gb|ACP10493.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395] gi|229332397|gb|EEN97883.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)] gi|229341753|gb|EEO06755.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM 11079-80] gi|229344081|gb|EEO09056.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9] gi|229352221|gb|EEO17162.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33] gi|229355053|gb|EEO19974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX 330286] gi|229369709|gb|ACQ60132.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae MJ-1236] gi|254845216|gb|EET23630.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10] gi|255735338|gb|EET90738.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101] gi|262023265|gb|EEY41969.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27] gi|262028832|gb|EEY47486.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE 91/1] gi|297540943|gb|EFH76997.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK 757] gi|327484885|gb|AEA79292.1| Carbamoyl-phosphate synthase large chain [Vibrio cholerae LMA3894-4] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|152992698|ref|YP_001358419.1| carbamoyl phosphate synthase large subunit [Sulfurovum sp. NBC37-1] gi|151424559|dbj|BAF72062.1| carbamoylphosphate synthase, large subunit [Sulfurovum sp. NBC37-1] Length = 1091 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 88/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG A L++ G++V I+ ++ + ++ D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFAHRTYIEPINEEVIAKIIKKENVDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + LE +E + + + + + +P+ Sbjct: 89 TMGGQTALNVAMSMHDKGMLEGVEFLGANPAAIKKGEDRQEFKEAMIKIGMDLPISQYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +D+ I P +I+ + G V + + ++LIE+ + Sbjct: 149 NMDEALDAAKNIGFPLIIRASYTLAGGGSGVAYNMDEFKEIVRGGLEASPISEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENFDPMGVHTGDSITMAPALTLTDKEYQHMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREVGVDTGGSNVQFSINPDTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD ++H + L + + + L+ D Sbjct: 621 FEPIDF-EHVRNVIELENPDGV--IVHFGGQTPLKLAKNLTAIGAKISGTSAKVIDLAED 677 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + ++ G+ + M + I P +++P G+ + D + Sbjct: 678 RELFSNFITELGLKQPENGTAFAKDEAMAIANRIGYPVLVRPSFVLGGRGMRTVYNDAEL 737 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ S ++ +LI++++D IEL + D + + Sbjct: 738 REYMDEAVSVSNDAPVLIDKFLDNAIELDVDAICDGKDVYIGSVMQHIEEAGIHSG---D 794 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I ++ EV+ +G G+ + +++ +E+N + T Sbjct: 795 SACSLPPVSISDELIAEVKEQTAEIALDLGVIGLLNIQYAIHR--GEIYLIEVNPRASRT 852 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 853 ----VPFVSKATGVPLAKVATR 870 >gi|119897673|ref|YP_932886.1| carbamoyl phosphate synthase large subunit [Azoarcus sp. BH72] gi|119670086|emb|CAL93999.1| Carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Azoarcus sp. BH72] Length = 1075 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPETADVTYIEPITWQVVERIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLARHGVLEKYGVELIGASGEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + ++LLIE+ Sbjct: 149 AHSLEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFHDICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L + + ++H G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDILEIVHIEKPVGVIVQFGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ +A ++ + P + + Sbjct: 642 LKRAQALQDNGVPIIGTSPDMIDAAEDRERFQKLLNDLGLKQPPNRTARTPEAAVRLAAE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + E++R +A+ G Sbjct: 762 SDGEQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAKLQDELRRQTEAMARALNVVG 818 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ ++ Sbjct: 819 LMNVQFAIQGEGDNAVVYVLEVNPRASRT----VPFVSKACSLPLAKIAAR 865 >gi|310642960|ref|YP_003947718.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa SC2] gi|309247910|gb|ADO57477.1| Carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa SC2] Length = 1071 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEKAEDRDLFRDLMRELEQPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +++ + I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTLEESLEFANEIGYPIIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPIGQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDGNDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A K + P ++ + + Sbjct: 648 INLAAPLSAAGVNILGTSLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + + ++ N +LI++Y+ G E+ + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + ++ K+V + + + G+ Sbjct: 768 DGETVLVPGIMEHVERAG---VHSGDSIAVYPPQHLSDELKKKVVDITISIAKELKTIGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ L + Sbjct: 825 VNIQFVIHQ--DEVYVIEVNPRSSRT----VPFLSKVTNIPMANLATQAI 868 >gi|296120606|ref|YP_003628384.1| carbamoyl-phosphate synthase, large subunit [Planctomyces limnophilus DSM 3776] gi|296012946|gb|ADG66185.1| carbamoyl-phosphate synthase, large subunit [Planctomyces limnophilus DSM 3776] Length = 1090 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G++V + D + + V ++ + +PD Sbjct: 29 SGTQACKALRECGYEVVLVNSNPATIMTDPNTADSTYIEPIHWQYVAKIIENERPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + ++ LE + + D+ K+ + G+ VC S Sbjct: 89 TLGGQTGLNTGMELFRRGILEKYNCEMIGARADVIEKAEDRQLFKEAMQKIGLDVCRSRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D I P +I+ +G + + + + + +++L+E+ Sbjct: 149 VNSMEEARDVLKEIGLPIIIRASFTLGGMGGGIAYNREEFEEKVRKGIELSPINEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SIIGWKEYEMEVMRDKADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRMRDAT 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVMREIGVETGGSNVQFAIHPQTGRMVVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + ++ V + L+PD G Sbjct: 594 ALRELGIESVMVNSNPETVSTDYDTSDLLFFEPLTTEDVLNICDRLQPDGVIVQFGGQTP 653 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ +A + + P + Sbjct: 654 LNLARGLEQAGVKIIGTSPSMIDAAEDREIFKGILDKLGLHQPPNGMATDAARAVQIASE 713 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + + ++ + + ++ + + +LI+++++ Sbjct: 714 IGYPVLVRPSFVLGGRAMQICYDERMVREYMTEAVNVSPDRPVLIDKFLEDAVEVDV--D 771 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 S + + +S ++ + P +P I E++ + + + RG+ Sbjct: 772 AISDGEITVVGGVMEHIEEAGVHSGDSACVLPPYSLPDAIVDEIKTATYALAKELQVRGL 831 Query: 244 SRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F + + LE+N + T P ++ +L + Sbjct: 832 MNIQFAVKHQGGEPVVYVLEVNPRASRTS----PFVSKATNVPLPKLAAKI 878 >gi|261211488|ref|ZP_05925776.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341] gi|260839443|gb|EEX66069.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341] Length = 1076 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|24372725|ref|NP_716767.1| carbamoyl phosphate synthase large subunit [Shewanella oneidensis MR-1] gi|24346791|gb|AAN54212.1|AE015558_6 carbamoyl-phosphate synthase, large subunit [Shewanella oneidensis MR-1] Length = 1074 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + +I ++ +G G Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|312793754|ref|YP_004026677.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876847|ref|ZP_07736824.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796362|gb|EFR12714.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A] gi|312180894|gb|ADQ41064.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1077 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEK 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIVDYTIKLARALKVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D + V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KNENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEDLRYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|317050357|ref|YP_004111473.1| carbamoyl-phosphate synthase large subunit [Desulfurispirillum indicum S5] gi|316945441|gb|ADU64917.1| carbamoyl-phosphate synthase, large subunit [Desulfurispirillum indicum S5] Length = 1087 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + + ++ +P Sbjct: 29 SGTQAIKALKEEGYEVVLINSNPATIMTDAQMADATYIEPITASVIEKIIEKERPCAILP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPS 110 + G + V+ IL+ + + + A D+ K+ ++ G+ + C Sbjct: 89 TVGGQTALNAAVEVAETGILKKYNVEMIGANLKAIQKGEDRELFKEAMNRIGLEMPRCGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LI++ Sbjct: 149 AHSLEEARKIVREMGLPAIIRPSFTLGGSGGGIAYNMEEFDEIVASGLDASPSREILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SIIGWKEYEMEVMRDKNDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQLMRDAT 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVIREIGVDTGGSNVQFAVNPDDGRLVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 90/286 (31%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D + ++ KP G Sbjct: 592 ALSEDGFETIMVNCNPETVSTDYDTSDRLYFEPVTREDILSIVEKEKPHGLIIQFGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + ++ Sbjct: 652 LKLAVALEKANVPILGTSPDAIDRAEDRERFKKLVEKLELKQPANATATSEAQALEIAER 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P V++P + ++ ++ + ++ + +LI+ +++ E+ + Sbjct: 712 IGYPVVVRPSYVLGGRAMEIVYNVDALKNYMEKAVKASPEHPVLIDHFLEHATEVDVDAV 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + +I +E++R L + G Sbjct: 772 CDGENVIVAGIMEHIEEAGIHSG---DSACSLPPKSLSAEICEEIRRQTRLLALELKVVG 828 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F +++ +E+N + T P ++ G F ++ Sbjct: 829 LMNIQFAI--KGGEIYLIEVNPRASRT----VPFVSKATGIPFAKI 868 >gi|126656685|ref|ZP_01727899.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110] gi|126621905|gb|EAZ92613.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110] Length = 340 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 24/290 (8%) Query: 24 SALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82 ++L V + +++ + DL + +++ +LL IPY + Sbjct: 56 ASLSRQDISVAKPLSPSQAIQW-ITEQNIDLVLPQM-FCIPGMTQYRSLFDLLNIPYLGN 113 Query: 83 GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142 AL+ +K ++K +V S GV V L+++ + + PP VIKP +SLG+ Sbjct: 114 TAELMALTANKAKAKAIVRSMGVKVPYGELLHKGDTPN---LRPPVVIKPDNSDNSLGVT 170 Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202 ++K L ++ + L+ E G E+ CG + ++ + Sbjct: 171 LVKTMDECDTALEKAFEYA-DQVLVEEYIELGREVRCGTIVKEGELISLPLEEYAVNTEN 229 Query: 203 ELKYSS----------------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + + + + VQ +A HQA+GCR S Sbjct: 230 NPIRNHEDKLKKDDSGELTYAAKDKKKAWIVDSNNPVTRRVQEIAKQCHQALGCRHYSLF 289 Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 DF DP + ++LE + +P S+ P MA G S ELL ++++A Sbjct: 290 DFRIDPQ-GQPWFLEAGLYCSFSPKSVIPMMAQAKGISLNELLEIVIKEA 338 >gi|329114164|ref|ZP_08242926.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum DM001] gi|326696240|gb|EGE47919.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum DM001] Length = 1084 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L + + + D+ + ++ + + G+ S + Sbjct: 89 TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D+ I P +I+P G + + +L + ++L+E+ Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRAIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AG++ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + +++ G + + T + + Sbjct: 616 RLYFEPLTAEDVISLIRCEQQKGTVKGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + P V++P + ++ Sbjct: 676 RAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVVVRPSYVLGGRAMEIVYD 735 Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + D + IE + D + + + Sbjct: 736 RNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIADGTDVYVAGVMEHIEEAG 795 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + I E++ + +G G+ + +++F LE Sbjct: 796 IHSG---DSACALPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAI--KDQEIFVLE 850 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873 >gi|258542083|ref|YP_003187516.1| carbamoyl phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01] gi|256633161|dbj|BAH99136.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636218|dbj|BAI02187.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639273|dbj|BAI05235.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642327|dbj|BAI08282.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645382|dbj|BAI11330.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648437|dbj|BAI14378.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651490|dbj|BAI17424.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654481|dbj|BAI20408.1| carbamoyl-phosphate synthase large subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1084 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L + + + D+ + ++ + + G+ S + Sbjct: 89 TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D+ I P +I+P G + + +L + ++L+E+ Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRAIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AG++ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + +++ G + + T + + Sbjct: 616 RLYFEPLTAEDVISLIRCEQQKGTVKGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + P V++P + ++ Sbjct: 676 RAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVVVRPSYVLGGRAMEIVYD 735 Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + + D + IE + D + + + Sbjct: 736 RNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIADGTDVYVAGVMEHIEEAG 795 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + I E++ + +G G+ + +++F LE Sbjct: 796 IHSG---DSACALPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAI--KDQEIFVLE 850 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873 >gi|221134942|ref|ZP_03561245.1| carbamoyl phosphate synthase large subunit [Glaciecola sp. HTCC2999] Length = 1073 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD+ Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKERPDVILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A A+ + R + + + + Sbjct: 89 TMGGQTALNCALDLNKFGVLEKYNCELIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ H I P +I+P G + + + +LLI++ Sbjct: 149 AHSLEEAHEVSKRIGFPCIIRPSFTMGGSGGGIAYNIDEFNEICTRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGICPNTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 33/285 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V ++ +P Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P ++ + Sbjct: 642 GGQTPLKLARALEANGVPIIGTSPDAIDRAEDRERFQHMVHKLDLKQPANATVSNMEQAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I P V++P + ++ + + L ++ ++ +L+++++D IE+ Sbjct: 702 EEAVKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNEAVKVSNDSPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + +I ++ Sbjct: 762 DIDAICDGEKVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSEEIQNVMRAQVKAMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +G G+ + F +V+ +E+N + T P ++ G Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----IPFVSKATG 857 >gi|297180937|gb|ADI17140.1| carbamoylphosphate synthase large subunit (split gene in mj) [uncultured gamma proteobacterium HF0070_08D07] Length = 1073 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + ++V ++A +PD Sbjct: 29 SGAQACKALKEEGLRVVLVNSNPATIMTDPAMADATYIEPVNWKTVREIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +LE + A + D+ + + G+ S++ Sbjct: 89 TMGGQTALNCALDLVREGVLEEFSCRMIGASKEAIDKAEDRELFDKAMKKIGLGTPRSVI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + + + +LLI++ Sbjct: 149 CHSLEEAIQVQKQVGFPCIIRPSFTLGGSGGGIAYNKEEFEEICGRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEFEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPSQTLTDKEYQLLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAISPDDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 40/323 (12%), Positives = 102/323 (31%), Gaps = 47/323 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ + A+ + GF+ + D D Sbjct: 561 IMVLGGGPN-------RIGQGIEFDYCCVHASQAIREEGFESIMVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V + +P G + I T + A Sbjct: 614 RLYFEPLTLEDVLAIAEVEQPQGVIVQFGGQTPLKLARGLESFGVPIIGTSPDAIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ +Q + Sbjct: 674 RERFQKLVDGLGLRQPANRLAREIDEAVANADKIGYPIVVRPSYVLGGRAMEIVYGEQEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L+++++D E+ ++ D V + + +S Sbjct: 734 RQYMRSAVEVSNESPVLLDRFLDHALEVDVDLVSDGEKAVVGAIMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P ++ DI ++++ + +G G+ ++F +E+N + T Sbjct: 791 SACSLPPYRLSTDIQNKIRQQTIKISKELGVVGLMNVQLAV--QDGEIFLIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292 P ++ G S ++ + Sbjct: 849 ----IPFVSKCIGVSLAKIAARL 867 >gi|262274895|ref|ZP_06052706.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP 101886] gi|262221458|gb|EEY72772.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP 101886] Length = 1077 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYNVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFDEICRRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENVDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLKQPANATVTALEQAVEKARE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + ++ S ++ +L+++++D E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + DI E++R +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDEMRRQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|219666420|ref|YP_002456855.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium hafniense DCB-2] gi|219536680|gb|ACL18419.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium hafniense DCB-2] Length = 1075 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 107/303 (35%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + + ++ +PD Sbjct: 29 SGTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + + IL+ + + A D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLSSELAKAGILDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSP 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G ++ + + + + S + Q+L+E+ Sbjct: 149 AYTVEEAEKIAQELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + + + + + + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPM-LTISQELQERLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +AI G + F DP + +V +EIN + T S + G+ L+ Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322 Query: 291 WMV 293 ++ Sbjct: 323 SLL 325 Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ I D D V + +P A G Sbjct: 580 ALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKERPIGAIVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T ++ A D+ R + +P + + + Sbjct: 640 LNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEM 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ ++ + + + +LI+++++ Sbjct: 700 IGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLEN---AIEAEA 756 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S V+P D + + + Q + G Sbjct: 757 DAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + KV+ LE N + T P ++ L ++ Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKICNTPMARLATELI 861 >gi|323140642|ref|ZP_08075566.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium sp. YIT 12067] gi|322414906|gb|EFY05701.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium sp. YIT 12067] Length = 1069 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFNV 57 G AL++ G +V I DV D + ++ +PD Sbjct: 30 GTQACRALKEEGLEVVLINSNPATIMTDVHVADRVYVEPISDEFIEKIIKRERPDSLLAT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + + Q IL+ + + I A D+ K +P + Sbjct: 90 LGGQVGLNMAMKLEEQGILDKYNVRLLGTQISAIKRGEDREMFKETMEKIHQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D I P +++P G + + ++ + + + ++ Q LIE+ Sbjct: 150 ETIEAACDFGKEIGYPLIVRPAYTLGGTGGGIAENEEELIDIVQKGLGYSPIGQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + + ++ +++ + Sbjct: 210 IAGWKEIEYEVIRDAADNCITVCSMENLDPVGVHTGDSIVVAPAQTLSDKEVQL-LRQAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + +E+N P ++ S + GY ++ Sbjct: 269 IDIVRELGVVGGCNVQLALDPYSENYYVIEVN--PRVSRSS--ALASKATGYPIAKVTSK 324 Query: 292 M--------VEDASCLR 300 + +E+A + Sbjct: 325 IAVGYNLDEIENAVTKK 341 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 90/291 (30%), Gaps = 30/291 (10%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C AL++ G++ I D+ V V+ KP+ G Sbjct: 577 CVWALKEMGYETIIINNNPETVSTDFDISDKLYFEPLTVEDVLNVIDKEKPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I + + A ++ P ++ + + Sbjct: 637 QTAINLAGPLSRAGVKILGSSVDSIDRAEDRERFDELLTSCDIPRPQGHTVFDTEGALVA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + P +++P + ++ D + + + + +L++ Y+ G E+ Sbjct: 697 AHKVGYPTMVRPSYVLGGRAMEIVYNDDELRNYMTYAVKASREHPVLVDHYLQGTEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + + + + + Sbjct: 757 AICDGKEVLIPGIMEHVERAG---VHSGDSIAVYPPRSLSESVIRTIIEYTNKMALGLEV 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ ++ V+ +E+N + T P ++ G S ++ Sbjct: 814 KGMINIQYIV--RDEHVYVIEVNPRSSRT----VPFLSKITGISMVDVATR 858 >gi|320355375|ref|YP_004196714.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus propionicus DSM 2032] gi|320123877|gb|ADW19423.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus propionicus DSM 2032] Length = 1068 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 99/299 (33%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV ++ ++A +PD Sbjct: 29 SGTQACKALRELGYRIVLVNSNPATIMTDPGMADVTYIEPLNVDTLEKIIARERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G D ILE + + A D++ K+ + G+ + S Sbjct: 89 NLGGQSALNLSSDLARLGILEKYGVQVIGVNLEAIERGEDRIEFKKEMDRLGIEMPRSTA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G ++ + + + + + Q+L+E+ Sbjct: 149 VYSVEDAERIAAELGYPVVIRPAYTMGGTGGGMVYNLEELRTVATRGIAASRIGQILVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G E D L + +P ++ + + Sbjct: 209 CVIGWEELELEVVRDADNRLITVCFIENIDPMGVHTGDSFCAAPMLTVPV----ELQQRL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 QR A+ ++IG G + F DP++ +V +EIN + T S + G+ Sbjct: 265 QRAAYAIVESIGVIGGTNVQFAHDPVTDRVVVIEINPR---TSRSS-ALASKATGFPIA 319 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V + KP G Sbjct: 581 ALRDMGYETVMVNCNPETVSTDYDTSDKLYFEPLTVEDVLQIYQKEKPRGVICQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T ++ A D + + + Sbjct: 641 LNIARQLEEAGVTILGTPPAVIDMAEDRDLFNRMMEKLGIPMAAGGMAVNEEEAVAIAGQ 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + + + +LI++Y++ Sbjct: 701 IGYPLMVRPSYVLGGRGMEIVYDEPMLRDYMAAAVDVTPDRPILIDRYLEN---AIEAEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRG 242 DA D T+ VP + + S +S V+P + + ++ + +G G Sbjct: 758 DAIADGTDAFVPAVMEHIEQAGIHSGDSACVIPPVGIPEHHIATIREYTRTIAREMGVVG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + +V+ LE N + T P ++ G + ++ Sbjct: 818 LMNIQYAIC--DDRVYVLEANPRASRT----VPLVSKVCGIPMARIATEIL 862 >gi|157363234|ref|YP_001470001.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae TMO] gi|167006452|sp|A8F453|CARB_THELT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|157313838|gb|ABV32937.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae TMO] Length = 1105 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 89/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ G++V I D + S + V+ +PD Sbjct: 29 SGAQAIKALKSLGYRVVVINSNSATIMTDPEFSDAVYIEPLTIDFLEAVIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L ++ + D+ + K + +CG+ V S Sbjct: 89 TLGGQTALNLAVELFKKGVLCKYDVELIGVKPDTIEKAEDREQFKTAMKNCGLEVLESRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + MD P VI+P G + Q + + + +LIE+ Sbjct: 149 VSSVTEAMDVVREFGYPVVIRPSFTLGGSGGGIAYNLQELKAIVENGLIESPAHTVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + +F + + ++ Sbjct: 209 SVIGWKEYELEVMKDHEDNFIVVCSIENFDPMGIHTGDSVTVAPAQTLTDVEYQCMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G F D + K+ +E+N P ++ S + GY ++ Sbjct: 269 RKALSAIGFDAGGCNIQFAVDTYTGKLVIIEMN--PRVSRSS--ALASKATGYPIAKI 322 Score = 42.9 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 95/291 (32%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++V + D+ + + PD G Sbjct: 576 AFQEEGYEVIMVNSNPETVSTDYDISDKLYFEPLTTEDILEIAKIENPDGIVVSFGGQTP 635 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 E L+I + ++ S D+ S VP + + + L Sbjct: 636 LRIARALEKEGLKILAANYELIDLTESRDRFAKFLKQSGLSVPPFSVARSIKEALRAAEL 695 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +I+P + ++ + + + +S + L+I+++++ + Sbjct: 696 IGFPVLIRPSYVLGGRAMAIVDHKKDLLSYISNASLISPDHPLIIDKFLEN---AVELDV 752 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D D + + + S +S VLP D+ ++++ L + +++ G Sbjct: 753 DVISDGENVWIAGLMEQIEKAGIHSGDSACVLPPVSLSDDLIEKIEHLIYRLIKSLKIIG 812 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + KV+ +E+N + P ++ G ++ + Sbjct: 813 PANIQLAV--KDDKVYVIELN----LRASRTIPFVSKAIGIPVAKIAAKTI 857 >gi|148263921|ref|YP_001230627.1| carbamoyl-phosphate synthase, large subunit [Geobacter uraniireducens Rf4] gi|146397421|gb|ABQ26054.1| carbamoyl-phosphate synthase large subunit [Geobacter uraniireducens Rf4] Length = 1082 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + + +++ +PD Sbjct: 29 SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADRTYIEPVTPEILAMIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V +LE + + + A ++ D+ K+ + + V S Sbjct: 89 TLGGQTALNTAVAVAESGVLEKYGVELIGAKLPAIKMAEDRTLFKEAMQRINLTVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M+ I P +I+P G + + + + ++LIE+ Sbjct: 149 AHNHAEAMEIIKEIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSVAGIEASPTSEILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L L + N++ G Sbjct: 598 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLNIVELEKPEGVIVQFGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + Sbjct: 658 LKLAVSLEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADR 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I +I E++R + + RG Sbjct: 778 CDGTEAVIGGIMEHIEEAGIHSG---DSACSLPPYSISREIADEIRRQTKMMALELNVRG 834 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + ++ LE+N + T P ++ G +L + Sbjct: 835 LMNVQYAI--KDDVIYILEVNPRASRTA----PFVSKATGRPLAKLAARI 878 >gi|284006380|emb|CBA71616.1| carbamoyl-phosphate synthase large chain [Arsenophonus nasoniae] Length = 1074 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPIQWEVVRKIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L + + A + D+ R + + G+ S + Sbjct: 89 TMGGQTALNCALELERKGVLNEFAVTMIGATADAIDKAEDRQRFDKAMKKIGLETARSGI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + L + ++LLI++ Sbjct: 149 AHSLEEALEVVEKVGFPCIIRPSFTMGGSGGGIAYNREEFEDICLTGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENVDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P + ++ +E+N P ++ S FP A Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AVGYTLDELMNDI 339 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P+ G Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPEGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ ++ H Sbjct: 648 LKLALALEEAGVPIIGTSPDAIDRAEDRERFQQAVARLGLKQPENATVTTIEQAIEKAHS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + S ++ +L++ ++D IE+ + Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDHFLDDAIEVDVDAI 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + +I ++ + RG Sbjct: 768 CDGETVLIGGIMEHIEQAG---VHSGDSACSLPPYTLSQNIQNVMREQVKKLAFELRVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G + ++ Sbjct: 825 LVNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIALAKVAAR 867 >gi|291279606|ref|YP_003496441.1| carbamoylphosphate synthase large subunit [Deferribacter desulfuricans SSM1] gi|290754308|dbj|BAI80685.1| carbamoylphosphate synthase, large subunit [Deferribacter desulfuricans SSM1] Length = 1075 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGSQAVKALKEEGYRVVLVNSNPATIMTDPEFADATYIEPLTVEIVEKIIKKEQPDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D +LE + + I A + D+ K+ ++ G+ + Sbjct: 89 TVGGQTALNLAIDLHKARVLEKYNVELIGAKIDAIQKAEDRELFKKAMAKIGLDMPKSAY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M I P +I+P G V + ++ + +++L+E+ Sbjct: 149 VNSYDEAMKVIKDIGFPAIIRPSFTLGGTGGNVAYNMEEYREYVIWGLEASPVNEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEIELEVMRDLKDNVVIICGIENFDPMGVHTGDSITVAPIQTLTDKEYQYLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 IKVIREIGVDTGGSNVQFAVDPKTGRQVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 101/286 (35%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL + G++ + D D S L L + N++ +VQ Sbjct: 587 ALREVGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMNIIEKENPYGVIVQFGGQTP 646 Query: 72 ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123 LE + + + ++ D+ R ++++ + + ++ Sbjct: 647 LKLAVPLEKAGVNILGTSPDSIDIAEDRERFQKLLKDINLKQPDNGIAKNFEEALNIAEN 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ S+ + + + +LI+++++ IE+ + Sbjct: 707 IGYPVVVRPSYVLGGRAMEIVYDQDSLKNYMKYAVEASEEHPVLIDKFLENAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P + +I +E++R + + +G Sbjct: 767 SDGESTIVAGIMQHIEEAGIHSG---DSACSIPPRSLSDEIIEEIKRATISLAEKLNVKG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + +++ LE+N + T P ++ G S +L Sbjct: 824 LMNVQYAI--KDNQLYVLEVNPRASRT----VPYVSKSIGKSLAKL 863 >gi|212702278|ref|ZP_03310406.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098] gi|212674271|gb|EEB34754.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098] Length = 1105 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D +++ ++ +PD Sbjct: 54 SGSQAVKALKEEGYEVVLVNSNPATIMTDPHMADATYIEPIEQQTLAAIIRKERPDALLP 113 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +L + + + + +Q + + G+ V S + Sbjct: 114 TLGGQTALNAALGLAKSGVLAECGVELIGARAEVIEKAESRELFRQAMENIGLKVPASGI 173 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ P +I+P G + + S + +++IEQ Sbjct: 174 AHNMDEVRALGDVLPFPLIIRPAFTLGGTGGGIAYNMADLEEVAGHGLSASPVSEVMIEQ 233 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 234 SVLGWKEFEMEVMRDKNDNCVIVCSIENVDAMGVHTGDSITVAPAQTLTDAEYQMMRDAS 293 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ +L Sbjct: 294 FAIMREIGVETGGSNVQFGINPDNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKLAA 349 Query: 291 WM 292 + Sbjct: 350 KL 351 Score = 43.3 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 84/261 (32%), Gaps = 13/261 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ G + V + + I T + Sbjct: 643 DRLYFEPLTF---EDVMNIVEKEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 699 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + + ++ I+ P V++P + V+ Sbjct: 700 RAEDRERFQALIEKLGLLQPPNGTAMDLDQALEVAERITYPVVVRPSYVLGGRAMAVVYD 759 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +LI+++++ V DA D E+ V + E Sbjct: 760 KEELVDYFREQVPEKPEHPILIDKFLE---HAVEVDVDALSDGKEVYVAGIMEHIEEAGI 816 Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP+ D + A + + G+ F ++ LE+N + Sbjct: 817 HSGDSACVLPSFSLSYDHVALIAAQAEALARELKVVGLMNIQFAI--KGDDLYILEVNPR 874 Query: 266 PGMTPVSIFPEMAAYAGYSFR 286 T P ++ G Sbjct: 875 ASRTA----PFVSKATGVPLP 891 >gi|89893144|ref|YP_516631.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium hafniense Y51] gi|89332592|dbj|BAE82187.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1075 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 107/303 (35%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + + ++ +PD Sbjct: 29 SGTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + + +L+ + + A D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLSSELAKAGVLDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSP 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G ++ + + + + S + Q+L+E+ Sbjct: 149 AYTVEEAEKIAQELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + + + + + + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPM-LTISQELQERLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +AI G + F DP + +V +EIN + T S + G+ L+ Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322 Query: 291 WMV 293 ++ Sbjct: 323 SLL 325 Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ I D D V + +P A G Sbjct: 580 ALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKERPIGAIVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T ++ A D+ R + +P + + + Sbjct: 640 LNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEM 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ ++ + + + +LI+++++ Sbjct: 700 IGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLEN---AIEAEA 756 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S V+P D + + + Q + G Sbjct: 757 DAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + KV+ LE N + T P ++ L ++ Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKICNTPMARLATELI 861 >gi|113969310|ref|YP_733103.1| carbamoyl phosphate synthase large subunit [Shewanella sp. MR-4] gi|114046510|ref|YP_737060.1| carbamoyl phosphate synthase large subunit [Shewanella sp. MR-7] gi|113883994|gb|ABI38046.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. MR-4] gi|113887952|gb|ABI42003.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. MR-7] Length = 1074 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+ P +I+P G + + Q + +LLI++ Sbjct: 149 AHSMEEAYGVLDLVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + I E++ +G G Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVRKLAMELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|117919417|ref|YP_868609.1| carbamoyl phosphate synthase large subunit [Shewanella sp. ANA-3] gi|117611749|gb|ABK47203.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. ANA-3] Length = 1074 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 L+ P +I+P G + + Q + +LLI++ Sbjct: 149 AHSMEEAYGVLDLVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + I E++ +G G Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVRKLAMELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|309389735|gb|ADO77615.1| carbamoyl-phosphate synthase large subunit [Halanaerobium praevalens DSM 2228] Length = 1071 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + S+ +L PD Sbjct: 29 SGSQACRALKEEGLEVVLVNSNPATIMTDENMADRVYIEPLTVASIIEILKQENPDGIIP 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + + E+ T + A + + + + Sbjct: 89 TLGGQIALNLAIDLAKTNILKELNIELLGTPIETIKRAEDRNTFKELMNEIGEPILASKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G V + + + + Q+LIE+ Sbjct: 149 AENIEEAAAIAADIGYPVIVRPAYTMGGTGGGVANNLEELKEITARGFKHSLIGQVLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + Y+ + Sbjct: 209 SIKGW-KEIEYEVMRDANNNCIVVCNMENFDPVGVHTGDSIVVAPSQTLTDKEYQMFRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+G G + DP S + + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALGIEGGCNVQYALDPESFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVSA 323 Query: 291 WM 292 + Sbjct: 324 RI 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 93/294 (31%), Gaps = 32/294 (10%) Query: 21 ACASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 + SA L AG++ ++ + ++ + KP+ Sbjct: 578 SVHSAWTLNQAGYESIIVNNNPETVSTDFDTADRLYFEPLTKEDLMQIIENEKPEGVICQ 637 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 G + + I T + A D+ VP Sbjct: 638 FGGQTAVNLAEPLAEAGVNILGTSVDSIDLAEDRDRFIGLLNKLKIPVPAGKVAANLNEA 697 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I+ P +++P + V+ +Q + + + + +L+++Y+ G E+ Sbjct: 698 EKIAAEIAYPVLVRPSYVLGGRAMEVVYNEQELADYMKNAVKVSPDRPVLVDKYLTGTEI 757 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S + P ++ ++ + + +A Sbjct: 758 EIDAVSDGETVIVPGIMEHVERAG---VHSGDSIAVYPPHRLGEELKAKAVKYTEKIARA 814 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G+ ++ + ++F +E+N + T P ++ G +L Sbjct: 815 LKIKGVINIQYVV--SNGEIFVIEVNPRSSRT----IPYLSKVTGVPMVDLATK 862 >gi|253997072|ref|YP_003049136.1| carbamoyl-phosphate synthase large subunit [Methylotenera mobilis JLW8] gi|253983751|gb|ACT48609.1| carbamoyl-phosphate synthase, large subunit [Methylotenera mobilis JLW8] Length = 1067 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLDKHGVLAKFNVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + ++LLIE+ Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFITICERGLDASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 11/265 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A KP G + I T + Sbjct: 608 DRLYFEPVTL---EDVLEIVALEKPVGVIVQYGGQTPLKLARDLEKAGVPIIGTTPDAID 664 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + I P V++P + ++++ Sbjct: 665 MAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLATEIGYPLVVRPSYVLGGRAMEIVQE 724 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ ++ +L++++++ +V + + + Sbjct: 725 QSQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEEVIIGGIMEHVEQAGVHSG 784 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S S P + + E++ +A+G G+ F V+ LE+N + Sbjct: 785 DSACSLP--PYSLSAALQDELRVQTKQMAKALGVVGLMNVQFAI--QGETVYVLEVNPRA 840 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 841 SRT----VPFVSKACGLQLAKVAAR 861 >gi|124008778|ref|ZP_01693467.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina ATCC 23134] gi|123985691|gb|EAY25571.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina ATCC 23134] Length = 963 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A +L++ G +V+ I D +S+ +L D Sbjct: 29 SGSQAARSLKEEGIEVTLINSNPATIMTDPSIADHIYLKPLNKKSIIEILEAHDIDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 + G + + E + I A + D+ R + + V + Sbjct: 89 TMGGQTALNLCIDCQKAGVWEKFNVEIIGVDINAVETTEDRERFRLRMHELGANVCKGKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G + ++ L + + + ++LIEQ Sbjct: 149 ATSFLKGKEIAQDVGFPLVIRPSYTLGGYGGGFVHSEEEFNKALTRGLTASPIHEVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S I + + + Sbjct: 209 SILGWKEFELELLRDSAGNVIIICSIENVDPMGIHTGDSITVAPAMTLSDKHYQAMRNLA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + + +EIN P ++ S + GY ++ Sbjct: 269 IKTMNGIGQFAGGCNIQFAVNPENDDIIVIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI-----------DVDRSVG----------LVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I D+ + ++ H KP+ L G Sbjct: 602 AVKEAGYEAIMINCNPETVSTDFDIADKLYFEPVFWEHIYDIILHEKPEGVIVQLGGQTA 661 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T L A + + P S+ ++ Sbjct: 662 LKLAEKLDRYNIPIIGTSYKALDLAEDRGSFSTLLKENDIPYPEFGSVSTTEGALELSKK 721 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + P +++P + ++ +Q + ++ ++ +Q+L++ ++D IE + Sbjct: 722 LDFPLLVRPSYVLGGNKMKIVINEQELEEHVVDVLNYFPDNQILLDHFLDQAIEAEADAI 781 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + P + + +++ + A+ G Sbjct: 782 CDGENVYIIGIMEHIEPAGIHSG---DSHAVLPPFSLSPLLMEKIAQYTKKIALALDTVG 838 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F V+ +E N + T P + + + Sbjct: 839 LINIQFAI--KGNDVYVIEANPRASRT----VPFICKAYKTPYINYATKI 882 >gi|304315132|ref|YP_003850279.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter marburgensis str. Marburg] gi|302588591|gb|ADL58966.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter marburgensis str. Marburg] Length = 1059 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 95/300 (31%), Gaps = 30/300 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L + G + ++ + + V ++ KPD Sbjct: 29 SGSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKIIEKEKPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + LE + + + + + D S + VP ++ Sbjct: 89 TMGGQTGLNVATGLAEIGALEGVRVIGSSIETIRNVEDRDLFDSFMKRLNEPVPAARAVN 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +++P G V + + + +Q+LI+Q V Sbjct: 149 SVEEALEAVDEIGYPVIVRPAFTLGGTGGGVAHNRDELIEIATRGLEMSFINQVLIDQSV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + T I V + ++ + + + + ++ A Sbjct: 209 LGWKEF-EYEVMRDRNDTCIIVCNMENIDPMGIHTGESVVVAPAQTLSDEDNQRLRDAAI 267 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+ G F P + + +E+N P ++ S + GY ++ + Sbjct: 268 KIIRALRIEGGCNIQFAVHPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKIAAKI 323 >gi|160900363|ref|YP_001565945.1| carbamoyl-phosphate synthase large subunit [Delftia acidovorans SPH-1] gi|160365947|gb|ABX37560.1| carbamoyl-phosphate synthase, large subunit [Delftia acidovorans SPH-1] Length = 1052 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%) Query: 21 ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59 AL + G+KV I DV ++V ++A +PD + Sbjct: 2 QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61 Query: 60 GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113 G D +L ++ + A + D+++ K ++ G+ S Sbjct: 62 GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q + P VI+P G + + + + ++LLIE+ + Sbjct: 122 MDEAWAVQKEMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G + + D I + + + + + Sbjct: 182 GWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G S F +P ++ +E+N P ++ S + G+ ++ + Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V V+A KP Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPVGVIVQY 613 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + E + I T ++ +A ++ + P + + Sbjct: 614 GGQTPLKLALGLEKEGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 673 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++ ++ + Sbjct: 674 EKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDHFLSN-AIE 732 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + + +S ++ + P + + E++R A+ Sbjct: 733 CDVDCVRDREGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKPETVAEIKRQTAAMANAL 792 Query: 239 GCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 793 SVVGLMNVQFAIKETADGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 843 >gi|291521241|emb|CBK79534.1| carbamoyl-phosphate synthase large subunit [Coprococcus catus GD/7] Length = 1074 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 100/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEEIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCAELNKAGILDKYHVKVIGVQVDAIERGEDRIEFKHAMDKLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVEEALAIADKLDYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I + K +Q Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENIDP-LGVHTGDSFCAAPMLTISEECQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP++ ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVESVEVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T ++ A D R+ +P ++ + Sbjct: 641 LNLAAELEKNGVKILGTAPAVIDLAEDRDLFRAMMEKLDIPMPESGMATTVDEALEIANK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMAGYMAAAVGVTPDRPILIDRFLN---HATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S +LP I + ++ + + RG Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACILPSVHISPENVATIKEYTRKIAEEMHVRG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ L ++ R Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDIITSELTGR 869 >gi|257869385|ref|ZP_05649038.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2] gi|257803549|gb|EEV32371.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2] Length = 1060 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELANSGILDEMEIELLGTKLAAIDQAEDRDLFKQLMEELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + Q LIE+ Sbjct: 150 STVEEAVTFATKIGYPIIVRPAFTLGGTGGGMCNNEEELRVIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + + I T L A + D + P + + + Sbjct: 639 AINLAEPLVAAGVSILGTSIEDLDRAENRDLFEQALQALAIPQPPGDTATNTTEAVAIAN 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQADLEDYMKHAVKASPEHPVLVDRYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P + ++ + C G Sbjct: 759 CDGTTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSEATIATIEDYTKRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVIHEE--KVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 860 >gi|159027682|emb|CAO89547.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1081 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIEKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ K+ + GVPVCPS + Sbjct: 89 TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N P +I+P G + + + Q+L+E Sbjct: 149 ANNLEEAKAIGHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + + Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ + Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 73/258 (28%), Gaps = 15/258 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ +P+ G V L + + ++ Sbjct: 622 KEDVLNIIEAEQPEGLIIQFGGQTPLKLAVPLQKYLESPNCPVNTKIWGTSPDSIDTAED 681 Query: 99 VVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + I + + I P V++P + ++ D + Sbjct: 682 RERFEQILRQLDIRQPANGIARSFQESQAVAKRIGYPVVVRPSYVLGGRAMEIVYSDSEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ + V + T + + +S + Sbjct: 742 ERYMKYAVQIEPDHPILIDKFLEN-AIEVDVDALSDATETVVIGGLMEHIEQAGVHSGDS 800 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + + + +++ +A+ G+ + V+ LE N + T Sbjct: 801 ACSIPHTSLSASVLTTIRQWTVELAKALKVIGLMNIQYAV--QGETVYILEANPRASRT- 857 Query: 271 VSIFPEMAAYAGYSFREL 288 P ++ G ++ Sbjct: 858 ---VPYVSKATGVPLAKV 872 >gi|52080154|ref|YP_078945.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis ATCC 14580] gi|52785531|ref|YP_091360.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis ATCC 14580] gi|319646067|ref|ZP_08000297.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2] gi|52003365|gb|AAU23307.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus licheniformis ATCC 14580] gi|52348033|gb|AAU40667.1| PyrAB [Bacillus licheniformis ATCC 14580] gi|317391817|gb|EFV72614.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2] Length = 1070 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTLEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D RS + VP I Sbjct: 90 LGGQTGLNLAVELSEHGILAECGVEVLGTKLSAIQKAEDRDLFRSLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLGEAREFVERIGFPVIVRPAYTLGGTGGGICSNEDELKEIVENGLKMSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSSDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T L A DK + P+ + ++ Sbjct: 640 INLADELAERGVAILGTSLEDLDRAEDRDKFEQTLEMLQVPQPLGKTATSVEGAVEIAAN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEAELLHYMENAVKINPQHPVLIDKYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K+++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKLEAYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVL--SKDEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860 >gi|254482510|ref|ZP_05095749.1| carbamoyl-phosphate synthase, large subunit [marine gamma proteobacterium HTCC2148] gi|214037201|gb|EEB77869.1| carbamoyl-phosphate synthase, large subunit [marine gamma proteobacterium HTCC2148] Length = 1073 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D R+V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPIEWRTVARIIEEEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + A ++ D+ + + G+ + Sbjct: 89 TMGGQTALNCALDLARHGVLAEHGVEMIGATKEAIDMAEDRQLFDKAMKRIGLDTPRASL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + ++ + ++LLI++ Sbjct: 149 AHTMEEAFQVLDSIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICMRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.5 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 30/266 (11%), Positives = 89/266 (33%), Gaps = 13/266 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A KP G + I T + Sbjct: 613 DRLYFEPVTL---EDVLEIVALEKPKGVIVQFGGQTPLKLARALEDAGVPIIGTTPDAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P ++ +++ I P V++P + ++ + Sbjct: 670 RAEDRERFQHMIQKLGLKQPANTTVRSTEEAVEAAASIGYPLVVRPSYVLGGRAMEIVYR 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + + + +L++ ++ IE+ + D V + + Sbjct: 730 EEDLLRYMKHAVQASDDAPVLLDSFLSAAIEIDIDAVSDGEEVVIGAIMQHIEQAG---V 786 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + + + +++ +G RG+ + +++ +E+N + Sbjct: 787 HSGDSACSLPPYSLDMVVQDQMREQVKQMALELGVRGLMNVQLAW--QDDEIYVIEVNPR 844 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G S ++ Sbjct: 845 ASRT----VPFVSKCIGRSLAQVAAR 866 >gi|121604677|ref|YP_982006.1| carbamoyl-phosphate synthase large subunit [Polaromonas naphthalenivorans CJ2] gi|120593646|gb|ABM37085.1| carbamoyl-phosphate synthase large subunit [Polaromonas naphthalenivorans CJ2] Length = 1080 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWRHGVLEKYSVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + +LLIE+ Sbjct: 149 AHTMDEAWSVQKTLGFPTVIRPSFTLGGTGGGIAYNPEEFEEICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 38/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A A+ + G++ + D D Sbjct: 559 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 611 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + + I T ++ +A Sbjct: 612 RLYFEPLTLEDVLEIVDKEKPFGVIVQYGGQTPLKLALDLEANGVPIIGTSPDMIDAAED 671 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + ++ + P V++P + ++ + + + Sbjct: 672 RERFQKLLHALELRQPPNATARTEPEALEKAAALGYPLVVRPSYVLGGRAMEIVHEQRDL 731 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ +H +L++++++ + C V + + +S + Sbjct: 732 ERYMREAVKVSHDSPVLLDRFLN-DAIECDVDCIRDAEGKTFIGGVMEHIEQAGVHSGDS 790 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGM 268 + + P + E++R +A+ G+ F + ++ LE+N + Sbjct: 791 ACSLPPYSLSAATVTEIKRQTAAMAEALNVVGLMNVQFAIQNIDGLDVIYVLEVNPRASR 850 Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 851 T----VPFVSKATGIQLAKVAAR 869 >gi|89900791|ref|YP_523262.1| carbamoyl-phosphate synthase large subunit [Rhodoferax ferrireducens T118] gi|89345528|gb|ABD69731.1| carbamoyl-phosphate synthase large subunit [Rhodoferax ferrireducens T118] Length = 1098 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGFKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLWHHGVLEKYNVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + + ++LLIE+ Sbjct: 149 AHSMEEAWGVQKTVGFPTVIRPSFTLGGTGGGIAYNSEEFEVICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDQADNCIIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPEDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 93/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 592 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPYGVIVQY 651 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 652 GGQTPLKLALALEANGVPIIGTSPDMIDAAEDRERFQKLLHQLGLRQPANATARTEPEAL 711 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ +H +L++++++ + Sbjct: 712 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLN-DAIE 770 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + + E++R +A+ Sbjct: 771 CDVDCVRDAQGQTFIGGVMEHIEQAGVHSGDSACSLPPYSLCAETVTEIRRQTAAMAEAL 830 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F L +F LE+N + T P ++ G ++ Sbjct: 831 NVVGLMNVQFAIQTLEGADVIFVLEVNPRASRT----VPFVSKATGVQLAKVAAR 881 >gi|326204298|ref|ZP_08194157.1| carbamoyl-phosphate synthase, large subunit [Clostridium papyrosolvens DSM 2782] gi|325985573|gb|EGD46410.1| carbamoyl-phosphate synthase, large subunit [Clostridium papyrosolvens DSM 2782] Length = 1070 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 89/252 (35%), Gaps = 8/252 (3%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 V ++ KP G + E + I T + A DK Sbjct: 622 VLDIIEKEKPLGVIVQFGGQTAINLAETLHQEGVNILGTSVHSIDVAEDRDKFLKLLESL 681 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +P + + + + + I P +++P + ++ D+++ + +S + Sbjct: 682 DIPIPEGNTAFSFQHSKEIANKIGYPVLVRPSYVLGGRAMEIVYNDKTLEEYITMASEIS 741 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +LI++YV G E+ + D + + + + +S + P + Sbjct: 742 SEHPILIDKYVVGKEMEVDGICDENEVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSQ 798 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 + ++ +A+ +G+ F+ D + KV+ +E+N + T P M+ Sbjct: 799 KVKDTIEDYTIRLAKAMKVKGLFNIQFVMD-SNEKVYVIEVNPRASRT----VPIMSKIT 853 Query: 282 GYSFRELLLWMV 293 G + ++ Sbjct: 854 GIPMVGVATKLI 865 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G +V I+ + V ++ KPD Sbjct: 29 SGTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKIIYKEKPDGILA 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A + + V Sbjct: 89 SLGGQTGLNMAVELAEDGIIDELNIELLGTSLSSIKKAEDRELFKETMQEIDEKVAPSKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +I+P G + + + + Q+L+EQ Sbjct: 149 VTTMQDAIDFAEEIGFPIIIRPAYTLGGSGGGIANTMEEFKYICGKGLKLSMISQVLLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + I + + + ++ + + Y+ ++ Sbjct: 209 SVAGW-KEIEYEVMRDSNDNCIIICNMENFDPVGVHTGDSIVVAPSQTLSDVEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ +G F +P S + +E+N P ++ S + GY + Sbjct: 268 SIKIIRALDIKGGCNIQFALNPDSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVTA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|291540328|emb|CBL13439.1| urea carboxylase [Roseburia intestinalis XB6B4] Length = 1193 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + ++ + PA ++ +++ A + Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +FL+D + ++LE+N + G+T G +L+ WMV++ Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|291537094|emb|CBL10206.1| urea carboxylase [Roseburia intestinalis M50/1] Length = 1193 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + ++ + PA ++ +++ A + Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +FL+D + ++LE+N + G+T G +L+ WMV++ Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|240144639|ref|ZP_04743240.1| urea carboxylase [Roseburia intestinalis L1-82] gi|257203356|gb|EEV01641.1| urea carboxylase [Roseburia intestinalis L1-82] Length = 1193 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + ++ + PA ++ +++ A + Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +FL+D + ++LE+N + G+T G +L+ WMV++ Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|34499257|ref|NP_903472.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum ATCC 12472] gi|34105108|gb|AAQ61464.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum ATCC 12472] Length = 1069 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D D V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWPVVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ R K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLIEQ Sbjct: 149 CHTMEESLEAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFATNPATGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 96/299 (32%), Gaps = 38/299 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------ 58 +AL ++GF+ + D D S L L + + Sbjct: 577 VHAALSLRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEICRVEKPFGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T ++ +A ++ + P + M Sbjct: 637 GGQTPLKLARALEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPAEAM 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ ++ +L++++ D IE+ Sbjct: 697 KLADEIGYPLVVRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEV 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + + E++R +A Sbjct: 757 DVDCVSDGEQVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPALQDEIRRQTEAMARA 813 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE---MAAY-AGYSFRE 287 + G+ F ++ LE+N P ++ V+ P A AG S E Sbjct: 814 LNVVGLMNVQFAI--QGDTIYVLEVNPRASRTVPFVSKVTSAPLAKIAARAMAGISLAE 870 >gi|297379935|gb|ADI34822.1| D-alanine--D-alanine ligase [Helicobacter pylori v225d] Length = 296 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 10/228 (4%) Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L N++HG GEDG + ++LE I + I AS LS +K +K GV +L Sbjct: 39 LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKALDHVL 98 Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +N + + P++IKP GSSLG+ V+K+++ + L + + ++LIE Sbjct: 99 LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYALDGAF--EYSKEVLIE 156 Query: 170 QYVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226 ++ G++ G + + P + + S + P + ++ Sbjct: 157 PFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFLDFKQKYLDFSRNKAPKANLSNALEEQ 216 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 ++ + + + R DF +V+ EIN PG +F Sbjct: 217 LKENFKKLYNDLFDGALIRCDFFVIE--NEVYLNEINPIPGSLANYLF 262 >gi|74317146|ref|YP_314886.1| carbamoyl-phosphate synthase large subunit [Thiobacillus denitrificans ATCC 25259] gi|74056641|gb|AAZ97081.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Thiobacillus denitrificans ATCC 25259] Length = 1068 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G+KV + D D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWQIVEKIIAKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYGVEMIGASKDAIDKAEDREKFKAAMTKLGLGSARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + + +LLIE+ Sbjct: 149 AHSMEEALQVQAALGFPTIIRPSFTMGGSGGGIAYNKDEFVAICERGLEASPTHELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I +F + + + Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 582 ALRENGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVRIEKPFGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ +A ++ + P + + Sbjct: 642 LKLARDLERNGVPIIGTSPDMIDAAEDRERFQQMLHDLGLKQPPNRTARDPESALRMAAE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + +++++ + + ++ ++ +L++++ D IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVREEADLVRYMTEAVKVSNKSPVLLDRFLNDAIEVDVDAL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + + E++R +A+ G Sbjct: 762 SDGEQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLADALQDELRRQTVAMAKALKVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAI--QGDTVYVLEVNPRASRT----VPYVSKAIGAPLAKIAAR 861 >gi|242279639|ref|YP_002991768.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio salexigens DSM 2638] gi|242122533|gb|ACS80229.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio salexigens DSM 2638] Length = 1077 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + ++ ++ +PD Sbjct: 29 SGTQALKALKEEGYEVILVNSNPATIMTDPVLADRTYIEPIEPGTIAKIIEKERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G V + L + G + + R + + P Sbjct: 89 TLGGQTALNTALAVAEMGVLDKFGVELIGASVDVIEKAESRELFRAAMEKIGLKVPTSRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 IS P +I+P G V + + +Q S + +++++E+ Sbjct: 149 ARNIDDVRRCGKEISFPIIIRPAFTLGGTGGGVAYNMEDLEDIAMQGISASLQNEVMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + ++ Sbjct: 209 SILGWKEYELEVMRDRKDNCVIICSIENIDPMGVHTGDSITVAPAQTLTDVEYQMLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVETGGSNVQFAINPENGELAIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 84/253 (33%), Gaps = 10/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KP+ G + + + + I T + A ++ ++ Sbjct: 628 EDVLNIIEFEKPEGVIVQFGGQTPLNLAIPLLKAGVNILGTSPDAIDRAEDRERFQALLK 687 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + + + P V++P G+ ++ D+ +++ Sbjct: 688 KLDLKQPPNGTAMSLEDAKAIAERLDYPLVLRPSYVLGGRGMDIVYSDEEFDSYFREAAV 747 Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +LI+++++ +E+ + D + + ++ + P Sbjct: 748 VSPEHPILIDKFLENAVEVDVDALADGEQTYVAGVMEHIEEAGIHSG---DSACVLPPHT 804 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + +I KE++R + + G+ F ++ +E+N + T P ++ Sbjct: 805 LSDEIVKEIERQTVALAEELEVVGLMNIQFAV--KDGDIYIIEVNPRASRT----VPFVS 858 Query: 279 AYAGYSFRELLLW 291 G ++ Sbjct: 859 KATGIQLAKMATK 871 >gi|210634645|ref|ZP_03298197.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279] gi|210158717|gb|EEA89688.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279] Length = 1091 Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 93/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V ++ + + V+ +PD Sbjct: 29 SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITAEFIERVIERERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + V+ +LE + + A D+ V Sbjct: 89 TLGGQTGLNAAVELARAGVLETYGVEMIGCDLDAIERGEDRKLFNEAMAEIGLEVARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P V++P G + + + + Q + ++L+E+ Sbjct: 149 AYSVEDALNIVETTGYPCVLRPSFTMGGAGGGIAHDEAELIEIVTQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I + + + L+ + Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRVAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 79/273 (28%), Gaps = 13/273 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ +P L G + + I T + Sbjct: 627 DRLYFEPVTY---EDVMDIVDAERPAGVITTLGGQTPVNLTRALAESGVTIMGTQPDAID 683 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P I P +++P G+++ Sbjct: 684 FAEDRERFSALLDRLGVMYPPAGMATSFEEAEAVAARIGYPLLVRPSYVLGGRGMMIAYD 743 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + +++ + + ++++++G + D + + Sbjct: 744 AEHLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGEEVYIGGILEHIEEAGIHSG 803 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++T + P + ++ A+G RG+ + ++ +E N + Sbjct: 804 ---DSATCIPPFSFSDSLMARLRETTRKIALALGVRGLVNVQYAI--KGETIYVIEANPR 858 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 T P ++ G ++ AS Sbjct: 859 ASRT----VPFISKATGVPLARCAARIMAGASI 887 >gi|310779987|ref|YP_003968319.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus DSM 2926] gi|309749310|gb|ADO83971.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus DSM 2926] Length = 1069 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 96/291 (32%), Gaps = 32/291 (10%) Query: 23 ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61 AL+ G + I+ + V ++ +P+ G Sbjct: 580 IKALQKMGIETIIINNNPETVSTDFSTADKLYFEPLITEDVMNIIEKEQPEGVVLQFGGQ 639 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 ++I T + + A ++ + P ++ ++ Sbjct: 640 TAIKLANDLAAAGVKIIGTSADKIDEAEDRERFEAMMEKLDIKRPKGRAVWKIEPGIEIA 699 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P G+ + + ++ L S + + +LI++Y++GIE+ Sbjct: 700 NSVGYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPENPVLIDKYLNGIEIEIDA 759 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240 + D + P + S +S V P+K + ++ A + + Sbjct: 760 ICDGEDVLI----PGIMEHLERAGVHSGDSITVYPSKNLYEGTEVKILDYAKKIAKELEI 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ G EL Sbjct: 816 SGMMNIQFI--AFENEIYVIEVNPRSSRT----VPYISKVTGVPMIELATK 860 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V I+ + V V+ +PD Sbjct: 28 SGTQACEALKQEGIEVVLINSNPATIMTDRAVADRIYIEPITIEFVEKVIKKERPDSILA 87 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + V+ +++ T + D R Sbjct: 88 GMGGQTALNIAVELYDSGILDKYNVKVIGTPIDSIKRGEDRDLFRDAMKKIGEPTIESKI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ I P V++P G + Q + LL+ + Q+L+E+ Sbjct: 148 VENLKDGLEFAAQIGYPLVVRPAYTLGGSGGGIANDPQELEDILLKGLKLSRVGQVLVEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + Y+ ++ Sbjct: 208 SILGW-KEVEYEVIRDENGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRTS 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + IG G F P S K +EIN P ++ S + GY + Sbjct: 267 SIKIINEIGVIGGCNVQFALHPKSFKYAIIEIN--PRVSRSS--ALASKATGYPIARVAT 322 Query: 291 WM 292 + Sbjct: 323 KL 324 >gi|296328096|ref|ZP_06870629.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154767|gb|EFG95551.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1058 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + +++ Q L+E+ Sbjct: 150 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|145589201|ref|YP_001155798.1| carbamoyl phosphate synthase large subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047607|gb|ABP34234.1| carbamoyl-phosphate synthase large subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1087 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL D G+KV + DV V ++A KPD Sbjct: 29 SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIAAEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLEKYGCELIGASPEAIDKAEDRQKFKNAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAHEVQQHIQQETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P+ ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKIAAKL 333 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 94/296 (31%), Gaps = 33/296 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL D G++ + D D V ++A KP Sbjct: 587 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAKEKPKGVIVQY 646 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 647 GGQTPLKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEEEAL 706 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ +H +L++++ D IE Sbjct: 707 KLAEEIGYPLVVRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 766 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + +E++R + Sbjct: 767 DVDCISDGTKVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSDATVEEIKRQTAAMAKG 823 Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F + + ++ LE+N + T P ++ G ++ Sbjct: 824 LHVIGLMNVQFAIQNVDGQDVIYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 875 >gi|19713902|gb|AAL94625.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1063 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 35 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 94 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 95 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 154 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + +++ Q L+E+ Sbjct: 155 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 214 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + + ++ ++ Sbjct: 215 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 273 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 274 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 329 Query: 292 M 292 + Sbjct: 330 I 330 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 585 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 645 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 705 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 765 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 821 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 822 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 865 >gi|161485660|ref|NP_603326.2| carbamoyl phosphate synthase large subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22095500|sp|Q8RG86|CARB_FUSNN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1058 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + +++ Q L+E+ Sbjct: 150 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|315928272|gb|EFV07588.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 257 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 5/222 (2%) Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 N++HG GEDG + A+ E I + + AS LS +K +K S GV ++ Sbjct: 2 INLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILR 61 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYV 172 + + +S P +IKP + GSS+GI ++K ++ + +++ + Sbjct: 62 KNQNSKE-KLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIK 120 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 + C + + + E K + S ++ A + ++ ++++ Sbjct: 121 EYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFK 180 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 + + + R DF +++ EIN PG +F Sbjct: 181 KIYNPLFKGALIRCDFFIL--DNEIYLNEINPNPGSLANYLF 220 >gi|322419241|ref|YP_004198464.1| carbamoyl-phosphate synthase large subunit [Geobacter sp. M18] gi|320125628|gb|ADW13188.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M18] Length = 1082 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + ++ +PD Sbjct: 29 SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADATYIEPVTPEVLAAIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V LE + + + A ++ D+ K+ + G+ + S Sbjct: 89 TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKMAEDRTLFKEAMVRIGLDIPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +MD + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYQESMDVIKHVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + + + Sbjct: 209 SLIGWKEYELEVMRDTADNVVIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L L + N++ G Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEEAEAVAER 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I +I +E++R + + +G Sbjct: 778 CDGKVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISPEIVEEIRRQTKVMALELNVKG 834 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + + ++ +E+N + T P ++ G ++ Sbjct: 835 LMNVQYAV--KNDDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877 >gi|91775132|ref|YP_544888.1| carbamoyl-phosphate synthase large subunit [Methylobacillus flagellatus KT] gi|91709119|gb|ABE49047.1| carbamoyl-phosphate synthase large subunit [Methylobacillus flagellatus KT] Length = 1068 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G++V + D D + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPVTWQMVEKIIAIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYHVELIGASKEAIDKAEDREKFKAAMTKIGLGSARSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFMTICERGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSQDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 86/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A KP+ G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPEGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELDLKQPPNRTARTPEEAIRLAQE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + ++ ++ +L++++++ Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 DV + + + S S P + + E++ +A+G G+ Sbjct: 762 SDGEDVIIGGIMEHVEQAGVHSGDSACSLP--PYSLSPAMQDELREQTVKMAKALGVVGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F V+ LE+N + T P ++ G ++ Sbjct: 820 MNVQFAI--QGETVYVLEVNPRASRT----VPFVSKACGLQLAKIAAR 861 >gi|224371825|ref|YP_002605989.1| CarB2 [Desulfobacterium autotrophicum HRM2] gi|223694542|gb|ACN17825.1| CarB2 [Desulfobacterium autotrophicum HRM2] Length = 1074 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + ++ ++ +PD Sbjct: 29 SGTQACKALKEEGYEVILVNSNPATIMTDPETADRTYIEPVTPETLAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + V +LE + + + A + D+ R +P Sbjct: 89 TLGGQTGLNTAVEAANMGVLERYNVEMIGASLEAINKAEDRELFRDAMNKIGLRIPESGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G V + + + Q+++E+ Sbjct: 149 AHNMAEVETISARIGFPIIVRPSFTLGGTGGGVAYNPEELADLAKSGLDASMITQVMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + I + + + + + Sbjct: 209 SVLGWKEYELEVMRDHAGNVVIVCSIENIDAMGVHTGDSLTVAPAQTLSDKEYQVLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMQEIGVDTGGSNVQFAINPENGEMIIVEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 83/289 (28%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + + D D V ++ KP G Sbjct: 587 ALREEGVESIMVNSNPETVSTDYDTSDKLYFEPLTREDVLHIVEKEKPFGVIVQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + A D+ + P + Sbjct: 647 LNLAMDLERAGVPIIGTSPDSIDRAEDRDRFQEMLDKLGIAQPANGIAVNIEEAYAVAEK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + +LI+Q+++ Sbjct: 707 IGYPVMVRPSFVLGGRAMKIVYDRSALEEYFNLAVLASPDHPVLIDQFLEDAFELDVDAI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIGCRG 242 + + + E S +S VLP ++ + A + + +G Sbjct: 767 SDGENTVIGGM---MEHIEEAGIHSGDSACVLPPYSISKVHIDEMTEAAKALAKELKVKG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + KV+ +E+N + T P ++ G +L Sbjct: 824 LMNIQFGI--MDDKVYVIEVNPRASRT----IPFVSKATGVPLAKLATK 866 >gi|86607714|ref|YP_476476.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556256|gb|ABD01213.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1082 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D V ++ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPSMAERTYIEPVTVDFVAKIIERERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + V Q ILE + + A + D+ KQ + G+ V S Sbjct: 89 TMGGQTALNVAVQLAQQGILEQYGVELIGAKREAIEKAEDRDLFKQAMQRIGLAVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + + Q+L+E+ Sbjct: 149 AHTLEEAKQIAQEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENMDPMGVHTGDSITVAPAQTLTDKEYQRLRDYA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAVNPANGEVRVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 84/284 (29%), Gaps = 28/284 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL G++ + D D + L L + N++ G Sbjct: 585 ALSRLGYEAIMVNSNPETVSTDYDTADRLYFEPLTHEEVMNLVDAEQPVGLIVQFGGQTP 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I T + A + P +++ Sbjct: 645 LKLAQGLAAAQAPIWGTSPDSIDIAEDRGRFERILRELDIRQPANGIARSVEESLEIARR 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + + + + +L++Q+++ + V Sbjct: 705 IGYPVVVRPSYVLGGRAMEIVYSDQDLQRYMQLAVAVDPDRPVLVDQFLE-EAVEVDVDA 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + +S ++ + + ++ + ++ QA+ G+ Sbjct: 764 IADRTGAVTIGGILEHIEQAGIHSGDSACVLPSRTLSPEVLRVIREWTVKLAQALKVVGL 823 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + +V+ LE N + T P ++ G+ + Sbjct: 824 INVQYAV--QKGQVYILEANPRASRT----VPFVSKAIGHPLAD 861 >gi|222099079|ref|YP_002533647.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359] gi|221571469|gb|ACM22281.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359] Length = 137 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%) Query: 197 SDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 YE K+ + + PA++P + K + + + CR R D+ D Sbjct: 29 PRICGYEAKWLPDSPYWNIKSVPAQLPEETEKFIIECCLKLFERLECRDYCRFDWRLDAE 88 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 LE+N PG +MA AG S+ E+L +++ A Sbjct: 89 GN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYAEMLEAILKAA 130 >gi|91788540|ref|YP_549492.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666] gi|91697765|gb|ABE44594.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666] Length = 1076 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE ++ + A + D+++ K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLWHHGVLEKYKVELIGAKPEAIDKAEDRLKFKEAMTKIGLGSARSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + + + + ++LLIE+ Sbjct: 149 AHSMDEAWAVQKTVGFPTVIRPSFTLGGTGGGIAYNPEEFEVICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 580 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 640 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLRQPPNATARTEPEAL 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ +H +L++++++ + Sbjct: 700 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLN-DAIE 758 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + + E++R QA+ Sbjct: 759 CDVDCIRDDKGVTFIGGVMEHIEQAGVHSGDSACSLPPYSLRAETVTEIKRQTAAMAQAL 818 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F + K ++ LE+N + T P ++ G ++ Sbjct: 819 NVVGLMNVQFAIQNIDGKDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 869 >gi|125974372|ref|YP_001038282.1| carbamoyl-phosphate synthase large subunit [Clostridium thermocellum ATCC 27405] gi|256005549|ref|ZP_05430509.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 2360] gi|281418918|ref|ZP_06249936.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum JW20] gi|125714597|gb|ABN53089.1| carbamoyl-phosphate synthase large subunit [Clostridium thermocellum ATCC 27405] gi|255990457|gb|EEU00579.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 2360] gi|281407375|gb|EFB37635.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum JW20] gi|316941530|gb|ADU75564.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 1313] Length = 1067 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 93/291 (31%), Gaps = 29/291 (9%) Query: 24 SALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNF 62 L++ GF+ I D D S V ++ KP G Sbjct: 583 KTLKEMGFEAIIINNNPETVSTDFDTSDKLYFEPLTKECVLDIIEKEKPLGVIVQFGGQT 642 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + E + I T + A D+ + +P + Sbjct: 643 SINLAGTLAKEGVNILGTSVESIDIAEDRDRFLNLLEELGIPLPEGDTAFSYEEAKAIAQ 702 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + V+ D+++ + + +LI++Y++G E+ + Sbjct: 703 RIGYPVLVRPSYVLGGRAMEVVYNDETLKEYMQLAVGLATNHPVLIDKYIEGKEVEVDGI 762 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + + P + + + +A+ G Sbjct: 763 CDGEDVLIPGIMEHIERAG---VHSGDSISIYPPQTLDDETKNTIVDYTIRLAKALKIVG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ D S KV+ +E+N + T P M+ G ++ + Sbjct: 820 LFNIQFVIDRHS-KVYVIEVNPRASRT----VPVMSKVTGIPMVDVATKFI 865 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + V ++ KPD Sbjct: 29 SGTQACKALREEGIEVVLVNSNPATIMTDTQSADRVYIEPITLDFVKKIIRREKPDGILA 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + +Q IL+ + I + + + + D+ + VP+ Sbjct: 89 SLGGQTGLNMAIQLAEDGILDEMGIELLGTSLESIRKAEDRELFKKTMQEIGEKVPLSTI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + Q+L+EQ Sbjct: 149 ATDLDSAVKFAEEVGFPIIIRPAYTLGGTGGGIAHNMEEFKYICGKGLKLSLIHQVLLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + I +F + ++ + ++ Sbjct: 209 SVAGWKEIEYEVIRDGADNSIIICNMENFDPVGVHTGDSIVVAPCQTLSDVE-AQMLRAA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ +G + +P S + +E+N P ++ S + GY + Sbjct: 268 SLKIIRALNIKGGCNIQYALNPNSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|262276862|ref|ZP_06054655.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium HIMB114] gi|262223965|gb|EEY74424.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium HIMB114] Length = 1069 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFN 56 SG AL G+K+ + D+ D+ + ++ KPD Sbjct: 29 SGSQACKALRQEGYKIILVNSNPATIMTDPNVADITYIEPINDQVLEEIIKKEKPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + + + IL+ + + A + ++ + K+ ++ G+ S + Sbjct: 89 TMGGQTGLNAAMSLDQKGILKKYNVELIGANAEAIDNAENREKFKKNMNEIGLESARSYI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G V +Q + + +++L+E+ Sbjct: 149 CRNEEDAKEAYKNIGVPSIIRPSFTLGGTGGGVANTEQEFFQIIKNGLDLSPTNEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLVGWKEFEMEVVRDKKDNAIIVCSIENLDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 58/167 (34%), Gaps = 10/167 (5%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 I P VI+P + ++ D+ + ++ + +LI+++ D IE+ Sbjct: 707 KIGYPIVIRPSYVLGGRAMEIVHDDEQFNTYIEEAVQVSGDSPVLIDKFLNDAIEIDVDA 766 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + ++ + P + + +E+++ + + Sbjct: 767 VCDGQDVFIAGIMEHIEEAGIHSG---DSACCIPPFSLDEKLIQELKQQTTSLAKKLNVI 823 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F ++ LE+N + T P ++ ++ Sbjct: 824 GLINIQFAIRGSD--IYILEVNPRASRT----VPYVSKALNIPVAKI 864 >gi|227511346|ref|ZP_03941395.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227085396|gb|EEI20708.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus buchneri ATCC 11577] Length = 1021 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G +L + G+ V ++ + S+ +L PD Sbjct: 30 GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKEHPDAILPT 89 Query: 58 LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +E+ T + A ++ + +P ++ Sbjct: 90 LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D H I P +I+P G + D + L + + + + LIE+ Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62 C A++ AG I D S L L D NV+ Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKTMGVIVEFGG 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120 + L + + + + ++ + ++ + + Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ V+ + + L+ + + G +LI+QY+ G E Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNSEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D + + + P + + +++ +A + + Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ +E+N + T P M+ +L ++ Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861 >gi|46578579|ref|YP_009387.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120603844|ref|YP_968244.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris DP4] gi|46447990|gb|AAS94646.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120564073|gb|ABM29817.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris DP4] gi|311232504|gb|ADP85358.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris RCH1] Length = 1077 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++ +PD Sbjct: 29 SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G G + + L E G + + + R ++ + P Sbjct: 89 TLGGQTGLNTALALAASGVLDECGVELIGANRAVIEKAESRELFRLAMANIGLKVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + + +++IEQ Sbjct: 149 ARSMDDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIASRGLTASITSEVMIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + ++ Sbjct: 209 SVLGWKEYEMEVMRDKADNCVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFGINPDNGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 83/263 (31%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KPD G + V + I T + Sbjct: 618 DRLYFEPLTF---EDVMHIIEAEKPDGVIVQFGGQTPLNLAVPLQRAGVPILGTSPDAID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P +++ R + + I P V++P + ++ Sbjct: 675 RAEDRERFQALIHKLDLRQPANATVMNLRQAIAGANSIGYPVVVRPSYVLGGRAMEIVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + S +L++++++ E+ + D + + + Sbjct: 735 EEQLTSYFQNSVGEAPEHPILLDKFLENATEVDVDALSDGTDVYVAGIMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P +P I E+ R + + G+ F +F LE+N + Sbjct: 795 ---DSACSIPPYSLPSSITDEISRQTVALAKELRVVGLMNIQFAV--KDGVIFILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ L Sbjct: 850 ASRTA----PFVSKATAVPLPRL 868 >gi|317497966|ref|ZP_07956271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894719|gb|EFV16896.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA] Length = 1077 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + + ++A +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G E+ + IL+ + + + D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + Q+L+E+ Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229 + G + + L + +S P + ++ +Q Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ ++ G + F DP++ ++ +EIN + T S + G+ L+ Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 42.6 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ + AL+ GF+ + D D S Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607 Query: 43 GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L KP G + + ++I T ++ A Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D R +P ++ I P +++P G+ V+ D+S+ Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ DA D T VP + S + Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784 Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S +LP+ + + ++ + + +G+ + KV+ LE N + T Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P ++ L ++ Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862 >gi|291560089|emb|CBL38889.1| carbamoyl-phosphate synthase large subunit [butyrate-producing bacterium SSC/2] Length = 1077 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + + ++A +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G E+ + IL+ + + + D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + Q+L+E+ Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229 + G + + L + +S P + ++ +Q Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ ++ G + F DP++ ++ +EIN + T S + G+ L+ Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 42.6 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ + AL+ GF+ + D D S Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607 Query: 43 GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L KP G + + ++I T ++ A Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D R +P ++ I P +++P G+ V+ D+S+ Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ DA D T VP + S + Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784 Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S +LP+ + + ++ + + +G+ + KV+ LE N + T Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P ++ L ++ Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862 >gi|167766145|ref|ZP_02438198.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1] gi|167712225|gb|EDS22804.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1] Length = 1077 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + + ++A +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G E+ + IL+ + + + D++ K+ + G+ + S Sbjct: 89 NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + Q+L+E+ Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229 + G + + L + +S P + ++ +Q Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A+ ++ G + F DP++ ++ +EIN + T S + G+ L+ Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 42.6 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ + AL+ GF+ + D D S Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607 Query: 43 GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L KP G + + ++I T ++ A Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D R +P ++ I P +++P G+ V+ D+S+ Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ DA D T VP + S + Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784 Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S +LP+ + + ++ + + +G+ + KV+ LE N + T Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842 Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293 P ++ L ++ Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862 >gi|322817889|gb|EFZ25470.1| hypothetical protein TCSYLVIO_8369 [Trypanosoma cruzi] Length = 789 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 21/262 (8%) Query: 27 EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + +++ + +S V ++ D+ FN+ G E ++E LE Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138 S +++ P+ ++ T + P ++K L G +S Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384 Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189 +GI + ++ + + + L+E+++ G E T D + Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444 Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + D ++Y K ++ + + + G R Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNESAYSFLPHNDPAYPHIIDTARNAFRHIMNGVGYGRV 504 Query: 247 DFLFDPLSRKVFWLEINVQPGM 268 DF DP V++LEIN GM Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525 >gi|118594564|ref|ZP_01551911.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Methylophilales bacterium HTCC2181] gi|118440342|gb|EAV46969.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Methylophilales bacterium HTCC2181] Length = 1067 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + V ++ +PD Sbjct: 29 SGAQACKALTEEGYRVILVNSNPATIMTDPDLADATYIEPIQWQIVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D IL+ + + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLDKHGILKKFNVELIGASKEAIDKAEDRQKFKEAMTGIGLASARSAI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + L + + ++LLIE+ Sbjct: 149 AHSMEEAIQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFMLICERGLDASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSNDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 INILREIGVDTGGSNVQFAINPDDGRMCVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D+GF+ I D D V ++A P G Sbjct: 582 ALRDSGFETIMINCNPETVSTDYDTSDRLYFDPVTLEDVLEIVAKESPWGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 E + I T + +A ++ ++ P + + Sbjct: 642 LKLAKALEGEGVPIIGTLPDDIDAAEDRERFQNILNELKLKQPPNKTARTPEEALVLAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ +H +L++++ D +E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEKNDLERYMREAVKVSHESPVLLDRFLNDALEIDVDAI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + + K + +A+ G Sbjct: 762 SDGEDIVIGGIMEHIEQAG---VHSGDSACSLPPHTLTKIVQKMIIEQTKKMAKALNVVG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F ++ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAI--QGENIYVLEVNPRASRT----VPFVSKAIGKPLAKI 858 >gi|83644090|ref|YP_432525.1| carbamoyl phosphate synthase large subunit [Hahella chejuensis KCTC 2396] gi|83632133|gb|ABC28100.1| Carbamoylphosphate synthase large subunit [Hahella chejuensis KCTC 2396] Length = 1075 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + R+V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPINWRTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + A + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLAREGVLEQYGVEMIGATQDAIDKAEDRERFDKAMKAIGLATPRSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEALQVLDQIGFPAIIRPSFTMGGSGGGIAYNKEEFIEICERGLELSPTRELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVETGGSNVQFGMDPETGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL D G++ I D D S L + + ++H G Sbjct: 587 ALRDDGYETIMINCNPETVSTDYDTSDRLYFEPITLEDVLAIVHLEKPRGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + V P + + Sbjct: 647 LKLARGLEEAGVPIIGTTPDAIDRAEDRERFQQMVVRLGLRQPPNATARSQEEALSKAKE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P V++P + ++ + + + + ++ +L++ +++ IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEVELQRYMRDAVRVSNDSPVLLDHFLNAAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P +P D+ +++ + G Sbjct: 767 SDGEKVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPADVQDKMRETVIKMALELQVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + +++ +E+N + T P ++ G S ++ Sbjct: 824 LMNVQLAY--QDGEIYVIEVNPRASRT----VPFVSKAIGVSLAKV 863 >gi|71416962|ref|XP_810430.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874959|gb|EAN88579.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 789 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 21/262 (8%) Query: 27 EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + +++ + +S V ++ D+ FN+ G E ++E LE Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138 S +++ P+ ++ T + P ++K L G +S Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384 Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189 +GI + ++ + + + L+E+++ G E T D + Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444 Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + D ++Y K ++ + + + G R Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPHIIDTARNAFRHIMNGVGYGRV 504 Query: 247 DFLFDPLSRKVFWLEINVQPGM 268 DF DP V++LEIN GM Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525 >gi|227508335|ref|ZP_03938384.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192224|gb|EEI72291.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1021 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G +L + G+ V ++ + S+ +L PD Sbjct: 30 GSQACLSLREEGYSVILVNSNPATIMTDNEIADKVYLDPLTVPSLKKILEKEHPDAILPT 89 Query: 58 LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +E+ T + A ++ + +P ++ Sbjct: 90 LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D H I P +I+P G + D + L + + + + L+E+ Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62 C A++ AG I D S L L D NV+ Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120 + L + + + + ++ + ++ + + Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ V+ + + L+ + + G +LI+QY+ G E Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D + + + P + + +++ +A + + Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ +E+N + T P M+ +L ++ Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861 >gi|288561047|ref|YP_003424533.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter ruminantium M1] gi|288543757|gb|ADC47641.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter ruminantium M1] Length = 1058 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 30/296 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L + G + + D+D V ++ D Sbjct: 29 SGSQACKSLREEGLETVLVNSNPATIQTDMDMADTVYTEPLTAELVAQIIEKENIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + + LE +++ + +A D + +P C ++ Sbjct: 89 TMGGQTGLNIATELGKLGLLEGIKVIGSDVQTIADVEDRDLFANFMDRLDEPIPKCHAVE 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +++P G + + + ++ +Q+LI++ V Sbjct: 149 SVEGALEAVEEIGYPVIVRPAFTLGGTGGGIAHNKEELIEVTTHGLDMSYINQVLIDESV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + T I V + ++ + + ++ + ++ + Sbjct: 209 LGW-KEIEFEVMRDKNDTCIIVCNMENVDPMGIHTGDSIVVAPIQNLNDEVCQRLRDASI 267 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + +G G F +P + + +E+N P ++ S + GY ++ Sbjct: 268 KIIRNLGINGGCNIQFALNPETNEYKIIEVN--PRVSRSS--ALASKATGYPIAKI 319 Score = 44.5 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 30/290 (10%), Positives = 88/290 (30%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVLHGNFG 63 AL+D G + + DV + ++ ++P+ G Sbjct: 572 ALKDQGIETILVNNNPETVSTDYDVSDDLFFEPLTYEDIMGIIEQVEPEGVIVQFGGQTS 631 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V ++I T + ++ ++ Sbjct: 632 INLSVPLAKAGVKILGTPYESIDRVEDRERFTEVLNDLHIHQAPYGLANSFDEAKEAAER 691 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + ++ + + ++ + +L++++ D +EL ++ Sbjct: 692 IGFPVLVRPSYVIGGRAMEIVYGVDELEEYMKEAVKVSPEHPILVDKFLEDAVELDVDLL 751 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P IP + + ++ + G Sbjct: 752 CDGEDVFIAGIMEHIEEAG---VHSGDSACVIPPQTIPEHLLEVIRENTRKLALELDVIG 808 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + +V+ +E N + T P ++ G ++ + Sbjct: 809 LMNIQYAVKLDEERVYIIEANPRASRT----VPFVSKAIGVPLAKVATSL 854 >gi|224476306|ref|YP_002633912.1| carbamoyl phosphate synthase large subunit [Staphylococcus carnosus subsp. carnosus TM300] gi|254813602|sp|B9DPN2|CARB_STACT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|222420913|emb|CAL27727.1| carbamoyl-phosphate synthase, large chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 1057 Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G + +Q LE + + + + + D+ + +++ VPV S +V Sbjct: 90 LGGQTGLNMAIQLHDSGVLESNNVQLLGTKLSSIQQAEDRELFRSLMNELDVPVPESDIV 149 Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 N P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVTNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSMNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTVEDVMNIIDLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I T L A + + P + +++ Sbjct: 640 INLAEKLAEKGVQILGTSLENLNRAEDRKEFEALLNKIDVPQPKGKTATSPEEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + ++ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYNDAELGNYIREAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + K ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEDIKTLESYTTKLAKGLDIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVLAHDG--VYVLEVNPRSSRT----VPFLSKITNIPMAQLAMRAI 860 >gi|297539178|ref|YP_003674947.1| carbamoyl-phosphate synthase large subunit [Methylotenera sp. 301] gi|297258525|gb|ADI30370.1| carbamoyl-phosphate synthase, large subunit [Methylotenera sp. 301] Length = 1068 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIAKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L ++ + A + D+ + K+ ++ G+ S Sbjct: 89 TMGGQTALNCALDLDKHGVLAKYKVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + ++LLIE+ Sbjct: 149 AHSMEEALQVQASIGYPTIIRPSFTMGGSGGGIAYNREEFISICERGLDASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 10/265 (3%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A KP G + I T + Sbjct: 608 DRLYFEPVTL---EDVLEIVALEKPVGVIVQYGGQTPLKLARDLEKAGVPIIGTTPDAID 664 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + I P V++P + ++++ Sbjct: 665 MAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLALEIGYPLVVRPSYVLGGRAMEIVQE 724 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ ++ +L++++++ L V I + + Sbjct: 725 QSQLERYMREAVKVSNESPVLLDRFLN-DALEVDVDALCDNTGDVIIGGIMEHVEQAGVH 783 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + P + + E++ +A+G G+ F + VF LE+N + Sbjct: 784 SGDSACSLPPFSLSAKLQDELRDQTKQMARALGVVGLMNVQFAI--QGKTVFVLEVNPRA 841 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 842 SRT----VPFVSKACGLQLAKVAAR 862 >gi|288818559|ref|YP_003432907.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter thermophilus TK-6] gi|288787959|dbj|BAI69706.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter thermophilus TK-6] gi|308752149|gb|ADO45632.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Hydrogenobacter thermophilus TK-6] Length = 557 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+ V + D + ++ +PD Sbjct: 29 SGTQACRALKEEGYSVVLVNSNPATIMTDPSVADRTYIEPLTVEVLEEIIKAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + ILE + + A D+ ++ + G+ V S Sbjct: 89 TLGGQTALNLAVKLYEEGILERYGVELIGASYQAIKKGEDRELFRESMKKIGLKVPESAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M I P +++P G + + L + + Q+L+++ Sbjct: 149 VSSLEEGMSVIKSIGFPTILRPAFTLGGTGGAIAYNIEEFKEKLEVALKTSPIHQVLMDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I +F + + + Sbjct: 209 SLIGWKEFEFEVIRDSKDNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAC 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IEVMREVGVDTGGSNIQFAVNPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|167756066|ref|ZP_02428193.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402] gi|237734052|ref|ZP_04564533.1| carbamoyl-phosphate synthase large subunit [Mollicutes bacterium D7] gi|167704058|gb|EDS18637.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402] gi|229382878|gb|EEO32969.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. D7] Length = 1072 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 106/304 (34%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+K+ + DV + ++ +PD Sbjct: 29 SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + LE + + A D++ K+ + G+ + S Sbjct: 89 NLGGQSALNLCSELNEAGVLEKYNVQVLGVQVDAIERGEDRLEFKKEMDKLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + + Q LIE+ Sbjct: 149 STTVEEALAIAERLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVGQCLIEE 208 Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E V+ DA+ ++ + ++ S S +L I ++ ++ Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AF ++IG G + F DP + ++ +EIN + T S + G+ L+ Sbjct: 267 QAFRIVESIGVIGGTNVQFAHDPETDRIVVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T + A D + +P + ++ Sbjct: 641 LNLAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKR 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDDESLEQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D + VP + S +S +LP IP+ + ++ + + RG Sbjct: 758 DAISDGETVFVPAVMEHIELAGIHSGDSACILPSKHIPIRHLETIKEYTKKIAKEMNVRG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + KV+ LE N + T P ++ + ++ +V Sbjct: 818 LMNMQYAI--ADDKVYVLEANPRASRT----VPLVSKVCNINMVKIATDIV 862 >gi|317496859|ref|ZP_07955189.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895871|gb|EFV18023.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA] Length = 1066 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 32/297 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G++ + D D V ++ KPD A G Sbjct: 582 ALSKEGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ ++ H Sbjct: 642 IKLTEALMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHK 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + + +LI++Y+ G E+ + Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + + P + S +S V P+ D I + + +++ G Sbjct: 762 DGTDILI----PGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + F+ +V+ +E+N + T P ++ G L ++ A Sbjct: 818 LINIQFIV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGAKIR 868 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKIIEKEKPDSILPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G +++ T + A + + + + Sbjct: 90 LGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTMEKIGEPIAAGQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ +I P V++P G + + + L + ++L+E+Y Sbjct: 150 KTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLRLSRVGEVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ A Sbjct: 210 IGGW-KEVEYEVMRDENGTCITICNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M--------VEDASCLR 300 + +E+A + Sbjct: 325 IAIGYTLDEIENAVTKK 341 >gi|167765823|ref|ZP_02437876.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1] gi|167712540|gb|EDS23119.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1] gi|291559181|emb|CBL37981.1| carbamoyl-phosphate synthase, large subunit [butyrate-producing bacterium SSC/2] Length = 1066 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 32/297 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G++ + D D V ++ KPD A G Sbjct: 582 ALSKEGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ ++ H Sbjct: 642 IKLTEALMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHK 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + + +LI++Y+ G E+ + Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + + P + S +S V P+ D I + + +++ G Sbjct: 762 DGTDILI----PGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 + F+ +V+ +E+N + T P ++ G L ++ A Sbjct: 818 LINIQFIV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGAKIR 868 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKIIEKEKPDSILPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G +++ T + A + + + + Sbjct: 90 LGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTMEKIGEPIAAGQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ +I P V++P G + + + L + ++L+E+Y Sbjct: 150 KTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLRLSRVGEVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ A Sbjct: 210 IGGW-KEVEYEVMRDENGTCITICNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M--------VEDASCLR 300 + +E+A + Sbjct: 325 IAIGYTLDEIENAVTKK 341 >gi|229592648|ref|YP_002874767.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens SBW25] gi|229364514|emb|CAY52369.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens SBW25] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANSVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 87/284 (30%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L + ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEDELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|312127411|ref|YP_003992285.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor hydrothermalis 108] gi|311777430|gb|ADQ06916.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1077 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEK 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALRVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|301066501|ref|YP_003788524.1| carbamoylphosphate synthase large subunit [Lactobacillus casei str. Zhang] gi|300438908|gb|ADK18674.1| Carbamoylphosphate synthase large subunit [Lactobacillus casei str. Zhang] Length = 1060 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + ++ + + + Q+L+E+ Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P+ G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ + + C G Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855 >gi|227535062|ref|ZP_03965111.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187277|gb|EEI67344.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1060 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + ++ + + + Q+L+E+ Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P+ G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ + + C G Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855 >gi|261367606|ref|ZP_05980489.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum variabile DSM 15176] gi|282570394|gb|EFB75929.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum variabile DSM 15176] Length = 1078 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G + + D D V ++ KPD Sbjct: 29 SGTQACRALKSEGVETVLVNSNPATIMTDPDIADHVYIEPLTAEVVERIIEKEKPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + L+ + + D+ + + Sbjct: 89 NLGGQMGLNLSMELARNGFLDRSGVRLLACKPETIDRAEDRQLFKDTMEKLHQPIIPSKV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +D +I P +++P G + + + + + Q+L+E+ Sbjct: 149 VEDLDDALDFAEVIGYPVIVRPAFTMGGTGGGICEDREKLHEIATNGLRLSPIHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S + ++ + + Y+ ++ Sbjct: 209 CISGWKEIEYEVMRDSKGNVITVCNMENLDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +G G F P S + +E+N P ++ S + GY ++ Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 77/250 (30%), Gaps = 10/250 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV ++A KPD G L I T + + A ++ Sbjct: 616 ESVDNIIATEKPDGCLVQFGGQTAIKLAKHMDDIGLPILGTPADAIDEAEDRERFDELLE 675 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS- 158 P ++ + + + P +++P +IV + + + Sbjct: 676 RCGIPRPEGRTVYTLDEALKAAQEVGYPVLMRPSYVLGGQNMIVAYNSADVIEYMGVITA 735 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L+++Y+ G E + D + + + + + +S + P Sbjct: 736 HVDMSHPVLMDKYIYGTECEVDAICDGTDYLVPGIMEQIERTG---VHSGDSICVYPPYN 792 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + + G+ + KV+ +E+N + T P ++ Sbjct: 793 FSQKVIDTLVDYTGRFARELKVVGLVNVQYAV--QDGKVYVIEVNPRSSRT----VPYIS 846 Query: 279 AYAGYSFREL 288 G +L Sbjct: 847 KVTGVPMVDL 856 >gi|222152897|ref|YP_002562074.1| carbamoyl phosphate synthase large subunit [Streptococcus uberis 0140J] gi|254813606|sp|B9DRV7|CARB_STRU0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|222113710|emb|CAR41663.1| carbamoyl-phosphate synthase large chain [Streptococcus uberis 0140J] Length = 1058 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 89/271 (32%), Gaps = 12/271 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V V+ +P+ G + + I T L Sbjct: 606 DKLYFEPLTV---EDVMNVIDLERPEGVILQFGGQTAINLAEALDKANVPILGTQVRDLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + + P+ ++ + + I P +++P + ++ + Sbjct: 663 RAENRQLFEKALHDINIPQPLGQTVTNEQEALQVARRIGFPVLVRPSYVIGGRAMQIVTQ 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + + +LI+ Y+ G E + D + + + + Sbjct: 723 EEDLLTYMQSAVKVSSDQPVLIDSYILGQECEVDAISDGQDVLIPGIMEHIEAAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + DI + + + C+G+ F+ + V+ +E+N + Sbjct: 780 SGDSMAVYPPQNLSEDIIQTIIDYTKRLAINLNCKGMMNIQFVV--KDKTVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T P M+ G ++ ++ +S Sbjct: 838 SRT----VPFMSKVTGIPMAQVATKLILGSS 864 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 85/293 (29%), Gaps = 32/293 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADRVYIEPLTTEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + + A ++ ++ +P + Sbjct: 90 LGGQTGLNLAMSLSETGILNELGVELLGTKLSAINQAEDREQFKALMKALKQPIPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + D + + + +Q LIE+ Sbjct: 150 HSVEEALLFASQIGYPVIVRPAFTLGGTGGGICTNDIELEDITAKGLKLSPVNQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + + ++ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEHQLLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +A+ G DP S + +E+N P ++ S + GY Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFDYYVIEVN--PRVSRSS--ALASKATGYP 317 >gi|191638448|ref|YP_001987614.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Lactobacillus casei BL23] gi|239631462|ref|ZP_04674493.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus paracasei subsp. paracasei 8700:2] gi|226700930|sp|B3WEF5|CARB_LACCB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|190712750|emb|CAQ66756.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Lactobacillus casei BL23] gi|239525927|gb|EEQ64928.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382480|gb|AEA53956.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei LC2W] gi|327385678|gb|AEA57152.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei BD-II] Length = 1060 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + ++ + + + Q+L+E+ Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P+ G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ + + C G Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855 >gi|116494938|ref|YP_806672.1| carbamoylphosphate synthase large subunit [Lactobacillus casei ATCC 334] gi|122263644|sp|Q038Z2|CARB_LACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116105088|gb|ABJ70230.1| carbamoyl-phosphate synthase large subunit [Lactobacillus casei ATCC 334] Length = 1060 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + ++ + + + Q+L+E+ Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P+ G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ + + C G Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFIIHA--GKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855 >gi|315926045|ref|ZP_07922246.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315620659|gb|EFV00639.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 1081 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 92/292 (31%), Gaps = 30/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 CA AL + G++ + D D V ++ KPD A G Sbjct: 593 CAWALRELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRAIVETEKPDGAIVQFGG 652 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + I T + +A ++ P ++ + Sbjct: 653 QTAIKLTQHLDAIAVPILGTDPRYIDAAEDRERFDELVESCGIPRPKGDTVFKTEEAVAV 712 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P +I+ D + + ++ + +L+++Y+ G E+ Sbjct: 713 ARRLGYPVLLRPSYVLGGQNMIIAHSDADVEEYMGIITAHEITNPVLVDKYLMGKEVEVD 772 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + + P + + + +A+ Sbjct: 773 AICDGTDYLIPGIMEHVEKAG---VHSGDSISVYPPQTLSQKVRDTIVDYTGKLARALHV 829 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ ++ + V+ +E+N + T P ++ ++ + Sbjct: 830 IGLVNIQYVV--MDETVYVIEVNPRSSRT----VPYISKVTDIPMVDMATRI 875 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 41/312 (13%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL AG +V I+ + + V V+ KPD + Sbjct: 30 GTQACKALRQAGLEVVLINSNPATIMTDKAMADEIYIEPLTLDVVKRVIQKEKPDGLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + D+ K + G P PS + Sbjct: 90 LGGQTGLNLSMQLAKEGFLEANGVALLGADVTTIDKAEDRQAFKDTMREIGEPTIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I P +++P G + +++ + + Q+LIE+ Sbjct: 150 ESLEDALDFAGQIGYPVIVRPAFTLGGTGGGIAAAPEALDHIATRGLRLSPIHQVLIERD 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + +F ++ + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVMRDGKGNVITVCSMENFDP-VGIHTGDSIVVAPCQTLSDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA--Y 280 + G F +P + +E+N P ++ S ++AA Sbjct: 269 LKIISTLKVEGGCNCQFALNPDNFNYAVIEVN--PRVSRSSALASKATGYPIAKIAALIA 326 Query: 281 AGYSFRELLLWM 292 G+S E++ + Sbjct: 327 VGFSLDEIVNDI 338 >gi|215404958|ref|ZP_03417139.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289746781|ref|ZP_06506159.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] gi|289687309|gb|EFD54797.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987] Length = 157 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 5 MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53 GG S+E +S S + L+ F V + + + VL PD Sbjct: 2 FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDA 50 >gi|212212332|ref|YP_002303268.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii CbuG_Q212] gi|212010742|gb|ACJ18123.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii CbuG_Q212] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + ++ KPD Sbjct: 29 SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + + ILE + + A + D+ ++ + G+ S Sbjct: 89 TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + ++LI++ Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 98/294 (33%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D+ V ++A KP Sbjct: 588 VHAALVMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + ++ ++ P ++ + Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRVEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + + P +++P + VI ++ + + + + G+ LL+++++D IE+ Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S +S P + +I ++++ L + Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +++ LE+N + T P +A G ++ Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872 >gi|154707556|ref|YP_001424722.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway 5J108-111] gi|154356842|gb|ABS78304.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway 5J108-111] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + ++ KPD Sbjct: 29 SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + + ILE + + A + D+ ++ + G+ S Sbjct: 89 TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + ++LI++ Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 99/294 (33%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D+ V ++A KP Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ ++ P ++ + Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + + P +++P + VI ++ + + + + G+ LL+++++D IE+ Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S +S P + +I ++++ L + Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +++ LE+N + T P +A G ++ Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872 >gi|29654582|ref|NP_820274.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA 493] gi|161830009|ref|YP_001597134.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA 331] gi|29541850|gb|AAO90788.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA 493] gi|161761876|gb|ABX77518.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA 331] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + ++ KPD Sbjct: 29 SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + + ILE + + A + D+ ++ + G+ S Sbjct: 89 TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + ++LI++ Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 99/294 (33%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D+ V ++A KP Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ ++ P ++ + Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + + P +++P + VI ++ + + + + G+ LL+++++D IE+ Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S +S P + +I ++++ L + Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +++ LE+N + T P +A G ++ Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872 >gi|304311953|ref|YP_003811551.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium HdN1] gi|301797686|emb|CBL45908.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium HdN1] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 99/313 (31%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V V+ +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPAMADSTYIEPVNWQTVAKVIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ R + + S G+ S + Sbjct: 89 TMGGQTALNCALDLAKHGVLKEFGVELIGANADAIDKAEDRERFDRAMKSIGLETPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + + + +LLI++ Sbjct: 149 AHSLEEALQVQDRLGFPCIIRPSFTLGGSGGGIAYNREEFVEICNRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPSQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P+ ++ +E+N P ++ S ++AA Sbjct: 269 IAVLREIGVETGGSNVQFGINPVDGRMVVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ EL+ + Sbjct: 327 AIGYTLDELMNDI 339 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVALEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P + + Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMINRLGLLQPPNRTARSEEEAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 I P V++P + ++ + + + ++ ++ +L++ ++D Sbjct: 702 RYAEEIGYPLVVRPSYVLGGRAMEIVYSESELRRYMREAVQVSNDCPVLLDHFLDDAIEV 761 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + + S S P + D+ + ++ A + Sbjct: 762 DLDLVSDGRTSVIGGILQHIEQAGIHSGDSACSLP--PYSLSADLQETMREQARRMAAEL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 G G+ F V+ LE+N + T P ++ G S ++ +E S Sbjct: 820 GVVGLMNVQFAV--KKNDVYVLEVNPRASRT----VPFISKCIGISLAKIAARCMEGTSL 873 Query: 299 LR 300 + Sbjct: 874 EK 875 >gi|126664879|ref|ZP_01735863.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17] gi|126631205|gb|EBA01819.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17] Length = 1072 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIIWSTVAKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L + + + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALDLEKHGVLAKYGVEMIGANADTIDKAEDRSRFDKAMKSIGLECPRADI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + ++ + +LLI++ Sbjct: 149 AHNLEEAHRIADNVGFPCIIRPSFTMGGSGGGIAYNRGEFEEICIRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGIHPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 100/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42 + V+ GG + G+ +AL + G++ I D D S Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L + + ++H G + I T + A Sbjct: 615 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDCAED 674 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + + I P V++P + ++ + + Sbjct: 675 RERFQKLIAGLGLKQPENATVRSHEEGVIAARKIGYPLVVRPSYVLGGRAMEIVYGEDEL 734 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L++ +++ IE+ + D V + + Sbjct: 735 ERYMRSAVLVSNDSPVLLDHFLNAAIEVDIDAICDGKDVVIGGIMQHIEQAGIHSG---D 791 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P +P D+ ++ A+ G+ + ++ +E+N + T Sbjct: 792 SACSLPPYSLPADVQNAMRDAVKQMALALKVVGLMNVQLAW--QDGDIYVIEVNPRASRT 849 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 850 ----VPFVSKAIGVSLAKVAAR 867 >gi|329922673|ref|ZP_08278225.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. HGF5] gi|328942015|gb|EGG38298.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. HGF5] Length = 1068 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A K + P ++ +++ Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + + ++ N +LI++Y+ G E+ + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ ++ + + + RG+ Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G L + Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELDQPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G + ++ + + ++ Q LIE+ Sbjct: 150 TTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|212634060|ref|YP_002310585.1| carbamoyl phosphate synthase large subunit [Shewanella piezotolerans WP3] gi|212555544|gb|ACJ27998.1| Carbamoyl-phosphate synthase, large subunit [Shewanella piezotolerans WP3] Length = 1073 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELESRGVLKEFNVDMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMDEARAVLAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDCNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDTSDRLYFESITFEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + S Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIERLGMKQPENDTVTTVEGAVISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + DI ++ +G G Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQDIQDRMREQVGKLAMELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|261405694|ref|YP_003241935.1| carbamoyl-phosphate synthase large subunit [Paenibacillus sp. Y412MC10] gi|261282157|gb|ACX64128.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. Y412MC10] Length = 1068 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A K + P ++ +++ Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + + ++ N +LI++Y+ G E+ + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ ++ + + + RG+ Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G L + Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V ++ +PD Sbjct: 30 GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELDQPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G + ++ + + ++ Q LIE+ Sbjct: 150 TTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|229541175|ref|ZP_04430235.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans 36D1] gi|229325595|gb|EEN91270.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans 36D1] Length = 1066 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL++ G+ V ++ + + V ++ +PD Sbjct: 30 GTQACLALKEEGYHVVLVNSNPATIMTDTEMADKIYIEPLTPAFVARIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T G + A + R VP I Sbjct: 90 LGGQTGLNIAMELAKSGILDEYGVEVLGTRLGAIEQAEDREAFRELMGKLGEPVPDSMII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 P +++P G + + ++ + + + Q L+E+ Sbjct: 150 HTLEEAYRFIEKAGYPVIVRPAYTLGGTGGGICRNEEELIETVSGGLRQSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSEDHAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQFALDPDSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 31/294 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P+ G Sbjct: 578 AIQEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPEGVVVQFGGQTA 637 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T L A DK P+ + + Sbjct: 638 INLAEQLANRGVRILGTSLENLDRAEDRDKFDHLLNRLGIKRPLGKTGTSAEEAVRIAAE 697 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + + +LI++YV G E V+ Sbjct: 698 IGYPVLVRPSFVLGGRAMEIVYHEEDLRQYMKHAVKVSPNQPVLIDRYVTGQEFEVDVIA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + V + +S + P ++ + E+ + +G+ Sbjct: 758 DGRDILIPGIVEHIERAG---VHSGDSIAVYPPQRLSEALKAEMVETCRKLASELEIKGL 814 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F+ ++F +E+N P ++ ++ P E L + Sbjct: 815 MNIQFIVSH--NELFVIEVNPRSSRTVPFLSKITDVPMAKLAMKVILGESLENL 866 >gi|170727910|ref|YP_001761936.1| carbamoyl phosphate synthase large subunit [Shewanella woodyi ATCC 51908] gi|169813257|gb|ACA87841.1| carbamoyl-phosphate synthase, large subunit [Shewanella woodyi ATCC 51908] Length = 1072 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +LE + + A + D+ R + + + G+ + Sbjct: 89 TMGGQTALNCALELESKGVLEEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHSMDEANAVVAELGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ + S Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIERLGMKQPENDTVTTVEGAVLSAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + DI ++ +G G Sbjct: 767 CDGETVVVGSIMEHIEQAG---VHSGDSGCSLPPYSLSDDIQNRMREQVGKLAMELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|311068073|ref|YP_003972996.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus 1942] gi|310868590|gb|ADP32065.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus 1942] Length = 1071 Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSEQGVLQECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLEEAENFVSKIGFPVIVRPAYTLGGTGGGICSNEIELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK P+ + + Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAEDRDKFEQALETLQVPQPLGKTATSVEQAVKIASD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTGDIKKKIEQYTIALAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVL--SKGEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860 >gi|114321130|ref|YP_742813.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227524|gb|ABI57323.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1078 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V +L +PD Sbjct: 34 SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPIEWQTVARILEKERPDAVLP 93 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +LE L I + A ++ D+ ++ ++ G+ + Sbjct: 94 TMGGQTALNCALDLSREGVLERLGIEMIGANKEAIDMAEDRESFREAMARIGLETAHAEI 153 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+Q I P +++P G + + + + ++LLIE+ Sbjct: 154 AHSMEEALDAQKRIGFPTIVRPSFTLGGSGGGIAYNREEFIEICERGLDLSPTNELLIEE 213 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 214 SVLGWKEYETEVVRDKADNCIIICFIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 273 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 274 LAVLREIGVETGGSNVQFAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 329 Query: 291 WM 292 + Sbjct: 330 KL 331 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 89/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P+ Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVEIERPEGIIVQY 646 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + + Sbjct: 647 GGQTPLKLARDLEAAGAPIIGTTPDSIDLAEDRERFQGLINKLGLKQPPNRTARSADQAL 706 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ + + + ++ ++ +L+++++D +E+ Sbjct: 707 RLAAEIGYPLVVRPSYVLGGRAMDIVYGEDELLQYMHEAVRVSNDSPVLLDRFLDDAVEV 766 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + D+ ++ Sbjct: 767 DVDAICDGEDVLIGGIMEHIEQAG---VHSGDSACSLPPYTLAPDVQDRLREQTRALALE 823 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G ++ Sbjct: 824 LGVVGLMNIQFAIKGSD--VYLLEVNPRASRT----VPYVSKAIGTPLAKVAAR 871 >gi|118580936|ref|YP_902186.1| carbamoyl-phosphate synthase, large subunit [Pelobacter propionicus DSM 2379] gi|118503646|gb|ABL00129.1| carbamoyl-phosphate synthase large subunit [Pelobacter propionicus DSM 2379] Length = 1078 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADHTYIEPVTPEILARIIEKERPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V ILE + + + A + D+ KQ + + G+ + S Sbjct: 89 TLGGQTALNTAVAVAESGILERFGVELIGAKLPAIKKAEDRTLFKQAMENIGLAIPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + MD + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNRQEAMDVITCVGFPAIIRPSFTLGGSGGGIAYNMEEYEKMAVAGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGINPNDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++A KP G Sbjct: 594 ALAEDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLSIVAVEKPFGVIVQFGGQTP 653 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + Sbjct: 654 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLFKLELLQPENGIARSFEEAEKAAER 713 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 714 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDAL 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I ++ E++R L + +G Sbjct: 774 CDGTEVVIGGIMEHIEEAGIHSG---DSACSLPPYSISPEMVAEIRRQTSLMALELNVKG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + +V+ LE+N + T P ++ G ++ + Sbjct: 831 LMNVQYAI--KDGRVYILEVNPRASRTA----PFVSKATGRPLAKIAARI 874 >gi|222529530|ref|YP_002573412.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor bescii DSM 6725] gi|222456377|gb|ACM60639.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1077 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D S V ++ KP G Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A DK + + P + + Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQ 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + +LI++Y+ G E + Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ +A+ G+ Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALRVVGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + + ++ +P Sbjct: 29 SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ILE + + + + D+ + + VP Sbjct: 89 GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + P +++P G + ++ + + + Q+LIEQ Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D + ++ + + Y+ ++ Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +++ G F +P S + +E+N P ++ S + GY Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317 >gi|153207476|ref|ZP_01946176.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165918965|ref|ZP_02219051.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA 334] gi|212218697|ref|YP_002305484.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii CbuK_Q154] gi|120576607|gb|EAX33231.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917362|gb|EDR35966.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA 334] gi|212012959|gb|ACJ20339.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii CbuK_Q154] Length = 1073 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + ++ KPD Sbjct: 29 SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + + ILE + + A + D+ ++ + G+ S Sbjct: 89 TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LI++ Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNREEFLAICTRGLELSPTTEILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 99/291 (34%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D+ V ++A KP Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ ++ P ++ + Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + + P +++P + VI ++ + + + + G+ LL+++++D IE+ Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S +S P + +I ++++ L + Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F +++ LE+N + T P +A G ++ Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869 >gi|331700652|ref|YP_004397611.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri NRRL B-30929] gi|329127995|gb|AEB72548.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri NRRL B-30929] Length = 1021 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 96/293 (32%), Gaps = 31/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62 C A++ AG+ I D S L L D N++ Sbjct: 579 CVKAIQAAGYNAIIINNNPETVSTDFSISDKLYFEPLTIDSVMNIINLEQPIGVIVEFGG 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DS 120 + L + + + + D+ + + ++ + + Sbjct: 639 QTAINLTEGLTKHGVSILGTSLHGIEQTEDRHQFEDLLIDQNIAHPKGATATDAPEALEI 698 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ V+ D + L+ + +HG+ +LI+QY+ G E Sbjct: 699 ANHLGYPVLVRPSFVLGGKGMAVVHNDDELNEYLIPALKNSHGEPILIDQYIPGTECEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D + + + + P + D +++ +A + + Sbjct: 759 ILSDGNDVFVPGIMEHLEGAGIHSG---DSIAMYPPQTLTDDQKEKIVAIATKIGKQVHA 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P M+ +L ++ Sbjct: 816 VGMMNIQFIVA---DEVYVIEVNPRASRT----VPFMSKIVKLHLAQLATQLI 861 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G +L + G+ V ++ + S+ ++ PD Sbjct: 30 GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLEPLTVPSLKKIINKEHPDAILPT 89 Query: 58 LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +E+ T + A +K + +P ++ Sbjct: 90 LGGQTGLNLAVELSKDGILDELGIELLGTSLQTINEAEDREKFKDLMEELHQPIPDSKTV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D H I P +I+P G + D + L + + + + L+E+ Sbjct: 150 YDLQDGLDFAHKIDYPVIIRPAYTLGGTGGGIAHNDDEMTTILNRGLTMSPSTECLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEFEVMRDHHGSSIIVTGMENFDPVGIHTGDSIVFAPTQTLTDKEYQRLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIVNALKIEGGCNVQLAQDPNSEAYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|163815179|ref|ZP_02206560.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759] gi|158449588|gb|EDP26583.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759] Length = 1075 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 107/303 (35%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + DV + + ++A +PD Sbjct: 29 SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVKRLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + IL+ + + A D++ K+ +++ G+ + S Sbjct: 89 NLGGQSGLNLCAELAKEGILDKYNVKVIGVQVDAIERGEDRIEFKKSMNAIGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEALAIADQLGYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + I V + ++ + I D+ K +Q Sbjct: 209 SILGWE-ELELEVVRDCEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEDVQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ ++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVDSVEVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63 AL+ GF+ + D D S L KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYNKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R +P ++ H Sbjct: 641 LNLASDLEKNGVKILGTSPAVIDLAEDRDLFREMMDKLEIPMPESGMATTVDEALEIAHK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESLDGYMRAAVGVTPDRPILIDRFLN---HALECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P I + ++ + + G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHITAENVATIKEYTKKIAEEMHVVG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + KV+ LE N + T P ++ + ++ R Sbjct: 818 LMNMQYAI--EKGKVYVLEANPRASRT----VPLVSKVCNVRMVPIATDIITSELTGR 869 >gi|325980925|ref|YP_004293327.1| urea carboxylase [Nitrosomonas sp. AL212] gi|325530444|gb|ADZ25165.1| urea carboxylase [Nitrosomonas sp. AL212] Length = 1207 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 87/287 (30%), Gaps = 33/287 (11%) Query: 32 KVSQIDVDRSVGLVLAHLKPDLAFN--------VLH---GNFGEDGLVQAILELLEIPYT 80 +V I ++L+PD +H G E+ A +I + Sbjct: 47 EVYCIG---EGVAAESYLRPDKILQVAEQSGAQAIHPGYGFLSENAEFAAQCAAQQICFI 103 Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGS 137 K ++ + +P+ P + I P ++K GG Sbjct: 104 GPTPQQMRAFGLKHTARALAMENQIPLLPGTGLLENLDAACHQAKHIGYPVMLKSTAGGG 163 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 +G+ + + + + +++ + + V Sbjct: 164 GIGMRLCWNQDELSGAYESVKTLAQNNFKDAGLFLEKYVDPARHIEVQIFGDGKGQVIAL 223 Query: 198 DFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 ++ + PA + + + A +A+ + +++FD + + Sbjct: 224 GERDCSMQRRNQKVIEETPAPNLAPHLRQSLLDTAVRLGKAVNYQSAGTVEYIFDASTGE 283 Query: 257 VFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 ++LE+N + G+T G+ +L+ WMV A+ Sbjct: 284 FYFLEVNTRLQVEHGVTE--------EATGF---DLVEWMVRQAAGD 319 >gi|239906852|ref|YP_002953593.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus RS-1] gi|239796718|dbj|BAH75707.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus RS-1] Length = 1078 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG A AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIARERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + V +L+ + + + + + + + + G+ + S + Sbjct: 89 TLGGQTGLNTAVALAESGVLDEYGVDLLGASLDVIKKAESRELFRIAMDNIGLKIPQSGI 148 Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G V + + + + ++++E+ Sbjct: 149 CHTMEDVKEWGKRIPFPIIVRPAYTLGGTGGGVAYNQEDLEKIASVGLAASMKSEIMLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SIIGWKEFELEVMRDKADNCVIICSIENIDPMGVHTGDSITVAPAQTLTDDEYQQMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 13/268 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V +L KP+ G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVLNILEVEKPEGVIVQFGGQTPLNLAVPLLNAGVRILGTSPDSID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + ++ ++ P + I P V++P + ++ Sbjct: 675 RAENRERFQTLLQKLGLRQPANGTAFTVEDAATIADKIGYPVVVRPSYVLGGRAMEIVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + +LI+++ V+ E+ + D + + + Sbjct: 735 RADLENYFKVAVVASGKHPILIDKFLVNATEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P + + KE++R + +G G+ F ++ LE+N + Sbjct: 795 ---DSACVLPPHSLDPALIKEIERQTVALAEELGVVGLMNIQFAV--KDGDIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ G +L ++ Sbjct: 850 ASRTS----PFVSKATGVPLAKLATKVI 873 >gi|224107361|ref|XP_002314458.1| predicted protein [Populus trichocarpa] gi|222863498|gb|EEF00629.1| predicted protein [Populus trichocarpa] Length = 1179 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+ V I D D V V+A +PD Sbjct: 105 SGTQACKALREEGYDVILINSNPATIMTDPDLADRTYVAPLTPEVVEQVVAKERPDAILP 164 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V LE + + + A + D+ KQ + + G+ PS + Sbjct: 165 TMGGQTALNLAVALAANGVLEKYNVELIGAKLNAIKKAEDRDLFKQAMENIGLKTPPSGI 224 Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + + P +I+P G + + + + Q+L+ Sbjct: 225 GSTLEECIRISEEVIGEFPLIIRPAFTLGGSGGGIAYNKEEFEAICKAGLAASLTSQVLV 284 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ + G + + D I + + + + + Sbjct: 285 EKSLLGWKEYELEVMRDLSDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRD 344 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 345 YSIKIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKM 400 Query: 289 LLWM 292 + Sbjct: 401 AAKL 404 >gi|152984968|ref|YP_001350798.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PA7] gi|150960126|gb|ABR82151.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa PA7] Length = 1073 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDRAMKDIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V++P + ++ +++ + + ++ ++ +L++ +++ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +S ++ + P +P I E++ + Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G G+ +F +E+N + T P ++ G S ++ Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866 >gi|319956961|ref|YP_004168224.1| carbamoyl-phosphate synthase large subunit [Nitratifractor salsuginis DSM 16511] gi|319419365|gb|ADV46475.1| carbamoyl-phosphate synthase large subunit [Nitratifractor salsuginis DSM 16511] Length = 1089 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 87/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG A L++ G++V I+ + + + ++ K D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPEFAHRTYIEPIEPEIIARIIEKEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L+ +E + + + +P+ Sbjct: 89 TMGGQTALNVAMEMYERGMLDGVEFLGANPEAIKKGEDRQAFKEAMQKIGMDLPISKYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ + G V + +++LIE+ + Sbjct: 149 NMDEAIAAAKEIGFPLIIRASYTLAGGGSGVAYNMDEFKEIAKGGLEASPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSVNPETGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ +PD ++H + L + + L+ D Sbjct: 617 FEPIDF-EHVRKVIETEEPDGV--IVHFGGQTPLKLAKNLTAIGAKIIGTPARVIDLAED 673 Query: 93 KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + G+ + + + I P +++P + + D + Sbjct: 674 REKFSAFIEKLGLKQPANGTAFAKEEAIAIANRIGYPVLVRPSFVLGGRAMRTVYNDAEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +LI++++D +EL + D + + Sbjct: 734 REYMDEAVQVSNDSPVLIDKFLDNAVELDVDAISDGKEVYIGSVMQHIEEAGIHSG---D 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ +EV+R +G G+ + +++ +E+N + T Sbjct: 791 SACSLPPVSVDAELLEEVKRQTMEIALGLGVVGLLNIQYAIHR--GEIYLIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 849 ----VPFVSKATGVPLAKVATR 866 >gi|302392285|ref|YP_003828105.1| carbamoyl-phosphate synthase large subunit [Acetohalobium arabaticum DSM 5501] gi|302204362|gb|ADL13040.1| carbamoyl-phosphate synthase large subunit [Acetohalobium arabaticum DSM 5501] Length = 1067 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 96/310 (30%), Gaps = 35/310 (11%) Query: 18 SGKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFN 56 SG AL++ G +V + D+ V V+ +PD Sbjct: 29 SGTQACKALKEEGIEVVLVNSNPATIMTDTDIADQVYVEPITIDFVEEVIKKEEPDGILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +E+ T + A D+ R+ V Sbjct: 89 TLGGQTGLNLAVELAEAGILEETGIELLGTSLDSIQRAEDRDRFRATMEEIGQPVAESQI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +I+P G + Q + + + + + Q+LIE+ Sbjct: 149 IDTLAEAKEFVAEIGFPVIIRPAYTMGGAGGGIADNSQELEDIVSRGLNNSPISQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I + + ++ + + Y+ ++ Sbjct: 209 SIAGW-KEIEYEVLRDGADNCIVICNMENIDPVGIHTGDSIVVAPSQTLADLEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G F P S + +E+N P ++ S + GY + Sbjct: 268 SLEIIKELGIEGGCNVQFALHPDSLDYYVIEVN--PRVSRSS--ALASKATGYPIARVAA 323 Query: 291 WMVEDASCLR 300 + A+ LR Sbjct: 324 KI---ATGLR 330 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 11/265 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ PD G + +E+ T + Sbjct: 608 DKLFFEPITV---EHVLNIIDREDPDGVILQFGGQTSVNLAQLLAERGVEVLGTPVKSMD 664 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A DK + P + + + P +++P + V+ K Sbjct: 665 LAEDRDKFTQVLDELNIDYPAGTTATSREEALAIADDLGYPLLVRPSYVLGGRAMQVVYK 724 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + + +LI++Y+ G E+ + D + V + + + Sbjct: 725 EEELVEYMELAVKVSPDHPVLIDRYIPGKEVEIDAIADGNNAVIPGIMEHIEKAG---VH 781 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + + + + G+ F+ D K + LE+N + Sbjct: 782 SGDSMAVYPPQTLTDQQIDRIVEDTIKIVKRLEMNGLVNIQFVIDKE-GKPYVLEVNPRA 840 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G +L Sbjct: 841 SRT----IPILSKVTGVPMVKLATK 861 >gi|315658510|ref|ZP_07911382.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus lugdunensis M23590] gi|315496839|gb|EFU85162.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus lugdunensis M23590] Length = 1057 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLTKHGVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|289551015|ref|YP_003471919.1| Carbamoyl-phosphate synthase large chain [Staphylococcus lugdunensis HKU09-01] gi|289180547|gb|ADC87792.1| Carbamoyl-phosphate synthase large chain [Staphylococcus lugdunensis HKU09-01] Length = 1057 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLTKHGVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860 >gi|57505533|ref|ZP_00371460.1| carbamoyl-phosphate synthase, large subunit [Campylobacter upsaliensis RM3195] gi|57016080|gb|EAL52867.1| carbamoyl-phosphate synthase, large subunit [Campylobacter upsaliensis RM3195] Length = 1089 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 82/304 (26%), Gaps = 33/304 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ +L K D Sbjct: 29 SGTQAAKTLKELGYRVILINSNPATIMTDPEFADATYIEPITKESILSILKKEKVDAILP 88 Query: 57 VLHGNF--------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 + G E + ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVFESEEFKKDFSFVKFLGANPEAIKKGEDRQIFKECMKKIGMDLPKS 148 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 T+ + I P +I+ G V+ + S + ++LI Sbjct: 149 MYAYDYEETLKAVDEIGFPLMIRASYTLGGAGSGVVYNLDEFKDLATAALSLSPIHEILI 208 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ + G + + D I + + + + Sbjct: 209 EESLLGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQAMRN 268 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F P + ++ +E+N P ++ S + GY ++ Sbjct: 269 ASFAILREIGVDTGGSNVQFAIHPQNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKV 324 Query: 289 LLWM 292 + Sbjct: 325 ATLL 328 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 83/262 (31%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + L+ D Sbjct: 621 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 677 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + G+ + + I P +++P + V+ + + Sbjct: 678 RKKFALFCENLGINQPRNATATKVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVYDEAEL 737 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + + +LI++++D E+ + D + + Sbjct: 738 RLYMQEAVAVSERSPVLIDEFLDNATEIDVDAISDGKEVYVAGIMEHIEEAGIHSG---D 794 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + +G +G+ F K+F +E+N + T Sbjct: 795 SACSLPPCNIDEKTQELICQKTTEIALNLGVKGLLNIQFALHE--NKLFMIEVNPRASRT 852 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 853 ----VPFVSKATGVPLAKVATR 870 >gi|194014423|ref|ZP_03053040.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC 7061] gi|194013449|gb|EDW23014.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC 7061] Length = 1071 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M + I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLEEAMAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSGDHAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V ++ +P+ G Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + DK P + + + Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAENRDKFEQTLEALGVPQPKGKTATSVPEAVAIANQ 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEAELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + +I ++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +VF LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860 >gi|157692232|ref|YP_001486694.1| carbamoyl phosphate synthase large subunit [Bacillus pumilus SAFR-032] gi|157680990|gb|ABV62134.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Bacillus pumilus SAFR-032] Length = 1071 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M + I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLEEAMAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSGDHAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V ++ +P+ G Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + DK P + + + Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAENRDKFEQTLETLGVPQPKGKTATSVPEAVAIANQ 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQETELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + +I ++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +VF LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860 >gi|218893851|ref|YP_002442720.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa LESB58] gi|218774079|emb|CAW29895.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa LESB58] Length = 1073 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V++P + ++ +++ + + ++ ++ +L++ +++ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +S ++ + P +P I E++ + Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G G+ +F +E+N + T P ++ G S ++ Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866 >gi|15599950|ref|NP_253444.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1] gi|116052903|ref|YP_793220.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|296391583|ref|ZP_06881058.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAb1] gi|313109737|ref|ZP_07795677.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa 39016] gi|12644249|sp|P38100|CARB_PSEAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|9951019|gb|AAG08142.1|AE004889_5 carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa PAO1] gi|1750387|gb|AAB39252.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa PAO1] gi|115588124|gb|ABJ14139.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|310882179|gb|EFQ40773.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa 39016] Length = 1073 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V++P + ++ +++ + + ++ ++ +L++ +++ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +S ++ + P +P I E++ + Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G G+ +F +E+N + T P ++ G S ++ Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866 >gi|107103853|ref|ZP_01367771.1| hypothetical protein PaerPA_01004924 [Pseudomonas aeruginosa PACS2] Length = 1055 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 11 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 70 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 71 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 130 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LLI++ Sbjct: 131 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 190 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 191 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 250 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 251 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 306 Query: 291 WM 292 + Sbjct: 307 KL 308 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 564 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 623 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 624 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 683 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V++P + ++ +++ + + ++ ++ +L++ +++ Sbjct: 684 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 743 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + +S ++ + P +P I E++ + Sbjct: 744 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 801 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G G+ +F +E+N + T P ++ G S ++ Sbjct: 802 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 848 >gi|330993912|ref|ZP_08317842.1| Carbamoyl-phosphate synthase large chain [Gluconacetobacter sp. SXCC-1] gi|329758858|gb|EGG75372.1| Carbamoyl-phosphate synthase large chain [Gluconacetobacter sp. SXCC-1] Length = 1084 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++A KPD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEFVERIIAREKPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + + D+ + ++ + G+ S++ Sbjct: 89 TMGGQTALNTAMALDRSGFLKKHNVELIGANAEVIDRAEDRQKFREAMDEIGIESPRSLI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P VI+P G + + + + ++LIE+ Sbjct: 149 AHTLEEARRALETVGLPAVIRPSFTMGGSGGGIAYNREEFDRIVSSGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRLRDMS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 269 LACLRRIGVETGGSNVQFGINPVDGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.100, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 91/327 (27%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + ++ G + + T + + Sbjct: 616 RLYFEPLTAEDVIALIRREQAKGTVLGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P I P V++P + ++ Sbjct: 676 RAEDRERFQAMLHRLGLRQPANGIARNPAEAEAVAEKIGYPVVVRPSYVLGGRAMEIVHD 735 Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 S+ + + +G L+ D IE + D + + + Sbjct: 736 RASLQRYMRVALQLAGAEVANGPVLIDHYLNDAIEADVDCIADGNEVYVAGVMEHIEEAG 795 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + I E++ + +G G+ + +F LE Sbjct: 796 IHSG---DSACSLPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAIKGHD--IFVLE 850 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873 >gi|255570773|ref|XP_002526339.1| ATP binding protein, putative [Ricinus communis] gi|223534298|gb|EEF36010.1| ATP binding protein, putative [Ricinus communis] Length = 1197 Score = 65.7 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+ V I D D V V+ +PD Sbjct: 122 SGTQACKALKEEGYDVILINSNPATIMTDPDLADRTYIAPMTPELVEQVIEKERPDALLP 181 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V + L+ + + + A + D+ KQ + + G+ PS + Sbjct: 182 TMGGQTALNLAVALAERGTLDKYNVELIGAKLDAIKKAEDRDLFKQAMKNIGLKTPPSGI 241 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 Q P +I+P G + + + + Q+L+E Sbjct: 242 GTTIDECFQIANDIGEFPLIIRPAFTLGGTGGGIAYNIEEFEGICKGGLAESLTSQVLVE 301 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 302 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 361 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 362 SIKIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 417 Query: 290 LWM 292 + Sbjct: 418 AKL 420 >gi|218887394|ref|YP_002436715.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758348|gb|ACL09247.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1078 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++ +PD Sbjct: 29 SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G G + + L E G + + R + + P Sbjct: 89 TLGGQTGLNTALALAAMGVLEECGVDLIGANKQVIEKAESRELFREAMANIGLKVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + + + +++IEQ Sbjct: 149 ARTMEDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIAARGLAASIKHEVMIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + ++ Sbjct: 209 SVLGWKEFEMEVMRDKADNCVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFGINPQNGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 13/272 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KPD G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVMNIIETEKPDGVVVQFGGQTPLNLAVPLMRAGVPILGTSPDSID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P +++ + I P V++P + ++ Sbjct: 675 RAEDRERFQALLQKLGLRQPANATVMSLPEARSAAARIGYPTVVRPSYVLGGRAMEIVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + S +LI+++++ IE+ + D + + + Sbjct: 735 EEQLAEYFANSVGEKPKHPILIDKFLESAIEVDVDALSDGTDVYVAGIMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P +P I E+ R + + G+ F ++ LE+N + Sbjct: 795 ---DSACVIPPHTLPEAIVNEIARQTVELARELRVVGLMNIQFAV--KDGLIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T P ++ L ++ A+ Sbjct: 850 ASRTA----PFVSKATAVPLPRLATQIMLGAT 877 >gi|158521457|ref|YP_001529327.1| carbamoyl phosphate synthase large subunit [Desulfococcus oleovorans Hxd3] gi|158510283|gb|ABW67250.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus oleovorans Hxd3] Length = 1066 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+ V + D+ ++ ++ +PD Sbjct: 29 SGTQACKALRSLGYTVVLVNSNPATIMTDPGMADITYIEPLNVATLTRIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + + L+ + + A D+ K + G+ + S Sbjct: 89 NLGGQSGLNLSSELHQAGVLDKYGVKIIGVNVDAIKRGEDRTEFKNTMERLGIEMARSRT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P VI+P G + + + + + + + +Q+L+E+ Sbjct: 149 VTTVEDAEKVAEEIGYPVVIRPAYTMGGTGGGFVYNVEELRVIAARGLAASMVNQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + T + I + + +Q+ Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSFCTAPM-MTISPALQERLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ AI G + F DP + +V +EIN + T S + G+ ++ Sbjct: 268 SYDIVDAIEVIGGTNVQFAHDPATGRVVVIEINPR---TSRSS-ALASKATGFPIA-MVS 322 Query: 291 WMV 293 ++ Sbjct: 323 ALL 325 Score = 39.5 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 13/261 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 F+ + V + A KPD G + + I T + Sbjct: 606 NKLYFEPLTV---EDVLSIYAKEKPDGVIVQFGGQTPLNLARALEAAGVNILGTSPDTID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ R P ++ I P +++P + V+ Sbjct: 663 LAEDRDRFRQVMQDLGIPQPESGMASTLDQALEIAARIGYPLMVRPSYVLGGRAMEVVAD 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + + + +LI+++++ DA D T+ VP + Sbjct: 723 EEMLRQYVTAAVDVSPDRPILIDKFLEN---AIEAEADAIADGTDAFVPAVMEHIELAGV 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP + + + G+ + V+ LE N + Sbjct: 780 HSGDSACVLPPVSIPEKHINTIVDYTRKIAMTLKVVGLMNIQYAI--ADDCVYILEANPR 837 Query: 266 PGMTPVSIFPEMAAYAGYSFR 286 T P ++ Sbjct: 838 ASRT----VPLVSKVCNIPMA 854 >gi|321315317|ref|YP_004207604.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5] gi|320021591|gb|ADV96577.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5] Length = 1071 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK P+ + + Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860 >gi|302871822|ref|YP_003840458.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574681|gb|ADL42472.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1075 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 97/318 (30%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ + D Sbjct: 29 SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + S++ Q+L+E+ Sbjct: 149 VNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARKGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + G F +P + + +E+N P ++ S + GY + Sbjct: 267 SALKIIDVLKIEGGCNVQFALNPENFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 89/253 (35%), Gaps = 16/253 (6%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V V+ +K D G + L I + ++ D+ R + Sbjct: 619 KEDVLNVIETVKADGVIVQFGGQ--TAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDK 676 Query: 99 VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +++ + P + ++ + + P +++P G+ + D I L Sbjct: 677 ILNKLNIKRPPGFTCFALQEALEIANSLGYPVLVRPSYVLGGQGMKIAFDDNDIVEMLSY 736 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + + + +LI++Y+ G E+ + D + P + S +S + P Sbjct: 737 AKN-LNDHPILIDKYIVGKEIEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYP 791 Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275 A+ I + + + C+G+ F+ + +++ +E+N + T P Sbjct: 792 ARNISKYIEDRIVEYTHKIAKELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VP 845 Query: 276 EMAAYAGYSFREL 288 ++ G EL Sbjct: 846 FLSKVTGVPMVEL 858 >gi|291484104|dbj|BAI85179.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. natto BEST195] Length = 1071 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK P+ + + Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVLSQC--EVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860 >gi|119504337|ref|ZP_01626417.1| carbamoyl-phosphate synthase large subunit [marine gamma proteobacterium HTCC2080] gi|119459845|gb|EAW40940.1| carbamoyl-phosphate synthase large subunit [marine gamma proteobacterium HTCC2080] Length = 1073 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPVEWQTVARIIERERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + +L + + A + D+ Q + G+ + Sbjct: 89 TMGGQTALNCALKLAAEGVLNKYGVEMIGASKDAIDKAEDRELFDQAMKRIGLETPRAST 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + ++LLI++ Sbjct: 149 VHSMDEAFKVLGDLGFPCIIRPSFTMGGSGGGIAYNRDEFEAICQRGFDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDRKDNCIIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQVMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKVLREIGVETGGSNVQFGLCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 103/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39 + VL GG + G+ +AL + G++ + D D Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++A KP+ G + I T + A Sbjct: 614 RLYFEPVTLEDVLEIVALEKPEGVIVQFGGQTPLKLARALESAGVPIIGTTPDQIDRAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P ++ + + I P V++P + ++ +++ + Sbjct: 674 RERFQHMIQKLGLRQPENTTVRSVDQAIAAAAAIGYPLVVRPSYVLGGRAMEIVYREEDL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + + +L++ ++ IE+ + D V + + +S Sbjct: 734 LRYMRDAVRVSEDSPVLLDSFLSAAIEVDIDAVSDGKTVVIGAIMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + D+ +++ + +G G+ + +++ +E+N + T Sbjct: 791 SACSLPPYSLDADVQDQMRDVVRAMAIELGVCGLMNVQLAY--QDEEIYVIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 849 ----VPFVSKAVGISLAKIASR 866 >gi|16078616|ref|NP_389435.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. 168] gi|221309426|ref|ZP_03591273.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. 168] gi|221313751|ref|ZP_03595556.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318675|ref|ZP_03599969.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. JH642] gi|221322947|ref|ZP_03604241.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. SMY] gi|115626|sp|P25994|CARB_BACSU RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|143390|gb|AAA21270.1| carbamyl phosphate synthetase [Bacillus subtilis] gi|2633925|emb|CAB13426.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1071 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK P+ + + Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860 >gi|332526111|ref|ZP_08402249.1| carbamoyl-phosphate synthase large subunit [Rubrivivax benzoatilyticus JA2] gi|332109954|gb|EGJ10582.1| carbamoyl-phosphate synthase large subunit [Rubrivivax benzoatilyticus JA2] Length = 1081 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+M+ K +++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLAKYGVEMIGANEHAIEKAEDRMKFKDAMTAIGLESAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMEEALAVQRRIQSEIGGTGFPMVIRPSFTMGGTGGGIAYNPEEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 KELLIEESLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QLMRNASIAILREIGVDTGGSNVQFSVNPNNGRLIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 93/295 (31%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 585 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 644 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + A ++ + P + + Sbjct: 645 GGQTPLKLALDLERAGVPIIGTTPDSIDIAEDRERFQKLLHELGLKQPPNRTARTEEQAL 704 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 H I P V++P + ++ D+ + + ++ + +L+++++D + Sbjct: 705 ALAHEIGYPLVVRPSYVLGGRAMEIVHGDKDLERYMREAVKVSDKSPVLLDRFLD-DAVE 763 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V A + + +S ++ + P + + E++R A +A+ Sbjct: 764 VDVDCIADATGKVLIGGIMEHVEAAGIHSGDSACSLPPYSLSPALQDEMRRQAAAMAKAL 823 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G G+ + F V+ LE+N + T P ++ G ++ Sbjct: 824 GVVGLMNTQFAVQGEGDDAVVYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 874 >gi|84496656|ref|ZP_00995510.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649] gi|84383424|gb|EAP99305.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649] Length = 1105 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L + G +V ++ + V ++ +PD Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIEKERPDAVLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G +LE P + + A L D+ K VV CG S+ Sbjct: 89 TLGGQTALNCAIALHENGVLEKYNCPLIGANVEAIQLGEDRQLFKGVVERCGADSARSVI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P LG + + + ++L+E+ Sbjct: 149 AHTMDDCIAAAEELGYPMVVRPSFTMGGLGSGFAHDETELRRMAGAGLQASPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + + Sbjct: 209 SIKGWKEYELEVMRDHKDNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQRLRDVG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +PL ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREVGVDTGGCNIQFAINPLDGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 M Sbjct: 325 KM 326 >gi|120597833|ref|YP_962407.1| carbamoyl phosphate synthase large subunit [Shewanella sp. W3-18-1] gi|146294029|ref|YP_001184453.1| carbamoyl phosphate synthase large subunit [Shewanella putrefaciens CN-32] gi|120557926|gb|ABM23853.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. W3-18-1] gi|145565719|gb|ABP76654.1| carbamoyl-phosphate synthase large subunit [Shewanella putrefaciens CN-32] gi|319427368|gb|ADV55442.1| carbamoyl-phosphate synthase, large subunit [Shewanella putrefaciens 200] Length = 1074 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + +LLI++ Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P+ ++ +E+N P ++ S ++AA Sbjct: 269 MAVLREIGVETGGSNVQFGINPIDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ EL+ + Sbjct: 327 AVGFTLDELMNDI 339 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + +I ++ +G G Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|295703118|ref|YP_003596193.1| urea carboxylase [Bacillus megaterium DSM 319] gi|294800777|gb|ADF37843.1| urea carboxylase [Bacillus megaterium DSM 319] Length = 1203 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 27/276 (9%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 V + ++ + L +A A + +G E+ + I + + Sbjct: 56 VKESYLNEDLILDIAKKTGAEAIHPGYGFLSENAEFARRCQAEGIVFIGPTPQQMEIFGL 115 Query: 93 KMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 K ++++ VP+ P I + + I P ++K GG +G+ V + +++ Sbjct: 116 KHSAREIAQKADVPLLPGTPLITDVSEAVCAAEEIGYPVMLKSTAGGGGIGMRVCQDEKA 175 Query: 150 IPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + L + + + G++ +V + Sbjct: 176 LQAAFDSVCHLAQTNFKNSGVFLEKYIQKARHVEVQIFGNSFGEVVALGERDCSIQRRNQ 235 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 K + P+ I + + + A + +G R +FL+D + K ++LE+N Sbjct: 236 KVIEESPAPNFPSY----IRENMLQAATRLAKEVGYRSAGTVEFLYDAEAEKFYFLEVNT 291 Query: 265 QPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDA 296 + G + +L+ WM+++A Sbjct: 292 -----------RLQVEHGVTEEVLNVDLVEWMLKEA 316 >gi|160903135|ref|YP_001568716.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis SJ95] gi|160360779|gb|ABX32393.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis SJ95] Length = 1496 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G KV ++ + ++ ++ KPD Sbjct: 29 SGTQACKSLKEEGCKVILVNNNPATIMTDTEIADVVYMENLEMDTLISIIEKEKPDGILG 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + ++Q ++ +I + + + ++ + + K + + Sbjct: 89 TLGGQTALNLIIQLKDSGIIDKYDIQELGTSVESIKIAESRELFKRKMQEIEEPIAESLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + + P +I+P G ++ + + + ++LIE+ Sbjct: 149 VSTVSEAINFANKVGYPLIIRPAYTLGGTGGGFAYNEEELIEFVENGLKKSMMKEVLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + ++ ++ Sbjct: 209 SLLGW-KEIEYELVRDSFDNCITVCNMENFDPVGIHTGDSIVVAPSQTLTDQEHQMLRDS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F +P + + +E+N P ++ S + GY ++ Sbjct: 268 SIKIIKALKIEGACNIQFALNPYNEEYRVIEVN--PRLSRSS--ALASKATGYPIAKIAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 104/323 (32%), Gaps = 48/323 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + V+ GG + G+ AL++ K I D D Sbjct: 555 VIVIGGGP-------IRIGQGVEFDYCTVKALWALKEKCIKSIIINNNPETVSTDFDTGD 607 Query: 43 GLVLAHLKPDLAFNVLH----------GNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 L L + N++ + LE I + L D Sbjct: 608 RLYFEPLTQEDVLNIIEKEDPMGTMVMFGGQTALNLGEELERHGIKILGTSYEHIDLCED 667 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + R ++ + + + + P +++P I + + + Sbjct: 668 RKRFSLLLKELEINQPRGGYVTSFDEAREIAKRLGFPLLVRPSYVIGGQSIEKVNSEDEL 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 L + + +LI++Y++G+E+ + D + P + + S + Sbjct: 728 FEYLSHALDLSPNRPVLIDEYIEGVEVEVDAVSDGENVLI----PGIMEHIEKAGIHSGD 783 Query: 211 STHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S V PAK ++ ++ R +A+ +G+ F+ KV+ +E+N + T Sbjct: 784 SFAVFPAKTLSELEEKEIVRYVEKISKAVKVKGLINIQFIV--KEGKVYVIEVNPRASRT 841 Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292 P ++ G +L + + Sbjct: 842 ----VPIISKVTGIPMIKLAVEI 860 >gi|116751328|ref|YP_848015.1| carbamoyl phosphate synthase large subunit [Syntrophobacter fumaroxidans MPOB] gi|116700392|gb|ABK19580.1| carbamoyl-phosphate synthase large subunit [Syntrophobacter fumaroxidans MPOB] Length = 1066 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56 SG AL G+ V+ I+ SV ++ +PD Sbjct: 29 SGTQACKALRKLGYSILLVNSNPATIMTDPGMADVTYIEPLTFESVKKIIEKERPDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + +L+ + A D++ K+ ++ + + S Sbjct: 89 NLGGQTGLNLTAELHRKGVLDACGVKIIGVQADAIERGEDRIAFKETMNRLNIEMPRSEP 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P VI+P G ++ + + + S + Q+L+E+ Sbjct: 149 ALSVKEAEEIAARLGYPVVIRPAYTLGGTGGGLVYNVEELRTIAGRGISASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + T + I + +++Q+ Sbjct: 209 SVLGWEELELEVVRDAKNRRITVCFIENVDAMGIHTGDSFCTAPM-LTISPALQEKLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +AI G + F DP + +V +EIN + T S + G+ ++ Sbjct: 268 SYDIVEAIEVIGGTNIQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA-MIS 322 Query: 291 WMV 293 M+ Sbjct: 323 SML 325 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP+ G + + E + I T + Sbjct: 606 DKLYFEPVTV---EDVLSIYEKEKPEGVIVQFGGQTPLNIARELCDEGVNILGTTVDTID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ R +P ++ I P +++P G+ ++ Sbjct: 663 LAEDRDRFRGMMKKLGIPMPESGMASTLEEALEVARKIGYPLMVRPSYVLGGRGMEIVHD 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ +LI+++++ DA D T+ VP + Sbjct: 723 EEMLERYVAAATGVTPDRPILIDKFLEN---AIEAEADAISDGTDAFVPAVMEHIELAGI 779 Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + P IP + + + G+ + + V+ LE N + Sbjct: 780 HSGDSACVIPPISIPPRHLETIYEYTRKIAVELNVVGLMNIQYAIARDT--VYVLEANPR 837 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ + W+ Sbjct: 838 ASRT----VPLVSKVCNIPMARMATWI 860 >gi|332295571|ref|YP_004437494.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfobium narugense DSM 14796] gi|332178674|gb|AEE14363.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfobium narugense DSM 14796] Length = 1076 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 90/298 (30%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + V V+ +PD Sbjct: 29 SGTQAIKALKQEGYEVVLVNSNPATIMTDPEMADHTYIEPITPQVVTKVIKKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + V ILE + A D++ ++ + GV + S + Sbjct: 89 TLGGQTALNVAVNLAEAGILEKYNVEMLGVNTDAIKKGEDRLLFRETMKEIGVDLPKSGI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + + Q+LIE+ Sbjct: 149 AHSLNEAEKIAFELGFPLIIRPSFTLGGTGGGIAYNFDDLRYHVSNGLDLSMIHQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V + + D I +F + + + + Sbjct: 209 SVLNWKEFELEVMRDKKDNVVIICSIENFDPMGIHTGDSITVAPIQTLTDKEYQVLRDMS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVIRKIGVDTGGSNIQFAMNPKDGRIVIIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 63/174 (36%), Gaps = 13/174 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + P +++P + ++ D + + ++ + +LI+++ D IE+ Sbjct: 706 ARSLGYPVLVRPSYVLGGRAMEIVYDDNDLMEYIKKAVEVSEAKPVLIDRFLEDAIEIDV 765 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238 + D + + E S +S VLP + E+ R+ + Sbjct: 766 DALCDGDEVFIGGIMEHIE----EAGIHSGDSACVLPTFSLTKEELTELSRITREIALKL 821 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G +G+ + K++ LE+N + T P ++ G +L + Sbjct: 822 GVKGLINIQYAIR---DKIYVLEVNPRASRT----VPFVSKTIGIPLAKLATQI 868 >gi|227523552|ref|ZP_03953601.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus hilgardii ATCC 8290] gi|227089317|gb|EEI24629.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus hilgardii ATCC 8290] Length = 1021 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G +L + G+ V ++ + S+ +L PD Sbjct: 30 GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKKHPDAILPT 89 Query: 58 LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +E+ T + A ++ + +P ++ Sbjct: 90 LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D H I P +I+P G + D + L + + + + LIE+ Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62 C A++ AG I D S L L D NV+ Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120 + L + + + + ++ + ++ + + Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ V+ + + L+ + + G +LI+QY+ G E Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYISGTECEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++ D + + + P + + +++ +A + + Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ +E+N + T P M+ +L ++ Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861 >gi|3820584|gb|AAC70356.1| carbamoylphosphate synthetase large subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 1092 Score = 65.3 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 30/301 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-I 111 + G + LE + A + D+++ +Q + G+ S + Sbjct: 89 TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +I+P G V + + S + ++LIE+ Sbjct: 149 AHSLEEALDGLDYVLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEES 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D I + + + + Sbjct: 209 VIGWKEYEMEVVRDRHDNCIIICSIENIDPMGVHTGDSITVAPALTMTDKEYQIMRNASI 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 AVLREIGVETGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 L 325 Score = 42.2 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59 ALE AG++ + D D S L L + +LH Sbjct: 618 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 677 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + + I T + A ++ + P + Sbjct: 678 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 737 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P +I+P + +I + + + + +LI+QY+ + T Sbjct: 738 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 795 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + +S ++ + P +P I +E++ +A+ Sbjct: 796 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 855 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ F KV+ +E+N + T P +A G ++ Sbjct: 856 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 901 >gi|71406882|ref|XP_805945.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70869544|gb|EAN84094.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 789 Score = 65.3 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 21/262 (8%) Query: 27 EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 + + +++ + +S V ++ D+ FN+ G E ++E LE Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138 S +++ P+ ++ T + P ++K L G +S Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384 Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189 +GI + ++ + + + L+E+++ G E T D + Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444 Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246 + D ++Y K ++ + + + + G R Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPQIIDTARNAFRHIMNGVGYGRV 504 Query: 247 DFLFDPLSRKVFWLEINVQPGM 268 DF DP V++LEIN GM Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525 >gi|89098074|ref|ZP_01170960.1| carbamoyl-phosphate synthase(arginine-specific) large chain [Bacillus sp. NRRL B-14911] gi|89087237|gb|EAR66352.1| carbamoyl-phosphate synthase(arginine-specific) large chain [Bacillus sp. NRRL B-14911] Length = 1043 Score = 65.3 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 94/310 (30%), Gaps = 41/310 (13%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + S+ ++ +PD Sbjct: 36 GTQACMALKEEGYKVILVNNNPATIMTDHSYADTIYFEPLTVDSLEKIIMKERPDGLLAS 95 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G +++ + + ++ R VP + Sbjct: 96 LGGQTGLNLAMALSETGVLEKYKVKMLGSPIASIKKGEDREEFRQLMKELDEPVPDSEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + + L + + Q L+E+ Sbjct: 156 REAKEAKRFAEASGFPIIVRPAYTLGGSGGGIAHSMEEFMLLVEGGLLESPISQCLVEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G D T I + + ++ + + + Y+ ++ + Sbjct: 216 IAG-YKEIEYEVMRDKDNTCITICNMENIDPVGVHTGDSIVIAPSQTLTDEEYQMLRSAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA-Y 280 A+G G F DP S+K + +E+N P ++ S +P A Sbjct: 275 IKIISALGIIGGCNIQFALDPESKKYYLIEVN--PRVSRSSALASKATGYPIARMAAKLA 332 Query: 281 AGYSFRELLL 290 GYS ELL Sbjct: 333 VGYSLSELLN 342 Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + + + +G+ ++ D +V+ LE+N + T P ++ A Sbjct: 806 MFEYGKKIVKDLAYKGLMNIQYIVD--GEEVYLLEVNPRASRT----VPVVSKVANVPLV 859 Query: 287 ELLLWMV 293 ++ ++ Sbjct: 860 QIATKIL 866 >gi|94986169|ref|YP_605533.1| carbamoyl phosphate synthase large subunit [Deinococcus geothermalis DSM 11300] gi|167006439|sp|Q1IWM0|CARB_DEIGD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|94556450|gb|ABF46364.1| carbamoyl-phosphate synthase, large subunit [Deinococcus geothermalis DSM 11300] Length = 1029 Score = 65.3 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G++V + D D V V+ +PD Sbjct: 29 SGTQALKALKKEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVRKVIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ++ L+ + + A D+ + + GV + Sbjct: 89 TLGGQTALNLAMELNANGTLKEFGVELIGANAEAIHKGEDREAFQAAMKKIGVETARGKM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ ++ Q I P VI+P G + + + +L+E+ Sbjct: 149 VHSLEEAIEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEDFLKITEGGLRDSPVHSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + ++ + Sbjct: 209 SILGWKEYELEVMRDHADTVVIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVDTGGSNIQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 >gi|295091307|emb|CBK77414.1| carbamoyl-phosphate synthase large subunit [Clostridium cf. saccharolyticum K10] Length = 1088 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 30/288 (10%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C L+ G++V ++ V +L KP G Sbjct: 577 CVQVLKGLGYEVVIVNNNPETVSTDFDTADRLYFEPLTTEDVKNILQAEKPCGVVVAFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A ++ P +++ + + Sbjct: 637 QTAIRLTRHLAENGVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P +I+ + I + + N + +LI++Y++G E+ Sbjct: 697 AESVGYPVLMRPSYVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + + + + +++ + + Sbjct: 757 AIYDGTDILLPGIMEHVERSGIHSG---DSIAIYPAMHLTPETEEKIAETTKKLCEGLNA 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 GI ++ +++ +E+N + T P ++ G +L Sbjct: 814 VGIVNVQYIV--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + ++ ++ + +V ++ KPD + Sbjct: 30 GAQACRALREEELEIVLVNSNPATIMTDHMMADRIYIEPLTLETVKRIIEKEKPDSILSG 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G +Q LE + S + D+ K + S G P PS + Sbjct: 90 LGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQLFKDAMESIGQPCVPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q+L+E+ Sbjct: 150 NETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREIARNGLALSPIHQILVEKG 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + +F + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVIRDRAGNCITVCSMENFDPVGIHTGDSIVIAPAVTLADRE-YQMLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LRIVDTLQVEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|314933378|ref|ZP_07840743.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae C87] gi|313653528|gb|EFS17285.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae C87] Length = 1057 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q L + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEIVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 91/285 (31%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ +P G Sbjct: 580 AIQDAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQEEIDTLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F+ V+ LE+N + T P ++ +L Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQL 855 >gi|258616259|ref|ZP_05714029.1| carbamoyl phosphate synthase large subunit [Enterococcus faecium DO] Length = 513 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|257889570|ref|ZP_05669223.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410] gi|257825930|gb|EEV52556.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410] Length = 1061 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETILIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|257884645|ref|ZP_05664298.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501] gi|257820483|gb|EEV47631.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501] Length = 1061 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|69247604|ref|ZP_00604415.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Enterococcus faecium DO] gi|257878232|ref|ZP_05657885.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933] gi|257880988|ref|ZP_05660641.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502] gi|257892490|ref|ZP_05672143.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408] gi|260559782|ref|ZP_05831961.1| carbamoyl-phosphate synthase [Enterococcus faecium C68] gi|293559354|ref|ZP_06675896.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1162] gi|293569852|ref|ZP_06680939.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1071] gi|294621724|ref|ZP_06700888.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium U0317] gi|314939735|ref|ZP_07846957.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133a04] gi|314941764|ref|ZP_07848641.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133C] gi|314948309|ref|ZP_07851701.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0082] gi|314952397|ref|ZP_07855404.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133A] gi|314991984|ref|ZP_07857437.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133B] gi|314995718|ref|ZP_07860808.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133a01] gi|68194772|gb|EAN09250.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Enterococcus faecium DO] gi|257812460|gb|EEV41218.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933] gi|257816646|gb|EEV43974.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502] gi|257828869|gb|EEV55476.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408] gi|260074006|gb|EEW62329.1| carbamoyl-phosphate synthase [Enterococcus faecium C68] gi|291587600|gb|EFF19477.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1071] gi|291598733|gb|EFF29786.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium U0317] gi|291606718|gb|EFF36110.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1162] gi|313590109|gb|EFR68954.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133a01] gi|313593419|gb|EFR72264.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133B] gi|313595514|gb|EFR74359.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133A] gi|313599442|gb|EFR78285.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133C] gi|313640964|gb|EFS05544.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0133a04] gi|313645290|gb|EFS09870.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium TX0082] Length = 1061 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|294507128|ref|YP_003571186.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8] gi|294343456|emb|CBH24234.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8] Length = 333 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 18/289 (6%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAIL 72 + + A+A+E G ++ + L L D A N+ G + V +L Sbjct: 30 IETVDTLAAAVEHLGHTPVRVGTAADLRDRLGGGLSLDAAINITEGAHSRNREAYVPILL 89 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVI 130 E+ +P S L ++++DK +K +V++ +P P + + + P + Sbjct: 90 EMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFV 149 Query: 131 KPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187 KP G+S GI ++ ++ + + ++ D + G E T V+G Sbjct: 150 KPRYEGTSKGITPDSKVEDVAALRGAVDRITTTYDQDAVAEPFVAGGGEFTVAVVGHDPP 209 Query: 188 DVTEIAVPKSDFY---------SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + + + + L + + +Q L+ A + Sbjct: 210 EALPVLQRGVEPTTGLGLHVLEHRGAPTADRDWEYELRGTLAPALEDRLQALSRRAFDTL 269 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 CR +R+DF D ++LEIN P P F +A G + + Sbjct: 270 DCRDFARADFRVDG-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVD 317 >gi|323489517|ref|ZP_08094744.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Planococcus donghaensis MPA1U2] gi|323396648|gb|EGA89467.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Planococcus donghaensis MPA1U2] Length = 1062 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V I+ + V +L +PD Sbjct: 30 GTQACLALKEEGYRVILINSNPATIMTDTEVADKVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +EI T + A D R+ VP I Sbjct: 90 LGGQTGLNMAIELDESGILDELNIEILGTKLEAIHKAEDRDLFRTLMNELGEPVPDSDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + + + + ++ Q L+E+ Sbjct: 150 HNMTEAENFVDRVGYPVIVRPAFTLGGTGGGICHDYEQLKEIVASGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDKNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPFSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 93/280 (33%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIVDLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T A + +K + P+ + + + Sbjct: 640 INLAEKLEQNGVKILGTSLEDTDRAENRNKFEAALHEIGIPQPLGKTAVNTEEAIIIAGD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + + +L+++Y+ GIE+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNEEDLKHYMEHAVEASPEHPVLVDRYLTGIEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P I ++ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPTQNISNELLETLVDYTTRLAKGLNIVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ +VF +E+N P M+ ++ P Sbjct: 816 LLNIQYVI--SKGEVFVIEVNPRSSRTVPFMSKITSIPMA 853 >gi|186475639|ref|YP_001857109.1| carbamoyl phosphate synthase large subunit [Burkholderia phymatum STM815] gi|184192098|gb|ACC70063.1| carbamoyl-phosphate synthase, large subunit [Burkholderia phymatum STM815] Length = 1084 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTAEVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +L + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + ++ V+ P VI+P G + + + + Sbjct: 149 AHSMEEAMHVHAEIAAFTGGSGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLDLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGDTVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSNETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVIGLMNVQFAIQQVPQADGTKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|325525888|gb|EGD03599.1| carbamoyl phosphate synthase large subunit [Burkholderia sp. TJI49] Length = 1084 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +LE + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + V+ M P VI+P G + + + + Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|296116671|ref|ZP_06835281.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976883|gb|EFG83651.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter hansenii ATCC 23769] Length = 1085 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++A KPD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEFVERIIAREKPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + + D+ + ++ + + G+ S++ Sbjct: 89 TMGGQTALNTAMALDKSGFLKTHNVELIGANAEVIDRAEDRQKFREAMDAIGIESPRSVI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P VI+P G + + + + ++LIE+ Sbjct: 149 AHTLAEAREALKQVGLPSVIRPSFTMGGSGGGIAYNREEFDRIVTSGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LACLRKIGVETGGSNVQFGINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 564 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 616 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + ++ G + + + T + + Sbjct: 617 RLYFEPLTAEDVIALIRREQENGTVLGCIVQYGGQTPLKLSHALEMAGIALLGTPADAID 676 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P D I P V++P + ++ Sbjct: 677 RAEDRERFQAMLHKVGLRQPENGIARSPTEAEDVADRIGYPVVVRPSYVLGGRAMEIVHD 736 Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 S+ + + D D IE + D + + + Sbjct: 737 RASLQRYMRVALQLAGHDVASGPVLIDRYLNDAIEADVDCIADGTDVYVAGVMEHIEEAG 796 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + I E++ + +G G+ + +F LE Sbjct: 797 IHSG---DSACSLPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAIKGHD--IFVLE 851 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 852 VNPRASRT----VPFVAKATGVPVAKI 874 >gi|90020774|ref|YP_526601.1| putative allophanate hydrolase [Saccharophagus degradans 2-40] gi|89950374|gb|ABD80389.1| Allophanate hydrolase subunit 2 [Saccharophagus degradans 2-40] Length = 1209 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 16/183 (8%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P ++K GG +G+ V + + + +++ Sbjct: 146 WAKEVGYPIMLKSTAGGGGIGMQVCHSESQLQQAWDSVKRLSANYFSNDGVFLEKYIADA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + + + PA + + ++ A ++ Sbjct: 206 RHIEVQIFGDGAGTAVAFGERDCSAQRRNQKVIEETPAPKLSEAVRADLCATAQRLMASV 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 R +F+FD K ++LE+N + G+T ++ G +L+ WM++ Sbjct: 266 NYRNAGTVEFIFDAKENKFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVEWMIK 314 Query: 295 DAS 297 A+ Sbjct: 315 QAA 317 >gi|266624707|ref|ZP_06117642.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi DSM 13479] gi|288863423|gb|EFC95721.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi DSM 13479] Length = 1075 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + ILE + + A D++ K+ ++ G+ + S Sbjct: 89 NLGGQSGLNLCSELNKAGILEKYNVKVIGVQVDAIERGEDRVEFKKAMNELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 149 AYSVDEALKIADQLGYPVVLRPAYTMGGAGGGLVYNRDELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + I V + ++ + I + K +Q Sbjct: 209 SILGWE-ELELEIVRDSEGRMITVCFIENIDPLGVHTGDSFCSAPMLTISPECQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + +P G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEQPAGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R+ +P + + Sbjct: 641 LNLAADLEKNGVKILGTPPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAIAAK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMIGYMKAAVGVTPDRPILIDRFLN---HAMECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P +I + + ++ + + G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVQISPENVETIKEYTRKIAEEMHVVG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + + +V+ LE N + T P ++ L ++ Sbjct: 818 LMNMQYAI--ENDRVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862 >gi|172060236|ref|YP_001807888.1| carbamoyl phosphate synthase large subunit [Burkholderia ambifaria MC40-6] gi|171992753|gb|ACB63672.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria MC40-6] Length = 1084 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +LE + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + V+ M P VI+P G + + + + Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|120611279|ref|YP_970957.1| carbamoyl-phosphate synthase large subunit [Acidovorax citrulli AAC00-1] gi|120589743|gb|ABM33183.1| carbamoyl-phosphate synthase large subunit [Acidovorax citrulli AAC00-1] Length = 1056 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%) Query: 21 ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59 AL + G+KV I DV ++V ++A +PD + Sbjct: 2 QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61 Query: 60 GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113 G D +L ++ + A + D+++ K ++ G+ S Sbjct: 62 GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q + P VI+P G + + + + ++LLIE+ + Sbjct: 122 MDEAWAVQRSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G + + D I + + + + + Sbjct: 182 GWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G S F +P ++ +E+N P ++ S + G+ ++ + Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 92/299 (30%), Gaps = 34/299 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPTGVIVQY 613 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + E + I T ++ +A ++ + P + + Sbjct: 614 GGQTPLKLALGLEAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAL 673 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 674 EKAATLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 732 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + + +S ++ + P + E++R + + Sbjct: 733 CDVDCLRDPEGKVFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTAAMAEGL 792 Query: 239 GCRGISRSDFLFDPLSRK------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 793 NVVGLMNVQFAIQEREENGARQDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 847 >gi|325288860|ref|YP_004265041.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964261|gb|ADY55040.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus glycolicus DSM 8271] Length = 1062 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 84/297 (28%), Gaps = 31/297 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 S A AL AG + I D D V VL KP+ Sbjct: 573 SVHAV-KALRKAGVESIIINNNPETVSTDFDTSDRLYFEPLTLEDVSEVLNKEKPEGVIV 631 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G I T A P + Sbjct: 632 QFGGQTAIGLCKGLAARGYRILGTTVEDTDRAEERGIFDHVLQELGAKRPQGGCVSTVEE 691 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +++P + ++ I + + + G Q+ ++QY++G E Sbjct: 692 AEKLSEKIGFPLIVRPSYVLGGRAMQIVYDRADIKRIVQNAFAEFPGQQIWMDQYLEGKE 751 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + D + + +S + P + + + L + Sbjct: 752 VEVDAISDGETVCIPGIMEHLERAG---VHSGDSIAVYPPQTLAQKMENRISDLTVSIAR 808 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +G+ ++ +V+ LE+N + T P ++ G +L ++ Sbjct: 809 SLRIKGLLNIQYVI--YKDEVYVLEVNPRSSRT----VPFLSKVTGVPVVDLATRVI 859 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + G + ++ + + ++ KPD Sbjct: 29 GTQACRALREEGLETVLVNSNPATIMTDAEVADKIYIEPLTIEFLERIIEKEKPDGLLPT 88 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 + G G + Q IL+ + + + + + + D+ + +P + Sbjct: 89 MGGQTGLNLAFQLSQSGILQRCGVTLLGTPLDSISKAEDREHFRNLMHEIRQPIPESTIV 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + +++ + + Q+LIE+ Sbjct: 149 SEVGEAVAFAEEIGYPLIVRPAFTLGGTGGGIAGDRKTLEEIAASGINASMIGQILIERS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + IAV + ++ + + + ++ + Sbjct: 209 VAGW-KEIEFEVLRDGMDSCIAVCHMENMDPVGVHTGDSIVVAPCQTLTDKEIQMLRTAS 267 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F A+G G F +P++ + + +E+N P ++ S + GY ++ Sbjct: 268 FNIVSALGIEGGCNVQFALNPVNDEYYVIEVN--PRLSRSS--ALASKATGYPIAKIAAK 323 Query: 292 M 292 + Sbjct: 324 I 324 >gi|153940513|ref|YP_001391099.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum F str. Langeland] gi|167006438|sp|A7GE89|CARB_CLOBL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|152936409|gb|ABS41907.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum F str. Langeland] gi|295319142|gb|ADF99519.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum F str. 230613] Length = 1068 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KPD G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P + DI +++ IG Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 106/318 (33%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V I+ + V V+A +PD Sbjct: 29 SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ L+ + + I + D+ + V+S PV S Sbjct: 89 GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTDMEDGKDFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +IG +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323 Query: 291 WM--------VEDASCLR 300 + +++A + Sbjct: 324 KIALGYTLDEIKNAVTEK 341 >gi|121594731|ref|YP_986627.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42] gi|120606811|gb|ABM42551.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42] Length = 1053 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%) Query: 21 ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59 AL + G+KV I DV ++V ++A +PD + Sbjct: 2 QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61 Query: 60 GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113 G D +L ++ + A + D+++ K ++ G+ S Sbjct: 62 GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 Q + P VI+P G + + + + ++LLIE+ + Sbjct: 122 MDEAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 G + + D I + + + + + Sbjct: 182 GWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G S F +P ++ +E+N P ++ S + G+ ++ + Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 90/295 (30%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP+ Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 613 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 614 GGQTPLKLALGLEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEAL 673 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L+++++ + Sbjct: 674 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 732 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + +S ++ + P + + E++R + Sbjct: 733 CDVDCVRDASGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 792 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P ++ G ++ Sbjct: 793 NVVGLMNVQFAIQETDDGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 843 >gi|295398280|ref|ZP_06808322.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans ATCC 11563] gi|294973419|gb|EFG49204.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans ATCC 11563] Length = 1064 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P+ G Sbjct: 579 KAIQQAGYEAIIMNNNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPEGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLHALGIPILGTTVEDLDRAEDRDLFEQALTDLGIPQPEGFTAMSVEDALQIPS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ ++ D + + + + +LI+ YV G E+ + Sbjct: 699 KIGYPVLVRPSYVLGGRGMEIVDNDADLRSYMEDAMIASPDRPILIDHYVVGTEVEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + + ++ + + C G Sbjct: 759 CDGENVLIPGIMEHIERSG---VHSGDSMAVYPSQSLSDEVKATIVDYTERLSFGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFIV--QDGQVYVIEVNPRASRT----VPFLSKVTGIPMAQVATRAI 860 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V +L +PD Sbjct: 30 GTQACLSLREEGYEVVLVNSNPATIMTDTEIADKVYIEPITLEFVSRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + ++ T + A D R+ + VP + Sbjct: 90 LGGQTGLNMAIELANDGILDELGIQLLGTKLSAIDQAEDRDLFRNLMRELNEPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + + + + + +Q LIE Sbjct: 150 HTVDEALAFAEQAGYPVIVRPAFTMGGTGGGICNDPAELREIVAKGLKLSPVNQCLIEIS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGYKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTLTLTDYE-NQILRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNVQLALDPNSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|293553493|ref|ZP_06674121.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1039] gi|291602370|gb|EFF32594.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1039] Length = 1061 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKKVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|255030676|ref|ZP_05302627.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28] Length = 124 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA 54 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 >gi|254994415|ref|ZP_05276605.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064] Length = 64 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 3 VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA 54 +L GG S+E EVSL + + +AL+ F+ + I + + L K D Sbjct: 7 LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61 >gi|288553133|ref|YP_003425068.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus OF4] gi|288544293|gb|ADC48176.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus OF4] Length = 1089 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V I+ + V ++ +P Sbjct: 30 GTQACQALKEEGYEVILINSNPATIMTDTTMADRVYIEPITLEFVSRIIRQERPCGIVAT 89 Query: 58 LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A ++ R+ + VP + Sbjct: 90 LGGQTGLNMAMELDESGILDAYNIELLGTDLKAIKQAEDREQFRALMNELNEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G ++ D+ + + ++ Q L+E+ Sbjct: 150 HTVEEAQVFVRKIGYPIIVRPAYTLGGTGGGIVHNDEELIEIVSSGLKYSPVTQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEVEYEVMRDASDQAIVVCNMENFDPVGVHTGDSIVFAPSQTLTDRDYQMLRNSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F D S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNVQFALDADSDQYYIIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V V+ H KP+ G Sbjct: 580 AIKEAGYEAIIMNNNPETVSTDFSTSDKLYFEPLTVEDVMHVVNHEKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q ++I T + A DK + P+ + + Sbjct: 640 INLADQLAARGVKIIGTSLEDMDRAEDRDKFEQTLMALDIPQPLGKTATSVEQAVKIAAN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + N +LI++Y+ G EL + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMTHAVKINPKHPVLIDRYLTGKELEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P +P + +++ + + G+ Sbjct: 760 DGENVYIPGMMEHIERAG---VHSGDSIAVYPPQTVPDHLKQKIIDRTIAIARGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +++ +V+ LE+N + T P ++ G S L Sbjct: 817 LNIQYVWHQ--DEVYVLEVNPRSSRT----VPFLSKITGVSMANLATK 858 >gi|127513766|ref|YP_001094963.1| carbamoyl phosphate synthase large subunit [Shewanella loihica PV-4] gi|126639061|gb|ABO24704.1| carbamoyl-phosphate synthase large subunit [Shewanella loihica PV-4] Length = 1073 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L + + A + D+ R + G+ + Sbjct: 89 TMGGQTALNCALRLEAEGVLAEFNVDMIGATADAIDKAEDRSRFDAAMKKIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + Q + ++LLI++ Sbjct: 149 ARSMEDAYEVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNSIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + S Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L++ ++D E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDHFLDNATEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S + + P + +I +++ +G G Sbjct: 767 CDGTTVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDQMREQVRKLAMELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--QDNTIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|223043725|ref|ZP_03613768.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis SK14] gi|222442822|gb|EEE48924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis SK14] Length = 1057 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q L + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ +P G Sbjct: 580 AIQDAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTKEEIDTLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRSI 860 >gi|256419971|ref|YP_003120624.1| carbamoyl phosphate synthase large subunit [Chitinophaga pinensis DSM 2588] gi|256034879|gb|ACU58423.1| carbamoyl-phosphate synthase, large subunit [Chitinophaga pinensis DSM 2588] Length = 939 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A +L + G +V I+ + S+ +L + D Sbjct: 29 SGSQAARSLREEGIRVVLINSNPATIMTDPMMADKVYLLPLTVESIEQILEEQQIDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 + G + + E + I A + D+ + +Q + V + Sbjct: 89 TMGGQTALNLCKEVDELGIWEKFNVRLIGVDIKAIDKAEDREQFRQWMIRLGVPVAPAKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P VI+P G + + + L + + ++L+E+ Sbjct: 149 ANSFLEGKEFAQEIGFPLVIRPSFTLGGTGGGFVHSKEDLDEALQRGLQASPIHEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 AVLGWKEFELELLRDKNDNVVIICTVENLDPMGVHTGDSITVAPAMTLSDTAFQDMRNKA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +EIN P ++ S + GY ++ Sbjct: 269 IMMMRDLGNFAGGCNVQFSLNPENEELIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 31/296 (10%) Query: 23 ASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGN 61 A+++ G+ + D D + ++ KP L G Sbjct: 583 LQAIQECGYDAIMVNCNPETVSTDFDMANKLYFEPVFWEHLWEIIELEKPVGVIVQLGGQ 642 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + + I T + A + P + ++ Sbjct: 643 TALKLAKRLEENGIRIIGTSFDNMDIAEDRGRFSELLEDLKIPFPKYGTAYNTDDAIEVA 702 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +++P + ++ ++ + +L G+++LI+ ++D Sbjct: 703 KEVGYPVLVRPSYVLGGQRMRIVINEEELESSVLSLLKHLPGNKILIDHFLD---RCQEA 759 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240 D D V + S +S VLPA ++ A +A+ Sbjct: 760 EIDGIFDGENFHVMGVMEHIEPAGIHSGDSNAVLPAFNLSPMEVTTMEYYAEKIARALDI 819 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 RG+ F +VF +E N + T P +A + + ++ A Sbjct: 820 RGLINIQFAI--KGGQVFVIEANPRASRTT----PFIAKAYQVPYLNIATKVMLGA 869 >gi|257898605|ref|ZP_05678258.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15] gi|257836517|gb|EEV61591.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15] Length = 1061 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + ++ + S + Q LIE+ Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRTVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELGIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|297180875|gb|ADI17080.1| carbamoylphosphate synthase large subunit (split gene in mj) [uncultured alpha proteobacterium HF0010_30A23] Length = 986 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYVEPITPEMVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + LE + + + + D+ + + + G+ S Sbjct: 89 TMGGQTGLNTGLALHDDGTLEKYGVELIGARAESIEKAEDRQKFRDAMDKIGLESPRSLL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D+ P +++P G + + L + ++L+E+ Sbjct: 149 VTTMEQAEDALAKTGLPAILRPSFTLGGEGGGICYNREEFLEMLAGGLRLSPVTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + ++ Sbjct: 209 SILGWKEFEMEVVRDHADNCIIVCSIENIDPMGVHTGDSITVAPSLTLTDKELQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPDNGRLIVIEMN--PRVSRSS--ALASKATGFPIANIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +++P G+ ++ Q + + ++ + + +LI+ Y D IE+ Sbjct: 672 AEAIGYPVLLRPSYVLGGRGMEIVNDTQRLRKYVSEAVKVSGDNPVLIDSYLRDAIEVDV 731 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + ++ + P + + ++++ A A+ Sbjct: 732 DAICDGEQVYIAGIMEHIEEAGIHSG---DSACSLPPYSLSDALVEQLKAQAEKLAVALN 788 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F ++ LE+N + T P +A G ++ Sbjct: 789 VHGLMNVQFAV--QGEAIYVLEVNPRASRT----VPFVAKATGVPVAKIAAR 834 >gi|196247705|ref|ZP_03146407.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. G11MC16] gi|196212489|gb|EDY07246.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. G11MC16] Length = 1065 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + VQ +LE + + + A + D+ + + VP + Sbjct: 90 LGGQTGLNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LNIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 90/296 (30%), Gaps = 30/296 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIELEQPVGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T + A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDVDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + + N +LI++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + D+ +++ + + Sbjct: 757 AISDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSADVIEKIVDYTVKLARGLRI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ F+ V+ LE+N + T P ++ G L + A Sbjct: 814 VGLLNIQFVISDSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863 >gi|138894679|ref|YP_001125132.1| carbamoyl phosphate synthase large subunit [Geobacillus thermodenitrificans NG80-2] gi|134266192|gb|ABO66387.1| Carbamoyl-phosphate synthase, large subunit [Geobacillus thermodenitrificans NG80-2] Length = 1065 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + VQ +LE + + + A + D+ + + VP + Sbjct: 90 LGGQTGLNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LNIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 30/296 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIELEQPVGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T L A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + + N +LI++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + D+ +++ + + Sbjct: 757 AISDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSADVIEKIVDYTVKLARGLRI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ F+ V+ LE+N + T P ++ G L + A Sbjct: 814 VGLLNIQFVISDSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863 >gi|262376632|ref|ZP_06069860.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii SH145] gi|262308342|gb|EEY89477.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii SH145] Length = 1076 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPITWQTVAAIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDEHGILEKFNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKADV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ I P +I+P G + + + + QLLI++ Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQLLRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPKGIIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + M Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ D+ + L + ++ +L+++++D IE+ Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNVQFAVKGED--VYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|51246948|ref|YP_066832.1| carbamoyl-phosphate synthase, large subunit [Desulfotalea psychrophila LSv54] gi|50877985|emb|CAG37825.1| probable carbamoyl-phosphate synthase, large subunit [Desulfotalea psychrophila LSv54] Length = 1073 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + V V+A +PD Sbjct: 29 SGAQAVKALKEEGYEVILINSNPATIMTDPELADATYIEPITPECVTKVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ++ +LE + + I + + + + + G+ V S + Sbjct: 89 TLGGQTALNTAIKLAELGVLEQYNVELLAADIAVIKKAEGREEFRDAMHAIGLNVPESAI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ I P +++P G + Q + + ++++E+ Sbjct: 149 VHDLESAMAAGEDIGFPIIVRPSFTLGGTGGGIAYNRQELEELCTSGLDLSMTTEIMVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + + Sbjct: 209 SLLGWKEFELEVMRDKNDNVVIICSIENIDAMGVHTGDSITVAPAQTLTDREYQEMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAIIREIGVETGGSNVQFAVNPADGELMIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 91/294 (30%), Gaps = 31/294 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D V ++ KP G Sbjct: 587 ALKELGVESIMINSNPETVSTDYDTSDKLYFEPLTREDVLNIIEQEKPYGVIVQFGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + I T + A + + P ++ + S + Sbjct: 647 LNLAVPLENAGIRIIGTQPDAIDRAEDRKRFQQFLQKLGLRQPENDTVSTLEEALASANR 706 Query: 124 ISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P V++P G IV + + L+ + + IE+ + Sbjct: 707 IGYPVVVRPSYVLGGRNMRIVYTDQGIRDFMIAVGGTNLEHPILVDKFLQEAIEVDVDAL 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + L++ KE++ + + +G G Sbjct: 767 CDGEDTIIGGIMEHIEEAGIHSG---DSSCVLPPHTLSLELVKEIKAASKAMAKELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + F ++V+ LE+N + T P ++ G +L ++ A Sbjct: 824 LMNVQFAI--KDKQVYILEVNPRASRT----VPFVSKATGVPLAKLATKVMMGA 871 >gi|229552254|ref|ZP_04440979.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258539664|ref|YP_003174163.1| carbamoyl-phosphate synthase large subunit [Lactobacillus rhamnosus Lc 705] gi|229314390|gb|EEN80363.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257151340|emb|CAR90312.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus rhamnosus Lc 705] Length = 1060 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + + + Q+LIE+ Sbjct: 149 ANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLNLSPVTQVLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEIEFEVMRDASDSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLAKRGIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ +A+ C G Sbjct: 759 SDGETVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRALNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFIIHQ--GKAYVIEVNPRASRT----VPFLSKVTNVKLAQV 855 >gi|199598366|ref|ZP_03211785.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus HN001] gi|258508451|ref|YP_003171202.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus rhamnosus GG] gi|199590685|gb|EDY98772.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus HN001] gi|257148378|emb|CAR87351.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus rhamnosus GG] gi|259649764|dbj|BAI41926.1| carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus GG] Length = 1060 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V +L PD Sbjct: 29 SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + ++ IL+ L I + + A + D+ ++ VP Sbjct: 89 TIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQKLHEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + + + Q+LIE+ Sbjct: 149 ANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLNLSPVTQVLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + + ++ + + + ++ Sbjct: 209 SIAG-YKEIEFEVMRDASDSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F D S K + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + Sbjct: 639 AINLAEPLAKRGIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + ++ S +H +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHNADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + + P DI ++ +A+ C G Sbjct: 759 SDGETVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRALNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ K + +E+N + T P ++ ++ Sbjct: 816 LMNVQFIIHQ--GKAYVIEVNPRASRT----VPFLSKVTNVKLAQV 855 >gi|293570486|ref|ZP_06681541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E980] gi|291609432|gb|EFF38699.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E980] Length = 1061 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|257887481|ref|ZP_05667134.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733] gi|257895976|ref|ZP_05675629.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12] gi|293377434|ref|ZP_06623636.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium PC4.1] gi|257823535|gb|EEV50467.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733] gi|257832541|gb|EEV58962.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12] gi|292643952|gb|EFF62060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium PC4.1] Length = 1061 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|227551410|ref|ZP_03981459.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330] gi|227179419|gb|EEI60391.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330] Length = 1069 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ V +L +PD Sbjct: 38 GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 97 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 98 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 157 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 158 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 217 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 218 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 276 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 277 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 332 Query: 292 M 292 + Sbjct: 333 I 333 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 587 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 646 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 647 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 706 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 707 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 767 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 824 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 868 >gi|320353055|ref|YP_004194394.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus propionicus DSM 2032] gi|320121557|gb|ADW17103.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus propionicus DSM 2032] Length = 1074 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + V V+ +PD Sbjct: 29 SGAQAVKALKEEGYEVVLINSNPATIMTDPGLADRTYIEPITPECVAKVIERERPDALLP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ + ++ A ++ R VP Sbjct: 89 TLGGQTGLNTAIKVAELGVLERYGVELLAANIEVIRKAEGREEFRDAMRKIGLKVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M + I P +++P G V + + + ++++E+ Sbjct: 149 VHTIDEAMAAGERIGFPIIVRPSFTLGGTGGGVAYNRAELNKMVTAGLDLSMTTEVMLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + + Sbjct: 209 SLLGWKEYELEVMRDRNDNVVIICSIENVDAMGVHTGDSITVAPAQTLTDREYQEMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 10/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD G + V + + I T + A + + Sbjct: 623 EDVLNIIEREKPDGVIVQFGGQTPLNLAVPLAKQGVPIIGTSPDAIDRAEDRKRFQQFLQ 682 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + + I P V++P + ++ +Q I + Sbjct: 683 KLGLRQPANGTAHTLDEALAVAGEIGYPVVMRPSYVLGGRDMRIVYNEQGIRSFMAIPGM 742 Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 +L++Q+ D IE+ + D S+ V + + ++ + P Sbjct: 743 SGGEHPVLLDQFLKDAIEVDVDAISDGSMTVIGGIMEHIEEAGIHSG---DSACVLPPHT 799 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + +E+ + +G G+ F + ++ LE+N + T P ++ Sbjct: 800 LSPAMIEEITAATKAMAKELGVIGLMNVQFAV--QGQTLYVLEVNPRASRT----VPFVS 853 Query: 279 AYAGYSFRELLLW 291 G ++ Sbjct: 854 KATGVPLAKIATK 866 >gi|134295355|ref|YP_001119090.1| carbamoyl phosphate synthase large subunit [Burkholderia vietnamiensis G4] gi|134138512|gb|ABO54255.1| carbamoyl-phosphate synthase large subunit [Burkholderia vietnamiensis G4] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|295706345|ref|YP_003599420.1| carbamoyl-phosphate synthase large subunit [Bacillus megaterium DSM 319] gi|294804004|gb|ADF41070.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium DSM 319] Length = 1070 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GAQACIALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + ILE + + + A + D+ + + + VP I Sbjct: 90 LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P +++P G + +Q + + + Q L+E+ Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 97/294 (32%), Gaps = 35/294 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L +A K + P+ ++ + Sbjct: 640 INLADELEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVVVAKE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMEHAVKVHADHPVLIDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D+ + + + G+ Sbjct: 760 DGETVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 F+ +VF LE+N P ++ ++ P G S REL Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868 >gi|294500996|ref|YP_003564696.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM B1551] gi|294350933|gb|ADE71262.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM B1551] Length = 1070 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GAQACIALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + ILE + + + A + D+ + + + VP I Sbjct: 90 LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P +++P G + +Q + + + Q L+E+ Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 97/294 (32%), Gaps = 35/294 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L +A K + P+ ++ + Sbjct: 640 INLADELEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVIVAKE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + + +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMKHAVKVHADHPVLIDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D+ + + + G+ Sbjct: 760 DGETVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 F+ +VF LE+N P ++ ++ P G S REL Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868 >gi|85374184|ref|YP_458246.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594] gi|84787267|gb|ABC63449.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594] Length = 336 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 11/256 (4%) Query: 52 DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D F +L+ G + L+ + + IPY + L DK SK V + GVP Sbjct: 73 DFVFPLLNRGGFVNSEMLIPTLCNMHRIPYLGAMPFLRGLGDDKSVSKLVSTHAGVPTAD 132 Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-- 163 R + + +VIKP +S GI Q + + H Sbjct: 133 WFCFRRGAPVEEASLPAAPDGRWVIKPNASSASWGISDAFDFQGVANAIANIHGQGHDAI 192 Query: 164 -DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL--PAKIP 220 + L V +T A + ++Y K + +T Sbjct: 193 VEPYLDGYDVQCAFITIDGEARALPMLWYEREDTQKLWTYYEKRDLVQNTEKAALKTFDN 252 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 D + +A + + R +F D + ++EIN+ + + + A + Sbjct: 253 PDFAPLITDMARKVARELLPFDYGRIEFRVDLEKGDINFIEINLNCNLWSEKVMAKAAKF 312 Query: 281 AGYSFRELLLWMVEDA 296 AG+S +LL ++ ++ Sbjct: 313 AGFSHADLLETLLAES 328 >gi|317124732|ref|YP_004098844.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum DSM 43043] gi|315588820|gb|ADU48117.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum DSM 43043] Length = 1128 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L + G +V ++ + V ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEFADATYIEPITPEFVEAIIAKERPDAVLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G +LE P + + A L D+ + K VV CG S++ Sbjct: 89 TLGGQTALNCAIALHENGVLERYNCPLIGASVEAIQLGEDRQKFKGVVERCGAESARSVI 148 Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +S P V++P LG + + ++ ++L+E+ Sbjct: 149 CHTMEECLAAADELSYPVVVRPSFTMGGLGSGFAYDEDDLRRIAGAGLQYSPVTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + + Sbjct: 209 SILGWKEYELEVMRDHRDNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQRLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVETGGCNIQFAVNPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 M Sbjct: 325 KM 326 >gi|167625073|ref|YP_001675367.1| carbamoyl phosphate synthase large subunit [Shewanella halifaxensis HAW-EB4] gi|167355095|gb|ABZ77708.1| carbamoyl-phosphate synthase, large subunit [Shewanella halifaxensis HAW-EB4] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELESRGVLKEFNVDMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + Q + ++LLI++ Sbjct: 149 AHTMDEARAVQAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTFEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + S Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLDMKQPENDTVTTVEGAVISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + +I ++ +G G Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQEIQDRMREQVGKLAMELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|254281971|ref|ZP_04956939.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium NOR51-B] gi|219678174|gb|EED34523.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium NOR51-B] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPVEWQTVARIIEKEKPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L + + A + ++ + + + G+ + Sbjct: 89 TMGGQTALNCALKLAERGVLHEHGVEMIGATREAIDKAENREQFDRAMKRIGLETPRADL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + + +LLI++ Sbjct: 149 AHSMEEAFKVLDDIGFPCIIRPSFTMGGSGGGIAYNRDEFEQICTRGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 38/321 (11%), Positives = 103/321 (32%), Gaps = 45/321 (14%) Query: 1 MAVLMGGISS-----ERE---VSLSSGKACASALEDAGFKVSQI---------DVD---- 39 + VL GG + E + V A A+ + G++ I D D Sbjct: 561 IVVLGGGPNRIGQGIEFDYCCV-----HAVL-AMREDGYETIMINCNPETVSTDYDTSDR 614 Query: 40 --------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91 V ++ +P+ G + I T + A Sbjct: 615 LYFEPVSLEDVLEIIDLEQPEGVIVQFGGQTPLKLARALEEAGVPIIGTTPDEIDRAEDR 674 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ + P ++ +++ I P V++P + ++ +++ + Sbjct: 675 ERFQQMINKLGLRQPANTTVRSVDEAIEAARNIGYPLVVRPSYVLGGRAMEIVYREEDLL 734 Query: 152 LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + +L++ ++ IE+ + D V + + +S + Sbjct: 735 RYMRDAVRVSDDSPVLLDSFLSAAIEVDIDAVSDGKDVVIGAIMQHIEQAG---VHSGDS 791 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P + ++ ++ + +G G+ + +++ +E+N + T Sbjct: 792 ACSLPPYNLDAEVQNRMRDIVKQMGIELGVCGLMNVQLAY--QDGEIYVIEVNPRASRT- 848 Query: 271 VSIFPEMAAYAGYSFRELLLW 291 P ++ G S ++ Sbjct: 849 ---VPFVSKAIGLSLAKVAAR 866 >gi|221201964|ref|ZP_03575000.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD2M] gi|221204906|ref|ZP_03577923.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD2] gi|221175763|gb|EEE08193.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD2] gi|221178047|gb|EEE10458.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD2M] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + S+ P VI+P G + + + + Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|221213883|ref|ZP_03586856.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD1] gi|221166060|gb|EED98533.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans CGD1] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + S+ P VI+P G + + + + Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|161525198|ref|YP_001580210.1| carbamoyl phosphate synthase large subunit [Burkholderia multivorans ATCC 17616] gi|189350063|ref|YP_001945691.1| carbamoyl phosphate synthase large subunit [Burkholderia multivorans ATCC 17616] gi|160342627|gb|ABX15713.1| carbamoyl-phosphate synthase, large subunit [Burkholderia multivorans ATCC 17616] gi|189334085|dbj|BAG43155.1| carbamoyl-phosphate synthase large chain [Burkholderia multivorans ATCC 17616] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + S+ P VI+P G + + + + Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|319778421|ref|YP_004129334.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis MCE9] gi|317108445|gb|ADU91191.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis MCE9] Length = 1081 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 92/320 (28%), Gaps = 47/320 (14%) Query: 18 SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56 SG AL+ G+ V I+ +S+ V+ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVIYIEPITWKSLEKVIEIEKPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A A+ + R K + + + + Sbjct: 89 TMGGQTALNCALELAKQGVLEKHGVELIGANAHAIEKAEDRMKFKEAMSSIGLESAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +MD + P VI+P G + + ++ + Sbjct: 149 AHSMDEAWDVQRRIAEEIGTAGFPVVIRPSFTLGGTGGGIAYNPEEFEAICMRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA---- 279 + + G S F +P + ++ +E+N P ++ S A Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPANGRMIVIEMN--PRVSRSSALASKATGFPI 326 Query: 280 -------YAGYSFRELLLWM 292 GY+ ELL + Sbjct: 327 AKVASRLAVGYTLDELLNEI 346 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 95/294 (32%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALSLKQDGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLEIVDIEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G L + I T + A ++ + + P + + Sbjct: 644 GGQTPLKLARDLELNGVPILGTSPESIDIAEDRERFQKLLQKLNLKQPPNRTARTEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ +L+++Y D IE+ Sbjct: 704 TLAKEIGYPLVVRPSYVLGGRAMEIVHDQMDLERYMTAAVKVSNDSPVLLDRYLNDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + +I E++R L +A Sbjct: 764 DVDCICDGNEVFIAGVMEHIEQAG---VHSGDSACSIPPHSLSKEIVDEIKRQTRLMAKA 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + RG+ F S +V+ LE+N + T P ++ G ++ Sbjct: 821 LNVRGLMNVQFAI--QSNEVYVLEVNPRASRT----VPFVSKATGLPVAKIAAR 868 >gi|260497942|ref|ZP_05816059.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_33] gi|260196503|gb|EEW94033.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_33] Length = 1061 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 33 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 92 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 93 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 152 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q LIE+ Sbjct: 153 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLIEKS 212 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 213 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 271 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 272 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 327 Query: 292 M 292 + Sbjct: 328 I 328 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 A++ G++ I+ + V +L KP G Sbjct: 580 AIKAIKKMGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + ++I + + +A D+ + P+ + + + Sbjct: 640 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKN 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ Sbjct: 700 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + +S + + P + + + + + Sbjct: 760 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 816 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ + K++ LE+N + T P ++ G + + + Sbjct: 817 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 863 >gi|307243168|ref|ZP_07525341.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus stomatis DSM 17678] gi|306493429|gb|EFM65409.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus stomatis DSM 17678] Length = 1071 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 94/296 (31%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 S A AL G + I D D V ++ KP+ Sbjct: 577 SVHAVM-ALRKLGIETIIINNNPETVSTDFDTSDKLYFEPLTEEDVYHIIEKEKPEGVIL 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + ++I T + +A +K + P + Sbjct: 636 QFGGQTAIKLAKFLSEKGVKILGTDFKDIDAAEDREKFEDLLESLNINRPKGKGVWSVAE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P +++P G+ + + + L + + + +LI++Y+ G E Sbjct: 696 GVEVATQLGYPVLVRPSYVLGGQGMEITYDEVRLTQYLEDAFDRDPMNPVLIDKYLTGRE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235 + + D + P + S +S + P++ I I ++ + Sbjct: 756 IEVDAICDGKDILI----PGIMEHLERAGVHSGDSITMYPSQGISDKIKDKIYEYTKMMA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 812 LNLNVVGMVNIQFI--EYKDELYIIEVNPRASRT----VPYISKVSGVPIIDLATK 861 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 98/319 (30%), Gaps = 42/319 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLINSNPATIMTDQEIADHIYIEPLTLDFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V ++I T + D R V Sbjct: 89 GMGGQTGLNLAVDLYEAGILDKYGVKIIGTSVESIKKGEDRDTFREVMREIGQPVIESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P V++P G + + ++ + L + Q L+E+ Sbjct: 149 VTTLEEGLAYANRIGYPVVVRPAYTLGGTGGGIAETEEELRETLTHGLELSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229 + G + + + +S V P++ ++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGNCITVCNMENIDPVGVHTGDSIVVAPSQTLSNLEYQMLRT 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + AIG G +P S + +EIN P ++ S + GY ++ Sbjct: 267 ASLDIIDAIGVEGGCNVQLALNPKSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVA 322 Query: 290 LWM--------VEDASCLR 300 + +E+A + Sbjct: 323 AKIALGYTLDEIENAVTKK 341 >gi|314936634|ref|ZP_07843981.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis subsp. hominis C80] gi|313655253|gb|EFS18998.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis subsp. hominis C80] Length = 1057 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G + +Q L+ + + + + + D+ + +++ VPV S +V Sbjct: 90 LGGQTGLNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIV 149 Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 N P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVKILGTSLEDLNRAEDRKEFETLLRKIDVPQPKGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + K ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860 >gi|228474952|ref|ZP_04059680.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis SK119] gi|228270937|gb|EEK12325.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis SK119] Length = 1057 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G + +Q L+ + + + + + D+ + +++ VPV S +V Sbjct: 90 LGGQTGLNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIV 149 Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 N P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVKILGTSLEDLNRAEDRKEFEALLRKIDVPQPKGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + K ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860 >gi|226949085|ref|YP_002804176.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum A2 str. Kyoto] gi|254813561|sp|C1FNY3|CARB_CLOBJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|226840847|gb|ACO83513.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum A2 str. Kyoto] Length = 1068 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KPD G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P + DI +++ IG Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V I+ + V V+A +PD Sbjct: 29 SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ L+ + + I + D+ + V+S PV S Sbjct: 89 GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINGPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +IG +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|168180417|ref|ZP_02615081.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum NCTC 2916] gi|182668854|gb|EDT80832.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum NCTC 2916] Length = 1068 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KPD G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P + DI +++ IG Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V I+ + V V+A +PD Sbjct: 29 SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ L+ + + I + D+ + V+S PV S Sbjct: 89 GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +IG +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|86159932|ref|YP_466717.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776443|gb|ABC83280.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 1067 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 91/306 (29%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + ++ ++ +PD Sbjct: 29 SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + +L+ + + A D+ K+ ++ G+ S + Sbjct: 89 NLGGQTGLNLSSELARKGVLDQYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSEI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + + Q+L+E+ Sbjct: 149 ATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G E + +P ++ + Sbjct: 209 SVLGWEELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTIPP----ELQARL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q A+ AI G + F DP + +V +EIN + T S + G+ Sbjct: 265 QDQAYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSSML 325 Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 82/272 (30%), Gaps = 18/272 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + +PD G + Q + I T + Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLNIARQLEQAGVRILGTSPETID 663 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + P +++P G+ V+ Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDLDEALALAGRMGYPLIVRPSYVLGGRGMEVVHD 723 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ + L +++++ DA D TE VP + Sbjct: 724 EEMLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTEAFVPAVMEHIELAGV 780 Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263 S +S + P + + ++ +G G+ + V+ LE N Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--ADGIVYVLEANPR 838 Query: 264 ---VQPGMTPVSIFPEMAAYA----GYSFREL 288 P ++ V P A G R+L Sbjct: 839 ASRTVPLVSKVCDLPMARIAAQVVLGMRLRDL 870 >gi|254304289|ref|ZP_04971647.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324481|gb|EDK89731.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +L+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGVLDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ V P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLVDLKIPQPLGKTAFDVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|71906578|ref|YP_284165.1| carbamoyl phosphate synthase large subunit [Dechloromonas aromatica RCB] gi|71846199|gb|AAZ45695.1| carbamoyl-phosphate synthase large subunit [Dechloromonas aromatica RCB] Length = 1068 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +L + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLDREGVLAKFNVELIGASKEAIDKAEDRQKFKDAMTKIGLGSAKSAT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q +I P +I+P G + + + + + ++LLIE+ Sbjct: 149 AHSMEEAYQVQAVIGFPTIIRPSFTLGGTGGGIAYNMEEFEIICKRGLEASPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 100/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A A+ + G++ + D D S Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 608 Query: 43 GLVLAHLKPDLAFNVL------------HGNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + + G + + I T + A Sbjct: 609 RLYFEPLTLEDVLEICAIEKPVGVIVQYGGQTPLKLALALEANGVPIIGTTPESIDIAED 668 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + + + Sbjct: 669 RERFQKLLHDLGLKQPPNRTARTEEDALRLAQEIGYPLVVRPSYVLGGRAMEIVHEQKDL 728 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D +E + D + + + +S Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAVECDVDALSDGEEVIIGGVMEHIEQAG---VHSGD 785 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + + E++R L +A+ G+ F V+ LE+N + T Sbjct: 786 SACSLPPYSLSAAVQDELRRQTKLMAKALNVCGLMNVQFAI--KDNDVYVLEVNPRASRT 843 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 844 ----VPFVSKATGLQLAKIAAR 861 >gi|296331128|ref|ZP_06873602.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674283|ref|YP_003865955.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit [Bacillus subtilis subsp. spizizenii str. W23] gi|296151772|gb|EFG92647.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412527|gb|ADM37646.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1071 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + + Q L+E+ Sbjct: 150 HSLEEAENFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK P+ + + Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 IS P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 ISYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ G L ++ Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860 >gi|317154409|ref|YP_004122457.1| D-alanine--D-alanine ligase domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944660|gb|ADU63711.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 337 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 98/300 (32%), Gaps = 24/300 (8%) Query: 20 KACASALEDAGFKVSQIDVDRSVGL---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76 + + L + G+ V ++++ +G L ++P + FN++ D L + Sbjct: 28 RFVSRVLRELGWSVVEVELGSDLGEAVSTLQGIRPGVVFNLVESIMDSDELANLTPVIFR 87 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP--YVIKPLK 134 S++ P+ T + P Y++K Sbjct: 88 KLGLPFTGADSSVLFLTNDKLAAKRHMQSVGLPTPAGVDETGLKRGRFPGPGRYIVKSRC 147 Query: 135 GGS----SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187 + +V K L + + G L E+++DG E + ++ A Sbjct: 148 EHASLGLDETSVVNVKTADELLAAMAARRHKLGGSCLAERFIDGREFSVSLLETAHHASV 207 Query: 188 -----DVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 ++ A Y+ K+ K + +++ A Sbjct: 208 VLGSAEIVFRADMPVKIVGYDAKWEEGSDADLSTVRGFAFRKAEPGLAARLEQTARDCWD 267 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +G G +R DF D + +++N P ++ + F A +G +++ +V+ A Sbjct: 268 EMGLSGYARVDFRVDAE-GALSIIDVNANPCLSENAGFMATARESGRKPSDVISAIVDGA 326 >gi|262369444|ref|ZP_06062772.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046] gi|262315512|gb|EEY96551.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046] Length = 1077 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAQIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + A L + G A+ + R + + + Sbjct: 89 TMGGQTALNCALALDANGILEKYNVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M+ I P +I+P G + + + + QLLI++ Sbjct: 149 AENMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFLEICERGFDLSPTKQLLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEKPKGIIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G I T + A ++ + P + M Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + P V++P + ++ D + L + ++ +L+++++D IE+ Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + ++I E++R + Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSVEIQDEMRRQTVAMAKE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ F V+ LE+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQFAVKGED--VYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|187735745|ref|YP_001877857.1| carbamoyl-phosphate synthase, large subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425797|gb|ACD05076.1| carbamoyl-phosphate synthase, large subunit [Akkermansia muciniphila ATCC BAA-835] Length = 1067 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 90/303 (29%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETAPRTYIEPITPEFVEKIIIREKPDALLP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 L G + ++ + I A+A ++D+ + + + + + + Sbjct: 89 TLGGQTALNCAMELHRSGVLEREKVRMIGANANAIDRGEDRNLFKEAMLRIGLDVPRSGI 148 Query: 117 TMDSQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +++P +G V + + ++LIE Sbjct: 149 AHTMEEARRVAGDIGTFPLIVRPAFTLGGMGGGVAYNKTEFEEICARGLDLSPVSEILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + + + + + + Sbjct: 209 ESLIGWKEFEMEVMRDRADNCVVICSIENIDPMGVHTGDSITVAPIQTLTDREYQAMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + ++ +E+N P ++ S + G+ +L Sbjct: 269 SFAVIREIGVETGGSNIQFAINPANGRMIVIEMN--PRVSRSS--ALASKATGFPIAKLA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KPD G Sbjct: 579 ALREMGYETIIVNSNPETVSTDYDSSDKLFFEPLTLEDVLHICEQEKPDGVIVQFGGQTP 638 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + + + Sbjct: 639 LNLANALEAHGVPIIGTSPRAIDLAEDREHFSALLKELGLKQAEAGTATNVEDAAAIAAR 698 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P +++P G+I++ +++ + + ++ + +LI+++++ +E+ V+ Sbjct: 699 IGYPVLLRPSFVLGGRGMIIVYEEKELRRYMNEAVEASEERPVLIDRFLENAVEIDVDVI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +++ + I + ++KE+ R + + G Sbjct: 759 ADRERAVIGAIMQHVEPAGIHSG---DSASMIPAMGISMKMHKEITRASKELASKLNVCG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F +++ +E+N + T P ++ G +L Sbjct: 816 LMNIQFAV--KDEQLYVIEVNPRASRT----VPFVSKSIGKPLAKL 855 >gi|73662878|ref|YP_301659.1| carbamoyl phosphate synthase large subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82592666|sp|Q49WY4|CARB_STAS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|72495393|dbj|BAE18714.1| carbamoyl-phosphate synthase large subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1057 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDNEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ GVPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGELEANNVKLLGTELESIQQAEDRELFRTLMNDLGVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D + ++ Q LIE+ Sbjct: 150 NTVEQAFAFKEEVGYPLIVRPAFTMGGTGGGICHNDAEFKEIVTNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ ++ + V ++ +P G Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIIDLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHDVKILGTSLEDLNRAEDRKEFEALLHTIDVPQPNGKTATSPQEALENARS 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELEDYMNQAVKASPDHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLKQEEMTTLEDFTIRLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITNIQMAQLAMRAI 860 >gi|330506389|ref|YP_004382817.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii GP-6] gi|328927197|gb|AEB66999.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii GP-6] Length = 1070 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+K+ ++ + + ++ +PD Sbjct: 29 SGTQACKALKALGYKIVLVNSNPATIMTDPGMADATYIEPLNVERLAQIIEKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + IL+ + + A D++ K+ ++S G+ V S Sbjct: 89 NLGGQNGLNLSLELARAGILDKFNVMVIGVKLDAIERGEDRIIFKETMNSLGIEVPKSTA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + P V++P G ++ + + + + + + Q+LIE+ Sbjct: 149 IYTVEDAEKVALDLGYPVVVRPAYTMGGTGGGLVYNAEELRTVVSRGIAASLIGQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + S + + + + T + I ++ ++Q Sbjct: 209 SVAGWEELELEVVRDSKNHMITVCFIENVDAMGVHTGDSFCTAPM-LTISQELQDKLQDY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +AI G + F DP + +V +EIN + T S + G+ Sbjct: 268 SYRIVEAIKVIGGTNIQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA 319 >gi|83816045|ref|YP_445261.1| D-alanine--D-alanine ligase superfamily protein [Salinibacter ruber DSM 13855] gi|83757439|gb|ABC45552.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber DSM 13855] Length = 294 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 18/276 (6%) Query: 29 AGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGIL 85 G ++ + L L D A N+ G + V +LE+ +P S L Sbjct: 4 LGHTPVRVGTAADLRDRLGEGLSLDAAINITEGAHSRNREAYVPILLEMAGVPCLGSDAL 63 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSSLGII- 142 ++++DK +K +V++ +P P + + + P +KP G+S GI Sbjct: 64 TLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITP 123 Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 ++ ++ + + ++ D + G E T V+G + + + Sbjct: 124 DSKVEDVAALRRAVDRITTTYDQDAVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPT 183 Query: 201 ---------SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251 + + + L + + +Q L+ A + CR +R+DF D Sbjct: 184 TGLGLHALEHRGAPTADQDWEYELRGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVD 243 Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 ++LEIN P P F +A G + + Sbjct: 244 G-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVD 278 >gi|87308406|ref|ZP_01090547.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Blastopirellula marina DSM 3645] gi|87288963|gb|EAQ80856.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Blastopirellula marina DSM 3645] Length = 1088 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + ++A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPDMADRTYIEPLSWEIIEKIIAKERPDALLP 88 Query: 57 VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + +E+ ++ ++A A ++ ++ V + Sbjct: 89 TLGGQTALNLAMELEKHGVLEKYGVEMIGANAAVIAKAEEREQFKAAMEKIGLEVCRGGT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G + + + + +++LIE+ Sbjct: 149 VHTIQEARAVLDEIGLPAVVRPSFTMGGSGSAIAYNREEFDSLVRNGLDQSPVNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVIGWKEYEMEVMRDVADNVVIICTIENFDPVGVHTGDSITVAPAQTLSDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP S ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVIREIGVETGGSNIQFANDPHSDRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 84/283 (29%), Gaps = 31/283 (10%) Query: 25 ALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + + D+ V + ++PD G Sbjct: 593 ALRELGIESIMVNSNPETVSTDYDTSDILFFEPLTTEDVLNICDKVQPDGVIVQFGGQTP 652 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + +A +K + P Sbjct: 653 LNLARALATAGVPIIGTSVDTIEAAEDREKFQKLLNQLGLKQPANAIARTMTQARTESAK 712 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 + P +++P + + D+ + ++ G +LI+++ D E+ + Sbjct: 713 VGYPSLVRPSFVLGGRAMEICYDDKQFERYVAEAFLVAQGQPVLIDRFLEDATEVDVDCI 772 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P +P + E++ + + G Sbjct: 773 SDGENVVVAGIMEHIEEAG---VHSGDSACSIPPYSLPGPVVNEIREATVAMARKLKVIG 829 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGY 283 + F K V+ LE+N + T P +A G Sbjct: 830 LMNVQFAVKQEDGKMNVYVLEVNPRASRT----VPFVAKATGM 868 >gi|327482036|gb|AEA85346.1| carbamoyl phosphate synthase large subunit [Pseudomonas stutzeri DSM 4166] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ GF+V ++ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLEKHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKNIGLACPESGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEAYAVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPQNATARSEEEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ +++ + + ++ ++ +L++ + IE+ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYEL-KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + D V + + + + LP I +I ++V+++A Sbjct: 762 DVDAVCDGETVVIGGIMQHIEQAGVHSGDSACSLPAYSLPQHIQDEIREQVRKMALE--- 818 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ ++ LE+N + T P ++ G S ++ Sbjct: 819 -LDVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|146283641|ref|YP_001173794.1| carbamoyl phosphate synthase large subunit [Pseudomonas stutzeri A1501] gi|145571846|gb|ABP80952.1| carbamoylphosphate synthetase large subunit [Pseudomonas stutzeri A1501] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ GF+V ++ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + + G+ S Sbjct: 89 TMGGQTALNCALDLEKHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKNIGLACPESGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHNMEEAYAVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPQNATARSEEEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P V++P + ++ +++ + + ++ ++ +L++ + IE+ Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYEL-KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + D V + + + + LP I +I ++V+++A Sbjct: 762 DVDAVCDGETVVIGGIMQHIEQAGVHSGDSACSLPAYSLPQHIQDEIREQVRKMALE--- 818 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ ++ LE+N + T P ++ G S ++ Sbjct: 819 -LDVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866 >gi|209559197|ref|YP_002285669.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes NZ131] gi|226700940|sp|B5XKW2|CARB_STRPZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|209540398|gb|ACI60974.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes NZ131] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNDQVYVIEVNPRASRT----VPFLSKVPGIPMAQIATKLI 860 >gi|162139406|ref|YP_280093.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS6180] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|162139185|ref|YP_602227.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS10750] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSILIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|162139108|ref|YP_598311.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS10270] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|162139084|ref|YP_596431.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS9429] gi|162139133|ref|YP_600307.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS2096] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|139473990|ref|YP_001128706.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes str. Manfredo] gi|167006450|sp|A2RF60|CARB_STRPG RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|134272237|emb|CAM30489.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes str. Manfredo] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|187924843|ref|YP_001896485.1| carbamoyl phosphate synthase large subunit [Burkholderia phytofirmans PsJN] gi|187716037|gb|ACD17261.1| carbamoyl-phosphate synthase, large subunit [Burkholderia phytofirmans PsJN] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 92/320 (28%), Gaps = 47/320 (14%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IF 274 + + G S F +P ++ +E+N P ++ S Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSSALASKATGFPI 326 Query: 275 PEMAA--YAGYSFRELLLWM 292 ++AA GYS EL + Sbjct: 327 AKIAAKLAVGYSLDELKNEI 346 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|94543719|gb|ABF33767.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS10270] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 45 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339 Query: 292 M 292 + Sbjct: 340 I 340 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875 >gi|94547637|gb|ABF37683.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS10750] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 45 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339 Query: 292 M 292 + Sbjct: 340 I 340 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 774 SDGKSILIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875 >gi|94541838|gb|ABF31887.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS9429] gi|94545716|gb|ABF35763.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS2096] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 45 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339 Query: 292 M 292 + Sbjct: 340 I 340 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875 >gi|50903082|gb|AAT86797.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS10394] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 45 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339 Query: 292 M 292 + Sbjct: 340 I 340 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 654 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875 >gi|71802385|gb|AAX71738.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS6180] Length = 1073 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 45 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339 Query: 292 M 292 + Sbjct: 340 I 340 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875 >gi|21904290|gb|AAM79169.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes MGAS315] Length = 1048 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 20 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 79 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 80 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 139 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 140 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 199 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 200 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 258 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 259 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 314 Query: 292 M 292 + Sbjct: 315 I 315 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 569 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 628 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 629 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 688 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 689 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 748 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 749 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 805 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 806 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 850 >gi|19748065|gb|AAL97546.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes MGAS8232] Length = 1072 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 44 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPT 103 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 104 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 163 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 164 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 223 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 224 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 282 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 283 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 338 Query: 292 M 292 + Sbjct: 339 I 339 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 593 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 652 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 653 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 712 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 713 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 772 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 773 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 829 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 830 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 874 >gi|161761316|ref|YP_059980.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS10394] gi|60389500|sp|Q5XCR6|CARB_STRP6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|15674870|ref|NP_269044.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes M1 GAS] gi|71910456|ref|YP_282006.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS5005] gi|22095524|sp|Q9A0C6|CARB_STRP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|13622006|gb|AAK33765.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes M1 GAS] gi|71853238|gb|AAZ51261.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes MGAS5005] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|161485749|ref|NP_664366.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS315] gi|25452822|sp|Q8K7Y3|CARB_STRP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|161484702|ref|NP_607047.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes MGAS8232] gi|22095490|sp|P58941|CARB_STRP8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|28896204|ref|NP_802554.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes SSI-1] gi|28811455|dbj|BAC64387.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes SSI-1] Length = 1058 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 + + + + +S + P ++ I + + + C G Sbjct: 759 SEGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|56808222|ref|ZP_00365996.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Streptococcus pyogenes M49 591] Length = 1023 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALQAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPAIMEHIER---ASVHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 >gi|298252680|ref|ZP_06976474.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis 5-1] gi|297533044|gb|EFH71928.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis 5-1] Length = 1131 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L + G +V ++ +D S + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + ILE + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + ++ + ++ +++LIE+ Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|297243387|ref|ZP_06927320.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis AMD] gi|296888634|gb|EFH27373.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis AMD] Length = 1131 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L + G +V ++ +D S + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + ILE + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + ++ + ++ +++LIE+ Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|283783377|ref|YP_003374131.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis 409-05] gi|283441375|gb|ADB13841.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis 409-05] Length = 1131 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L + G +V ++ +D S + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + ILE + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + ++ + ++ +++LIE+ Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|291456361|ref|ZP_06595751.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve DSM 20213] gi|291381638|gb|EFE89156.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve DSM 20213] Length = 1127 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + +L+ + + + A D+ K+VV G S + Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSRI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSLEECDKIAEELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|168217337|ref|ZP_02642962.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens NCTC 8239] gi|182380614|gb|EDT78093.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens NCTC 8239] Length = 1067 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ KPD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKEKPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + ++ Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|115351222|ref|YP_773061.1| carbamoyl phosphate synthase large subunit [Burkholderia ambifaria AMMD] gi|170697947|ref|ZP_02889030.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria IOP40-10] gi|171318236|ref|ZP_02907399.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria MEX-5] gi|115281210|gb|ABI86727.1| carbamoyl-phosphate synthase large subunit [Burkholderia ambifaria AMMD] gi|170137113|gb|EDT05358.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria IOP40-10] gi|171096580|gb|EDT41474.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria MEX-5] Length = 1084 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +LE + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + V+ M P VI+P G + + + + Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|15837709|ref|NP_298397.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa 9a5c] gi|22095537|sp|Q9PEC1|CARB_XYLFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|9106062|gb|AAF83917.1|AE003946_8 carbamoyl-phosphate synthase large chain [Xylella fastidiosa 9a5c] Length = 1080 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL GF+V + D D R+V ++A KPD Sbjct: 29 SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ I P +I+P G + Q + + + ++L+E+ Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGITYNRQEFEEIIKRGLELSPVHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + GF+ + D D S L L + ++ G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQKLVQQLGLRQPPNCTARTAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + + +S +S + P + +++R QA+ G+ Sbjct: 767 IADREGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGL 826 Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873 >gi|18311554|ref|NP_563488.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens str. 13] gi|22095508|sp|Q8XHB3|CARB_CLOPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|18146238|dbj|BAB82278.1| carbamoyl-phosphate synthetase catalytic subunit [Clostridium perfringens str. 13] Length = 1067 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ KPD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKEKPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + ++ Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|328956345|ref|YP_004373678.1| carbamoyl-phosphate synthase large subunit [Coriobacterium glomerans PW2] gi|328456669|gb|AEB07863.1| carbamoyl-phosphate synthase large subunit [Coriobacterium glomerans PW2] Length = 1107 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V ++ + + V+A +P Sbjct: 29 SGAQACKVLKEEGYEVILVNSNPATIMTDPGLADRTYVEPVTAEFIERVIARERPCALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + V+ +L+ + + A D+ + Sbjct: 89 TLGGQTGLNTAVELAESGVLDRWGVEMIGCDLAAIERGEDRRLFNEAMAEIGLPLARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P V++P G + ++ + + Q + ++L+E+ Sbjct: 149 AYSVDDAIEIAARVGYPCVLRPSYTLGGAGGGIAHDEEELREIVSQGLELSCAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + I + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDAAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDIEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S + AA Sbjct: 269 LAVLEKVGVETGGSNVQFAVNPRDGRLIIIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 90/296 (30%), Gaps = 31/296 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+DAGF+ + D D V V+ +PD L G Sbjct: 600 ALQDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVMDVVDVERPDGVIVTLGGQTP 659 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P Sbjct: 660 LKLAGALAASGVPILGTQPEAIDLAEDRERFSALLDELGIRYPKAGMATSCAQAEQVADR 719 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P +++P G+++ + + + +++ + + ++++++G IE + Sbjct: 720 IGYPLLVRPSYVLGGRGMMIAYDGEHLGAYMREAARVSPDHPVYLDRFLEGAIESDVDAL 779 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++T + + +++ A+G RG Sbjct: 780 SDGEQVYIGGILEHIEEAGIHSG---DSATCLPAFSFSDALIARLRQTTRRLALALGVRG 836 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 + + V+ +E N + T P ++ G + ++ ++ Sbjct: 837 LVNIQYAI--QGETVYVIEANPRASRT----VPFISKATGVPLAKCAARIMAGSTI 886 >gi|15615099|ref|NP_243402.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans C-125] gi|22095534|sp|Q9K9V9|CARB_BACHD RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|10175156|dbj|BAB06255.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus halodurans C-125] Length = 1062 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACQALKEEGYEVILVNSNPATIMTDTTMADRVYIEPLTLEFVSRIIRMERPDGILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + Y + A D R+ + VP I Sbjct: 90 LGGQTGLNMAVELDQAGILKEYNVELLGTKLDSIQQAEDRDLFRALMKELNEPVPDSEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G ++ ++ + + ++ Q L+E+ Sbjct: 150 HTLEEAYTFVERVGYPIIVRPAYTLGGTGGGLVYNEEDLVEIVTSGLKYSPVTQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGKDHAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNVQFALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 35/294 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P+ G Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSTSDKLYFEPLTVEDVMHIVNLEQPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A DK V + P+ + Sbjct: 640 INLASELAARGVKIIGTALEDMDRAEDRDKFEQTLVELNIPQPLGDTATSIEEARQIAER 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + N +LI++Y+ G EL + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLNYMAHAVKVNPKHPVLIDRYLTGKELEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P +P + +++ + + G+ Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSIAVYPPQTVPESLKQKLIERTIELARGLRIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 F++ V+ LE+N P ++ V+ P G + +L Sbjct: 817 LNIQFVWHKDD--VYVLEVNPRSSRTVPFLSKVTGVPMANVATKVMLGKTLPQL 868 >gi|95929151|ref|ZP_01311895.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas acetoxidans DSM 684] gi|95134649|gb|EAT16304.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas acetoxidans DSM 684] Length = 1085 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+D G++V + D D + + ++ +PD Sbjct: 29 SGTQACKALKDEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPAVLAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + L+ + + + A + D+ KQ + S GV V S Sbjct: 89 TLGGQTALNTAVAVAKDGTLDKFGVELIGAKLPAIEKAEDRTLFKQAMDSIGVAVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYDEAMVVIEEVGFPAIIRPSFTLGGTGGGIAYNREEYEAMAVAGIDASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVIGWKEYELEVMRDLADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVETGGSNIQFGINPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 90/290 (31%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++A PD G Sbjct: 599 ALHDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVENPDGVIVQFGGQTP 658 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ ++ P Sbjct: 659 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQALLHKLDLKQPANGLARSFEEAETIAEQ 718 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P V++P + ++ + + + + + +LI++++D IE+ + Sbjct: 719 IGYPVVVRPSYVLGGRAMEIVYGIEQLRNYMKFAVQASPEHPILIDKFLDHAIEIDVDAL 778 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P + ++ +EV+R +G G Sbjct: 779 ADGTDVVIGGIMQHIEEAGIHSG---DSACSLPPYSLAEELVEEVRRQTRALALELGVIG 835 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F V+ +E+N + T P ++ G ++ + Sbjct: 836 LMNIQFAV--KDNVVYLIEVNPRASRTS----PFVSKATGRPLAKIAARL 879 >gi|257058535|ref|YP_003136423.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC 8802] gi|256588701|gb|ACU99587.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC 8802] Length = 1081 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N M ++ + S P +I+P G + + + Q+L+E Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDSSPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%) Query: 22 CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58 C +A L DAG++ ++ V ++ P Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGVIIQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113 G V L + ++ + I Sbjct: 642 GGQTPLKLAVPLQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGI 701 Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P V++P + ++ D+ + ++ + +LI++ Sbjct: 702 SRSYEESVAVASRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDK 761 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++ + V + + + +S ++ + + + ++ Sbjct: 762 FLEN-AIEVDVDALCDMTGKVVIGGIMEHIEQAGVHSGDSACSLPFTTLSPHVINTIRNW 820 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++ G+ + +V+ LE N + T P ++ G ++ Sbjct: 821 TTHLANSLQVIGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872 >gi|218245501|ref|YP_002370872.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC 8801] gi|218165979|gb|ACK64716.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC 8801] Length = 1081 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N M ++ + S P +I+P G + + + Q+L+E Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDSSPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%) Query: 22 CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58 C +A L DAG++ ++ V ++ P Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGVIIQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113 G V L + ++ + I Sbjct: 642 GGQTPLKLAVPLQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGI 701 Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P V++P + ++ D+ + ++ + +LI++ Sbjct: 702 SRSYEESVAVASRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDK 761 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++ + V + + + +S ++ + + + ++ Sbjct: 762 FLEN-AIEVDVDALCDMTGKVVIGGIMEHIEQAGVHSGDSACSLPFTTLSPHVINTIRNW 820 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++ G+ + +V+ LE N + T P ++ G ++ Sbjct: 821 TTHLANSLQVIGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872 >gi|167761104|ref|ZP_02433231.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704] gi|167661338|gb|EDS05468.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704] Length = 1075 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + ILE + + A D++ K+ + + G+ + S Sbjct: 89 NLGGQSGLNLCSELAKAGILEKYNVQVIGVQVNAIERGEDRIEFKKSMDALGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 149 AYTVEEALAIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + + ++ + I + K +Q Sbjct: 209 SILGWEELELEIVRDADNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 44.5 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 89/291 (30%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63 AL+ GF+ + D D S L KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYNKEKPLGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T ++ A D R +P + Sbjct: 641 LNLASELEKNGVKILGTSPSVIDLAEDRDLFREMMEKLEIPMPESGMATTVEEALAIARE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMEGYMKAAVGVTPDRPILIDRFLN---HALECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+ + + + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISEENVRTIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + + KV+ LE N + T P ++ L ++ Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862 >gi|108762853|ref|YP_634088.1| D-ala D-ala ligase domain-containing protein [Myxococcus xanthus DK 1622] gi|108466733|gb|ABF91918.1| D-ala D-ala ligase domain protein [Myxococcus xanthus DK 1622] Length = 376 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 112/305 (36%), Gaps = 26/305 (8%) Query: 12 REVSLSSGKACASALEDAG--FKVSQIDVDR-SVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 R VS + A AL + I+ DR L +PDL N+ + Sbjct: 45 RVVS-----SMADALNRGDTLAEPLAIEGDRLDFMDTLRRCQPDLVVNLCESLAADSRGE 99 Query: 69 QAILELLEI---PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 AI LL++ YT S L+ L++ K ++K+V+++ GV P +V R + Sbjct: 100 MAIPCLLDVLGLAYTGSSALSLGLALHKPKAKEVLTARGVSTPPFHVVERLEDALAVDLP 159 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--- 180 P ++KP + +S+G+ + + L+EQ++ G E+ Sbjct: 160 WPLIVKPAREDASMGVTSESVVHERAALVRACDAVLREFHQPALVEQFIPGREIYVPLLG 219 Query: 181 ---------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + S +E + T ++ ++ ++A Sbjct: 220 NRPRQALPLTEIVFGRTFEDRPNIVSYNAKWEAASAEYRDTTSGLCRLDANLESRCVQVA 279 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A A+ C+ R D P + ++IN + P + F + A AG + L Sbjct: 280 LEAFAALDCQDYGRVDLRVSPE-GVPYVIDINPNCDLHPSAGFAKAALAAGMDYPALASR 338 Query: 292 MVEDA 296 +VE A Sbjct: 339 LVEVA 343 >gi|315637951|ref|ZP_07893137.1| carbamoyl-phosphate synthase, large subunit [Campylobacter upsaliensis JV21] gi|315481986|gb|EFU72604.1| carbamoyl-phosphate synthase, large subunit [Campylobacter upsaliensis JV21] Length = 1091 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 82/304 (26%), Gaps = 33/304 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D S+ +L K D Sbjct: 29 SGTQAAKTLKELGYRVILINSNPATIMTDPEFADATYIEPITKESILSILKKEKVDAILP 88 Query: 57 VLHGNF--------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 + G E + ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVFESEEFKKDFSFVKFLGANPEAIKKGEDRQIFKECMKKIGMDLPKS 148 Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + + I P +I+ G V+ + S + ++LI Sbjct: 149 MYAYDYEEALKAVDEIGFPLMIRASYTLGGAGSGVVYNLDEFKDLATAALSLSPIHEILI 208 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ + G + + LD I + + + + Sbjct: 209 EESLLGWKEYEMEVIRDRLDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQAMRN 268 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F P + ++ +E+N P ++ S + GY ++ Sbjct: 269 ASFAILREIGVDTGGSNVQFAIHPQNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKV 324 Query: 289 LLWM 292 + Sbjct: 325 ATLL 328 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 83/262 (31%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L + L+ D Sbjct: 621 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 677 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + G+ + + I P +++P + V+ + + Sbjct: 678 RKKFALFCENLGINQPRNATATKVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVYDESEL 737 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ + + +LI++++D E+ + D + + Sbjct: 738 RLYMQEAVAVSERSPVLIDEFLDNATEIDVDAISDGKEVYVAGIMEHIEEAGIHSG---D 794 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I + + + +G +G+ F K+F +E+N + T Sbjct: 795 SACSLPPCNIDEKTQELICQKTTEIALNLGVKGLLNIQFALHE--NKLFMIEVNPRASRT 852 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 853 ----VPFVSKATGVPLAKVATR 870 >gi|284046365|ref|YP_003396705.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684] gi|283950586|gb|ADB53330.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684] Length = 439 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 53/206 (25%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52 + V+ GG S E +VS+ + + + L V + + + D Sbjct: 9 VGVVFGGPSVEHDVSIITAQQAMAVL-SERHTVVPLYIGKDGRWWTGEELRDVSAFTQAP 67 Query: 53 -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77 + N +HG GEDG + LEL + Sbjct: 68 PRGARAVELRLGAADGPFVEPSTSRLRGDRALAISVVLNAIHGTGGEDGALLGALELSGV 127 Query: 78 PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPY 128 P+ G+ A A+ MDK +K V+ G+ V P + R + + P Sbjct: 128 PHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVADEVPLPC 187 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL 154 V+KP GSS+G+ + L Sbjct: 188 VVKPATLGSSIGVARCADPAEVEEAL 213 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR--KVFWLEINVQPGMTPV 271 PA I ++ + V+ A AH+A+ G+ R DF DP ++ E N PG Sbjct: 333 PADIAPELRERVRAEAAKAHRALRVAGVVRYDFFVLPDPDGGAERICVNEPNTVPG---- 388 Query: 272 SIFPEMAAYAGYSFRELLLWMV 293 S + G +F +LL ++ Sbjct: 389 SFAFYLFEPEGLAFPDLLDELL 410 >gi|157962892|ref|YP_001502926.1| carbamoyl phosphate synthase large subunit [Shewanella pealeana ATCC 700345] gi|157847892|gb|ABV88391.1| carbamoyl-phosphate synthase, large subunit [Shewanella pealeana ATCC 700345] Length = 1073 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + S G+ + Sbjct: 89 TMGGQTALNCALELESRGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + Q + +LLI++ Sbjct: 149 AHNMDEARAVQAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTFEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ + S Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLGMMQPENDTVTTVEGAVISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + DI ++ +G G Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQDIQDRMREQVGKLAMELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|330685486|gb|EGG97139.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus epidermidis VCU121] Length = 1057 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q L + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMNDLDVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMSIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMQAI 860 >gi|242373490|ref|ZP_04819064.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis M23864:W1] gi|242348853|gb|EES40455.1| carbamoyl phosphate synthase large subunit [Staphylococcus epidermidis M23864:W1] Length = 1057 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q L + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDADLKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLARHGVQILGTSLEDLNRAEDRKEFEALLRQIYVPQPQGKTSTSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + + ++ + + G+ Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQEEIETLEDYTIKLAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRSI 860 >gi|239636317|ref|ZP_04677319.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri L37603] gi|239597672|gb|EEQ80167.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri L37603] Length = 1057 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q L + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMNDLDVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D + + ++ Q LIE+ Sbjct: 150 NTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMSIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMQAI 860 >gi|237740186|ref|ZP_04570667.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 2_1_31] gi|229422203|gb|EEO37250.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 2_1_31] Length = 1061 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 33 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 92 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +L+ + + + + + D+ R + VP + Sbjct: 93 LGGQVALNLAVSLHESGVLDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSAIV 152 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 153 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 212 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 213 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 271 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 272 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 327 Query: 292 M 292 + Sbjct: 328 I 328 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 583 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 643 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 703 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 763 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 820 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 863 >gi|237743991|ref|ZP_04574472.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 7_1] gi|229433022|gb|EEO43234.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 7_1] Length = 1058 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVALYESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q LIE+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 A++ G++ I+ + V +L KP G Sbjct: 577 AIKAIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + ++I + + +A D+ + P+ + + + Sbjct: 637 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVENALKN 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ Sbjct: 697 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + +S + + P + + + + + Sbjct: 757 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ + K++ LE+N + T P ++ G + + + Sbjct: 814 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|126658369|ref|ZP_01729518.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110] gi|126620301|gb|EAZ91021.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110] Length = 1081 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A ++ D+ K ++ GVPVCPS + Sbjct: 89 TMGGQTALNVAVSLAKSGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148 Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P G + + + Q+L+E Sbjct: 149 ASTLEEAQVIGKEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + +V +E+N P ++ S + G+ + Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 39.1 bits (89), Expect = 0.85, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ P G V L + ++ Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSSECPVQTKIWGTSPDSIDTAED 681 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + I + + I P V++P + ++ D+ + Sbjct: 682 RERFEKILHDLDIKQPPNGISRSYEESLRVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ + V + + +S + Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLEN-AIEVDVDALCDTTGKVVIGGIMEHIEQAGVHSGDS 800 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + V + + + ++ ++ G+ + +V+ LE N + T Sbjct: 801 ACSVPFTTLSNSVIETIRTWTAALANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857 Query: 271 VSIFPEMAAYAGYSFREL 288 P ++ G ++ Sbjct: 858 ---VPYVSKATGRPLAKI 872 >gi|238499611|ref|XP_002381040.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357] gi|220692793|gb|EED49139.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357] Length = 100 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP- 270 P + K ++A A +++GCR R D F D LE+N G+ P Sbjct: 6 HDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLELNPISGLLPG 65 Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 S P A G ++ LL +++ A + Sbjct: 66 HSPLPSSAEENGLPYKRLLAAIIQSALTRK 95 >gi|70726712|ref|YP_253626.1| carbamoyl phosphate synthase large subunit [Staphylococcus haemolyticus JCSC1435] gi|82592665|sp|Q4L5Q5|CARB_STAHJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|68447436|dbj|BAE05020.1| carbamoyl-phosphate synthase large chain [Staphylococcus haemolyticus JCSC1435] Length = 1057 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + +Q LE + + + + + D+ + +++ VPV S + Sbjct: 90 LGGQTGLNMAIQLHDSGVLEANNVKLLGTELKSIQQAEDRELFRSLMNDLNVPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTVEQAFAFKDEVGYPLIVRPAFTMGGTGGGICYNDEELKEVVSNGLHYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ +P G Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +++ Sbjct: 640 INLADKLAKHGVKILGTTLENLNRAEDRKEFEALLHTIDVPQPKGKTATSPKEALENARE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + Q+ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEDIDTLEDYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860 >gi|88857846|ref|ZP_01132488.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas tunicata D2] gi|88819463|gb|EAR29276.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas tunicata D2] Length = 1072 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +L + + A + D+ R + + G+ + Sbjct: 89 TMGGQTALNCALDLDRRGVLAKHGVELIGATADAIDKAEDRSRFDVAMKAIGLETPRAEI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D I P +I+P G V + + + +LLI++ Sbjct: 149 ARSMESARDIVTRIGFPCIIRPSFTMGGTGGGVAYNQEEFEEICERGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 86/280 (30%), Gaps = 32/280 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ M Sbjct: 647 LKLARALEANGVPVIGTSPDAIDRAEDRERFQQLVERLGLLQPHNATVTSTEEAMAKSAE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L++ ++D IE+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVQASNEAPVLLDHFLDDAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + +I ++ +G G Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAEIQDRMRDQVTRMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + + F V+ +E+N P ++ + P Sbjct: 824 LMNTQFAV--KDGDVYLIEVNPRAARTVPFVSKATSVPIA 861 >gi|256027395|ref|ZP_05441229.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp. D11] gi|289765359|ref|ZP_06524737.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. D11] gi|289716914|gb|EFD80926.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. D11] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q LIE+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 A++ G++ I+ + V +L KP G Sbjct: 577 AIKAIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + ++I + + +A D+ + P+ + + + Sbjct: 637 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKN 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ Sbjct: 697 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + +S + + P + + + + + Sbjct: 757 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ + K++ LE+N + T P ++ G + + + Sbjct: 814 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|241762246|ref|ZP_04760328.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753826|ref|YP_003226719.1| carbamoyl phosphate synthase large subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373293|gb|EER62912.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553189|gb|ACV76135.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1110 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + LE + A + D+++ +Q + G+ S Sbjct: 89 TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P +I+P G V + + S + ++LIE+ Sbjct: 149 AHSLEEALDGLDYVGLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEYEMEVVRDRHDNCIIICSIENIDPMGVHTGDSITVAPALTMTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59 ALE AG++ + D D S L L + +LH Sbjct: 619 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 678 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + + I T + A ++ + P + Sbjct: 679 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 738 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P +I+P + +I + + + + +LI+QY+ + T Sbjct: 739 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 796 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + +S ++ + P +P I +E++ +A+ Sbjct: 797 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 856 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ F KV+ +E+N + T P +A G ++ Sbjct: 857 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 902 >gi|291287333|ref|YP_003504149.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884493|gb|ADD68193.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio acetiphilus DSM 12809] Length = 1073 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V I+ + + +L +PD Sbjct: 29 SGTQAVKALKEEGYRVILINSNPATIMTDPEIADATYIEPLTVEMAEKILEKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + LE + + I A + D+ KQ ++ G+ + S + Sbjct: 89 TVGGQTALNLAKEINDAGLLEKYNVELIGAKIEAIDKAEDRELFKQAMTKIGLHLPASAV 148 Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +D I P +I+P G V + + + ++L+E+ Sbjct: 149 CNTYQDALDCIDEIGFPAIIRPSFTLGGTGGNVAYNMEEYKEYVEWGLEASPVTEILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + + Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENVDAMGVHTGDSITVAPAQTLTDKEYQELRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +E+N P ++ S + G+ ++ Sbjct: 269 IKVIREIGVDTGGSNVQFAVNPANGDQIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 33/295 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63 ALE+ GF+ + D D S L ++ PD G Sbjct: 586 ALEEMGFETIMVNCNPETVSTDYDTSDRLYFEPLTREHVLNIVQKENPDGVIVQFGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ ++ P Sbjct: 646 LKLAVPLERAGVPILGTSPDSIDCAEDRERFKALMEKLDIMQPANGIAKAADEAYKIADQ 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ +S+ ++ + + +LI++Y+ E+ + Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYDRESLENYMVYAVKASEDHPVLIDKYLLHATEVDVDSI 765 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D V + + E S +S +P + D + E+ + + Sbjct: 766 SDGETCVIGSIMQHIE----EAGVHSGDSACSIPTRTINDAVKAELMTKTKQIAKELNVV 821 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ + +++ LE+N + T P ++ G ++ ++ A Sbjct: 822 GLMNIQYAI--KDDQIYMLEVNPRASRT----IPFVSKSIGVPLAKMAAKVMAGA 870 >gi|121998554|ref|YP_001003341.1| carbamoyl-phosphate synthase large subunit [Halorhodospira halophila SL1] gi|121589959|gb|ABM62539.1| carbamoyl-phosphate synthase large subunit [Halorhodospira halophila SL1] Length = 1073 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPVEWQTVSRIIEREQPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111 + G + L G A+ + R + + + Sbjct: 89 TMGGQTALNCALDLVKHGVLERYGVEMIGASREAIDKAEEREAFRAAMARIGLETPRAEL 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +Q + P +I+P G + + + + ++ +++L+E+ Sbjct: 149 ARSMAEAQAAQARMGFPVIIRPSYTLGGSGGGIAYNREEFNEIVERGLDLSYTNEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDRHDNAIIVCSIENLDPMGVHTGDSTTIAPAQTLTDKEYQLMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFAINPDNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 93/288 (32%), Gaps = 31/288 (10%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L + G++ + D D V V+ +PD G Sbjct: 588 LREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVETEQPDGVVVQYGGQTPL 647 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + A ++ + P + + I Sbjct: 648 KLARELEAAGTPIIGTSPDSIDLAEDRERFQELIGRIDLMQPPNRTARTETEALQLAAEI 707 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG 183 P V++P + ++ ++ + + ++ +H +L+++++D +E+ + Sbjct: 708 GYPLVVRPSYVLGGRAMEIVYEESELRQYMNEAVRVSHNSPVLLDRFLDDAVEVDVDAVS 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S ++ + P + D+ ++ L + +G G+ Sbjct: 768 DGDQVVIGGIMQHIEQAG---VHSGDSACSIPPYTLGQDVQDRIREQVRLLARELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F +++F LE+N + T P ++ G ++ Sbjct: 825 MNVQFAI--QGQRIFLLEVNPRASRT----VPYVSKACGVPLAKVAAR 866 >gi|168703983|ref|ZP_02736260.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Gemmata obscuriglobus UQM 2246] Length = 1114 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+ V ++ + V ++A +PD Sbjct: 29 SGTQACKALREEGYTVVLVNSNPATIMTDPETADRTYIEPITWEVVEKIIAAERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + L + + + D+ R K V GV V S++ Sbjct: 89 TLGGQTALNTAMDLFKRGVLAKYGVEMIGADADVIDKAEDRQRFKDAVLKIGVAVPKSVV 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ M + I P V++P G + + + + ++L+E+ Sbjct: 149 VHTLEEAMRALDEIGLPCVLRPSFTMGGSGGGIAYNRDEYRDIITHGLALSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + + Sbjct: 209 SVIGWKEYELEVMRDKADNVVIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQRMRDKA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 KDIIREIGVETGGSNIQFAINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 98/296 (33%), Gaps = 40/296 (13%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL G++V + D D S L L P+ N +H +G++ Sbjct: 612 ALRARGYEVIMVNSNPETVSTDYDTSDHLFFEPLTPEDVIN-IHERMKPEGVIVQFGGQT 670 Query: 72 -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122 L+ + +P + + + ++ ++ R ++V+ G+ + Sbjct: 671 PLNLATPLQSMGVPIIGTSVDSIDIAENRERFARLVTDLGLLQPANGTAVDEAQALRVAR 730 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCG 180 I P +++P + ++ + + + + D+ ++ + + E+ Sbjct: 731 KIGFPILVRPSFVLGGRDMKIVYNEDELTAYIRRVEPDLSRDRPVLIDQFLENATEVDVD 790 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + V + + ++ + P +P + E++ A+ Sbjct: 791 CLSDGTRTVIGGVMQHIEEAGIHSG---DSACVIPPYSLPATVINEIKVQTRKLAAALNV 847 Query: 241 RGISRSDFLFDPLSR--------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ F + KV+ LE N + T P ++ G L Sbjct: 848 KGLMNIQFAVAGIRGGVTATEAAKVYILEANPRASRT----IPFVSKATGVPLARL 899 >gi|323705536|ref|ZP_08117110.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535013|gb|EGB24790.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1073 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G KV ++ + + + ++ +PD Sbjct: 29 SGTQACKSLKEEGLKVILVNNNPATIMTDTEIADVVYIENPEVDVLEAIIDKERPDGILG 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + I++ + + I + + D+ + K + + Sbjct: 89 TIGGQTGLNVVVKLKESGIIDKYNLKVLGTSIESIKTAEDRELFKKKMEEIGEPIAESAT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +++P G + + + + + + ++LIE+ Sbjct: 149 VNNVDDAIKFAEKCGYPLIVRPAFTLGGTGGGIANNEDELKVIVDLGLKKSMAHEVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D +F + + Y+ ++ Sbjct: 209 SLYGYKEIEYEVMRDSNDNCITICNMENFDPVGVHTGDSIVVAPSQTLTDYE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SLKIIKALKIEGGCNVQFALDPNSHQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 89/290 (30%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ G K I D D V ++ KP + G Sbjct: 581 ALKSKGIKSIIINNNPETVSTDFDTGDRLYFEPLTLEDVLNIIEKEKPLGVLVMFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +K + P L D Sbjct: 641 INLAQGLSDNGVNILGTSFESIDDSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALT 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + + Q I + + + G +LI++Y++G E+ + Sbjct: 701 IGFPLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAMKVSPGKPVLIDKYIEGREVEVDAIS 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + + P + S +S + PA+ + A+ +G Sbjct: 761 DGTDVLI----PGIMEHIERAGVHSGDSFSMYPARNLSDHEISTIVEYTKKISCALKVKG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ V+ LE+N + T P ++ G ++ + + Sbjct: 817 LINIQFVV--KDGVVYVLEVNPRASRT----VPVISKATGVPMIDIAVKI 860 >gi|239627633|ref|ZP_04670664.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517779|gb|EEQ57645.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1072 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KPD A G Sbjct: 586 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A ++ + P ++ + H Sbjct: 646 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDEILEQCNIPRPAGHTVFTAEEAKKAAHE 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 706 LGYPVLVRPSYVLGGQGMQIAISDEDIDEFIGIINMIAQEHPILVDKYIMGKEIEVDAIC 765 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + S + + +D + +A+ +G+ Sbjct: 766 DGTDILIPGIMQHIERTGIHSGDSISVYPAMDITQHNIDT---IVDYTEKLARALHVKGM 822 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G L ++ Sbjct: 823 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 866 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 97/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGVEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + ++ + + + L + D+ K+ + V + Sbjct: 90 LGGQAGLNLAMELEDAGFFKEHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + + L + Q+L+E+ Sbjct: 150 EDVKHGLEIAAQIGYPVVLRPAYTLGGSGGGIAANPEQCAEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYTLDEIKNAVTKK 341 >gi|229061492|ref|ZP_04198836.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH603] gi|228717726|gb|EEL69376.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH603] Length = 1018 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGLPMANIATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|154174995|ref|YP_001407544.1| carbamoyl phosphate synthase large subunit [Campylobacter curvus 525.92] gi|112803772|gb|EAU01116.1| carbamoyl-phosphate synthase, large subunit [Campylobacter curvus 525.92] Length = 1087 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L++ G++V I D D +S+ ++ D Sbjct: 29 SGTQAAKTLKELGYRVVLINSNPATIMTDPDFADATYIEPITTQSIERIIKKECVDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112 + G + +Q + L G A+ + R + + + Sbjct: 89 TMGGQVALNVAMQLYEQNLLGDVKFLGANPEAIKKGEDRQIFKATMQRIGMDLPESRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + + I P +I+ G V + ++LIE+ + Sbjct: 149 NFDEAIFAANEIGFPLIIRASYTLGGAGSGVAYNMDEFRELAAAGLDASPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P S ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPNSGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 87/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ H +PD ++H L + + ++ D Sbjct: 617 FEPIDF-EHVRSVIEHERPDGV--IVHFGGQTPLKFAKRLVVAGAKIIGTSARTIDIAED 673 Query: 93 KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + +S+ G+ + + I P +++P + + + + Sbjct: 674 RKKFSEFISNLGIKQPTNDTATSEDEALKKAAAIGYPVLVRPSYVLGGRAMRRVHSEAEL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ ++ +L++++ D EL + D + + Sbjct: 734 KVYMNEAVKVSNNSPVLLDKFLQDATELDVDAISDGKDVYIGAIMEHIEEAGIHSG---D 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ +V+ +G G+ F +++ +E+N + T Sbjct: 791 SACILPPISLSPEMIAKVEAQTRDIALNLGVVGLMNIQFAI--YENELYMIEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 849 ----VPFVSKATGVPMAKVATR 866 >gi|116747460|ref|YP_844147.1| carbamoyl phosphate synthase large subunit [Syntrophobacter fumaroxidans MPOB] gi|116696524|gb|ABK15712.1| carbamoyl-phosphate synthase large subunit [Syntrophobacter fumaroxidans MPOB] Length = 1080 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ I+ + +V V+ +PD Sbjct: 29 SGTQACKALREEGYEIVLINSNPATIMTDPETADRTYIEPITPEAVAKVIERERPDALLP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V+ +LE + + + + D+ + + G+ V S Sbjct: 89 TLGGQTALNVAVRVAETGVLERFGVALIGASVEVIKKAEDRELFRDAMKRIGLRVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G V + + + +++E+ Sbjct: 149 ARSMSEVESIAREIGFPIIVRPSFTLGGTGGGVAYNREELKELAQSGLDASFIHTVMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + +D I + + + + + Sbjct: 209 SVLGWKEFELEVMRDCMDNVVIICSIENMDAMGVHTGDSITVAPAQTLTDREYQLLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAILREIGVETGGSNVQFAINPADGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 85/253 (33%), Gaps = 10/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V +L KP G + V I T + A + + Sbjct: 625 EDVLHILDTEKPKGVIVQFGGQTPLNLSVPLEKAGARILGTSPDAIDRAEDRKRFQKLLQ 684 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + R ++ I P V++P + ++ + + + Sbjct: 685 KLGLKQPRNATAFTLREAAEAAGRIGYPVVVRPSYVLGGRAMEIVFDAAMLESFMKTAVH 744 Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + G +LI+Q+ D +E+ + D ++ V + + ++ + P Sbjct: 745 VSPGHPILIDQFLEDAVEIDVDAISDGTVTVVGGIMEHIEQAGIHSG---DSACVLPPMS 801 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I I +E++R L + +G G+ F + ++F LE+N + T P ++ Sbjct: 802 ISRSIQEEIRRQTRLLAKELGVVGLMNIQFAL--QNGEIFILEVNPRASRT----IPFVS 855 Query: 279 AYAGYSFRELLLW 291 G+ +L Sbjct: 856 KAIGFPLAKLATR 868 >gi|319787363|ref|YP_004146838.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas suwonensis 11-1] gi|317465875|gb|ADV27607.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1080 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D ++V ++A KPD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPDTADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + ++L+E+ Sbjct: 149 ARSFEQAVEIQAKVGYPTIIRPSFTLGGSGGGIAYNREEFEEIVKRGLELSPVHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F + + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVEKLGLKQPPNRTARTADEALALARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDL 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + + +S +S + P + E++R + + G+ Sbjct: 767 IADAEGNTLIGGVMEHIEEAGVHSGDSSCSLPPYSLSQATQAELRRQVVELAKGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQTNEEGEDTVYLLEVNPRASRT----VPFVSKATGVQLAKIAAR 873 >gi|242309114|ref|ZP_04808269.1| carbamoyl phosphate synthase large subunit [Helicobacter pullorum MIT 98-5489] gi|239524155|gb|EEQ64021.1| carbamoyl phosphate synthase large subunit [Helicobacter pullorum MIT 98-5489] Length = 1088 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 87/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSV-GLVLAHLKPDLAFN 56 SG A L++ G+KV I+ + + ++ K D Sbjct: 33 SGTQAAKTLKELGYKVVLINSNPATIMTDPEFADRTYIEPITEEIVADIIKKEKVDAILP 92 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112 + G + + + + G A+ + R + + + Sbjct: 93 TMGGQTALNIAMSMYEKGMLKGVQFLGAKPEAIKKGEDRQAFKEAMLKIGMDLPKSCYAY 152 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +++ I P +I+ + G V + +++LIE+ + Sbjct: 153 TLQEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKALAQNGLEVSPINEILIEESL 212 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 213 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 272 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 273 ILREIGVDTGGSNVQFAINPQNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 328 Score = 42.9 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 93/265 (35%), Gaps = 17/265 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + RS V+ KPD ++H + L + + Sbjct: 615 DTLYFEPITFECVRS---VIEREKPDGI--IVHFGGQTPLKLAKKLTTIGANIIGTSAKT 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 ++ D+ + + V G+ + + I P +++P + ++ Sbjct: 670 IDIAEDREKFAKFVEENGLLQPKNGTAYTKEEAIGIAQNIGFPVLVRPSYVLGGRAMRIV 729 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + ++ S + +LI+++++ + D D ++ + + E Sbjct: 730 YNVAELQNYMSEAVSVSEDSPVLIDKFLNN---ALELDVDIICDGRDVYIAGIMQHIEEA 786 Query: 205 KYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 S +S +P I + KE++ + +G G+ + + + ++ +E+N Sbjct: 787 GIHSGDSACSIPTISISKEKIKEIEETTAKIARNLGVIGLMNTQYAIFEDT--LYLIEVN 844 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288 + T P ++ G ++ Sbjct: 845 PRASRT----VPFVSKATGIPLAKV 865 >gi|85860899|ref|YP_463101.1| carbamoyl phosphate synthase large subunit [Syntrophus aciditrophicus SB] gi|85723990|gb|ABC78933.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus SB] Length = 1069 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+ V I+ + +V ++A +PD + Sbjct: 29 SGTQACKALREEGYSVVLINSNPATIMTDPETADRTYIEPITPEAVEKIIARERPDALLS 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + V LE + + + + D+ R VP Sbjct: 89 TLGGQTGLNTAVAVAESGLLERYGVEMIGASLPVIHKAEDRELFRRAMESIGLRVPRSGF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +++P G V + + + ++++E+ Sbjct: 149 ARTMEEVLTIAEEIGFPVIVRPSFTLGGTGSGVAYNREELVEQARAGLEASMIHEIMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G + + D I + + + + Sbjct: 209 SALGWKEYELEVMRDRADNVVIICSIENLDPMGVHTGESITVAPAQTLTDAEYQHMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 IAIMREIGVETGGSNVQFAVHPETGEMIVIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.9 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP+ G Sbjct: 583 ALREEGYESLMVNSNPETVSTDYDTSDKLFFEPVTLEDVLHIIECEKPEGVIVQFGGQTP 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +I T + A + + S PV ++ +++ Sbjct: 643 LNLAKGLEAAGAKILGTSPDSIDRAEDRKRFQEIVDKLSLNQPVNATVTDVAGALEAAEH 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ S+ + ++ + +LI+Q+++ V Sbjct: 703 IGYPVLVRPSYVLGGRSMEIVYDADSLSQFMERALKVSPDHPILIDQFLED---AIEVDV 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D TE V + E S +S VLP + + + Q + G Sbjct: 760 DAISDGTETVVAGIMEHIEEAGIHSGDSACVLPTMSFSEDFLGLIESQTERIAQELRVIG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + ++ LE+N + T P ++ G +L Sbjct: 820 LMNIQYAV--KEGILYVLEVNPRASRT----VPFVSKAIGVPLAKLATK 862 >gi|256846778|ref|ZP_05552233.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_36A2] gi|256717744|gb|EEU31302.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_36A2] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + + +G+ Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + K++ LE+N + T P ++ G + + + Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|237740837|ref|ZP_04571318.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 4_1_13] gi|229431134|gb|EEO41346.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 4_1_13] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + + +G+ Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + K++ LE+N + T P ++ G + + + Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|254478598|ref|ZP_05091971.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium pacificum DSM 12653] gi|214035452|gb|EEB76153.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium pacificum DSM 12653] Length = 1072 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V + D D V ++A +PD Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKIIAKERPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMAQEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPAQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A+ G F DP S K + +E+N P ++ S + GY Sbjct: 268 SIKIIRALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYP 317 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 32/286 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG K I D D + + KP + G Sbjct: 580 ALKEAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDILNIYEKEKPLGVMVMFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I T + + +K + P L D Sbjct: 640 INLTEELVKNEVKILGTSFKSIDISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + + Q + + ++ + G +LI++Y+DG E+ + Sbjct: 700 LGFPLLVRPSYVIGGQSMEKVNTLQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + PA+ + + +A+ +G Sbjct: 760 DGECVLI----PGIMEHIERTGVHSGDSFSIYPARNLTEREINTIIEYTEKISKALNVKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F V+ LE+N + T P M+ G +L Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855 >gi|167587478|ref|ZP_02379866.1| carbamoyl phosphate synthase large subunit [Burkholderia ubonensis Bu] Length = 854 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +LE + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGV 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + V+ M + P VI+P G + + + + Sbjct: 149 AHSMEEATQVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICRRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 83/274 (30%), Gaps = 34/274 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKATVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINV 264 + G+ F ++ LE+N Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNP 854 >gi|21241014|ref|NP_640596.1| D-alanine-D-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] gi|21106303|gb|AAM35132.1| D-alanine-D-alanine ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 75 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 + ++ GG S+E EVSL S + AL+ F+ I +D Sbjct: 6 VGLIFGGKSAEHEVSLQSARDILDALDPRRFEPVLIGID 44 >gi|258623841|ref|ZP_05718795.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603] gi|258583830|gb|EEW08625.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603] Length = 1076 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGVQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +M+ + + P +I+P G + + + + ++LLI++ Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ ++ Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + + +I +++ +G RG Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +V+ +E+N + T P ++ G ++ Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866 >gi|255281292|ref|ZP_05345847.1| carbamoyl-phosphate synthase, large subunit [Bryantella formatexigens DSM 14469] gi|255268249|gb|EET61454.1| carbamoyl-phosphate synthase, large subunit [Bryantella formatexigens DSM 14469] Length = 1075 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + DV + ++ +PD Sbjct: 29 SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIQKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K+ +++ G+ + S Sbjct: 89 NLGGQSGLNLCAELYKAGILDKYGVKVIGVQVDAIERGEDRIEFKKAMNALGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVEEALAIADNLGYPVVLRPAYTMGGAGGGLVYNREELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + + + + + I + K +Q Sbjct: 209 SIIGWEELELEVVRDADNNMITVCFIENIDPMGVHTGDSFCSAPM-LTISEECQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 43.3 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D+ R +P + + Sbjct: 641 LNLAADLEKNGVKILGTSPSVIDLAEDRDQFREMMEKLEIPMPESGMAVNVEEALSIAKQ 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMTEYMKAAVGVTPDRPILIDRFLN---HATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P I + + ++ + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISAENVETIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + KV+ LE N + T P ++ + ++ R Sbjct: 818 LMNMQYAI--EKGKVYVLEANPRASRT----VPLVSKVCNIRMVPIATDIITSELTGR 869 >gi|298490013|ref|YP_003720190.1| carbamoyl-phosphate synthase large subunit ['Nostoc azollae' 0708] gi|298231931|gb|ADI63067.1| carbamoyl-phosphate synthase, large subunit ['Nostoc azollae' 0708] Length = 1094 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAKVIEKERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + ++ + + GVPVCPS Sbjct: 89 TMGGQTALNLAVALSKNGVLDKYNVELIGAKLPAIEKAENRKLFNEAMGKIGVPVCPSGT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + L + Q+LI+ Sbjct: 149 ASSLEESKEIAHHIGTYPLIIRPAFTMGGTGGGIAYNQEEFELMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I +F + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ + Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAGIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 >gi|213421395|ref|ZP_03354461.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 39 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVS 34 + ++ GG S+E EVSL S K A++ F V Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVV 39 >gi|71897682|ref|ZP_00679927.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Ann-1] gi|71732585|gb|EAO34638.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Ann-1] Length = 1080 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL GF+V + D D R+V ++ KPD Sbjct: 29 SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ I P +I+P G + Q + + + ++L+E+ Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + GF+ + D D S L L + ++ G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + + +S +S + P + + +++R QA+ G+ Sbjct: 767 IADPEGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSVATQDDLRRQVIRLAQALNVIGL 826 Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873 >gi|28198316|ref|NP_778630.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa Temecula1] gi|71276056|ref|ZP_00652337.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Dixon] gi|71899478|ref|ZP_00681636.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Ann-1] gi|170729660|ref|YP_001775093.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M12] gi|182680955|ref|YP_001829115.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M23] gi|32129438|sp|Q87EB8|CARB_XYLFT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|28056386|gb|AAO28279.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa Temecula1] gi|71163139|gb|EAO12860.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Dixon] gi|71730791|gb|EAO32864.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Xylella fastidiosa Ann-1] gi|167964453|gb|ACA11463.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa M12] gi|182631065|gb|ACB91841.1| carbamoyl-phosphate synthase, large subunit [Xylella fastidiosa M23] gi|307579423|gb|ADN63392.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa subsp. fastidiosa GB514] Length = 1080 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL GF+V + D D R+V ++ KPD Sbjct: 29 SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ I P +I+P G + Q + + + ++L+E+ Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + GF+ + D D S L L + ++ G Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + + +S +S + P + +++R QA+ G+ Sbjct: 767 IADPEGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGL 826 Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873 >gi|170732613|ref|YP_001764560.1| carbamoyl phosphate synthase large subunit [Burkholderia cenocepacia MC0-3] gi|169815855|gb|ACA90438.1| carbamoyl-phosphate synthase, large subunit [Burkholderia cenocepacia MC0-3] Length = 1084 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|162218056|ref|YP_620694.2| carbamoyl phosphate synthase large subunit [Burkholderia cenocepacia AU 1054] gi|162227934|ref|YP_834937.2| carbamoyl phosphate synthase large subunit [Burkholderia cenocepacia HI2424] Length = 1084 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|327537941|gb|EGF24638.1| carbamoyl-phosphate synthase, large subunit [Rhodopirellula baltica WH47] Length = 1083 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ ++ ++A A ++ + V + Sbjct: 89 TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G + + + ++LIE+ Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVIREIGVETGGSNIQFAIEPDTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 AL++ G + + D D S L L + N+ + +VQ + Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQPDGVIVQFGGQTP 651 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGV------------PVCPSILVNRFTMDSQHL 123 + + + + P Sbjct: 652 LNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAKR 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + + + ++ G +LI+++ D E+ + Sbjct: 712 IGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDAI 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + + E++ + G Sbjct: 772 SDGNNCVIMGIMEHIEEAG---VHSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVVG 828 Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + + LE+N + T P +A G L Sbjct: 829 LMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANLATK 875 >gi|319944202|ref|ZP_08018478.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis ATCC 51599] gi|319742497|gb|EFV94908.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis ATCC 51599] Length = 1088 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL G++V + D D + + ++ +P Sbjct: 29 SGAQACKALRQEGYRVVLVNSNPATIMTDPDMADVTYIEPITWQVLERIIEKERPSAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ + + A + D+ + KQ + S G+ S Sbjct: 89 TMGGQTALNCALDLHRHGVLDKYGVELIGARPEAIEKAEDRQKFKQAMESIGLGSARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++Q I P +I+P G + + + ++LLIE+ Sbjct: 149 AHSMDEAWEAQRDIGFPVIIRPSFTLGGTGGGIAYNAEEFETICKTGLELSPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDREDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAIHPETGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 95/298 (31%), Gaps = 38/298 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++ KP G Sbjct: 582 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVELEKPVGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + + Sbjct: 642 LKLARALEAAGVPIIGTSPDSIDVAEDRERFQKLLTRLGLLQPPNRTARTEGEAIQLANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L++++ D IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHDQRDLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + + +E++R L +A+ RG Sbjct: 762 CDGERVVIGGVMEHIEQAG---VHSGDSACSLPPYSLSPVLVEEIKRQTVLMAKALKVRG 818 Query: 243 ISRSDFLFDPL---------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + +V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAIQREPAEQEGQPPTERVYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 872 >gi|28572557|ref|NP_789337.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei TW08/27] gi|28410689|emb|CAD67075.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei TW08/27] Length = 1103 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L++ G +V + D + S + +L +PD Sbjct: 29 SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110 L G + +Q LE + A ++ + +V S V Sbjct: 89 TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + P VI+P LG ++ + + + Q + Q+L+E+ Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + T I + + + + Y+ ++ + Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHTGDSVTVAPAMTLTDRE-YQNLRNI 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + IG G F +P +V +E+N P ++ S + G+ +L Sbjct: 268 AIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVN--PRVSRSS--ALASKATGFPIAKLA 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 >gi|28493332|ref|NP_787493.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str. Twist] gi|28476373|gb|AAO44462.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str. Twist] Length = 1103 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L++ G +V + D + S + +L +PD Sbjct: 29 SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110 L G + +Q LE + A ++ + +V S V Sbjct: 89 TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + P VI+P LG ++ + + + Q + Q+L+E+ Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + T I + + + + Y+ ++ + Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHTGDSVTVAPAMTLTDRE-YQNLRNI 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + IG G F +P +V +E+N P ++ S + G+ +L Sbjct: 268 AIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVN--PRVSRSS--ALASKATGFPIAKLA 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 >gi|32477331|ref|NP_870325.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Rhodopirellula baltica SH 1] gi|81835273|sp|Q7UJ58|CARB_RHOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|32447882|emb|CAD77400.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Rhodopirellula baltica SH 1] Length = 1083 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ ++ ++A A ++ + V + Sbjct: 89 TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G + + + ++LIE+ Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVIREIGVETGGSNIQFAIEPDTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 AL++ G + + D D S L L + N+ + +VQ + Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQPDGVIVQFGGQTP 651 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGV------------PVCPSILVNRFTMDSQHL 123 + + + + P Sbjct: 652 LNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAKR 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + + + ++ G +LI+++ D E+ + Sbjct: 712 IGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDAI 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P + + E++ + G Sbjct: 772 SDGNDCVIMGIMEHIEEAG---VHSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVVG 828 Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + + LE+N + T P +A G L Sbjct: 829 LMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANLATK 875 >gi|294056034|ref|YP_003549692.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita akajimensis DSM 45221] gi|293615367|gb|ADE55522.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita akajimensis DSM 45221] Length = 1078 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 91/304 (29%), Gaps = 33/304 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + DV ++ ++A KPD Sbjct: 29 SGTQACKALREEGYRVVLVNSNPATIMTDPEFADVTYIEPLTVDALEKIIAQEKPDALLP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 L G G + + + Y I A +++K ++ V + + + + Sbjct: 89 TLGGQTGLNLSMDLNEAGILAKYGVEMIGAKPEAIEKGEARDVFKQAMLKIGLDVARSAT 148 Query: 117 TMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168 + P +I+P G + + + + ++L+ Sbjct: 149 VNTLADALKAADEIIGDFPIIIRPSFTLGGSGGGIAYNREEYEKIVQAGLDASPTTEVLV 208 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228 E+ + G + + D + +F + + + Sbjct: 209 EECLLGWKEYEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITIAPAMTLTDKEYQLMRD 268 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 ASFACIREVGVETGGSNIQFSVNPANGRMVVIEMN--PRVSRSS--ALASKATGFPIAKI 324 Query: 289 LLWM 292 + Sbjct: 325 AAKL 328 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/289 (10%), Positives = 84/289 (29%), Gaps = 29/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63 AL + G++ + D D S L D G Sbjct: 589 ALREVGYETIMVNSNPETVSTDYDTSDKLFFEPLTLEDVLEIYYQSDCDGVIVQFGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T ++ +A + R P + Sbjct: 649 LNLASELEAHGVNIIGTSPSMIDAAEDRNLFRDILDRVGLKQPKNRIANSQEQAYELAGE 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ + + + G +L++Q+++ Sbjct: 709 IGFPILLRPSFVLGGRGMFIVYDMDEMKKIIREVFDVAPGKPVLLDQFLEDAYELDVDCI 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S + + P + ++ + V++ ++ + + G+ Sbjct: 769 SDGETTVIGGM--LQHVEFAGVHSGDAAMVMPPHTLSDEMLETVRQASYALAKELEVVGL 826 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +++ +E+N + T P ++ G + + Sbjct: 827 MNVQYAI--KDNELYIIEVNPRASRT----VPFVSKAIGVPLAKYAARL 869 >gi|34762313|ref|ZP_00143317.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888035|gb|EAA25098.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVVLVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + + +G+ Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + K++ LE+N + T P ++ G + + + Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|262067670|ref|ZP_06027282.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium periodonticum ATCC 33693] gi|291378619|gb|EFE86137.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium periodonticum ATCC 33693] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +L+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGVLDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLASGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|119775635|ref|YP_928375.1| carbamoyl phosphate synthase large subunit [Shewanella amazonensis SB2B] gi|119768135|gb|ABM00706.1| carbamoyl-phosphate synthase large subunit [Shewanella amazonensis SB2B] Length = 1076 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + + G+ + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRARFDKAMKKIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + Q + ++LLI++ Sbjct: 149 AHSMEEAYAVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLREIGVETGGSNVQFGISPTTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVHYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIKRLNMKQPENDTVTTVEGAVIAAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D E+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDDATEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P + I +++ +G G Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSACSLPPYTLSKAIQDQMREQVSKLAFELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|325282763|ref|YP_004255304.1| carbamoyl-phosphate synthase, large subunit [Deinococcus proteolyticus MRP] gi|324314572|gb|ADY25687.1| carbamoyl-phosphate synthase, large subunit [Deinococcus proteolyticus MRP] Length = 1023 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 88/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G++V + D D V V+ +PD Sbjct: 29 SGTQALKALKSEGYRVILVNSNPATIMTDPDLADATYLEPLTPEFVRRVIEKERPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + LE + + A D+ + + GV Sbjct: 89 TLGGQTALNLAMELHENGTLEEFGVELIGANAEAIHKGEDREAFQAAMQKIGVETARGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ Q + P VI+P G + + + +L+E+ Sbjct: 149 VHSMEEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLKITEGGLRDSPVTSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + ++ + + Sbjct: 209 SILGWKEYELEVMRDTADTVVIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQELRDQS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S + +P +V +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQYAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 86/291 (29%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG++ + D D V ++ H KP L G Sbjct: 580 ALQEAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIIEHEKPVGVIVQLGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A P+ Sbjct: 640 LKLAQRLADAGAPIIGTSPETIHQAEDRASFNELCERLGIPQPLGKVAATPTQAERLAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGV 181 + P + +P + ++ + L + + G ++ +Q+++G EL Sbjct: 700 LGFPLMARPSYVLGGRAMRTVRSMPELKTYLKEVYAAVEGQPSILLDQFLEGALELDVDC 759 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S ++ + P + ++ + V++ +G R Sbjct: 760 LCDGQSAVVAGIMEHIEAAG---VHSGDSACIIPPVSLSAELLETVKKTTERLALELGVR 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ + + LE N + T P ++ G+ + + Sbjct: 817 GLMNVQYAV--KDGVPYILEANPRASRT----VPYVSKATGHPLAKYAARI 861 >gi|294782719|ref|ZP_06748045.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 1_1_41FAA] gi|294481360|gb|EFG29135.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 1_1_41FAA] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +L+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGVLDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFIKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + +G+ Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G + + + Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|171316211|ref|ZP_02905434.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] gi|171098625|gb|EDT43422.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5] Length = 50 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%) Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++LE+N PGMT S+ P+ A G + EL++ ++ Sbjct: 3 DATGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 44 >gi|257064024|ref|YP_003143696.1| carbamoyl-phosphate synthase large subunit [Slackia heliotrinireducens DSM 20476] gi|256791677|gb|ACV22347.1| carbamoyl-phosphate synthase large subunit [Slackia heliotrinireducens DSM 20476] Length = 1093 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 101/313 (32%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V ++ + V ++A +PD Sbjct: 29 SGTQACKVLQEEGYEVVLVNSNPATIMTDPQLADRTYVEPITPEFVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G G + V+ +L+ + + A D+ + + G+ Sbjct: 89 TIGGQTGLNTAVELAKSGVLDKYGVEMIGCDLDAIERGEDRKLFAEAMEEIGLECARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P V++P G + ++ + + Q + +++L+E+ Sbjct: 149 AYSVEDAVELSKSIGFPLVLRPSFTLGGAGGGIAYDEKQLREIVAQGLELSPANEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + I +F + + + ++ + Sbjct: 209 SIIGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRVAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKVGVETGGSNVQFALNPDNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIINDI 339 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 31/281 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL DAGF+ + D D V ++ +PD L G Sbjct: 597 ALHDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVMDIVDVERPDGVVVTLGGQTP 656 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + Sbjct: 657 LKLARALADSGVPIMGTQPEAIDLAEDRERFSAILDELKIIYPAAGMATSYEEALKVASR 716 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P +++P G+ + Q++ + ++ + + ++ Y++G E + Sbjct: 717 IGFPLLVRPSYVLGGRGMFISYNPQTLETYMAEAMRVSPDHPVYLDHYLEGGYECDVDAL 776 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++T + P I +++ + +G +G Sbjct: 777 CDGEDVYIGGVLEHIEEAGIHSG---DSATCIPPFSFSDRIVNQLRSITRQLALRLGVKG 833 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + + ++ +E N + T P ++ G Sbjct: 834 LINVQYAI--KNDTIYVIEANPRASRT----VPFISKSTGV 868 >gi|195953494|ref|YP_002121784.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum sp. Y04AAS1] gi|195933106|gb|ACG57806.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum sp. Y04AAS1] Length = 554 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 88/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G++V ++ + + ++ +PD+ Sbjct: 29 SGTQACKALMREGYEVVLVNSNPATIMTDEQLATKTYIEPLSVEVLEEIIKKERPDVLLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G +D ILE + + A D+ VP Sbjct: 89 TLGGQTALNLAKDLYESGILERYGVGIIGANYEAIKKGEDRALFAKAMEEIGLKVPPNAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M S I P +++P G ++ + P L + + Q+LI++ Sbjct: 149 VNSISEGMASIKDIGFPAILRPAFTLGGTGGSIVYNLEEFPAKLNAALEASPIHQVLIDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + Sbjct: 209 SLIGWKEFELEVIRDTKDNVVIVCSIENFDPMGVHTGDSITVAPAQTLTDKQYQMLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP S + +E+N P ++ S + G+ ++ Sbjct: 269 LAIIRKIGVDTGGSNIQFAVDPNSDNFYVIEMN--PRVSRSS--ALASKATGFPIAKV 322 >gi|330504839|ref|YP_004381708.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina NK-01] gi|328919125|gb|AEB59956.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina NK-01] Length = 1073 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ GF+V ++ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAYGVLEMVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.6 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 91/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + GF+ + D D V ++ +P Sbjct: 582 VHAALAMREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPEAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ +++ + + ++ ++ +L++++ IE+ Sbjct: 702 ALSKNIGYPMVVRPSYVLGGRAMEIVYQEEELKRYMREAVKVSNDSPVLLDRFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P I E++ Sbjct: 762 DVDAVCDGETVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEIREQVKKMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ ++ +E+N + T P ++ G S ++ Sbjct: 819 LGVIGLMNVQMAVQGED--IYVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866 >gi|146308635|ref|YP_001189100.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina ymp] gi|145576836|gb|ABP86368.1| carbamoyl-phosphate synthase large subunit [Pseudomonas mendocina ymp] Length = 1073 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ GF+V ++ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + + D+ R + + G+ S Sbjct: 89 TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ P +I+P G + + + + ++LLI++ Sbjct: 149 AHSMEEAYGVLEMVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 91/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ +P Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + + P + + Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPEAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ +++ + + ++ ++ +L++++ IE+ Sbjct: 702 ALSKGIGYPMVVRPSYVLGGRAMEIVYQEEELKRYMREAVKVSNDSPVLLDRFLNCAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P I E++ Sbjct: 762 DVDAVSDGETVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEIREQVKKMALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ ++ +E+N + T P ++ G S ++ Sbjct: 819 LGVVGLMNVQMAVQGED--IYVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866 >gi|322384094|ref|ZP_08057812.1| carbamoyl phosphate synthase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151174|gb|EFX44483.1| carbamoyl phosphate synthase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1069 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + + ++ +PD Sbjct: 30 GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFITQIIRQEQPDGLLPT 89 Query: 58 LHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + E + + T + A D R VP + Sbjct: 90 LGGQTGLNMAVELAKMGVLERENVRLLGTQLDAIERAEDRDLFRELMKELEQPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTVEEAVNFAGEIGYPIIVRPAYTLGGTGGGICGTEEELMEVVSSGIRYSPIGQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDKHDNCIVVCNMENLDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALNIEGGCNVQFALDPQSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP G Sbjct: 587 AIQSAGYEAVIINNNPETVSTDFSTSDRLYFEPLYLEDVLNVIEREKPIGVIVQFGGQTA 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + + + P ++ + + Sbjct: 647 INLAEPLAKAGVRILGTDLKNIDRAENRKEFEALLTALDIAQPPGGTVTNVDEAVGTASQ 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P +++P + ++ D+ + + + N +LI++Y+ G E+ + Sbjct: 707 FGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAIC 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + DI +++ + + + G+ Sbjct: 767 DKETVLIPGIMEHVERAG---VHSGDSIAVYPPQTLSDDIKRKIVEITTKIAKGLEIVGL 823 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ KV+ +E+N + T P ++ + ++ Sbjct: 824 VNIQFVIFQ--DKVYVIEVNPRSSRT----VPFLSKVTNIPMANVATRVI 867 >gi|123966133|ref|YP_001011214.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9515] gi|123200499|gb|ABM72107.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9515] Length = 1100 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 94/315 (29%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL AG+++ I D D V ++ KPD Sbjct: 29 SGTQACKALRKAGYEIILINSNPASIMTDPDIANKTYIEPLTPEIVSQIILKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 + G + V+ I A +++K +++ + ++ Sbjct: 89 TMGGQTALNLAVKLSESNFLKNNNVELIGADLKAINKAEDRKLFKESMEKINVNVCPSGI 148 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 S+ + S P +I+P +G + + + +Q+LIE Sbjct: 149 ASDLVEAMKVSKQINSYPLIIRPAFTLGGVGGGIAYNLEEFNDLCKSGLDESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEFELEVMRDTSDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAVNPNNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 62/180 (34%), Gaps = 10/180 (5%) Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P V++P + ++K + + ++ + +L++QY+ Sbjct: 727 QNIGFPLVVRPSYVLGGRAMEIVKDKIELSRYISEAVKVSPDHPILLDQYLSNAIEIDV- 785 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGC 240 + + + + S +S LP+ + + V+ L + Sbjct: 786 -DALCDENGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSQLTLETVKEWTKLIANRLNV 844 Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G+ F ++ +++ LE N + T P ++ G +L +++ +S Sbjct: 845 VGLINLQFAVTNINHQENELYILEANPRASRT----IPFVSKAIGKPVAKLATQLMQGSS 900 >gi|15607056|ref|NP_214438.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5] gi|22095487|sp|O67869|CARB1_AQUAE RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal section; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|2984303|gb|AAC07826.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5] Length = 557 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + + ++ +PD Sbjct: 29 SGTQACKALKQEGYEVILVNSNPATIMTDPEMADKTYIEPLTADILEEIIKKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + +LE + + A D+ K+ + S G+ V S Sbjct: 89 TLGGQTGLNLAVELYENGVLERYGVELIGANYEAIKKGEDRELFKETMESIGLKVPESAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G V + L + + ++L+++ Sbjct: 149 VRSVEEGLKAVEKIGFPVILRPAFTLGGTGSSVAYNVEEFKEKLKVALETSPIHEVLLDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Y+ ++ Sbjct: 209 SLIGWKEIEFEVVRDKADNVIIVCAIENFDPMGVHTGDSITVAPT-QTLTDKEYQMLRDA 267 Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +AIG G S F P S + +E+N P ++ S + G+ ++ Sbjct: 268 AIAVIRAIGVDTGGSNIQFALSPESGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVA 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 >gi|261419341|ref|YP_003253023.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. Y412MC61] gi|319766157|ref|YP_004131658.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC52] gi|261375798|gb|ACX78541.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC61] gi|317111023|gb|ADU93515.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC52] Length = 1065 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELIEIVSTGLKMSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 30/296 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T L A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + N +L+++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + ++ ++ + + Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ F+ V+ LE+N + T P ++ G L + A Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863 >gi|326433625|gb|EGD79195.1| D-alanine-D-alanine ligase [Salpingoeca sp. ATCC 50818] Length = 829 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 1/75 (1%) Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++ + R R D F LE+N PG M AG + Sbjct: 752 QLYNQCCRLFARLELRDYGRFDLRFSERDNVFKLLEVNPNPGWCWDGKLALMYERAGLPY 811 Query: 286 RELLLWMVEDASCLR 300 +L+ +V +A R Sbjct: 812 EQLIADIV-NAGANR 825 >gi|312622392|ref|YP_004024005.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kronotskyensis 2002] gi|312202859|gb|ADQ46186.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1075 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 99/318 (31%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ + D Sbjct: 29 SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + S++ Q+L+E+ Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S + P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVIAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + AL G K I D D S L L + NV+ Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKAEGVIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + P + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNNHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I +++ Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGIHSGDSISLYPARNISKYIEEKIVEYTLKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|213691634|ref|YP_002322220.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254813560|sp|B7GPW2|CARB_BIFLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|213523095|gb|ACJ51842.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457721|dbj|BAJ68342.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1127 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|78065905|ref|YP_368674.1| carbamoyl phosphate synthase large subunit [Burkholderia sp. 383] gi|77966650|gb|ABB08030.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp. 383] Length = 1084 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105 + G D +LE + + A + D+ + K ++ G+ Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGV 148 Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + V+ M P VI+P G + + + + Sbjct: 149 AHSMEEATQVHAEIMALTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|294785968|ref|ZP_06751255.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_27] gi|294486305|gb|EFG33668.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp. 3_1_27] Length = 1058 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + + ++ KPD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + IL+ + + + + + D+ R + VP + Sbjct: 90 LGGQVALNLAVSLHESGILDDCGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + +++ Q L+E+ Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 A++ G++ I+ + V +L KP G Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLIQEDVMEILDLEKPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + +A D+ + P+ + + + + Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALRNANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + ++ N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + + + + +G+ Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + K++ LE+N + T P ++ G + + + Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860 >gi|254458222|ref|ZP_05071648.1| carbamoyl-phosphate synthase, large subunit [Campylobacterales bacterium GD 1] gi|207085058|gb|EDZ62344.1| carbamoyl-phosphate synthase, large subunit [Campylobacterales bacterium GD 1] Length = 1085 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L++ G++V I+ + + ++ D Sbjct: 29 SGTQAVKTLKEQGYRVVLINSNPATIMTDPEFADRTYIEPIKEDVIAEIIKKENVDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE +E + + + +P Sbjct: 89 TMGGQTALNVATSMYEKGMLEGIEFLGATPEAIHKGEDRLAFKEAMIKIGMDLPFSMYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + + I P +I+ + G V + + ++LIE+ + Sbjct: 149 NMDDALKAAETIGFPIIIRASFTLAGGGSGVAYNMDEFKKLAARGLDESPVTEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + + Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRNASFD 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F DP + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREVGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 90/262 (34%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ + +PD ++H + L + + L+ D Sbjct: 616 FEPIDF-EHVRAVIENEEPDGI--IVHFGGQTPLKLADGLTKIGANIIGTTSAVIDLAED 672 Query: 93 KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V+ G+ + + P +++P G+ ++ + Sbjct: 673 REQFSNFVNKHGLKQPANGLARKKEEAGPIAEKLGFPVLVRPSFVLGGRGMRIVYSHAEL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + S ++ +LI++++D IEL + D + + + Sbjct: 733 DEYMALAISVSNEAPVLIDKFLDQAIELDVDAICDGTDVYIGSVMQHIEEAGIHSG---D 789 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ ++V++ +G G+ + +++ +E+N + T Sbjct: 790 SACSLPPVNLSDEMIEKVEQQTKTIALGLGVVGLMNVQYAI--FKDEIYLIEVNPRASRT 847 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ----VPFVSKATGMPLAKVATR 865 >gi|171915262|ref|ZP_02930732.1| carbamoyl-phosphate synthase large subunit [Verrucomicrobium spinosum DSM 4136] Length = 1089 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGVQACKALREEGYEVVLVNSNPATIMTDPEFAARTYVEPITPEVVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + LE + + A D++ K + G+ + S Sbjct: 89 TLGGQTALNTAMSLFKSGVLEKYNVRMIGAKADAIEKGEDRLLFKNAMLKIGLDLPQSGV 148 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + T+ ++ + + P +I+P G + + + + + +++LIE Sbjct: 149 AHKMEEATIIAEEIGTYPLIIRPAFTLGGSGGGIAYNREEFETIVARGIDMSPVNEVLIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + + + + + + Sbjct: 209 ESLLGWKEFEMEVMRDRADNCVVICSIENLDPMGVHTGDSITVAPIQTLTDREYQIMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G S F P S ++ +E+N P ++ S + G+ ++ Sbjct: 269 SFACIREIGVETGGSNIQFAVHPTSGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 37.2 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 57/171 (33%), Gaps = 10/171 (5%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 I P +++P + ++ D + + + + +L++++ D E+ Sbjct: 722 RIGYPSLVRPSFVLGGRAMQIVYSDAELIHYMQNAVEASPERPVLVDRFLEDATEVDVDC 781 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + ++ + P + ++ + A +A+ R Sbjct: 782 ISDGETTVVGAIMEHIEEAGIHSG---DSACVIPPFSLTKEMQVRITDAAKKLARALDVR 838 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ ++ +E+N + T P ++ G + + Sbjct: 839 GLMNMQLAV--KGDDLYVIEVNPRASRT----VPFVSKAIGVPLAKYAAKI 883 >gi|229013071|ref|ZP_04170236.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM 2048] gi|228748325|gb|EEL98185.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM 2048] Length = 1018 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229134696|ref|ZP_04263505.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST196] gi|228648742|gb|EEL04768.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST196] Length = 1018 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229168627|ref|ZP_04296349.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621] gi|228614783|gb|EEK71886.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621] Length = 1018 Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|160937903|ref|ZP_02085261.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC BAA-613] gi|158439129|gb|EDP16883.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC BAA-613] Length = 1072 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KPD A G Sbjct: 586 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A ++ + + P ++ ++ H Sbjct: 646 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDAILEQCNIPRPAGHTVFTAEEAKEAAHK 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 706 LGYPVLVRPSYVLGGQGMQIAISDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 765 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + S + +D + +A+ +G+ Sbjct: 766 DGTDILIPGIMQHIERTGIHSGDSISVYPAQDITQHNIDT---IVDYTEKLARALHVKGM 822 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G L ++ Sbjct: 823 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATRII 866 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 96/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + ++ + + + L + D+ K+ + V + Sbjct: 90 LGGQAGLNLAMELEDAGFFKEHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + + L + Q+L+E+ Sbjct: 150 EDVKHGLEIAEKIGYPVVLRPAYTLGGSGGGIAANPEQCAEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + + +A + Sbjct: 325 IALGYTLDEIRNAVTKK 341 >gi|11498873|ref|NP_070102.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) [Archaeoglobus fulgidus DSM 4304] gi|22095482|sp|O28994|CARB_ARCFU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|2649305|gb|AAB89970.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB) [Archaeoglobus fulgidus DSM 4304] Length = 1076 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ PD Sbjct: 29 SGSQACKALREEGYEVVLVNSNPATIMTDPEMADRVYIEPLDAEIVAKIIERETPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +L+ + + A + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVQLTEMGVLDKYGVELIGAKFEAIKKAEDRELFKEAMRKIGLDVPKSDV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + + + + +Q+LIE+ Sbjct: 149 AHDVSEALAIADEIGYPVVVRPAFTLGGTGGGIAYNREELREIAERGIKMSMINQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + ++ Sbjct: 209 GVLGWKEFELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQYLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IKIIREIGVETGGSNIQFAVHPENGRVVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 86/289 (29%), Gaps = 31/289 (10%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L+D G++ ++ V + + +P+ G Sbjct: 590 LKDEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEQPEGVIVQFGGQTPL 649 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + A ++ + P + I Sbjct: 650 NIARELEDSGARILGTSVDSIDIAEDRERFAELLERLNIPQPENGIAHSLEEAKEIARKI 709 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183 P +++P + ++ ++++ + ++ + +LI+++ D IE+ + Sbjct: 710 GFPVLVRPSYVLGGRAMEIVYDEETLERYITEALEVSPEKPILIDKFLEDAIEVEVDALC 769 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S ++ + P + + A+ G+ Sbjct: 770 DGEEVVIGGIMEHIEEAG---VHSGDSACVLPPVSLDEVTINTIVDYTRKLALALNVVGL 826 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + KV+ LE N + T P ++ G ++ + Sbjct: 827 INIQYAV--KDGKVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869 >gi|148642548|ref|YP_001273061.1| carbamoylphosphate synthase, large subunit, CarB [Methanobrevibacter smithii ATCC 35061] gi|222445957|ref|ZP_03608472.1| hypothetical protein METSMIALI_01605 [Methanobrevibacter smithii DSM 2375] gi|261349504|ref|ZP_05974921.1| carbamoyl-phosphate synthase, large subunit [Methanobrevibacter smithii DSM 2374] gi|167006445|sp|A5UKG5|CARB_METS3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|148551565|gb|ABQ86693.1| carbamoylphosphate synthase, large subunit, CarB [Methanobrevibacter smithii ATCC 35061] gi|222435522|gb|EEE42687.1| hypothetical protein METSMIALI_01605 [Methanobrevibacter smithii DSM 2375] gi|288861868|gb|EFC94166.1| carbamoyl-phosphate synthase, large subunit [Methanobrevibacter smithii DSM 2374] Length = 1058 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 30/300 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L + G + + D+D V ++ D Sbjct: 29 SGSQACKSLREEGIETVLVNSNPATIQTDMDMADTVYTEPLTPEIVSEIIKKENVDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASAL----SMDKMRSKQVVSSCGVPVCPSIL 112 + G G + L G + D + +P C ++ Sbjct: 89 TMGGQTGLNIATGLGDLGLLDGIKVLGSDIQTIKDVEDRDLFGHFMDKLNEPIPKCHAVE 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +++P G V ++ + + +Q+LI++ V Sbjct: 149 SVEEAIEAVKDIGYPVIVRPAFTLGGTGGGVAYNEEELIEIATHGLDMSFINQVLIDESV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + D + ++ + Sbjct: 209 LGWKEFEYEVMRDKEDTCIIVCNMENIDPMGIHTGESVVVAPAQNLNDRD-SQALRDASI 267 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +A+G +G F +P + + +E+N P ++ S + GY ++ + Sbjct: 268 KIIRALGIQGGCNIQFAVNPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKISSKI 323 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 29/294 (9%) Query: 25 ALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVLHGNFG 63 AL+D G + I D+ + ++ KPD G Sbjct: 572 ALKDEGIETILINNNPETVSTDYDISDKLFFEPITFEDVMGIIDQEKPDGVIVQFGGQTS 631 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V ++I T + + + + Sbjct: 632 INLAVPLANAGVKILGTPYESIDGVEDRELFAKLLNKLHIHQAPYGTANSFEEAREIAER 691 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I+ P +++P + ++ + + + ++ + +L++++ D IEL V+ Sbjct: 692 ITFPVLVRPSYVIGGRAMEIVYDNNELEKYMKEAVKVSPEHPILVDKFLEDAIELDVDVL 751 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P IP I ++ + + +G Sbjct: 752 CDGEEVFIAGIMEHIEEAG---VHSGDSACVIPPQTIPEHILNTIREYSTKLALELDVKG 808 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 + + V+ +E N + T P ++ G ++ W++ A Sbjct: 809 LMNIQYAVKLDEEMVYIIEANPRASRT----VPFVSKAIGVPLAKVATWIMTGA 858 >gi|289549279|ref|YP_003474267.1| carbamoyl-phosphate synthase L chain ATP- binding protein [Thermocrinis albus DSM 14484] gi|289182896|gb|ADC90140.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Thermocrinis albus DSM 14484] Length = 557 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + + ++ +PD Sbjct: 29 SGTQACKALVEEGYQVVLVNSNPATIMTDPGMAHRTYIEPLTVDILEEIIKVERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +LE + + A D+ K+ + G+ V PS Sbjct: 89 TLGGQTALNLAVKLYEEGVLERYGVELLGASYTAIKKGEDRQLFKKSMERIGLKVPPSAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + L + + Q+LI++ Sbjct: 149 VSSLEEALQAIKEIGFPAILRPAFTLGGTGGAIAYNMEEFVERLQIALKTSPIHQVLIDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEFEVVRDRKDNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAC 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IQIMREVGVDTGGSNIQFAVNPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|192360281|ref|YP_001983182.1| urea amidolyase-like protein [Cellvibrio japonicus Ueda107] gi|190686446|gb|ACE84124.1| urea amidolyase homolog [Cellvibrio japonicus Ueda107] Length = 1205 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 57/182 (31%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P ++K GG +G+ + D + + +++ Sbjct: 147 ANCIGYPVMLKSTAGGGGIGMQLCHSDSELIAAFDSVKRLGKNNFADDGVFLEKFIAAAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239 + + + + PA + ++ + ++ Sbjct: 207 HIEVQVFGDGQGTAVAIGERDCSSQRRNQKVVEECPAPNLPEAQRQAMQQVAEQLLASVC 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVED 295 R +F++D L + ++LE+N + G + + +L+ WM++ Sbjct: 267 YRNAGTVEFIYDSLDNRFYFLEVNT-----------RLQVEHGVTEEVYSVDLVEWMLKQ 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|158338511|ref|YP_001519688.1| carbamoyl phosphate synthase large subunit [Acaryochloris marina MBIC11017] gi|158308752|gb|ABW30369.1| carbamoyl-phosphate synthase, large subunit [Acaryochloris marina MBIC11017] Length = 1080 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL D G++V I+ + + V V+A +PD Sbjct: 29 SGTQACKALRDEGYEVVLINSNPATIMTDPETAERIYIEPLTPELVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L+ + + + A ++ D+ K+ + G+ VCPS Sbjct: 89 TMGGQTALNLAVTLAKTGVLDQYNVELIGAKLPAIEMAEDRKLFKEAMERIGLGVCPSGL 148 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + +Q + + P +++P G + + + Q+LIE Sbjct: 149 AETMAESQQIAQEIGTYPLIVRPAFTLGGTGGGIAYNQEEFEAIAQSGLDASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ + Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPIDGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI----LASALSMDKM 94 V +L P+ G V L P + ++ D+ Sbjct: 621 KEDVLNILEAENPEGIIIQFGGQTPLKLAVPLQTYLQGKPDGPKIWGTSPDSIDIAEDRE 680 Query: 95 RSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R +Q++ + + P+ N+ + I P V++P + ++ D+ + Sbjct: 681 RFEQILHTLNITQPPNGIARSNQEATEVAQRIQYPVVVRPSYVLGGRAMEIVYSDEELER 740 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + +LI+++++ + V A + + +S ++ Sbjct: 741 YMTFAVQVEPDHPILIDKFLE-DAIEVDVDAIADRTGEVVIGGIMEHIEQAGVHSGDSAC 799 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + + + ++ + Q + G+ F +V+ LE N + T Sbjct: 800 AIPTLSLGEETLATIREWSKQLAQQLNVIGLMNLQFAV--QGEQVYILEANPRASRT--- 854 Query: 273 IFPEMAAYAGYSFRELLLWM 292 P ++ G ++ + Sbjct: 855 -VPFVSKAIGLPLAQVAARL 873 >gi|124358354|gb|ABN05628.1| vancomycin resistance protein A [Enterococcus faecium] gi|124358356|gb|ABN05629.1| vancomycin resistance protein A [Enterococcus faecium] Length = 270 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 44/272 (16%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------------------- 50 + S A+ + ++ I + +S + Sbjct: 1 VKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLV 60 Query: 51 ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V Sbjct: 61 KKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVA 120 Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160 + G+ ++N+ + P +KP + GSS G+ + + + S+ Sbjct: 121 KNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESAR 178 Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------H 213 + ++LIEQ V G E+ C V+G+++ V Y + + Sbjct: 179 QYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 238 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 +PA + + +Q A ++A+GCRG++R Sbjct: 239 TVPADLSAEERGRIQETAKKIYKALGCRGLAR 270 >gi|332665548|ref|YP_004448336.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter hydrossis DSM 1100] gi|332334362|gb|AEE51463.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter hydrossis DSM 1100] Length = 938 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG + +L + G +VS I+ + S+ +L K D Sbjct: 29 SGSQASRSLREEGIEVSLINSNPATIMTDPVTADNVYLLPLTVESIVQILEERKIDAVLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + + + + I A L+ ++ +Q + G+ V PS Sbjct: 89 TMGGQTALNLAIEADKMGVWDKYGVRMIGVDIAAIELTENREAFRQHMIDIGLDVAPSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P VI+P G + K++ L + + + ++L+E+ Sbjct: 149 ANSFLEGKEAAQKIGFPLVIRPSYTLGGTGGGFVHKEEEFDAALRRGLNASPTHEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 AVLGWKEFELELLRDKNDSVVIICTVENFDPMGIHTGDSITVAPAMTLSDTAYQDMRDQA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G F DP++ K+ +EIN P ++ S + GY ++ Sbjct: 269 ILAMRSLGNFSGGCNIQFAQDPVTEKLIVIEIN--PRVSRSS--ALASKATGYPIAKISA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 33/284 (11%) Query: 25 ALEDAGFKVSQID-------VDRSVGLVL--------------AHLKPDLAFNVLHGNFG 63 A+++AG++ ++ D + L KP+ L G Sbjct: 585 AIKEAGYEAIMVNCNPETVSTDFDMADKLYFEPVFWEHLEEIIELEKPEGVIVQLGGQTA 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A P + + Sbjct: 645 LKLAETLHKKGIKIIGTSFANMDLAEDRGAFSDLLKELEIPYPDYGVADDVDEAIRIANK 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 + P +++P + ++ DQ + +L +++LI+ ++D E + Sbjct: 705 VGYPVLVRPSYVLGGQSMRIVINDQEVERHVLSIFKHMPENKVLIDHFLDRAKEAEIDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241 D + + S +S+ VLP +D + A +A+ R Sbjct: 765 FDGEDIHIMGIMEHIE----PAGIHSGDSSAVLPTYSLSVDAVATMVEHAEKLARALNIR 820 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 G+ F V+ +E N + T P +A + Sbjct: 821 GLINIQFAI--KDNHVYVIEANPRASRTT----PFIAKAYKVPY 858 >gi|239944152|ref|ZP_04696089.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998] gi|239990607|ref|ZP_04711271.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379] Length = 197 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 6/188 (3%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 M + +S P +KP + G+S GI + + + ++ + + E Sbjct: 1 MWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAINAAAEHDPVVLIEESVPTPFTEY 60 Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 ++ + + ++ + ++ + A Sbjct: 61 EVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELDSRLMEAAL 120 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A G +R D D +V+ EIN PG S FP + AG+S L M Sbjct: 121 AAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFSRPRQLELM 179 Query: 293 VEDASCLR 300 ++ A R Sbjct: 180 IDSALFHR 187 >gi|157863079|gb|ABV90644.1| carbamoyl-phosphate synthase large subunit [Pseudomonas sp. G] Length = 1073 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D ++V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E V+ D + + ++ S+ Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 LA L + S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGNGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 87/283 (30%), Gaps = 30/283 (10%) Query: 25 ALEDAGFK----------VSQIDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64 AL + G++ VS D V + KP G Sbjct: 588 ALRENGYENHHGQLQPETVSDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTPL 647 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + A ++ + + P ++ + + I Sbjct: 648 KLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAKI 707 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183 P V++P + ++ K++ + L + ++ +L++ + IE+ + Sbjct: 708 GYPLVVRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAVC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S ++ + P +P I E++ +G G+ Sbjct: 768 DGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPARIQDEMREQVKKMALELGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +E+N + T P ++ G S Sbjct: 825 MNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGISLA 861 >gi|113868420|ref|YP_726909.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha H16] gi|113527196|emb|CAJ93541.1| carbamoylphosphate synthase, large subunit [Ralstonia eutropha H16] Length = 1082 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAMAVQSRIAQETGTGGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQELGLRQPPNRTARAEDEALRLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAI 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVIG 828 Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 829 LMNVQFAIQQNDGVDTVYVLEVNPRASRT----VPYVSKATGLQLAKIAAR 875 >gi|206559639|ref|YP_002230400.1| carbamoyl phosphate synthase large subunit [Burkholderia cenocepacia J2315] gi|198035677|emb|CAR51564.1| carbamoyl-phosphate synthase large chain [Burkholderia cenocepacia J2315] Length = 1084 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + ++ P VI+P G + + + + Sbjct: 149 AHSMEEATKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|86606404|ref|YP_475167.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. JA-3-3Ab] gi|86554946|gb|ABC99904.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-3-3Ab] Length = 1074 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D V ++ +PD Sbjct: 29 SGTQACKALREEGYEVILVNSNPATIMTDPSMADRVYIEPVTADFVAQIIERERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + IL+ + + A + D+ KQ + G+ V S Sbjct: 89 TMGGQTALNVAVELARRGILDQYGVELIGAKREAIEKAEDRELFKQAMQRLGLAVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 H I P +I+P G V + + Q+L+E+ Sbjct: 149 ARSLAEAKQIAHEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAVNPANGEVRVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 33/283 (11%), Positives = 81/283 (28%), Gaps = 28/283 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL G++ + D D + L L + N++ G Sbjct: 585 ALRRLGYETIMVNSNPETVSTDYDTADRLYFEPLTYEEVMNLVEAEQPLGLILQFGGQTP 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I + A + P +++ Sbjct: 645 LKLAQGLAAAQAPIWGAAPDSIDIAEDRGRFGRLLEELGIRQPAHGLARSVEESLEIARR 704 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ DQ + + + + + +L++Q+++ + V Sbjct: 705 IGYPVVVRPSYVLGGRAMEIVYSDQDLRRYMQLAVAVDPNRPVLVDQFLE-DAVEVDVDA 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + +S ++ + + + + ++ QA+ G+ Sbjct: 764 IADHTGAVTIGGILEHIEQAGIHSGDSACVLPSRTLSPAVLQVIRDWTVKLAQALQVVGL 823 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + +V+ LE N + T P ++ G+ Sbjct: 824 INVQYAV--QKEQVYVLEANPRASRT----VPFVSKAIGHPLA 860 >gi|308173514|ref|YP_003920219.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit [Bacillus amyloliquefaciens DSM 7] gi|307606378|emb|CBI42749.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553554|gb|AEB24046.1| carbamoyl phosphate synthase large subunit [Bacillus amyloliquefaciens TA208] gi|328911654|gb|AEB63250.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus amyloliquefaciens LL3] Length = 1071 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + Q L+E+ Sbjct: 150 RTLQEAEEFVSRIGFPVIVRPAYTLGGTGGGICSNEAELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSRDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V ++ +P+ G Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + P+ + + + Sbjct: 640 INLAEELSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVSEAVKIAAS 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ L ++ Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITKIPMANLATKVI 860 >gi|56419687|ref|YP_147005.1| carbamoyl phosphate synthase large subunit [Geobacillus kaustophilus HTA426] gi|56379529|dbj|BAD75437.1| carbamoyl-phosphate synthase(glutamine-hydrolyzing) large chain [Geobacillus kaustophilus HTA426] Length = 1065 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKMSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPIGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T L A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + N +L+++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + ++ ++ + + Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ LE+N + T P ++ G L + Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860 >gi|312875938|ref|ZP_07735928.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797419|gb|EFR13758.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1075 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ + D Sbjct: 29 SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + S++ Q+L+E+ Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + L G K I D D S L L + NV+ Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVRAEGVIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + P + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNSHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I +++ Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|312793564|ref|YP_004026487.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180704|gb|ADQ40874.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1075 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ + D Sbjct: 29 SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + S++ Q+L+E+ Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + L G K I D D S L L + NV+ Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKAEGVIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + P + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNNHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I +++ Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|307718435|ref|YP_003873967.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila DSM 6192] gi|306532160|gb|ADN01694.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila DSM 6192] Length = 1071 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 107/313 (34%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + + ++ +PD Sbjct: 29 SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + V+ L+ + + + A + D+ + K+VV+S G+ V S + Sbjct: 89 TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGQFKEVVTSIGLDVPRSAM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + I P VI+P G + + L L ++ + + LIE+ Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + +D I + + + + + K Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHTGDSVTVAPIQTLSDWEYQKMRTAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + G S F P + ++ +E+N P ++ S FP A Sbjct: 269 IEVLRAIGVDCGGSNVQFAVRPDTGRMVVIEMN--PRVSRSSALASKATGFPIARCAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEVINEI 339 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 68/247 (27%), Gaps = 10/247 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 VG +L + L G + EI T + A Sbjct: 618 EDVGEILKKERTKKVVVQLGGQTPLNMAEALEAAGAEIVGTPVRGIKEAEDRGFFADLVR 677 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + I P +++P + + + L + Sbjct: 678 RVGLNQPANRAARTLEEVRAFAEEIGYPVLLRPSFVLGGKSMFIAFSPDELEEFLRRGVE 737 Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L++Q+ D E + D + + ++ P K Sbjct: 738 ISPDRPVLVDQFLEDAFEYDVDAVSDGENVYIGGIMQHIEAAGIHSG---DSACVFPPYK 794 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 ++ +++ + +G +G + ++ LE+N + T P ++ Sbjct: 795 SNPEVLTQMKEATVKIARELGVKGFLNIQYAV--KDDVLYVLEVNPRASRT----VPYLS 848 Query: 279 AYAGYSF 285 +G + Sbjct: 849 KASGVNM 855 >gi|322689606|ref|YP_004209340.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum subsp. infantis 157F] gi|320460942|dbj|BAJ71562.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum subsp. infantis 157F] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +LE + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|317481637|ref|ZP_07940672.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA] gi|322691567|ref|YP_004221137.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|316916927|gb|EFV38314.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA] gi|320456423|dbj|BAJ67045.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +LE + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|91784542|ref|YP_559748.1| carbamoyl phosphate synthase large subunit [Burkholderia xenovorans LB400] gi|91688496|gb|ABE31696.1| carbamoyl-phosphate synthase large subunit [Burkholderia xenovorans LB400] Length = 1084 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|312132389|ref|YP_003999728.1| carb [Bifidobacterium longum subsp. longum BBMN68] gi|311772601|gb|ADQ02089.1| CarB [Bifidobacterium longum subsp. longum BBMN68] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|227546801|ref|ZP_03976850.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212763|gb|EEI80644.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516174|emb|CBK69790.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum subsp. longum F8] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|239620781|ref|ZP_04663812.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516357|gb|EEQ56224.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|23336049|ref|ZP_00121278.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Bifidobacterium longum DJO10A] gi|23464695|ref|NP_695298.1| hypothetical protein BL0068 [Bifidobacterium longum NCC2705] gi|189438948|ref|YP_001954029.1| carbamoylphosphate synthase large subunit [Bifidobacterium longum DJO10A] gi|81847373|sp|Q8G815|CARB_BIFLO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|226700923|sp|B3DQ32|CARB_BIFLD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|23325259|gb|AAN23934.1| CarB [Bifidobacterium longum NCC2705] gi|189427383|gb|ACD97531.1| Carbamoylphosphate synthase large subunit [Bifidobacterium longum DJO10A] Length = 1127 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|329122075|ref|ZP_08250683.1| carbamoyl-phosphate synthase, large subunit [Dialister micraerophilus DSM 19965] gi|327466882|gb|EGF12398.1| carbamoyl-phosphate synthase, large subunit [Dialister micraerophilus DSM 19965] Length = 1068 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 9/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ P+ G + + I + + + A ++ + Sbjct: 615 EDVMEIIDKENPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P + ++ + P +++P + ++ + L ++ Sbjct: 675 QLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPSYVLGGRAMQIVYNYAELRQYLKEAVV 734 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +H +LI+QY+ G E+ + D+ + + + +S + P + Sbjct: 735 ASHEHPVLIDQYMIGREVEIDAISDSIDVCIPGIMEQIERSG---VHSGDSFAVYPPQHL 791 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I ++ A+ +G+ F+ KV+ +E+N + T P M+ Sbjct: 792 NQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK--DKVYVIEVNPRASRT----VPFMSK 845 Query: 280 YAGYSFRELLLWM 292 G + E + Sbjct: 846 VTGINMVECATRI 858 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G +L + G +V + DVD + ++ +PD Sbjct: 29 GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEIIKKERPDALLAT 88 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ +LE + S + A + D+ + + VP Sbjct: 89 LGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQKINQPVPESEIF 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D + P +I+P G + + + + + +Q+L+E+ Sbjct: 149 EELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIKLSPINQILVERS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + + +S V P D ++ R A Sbjct: 209 VAG--WKEIEFEVMRDKSDNCIIVCAMENIDPVGVHTGDSIVVAPTLTLTDTQYQMMRKA 266 Query: 232 F-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + D + K + +E+N P ++ S + GY ++ Sbjct: 267 SLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 322 Query: 291 WM 292 + Sbjct: 323 KI 324 >gi|313891643|ref|ZP_07825250.1| carbamoyl-phosphate synthase, large subunit [Dialister microaerophilus UPII 345-E] gi|313119921|gb|EFR43106.1| carbamoyl-phosphate synthase, large subunit [Dialister microaerophilus UPII 345-E] Length = 1068 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 9/253 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ P+ G + + I + + + A ++ + Sbjct: 615 EDVMEIIDKENPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P + ++ + P +++P + ++ + L ++ Sbjct: 675 QLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPSYVLGGRAMQIVYNYAELRQYLKEAVV 734 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 +H +LI+QY+ G E+ + D+ + + + +S + P + Sbjct: 735 ASHEHPVLIDQYMIGREVEIDAISDSIDVCIPGIMEQIERSG---VHSGDSFAVYPPQHL 791 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 I ++ A+ +G+ F+ KV+ +E+N + T P M+ Sbjct: 792 NQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK--DKVYVIEVNPRASRT----VPFMSK 845 Query: 280 YAGYSFRELLLWM 292 G + E + Sbjct: 846 VTGINMVECATRI 858 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G +L + G +V + DVD + ++ +PD Sbjct: 29 GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEIIKKERPDALLAT 88 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ +LE + S + A + D+ + + VP Sbjct: 89 LGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQKINQPVPESEIF 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D + P +I+P G + + + + + +Q+L+E+ Sbjct: 149 EELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIKLSPINQILVERS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + + +S V P D ++ R A Sbjct: 209 VAG--WKEIEFEVMRDKSDNCIIVCAMENIDPVGVHTGDSIVVAPTLTLTDTQYQMMRKA 266 Query: 232 F-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + D + K + +E+N P ++ S + GY ++ Sbjct: 267 SLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 322 Query: 291 WM 292 + Sbjct: 323 KI 324 >gi|78485224|ref|YP_391149.1| carbamoyl-phosphate synthase, large subunit [Thiomicrospira crunogena XCL-2] gi|78363510|gb|ABB41475.1| carbamoyl-phosphate synthase large subunit [Thiomicrospira crunogena XCL-2] Length = 1070 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + ++V ++A +PD Sbjct: 29 SGVQACKALKEEGYRVVLVNSNPATIMTDPEMADATYIEPIEWKTVRNIIAKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L E G A A+ + R + + + + + Sbjct: 89 TMGGQTALNCALDLDNHGVLEEFGVELIGANADAIDKAENRDRFRQAMNRIGLDMPVSDV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +I+P G + + +LLIE+ Sbjct: 149 AHNLEEAWEIQQRVGFPTIIRPSFTLGGSGGGIAYNKTEFEQICKFGLDLSPTKELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SILGWKEYEMEVVRDKNDNAIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F +P S ++ +E+N P ++ S FP A Sbjct: 269 LAVLREIGVETGGSNVQFSINPESGRMIIIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWMVEDAS 297 GY+ EL + + A+ Sbjct: 327 AVGYTLDELSNDITDGAT 344 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 98/322 (30%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A A+ + G++ + D D Sbjct: 564 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 616 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ KP G + I T + A Sbjct: 617 RLYFEPLTLEDVLEIVEVEKPKGVIIQYGGQTPLKLAEDLEAAGVPIIGTSPESIDLAED 676 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + + I P V++P + ++ D + Sbjct: 677 RERFQQLLHGLELKQPPNRTARSEDQALALANEIGYPLVVRPSYVLGGRAMEIVYNDTDL 736 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L+++++D IEL + D V + + Sbjct: 737 TRYMTEAVKVSNDSPVLLDRFLDDAIELDVDAVCDGEQVVIGGVMEHIEQAGIHSG---D 793 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P IP+ I E++ + G+ + F ++ LE+N + T Sbjct: 794 SACSLPPYSIPMHIQDEIRNQVEKMALGLNVVGLMNTQFAVKGED--IYVLEVNPRASRT 851 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 852 ----VPFVSKAIGSPLAKIAAR 869 >gi|312870006|ref|ZP_07730145.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris PB013-T2-3] gi|311094591|gb|EFQ52896.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris PB013-T2-3] Length = 1060 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ ++ + V V+ +P+ G Sbjct: 577 CVKALQALGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVMNVVDLEQPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T L +A PV + ++ +D+ Sbjct: 637 QTAINLAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLDLKQPVGLTATTHQGVIDA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + L +++ +LI+ Y++G E Sbjct: 697 AKQIGYPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P DI +++ A+ C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDDDIKQQIVDATKKLAIALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RGI F+ + + LE+N + T P ++ G ++ ++ Sbjct: 814 RGIMNIQFII--HDHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++ ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRKEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + +L+ L I + + + + D+ + K+++ VP + Sbjct: 89 TLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDEAEDREKFKELMQRLGEPVPASQT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + H I P +++P G + D+ + + Q LIE+ Sbjct: 149 VETVDEALVFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLDLSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADNAMVVCCMENFDPVGIHTGDSIVFAPSQTLSDRDYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|167756068|ref|ZP_02428195.1| hypothetical protein CLORAM_01588 [Clostridium ramosum DSM 1402] gi|237734054|ref|ZP_04564535.1| carbamoyl-phosphate synthase large subunit [Mollicutes bacterium D7] gi|167704060|gb|EDS18639.1| hypothetical protein CLORAM_01588 [Clostridium ramosum DSM 1402] gi|229382880|gb|EEO32971.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. D7] Length = 1065 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G +V I+ D+ + ++ +PD Sbjct: 30 GTQACRALKEEGIEVVLINSNPATIMTDKDIADKVYIEPLTVPVVKSLIIKEQPDSILPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G + + + LE + + L+ D++ K ++ + P S + Sbjct: 90 LGGQNALNIAMALADEGFLEEHNVQTIGTSTNTIKLAEDRLEFKTLMENINEPCAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P V++P G + + + + Q LIE+ Sbjct: 150 NHVDDALEFAKKIGYPVVVRPAYTLGGTGGGIAYDETELHDICSNGLRLSRVSQCLIERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGAGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ +G + +P S + +E+N P ++ S + GY +L Sbjct: 269 LNIITALDIQGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 32/294 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL++AG+ + D D V ++ PD A G Sbjct: 578 CVWALKEAGYDTIIVNNNPETVSTDFDIADRLYFEPLTPEDVENIVNIEHPDGAIVQFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + + +A ++ P ++ ++ Sbjct: 638 QTAIKLTKALMEMGVKILGTSADDVDAAEDRERFDEILEKCEIDRPRGSTVFTIEEALEV 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + D + + + +LI++Y+ G E+ Sbjct: 698 ANRLKYPVLVRPSYVLGGAGMEICLNDGDVKKFMKIINRQYQEHPILIDKYLAGKEVEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + + P + S +S V P KI I + +A+ Sbjct: 758 AICDENGILI----PGIMEHVERAGVHSGDSISVYPTQKIKQHIKDTIVEYTGRLAKALN 813 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 814 VIGLINIQFIV--YEDQVYVIEVNPRSSRT----IPYISKVTDIPVVDVATHVI 861 >gi|220918761|ref|YP_002494065.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956615|gb|ACL66999.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1067 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + ++ ++ +PD Sbjct: 29 SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + +L+ + + A D+ K+ ++ G+ S + Sbjct: 89 NLGGQTGLNLSSELARKGVLDRYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSEI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + + Q+L+E+ Sbjct: 149 ATTLDQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + +I V + ++ + I ++ +Q Sbjct: 209 SVLGWE-ELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTISPELQARLQDQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ AI G + F DP + +V +EIN + T S + G+ L+ Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 SML 325 Score = 37.5 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 81/268 (30%), Gaps = 13/268 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + +PD G D Q + I T + Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLDIARQLEEAGVRILGTSPETID 663 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + P +++P G+ V+ Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVVHD 723 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++++ + ++ + L +++++ DA D T+ VP + Sbjct: 724 EETLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTDAFVPAVMEHIELAGV 780 Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + P + + ++ +G G+ + V+ LE N + Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVIGLINVQYAI--AGGTVYVLEANPR 838 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ + +V Sbjct: 839 ASRT----VPLVSKVCDLPMARIAAQVV 862 >gi|167836214|ref|ZP_02463097.1| carbamoyl phosphate synthase large subunit [Burkholderia thailandensis MSMB43] Length = 1084 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + ++ P VI+P G + + + + Sbjct: 149 AHSMEEANKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQSDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|154252760|ref|YP_001413584.1| carbamoyl-phosphate synthase large subunit [Parvibaculum lavamentivorans DS-1] gi|154156710|gb|ABS63927.1| carbamoyl-phosphate synthase, large subunit [Parvibaculum lavamentivorans DS-1] Length = 1079 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+D G+++ ++ + V ++ +PD Sbjct: 29 SGTQACKALKDEGYRIILVNSNPATIMTDPELADATYIEPITPEVVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE + + A ++ D+ + + G+ S + Sbjct: 89 TMGGQTALNTALALADMGVLEKFGVEMIGAKREAIEMAEDRQLFRDAMDRIGLESPRSRV 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + Q + + +++L+E+ Sbjct: 149 AHNMEEALAALEFVGLPAIIRPSFTMGGTGGGIAYNRQEFSDIIESGLDASPVNEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 42.9 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 10/165 (6%) Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P VI+P G+ +++ + + ++ + +LI+ Y D IE+ Sbjct: 712 MIAERIGYPVVIRPSYVLGGRGMEIVRDAAHLDRYINEAVIVSGKSPVLIDYYLRDAIEV 771 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P + + E++R A Sbjct: 772 DVDALCDGKDVVICGIMEHIEEAG---VHSGDSACSLPPYSLKRETIAEIERQTRDMALA 828 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + G+ + ++ LE+N + T P +A G Sbjct: 829 LNVGGLMNVQYAI--QDGTIYVLEVNPRASRT----VPFVAKVIG 867 >gi|258511291|ref|YP_003184725.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478017|gb|ACV58336.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1082 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQIIRKERPDGLLAT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ E +E+ T + A +K R VP + Sbjct: 90 LGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQEIGQPVPRSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +I+P G + + + + + + Q+L+EQ Sbjct: 150 RNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLTLSPIHQVLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G D T I V + ++ + + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDADGTAIVVCNMENMDPVGVHTGDSIVVAPSQTLSDEEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+G +G DP S + + +E+N P ++ S + GY + Sbjct: 269 LQIIHALGIQGGCNVQLALDPDSSRYYVIEVN--PRVSRSS--ALASKATGYPIARIATK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ G++ I+ + V V+ +P+ G Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + +A +K + P ++ +++ Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + +I + + ++ + +L+++YV+GIE + Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ + ++ Q++ +G+ Sbjct: 771 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLQVKGL 827 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F+ +V +E+N + T P ++ G +L Sbjct: 828 MNVQFIV--HDGEVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866 >gi|157376535|ref|YP_001475135.1| carbamoyl phosphate synthase large subunit [Shewanella sediminis HAW-EB3] gi|157318909|gb|ABV38007.1| carbamoyl-phosphate synthase, large subunit [Shewanella sediminis HAW-EB3] Length = 1072 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE + + A + D+ R + + + G+ + + Sbjct: 89 TMGGQTALNCALELESKGVLEEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLECPRAGI 148 Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + Q + +LLI++ Sbjct: 149 AHTLDEANAVVAELGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++ + S Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVERAVISAER 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ +Q + ++ S ++ +L+++++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + DI ++ +G G Sbjct: 767 CDGETVVVGSIMEHIEQAG---VHSGDSGCSLPPYSLSDDIQNRMREQVGKLAMELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|328951022|ref|YP_004368357.1| carbamoyl-phosphate synthase, large subunit [Marinithermus hydrothermalis DSM 14884] gi|328451346|gb|AEB12247.1| carbamoyl-phosphate synthase, large subunit [Marinithermus hydrothermalis DSM 14884] Length = 1030 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 89/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL +AG++V ++ + + ++A +PD Sbjct: 29 SGTQAVKALRNAGYQVVLVNSNPATIMTDPELAEATYIEPLTPEFIERIIAKERPDALLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G +LE + + A D+ + + GV V + Sbjct: 89 TLGGQTALNLATALWEAGVLERYGVELIGANHEAIKKGEDREAFQAAMRKIGVEVPRGKM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ + + P V++P G ++ L + L+E+ Sbjct: 149 VHSLEEGLAFAREVGYPVVVRPSFTLGGTGGGFAHSEEEFIRVLTAGLQQSPVHTALVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + ++ + Sbjct: 209 SILGWKEYELEVMRDHADTVVIITSIENLDPMGVHTGDSITVAPAQTLTDVEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 269 RAIIREIGVDTGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGYPIAKI 322 Score = 36.0 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 33/290 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL++AGF+ + D D + L L + N++ G Sbjct: 587 ALQEAGFETIMVNSNPETVSTDYDTADRLYFEPLTFEDVLNLVEHETPVGVILSLGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + +A + P + Sbjct: 647 LKLAKRLAEAGVPILGTPPEAIHTAEEREAFNRLTQSLGIPQPKGAVARDPLHAQELAET 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGIELTCGVM 182 + P +++P + V++ + + L + ++ +QY++G Sbjct: 707 LGYPLMVRPSYVLGGRAMQVVRTPEELRRYLAEVYGALAEKPSILLDQYLEGALELDVDA 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 V + + + S P + + + V+ QA+G RG Sbjct: 767 IADGERVVVAGIMEHVERAGVHSGDSATLLP--PTSLTPQLLETVKDYTRRLAQALGVRG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + + V+ LE N + T P ++ G+ + L+ Sbjct: 825 LLNVQYAV--KDDTVYVLEANPRASRT----VPFVSKAIGHPLAKYAALI 868 >gi|295677143|ref|YP_003605667.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. CCGE1002] gi|295436986|gb|ADG16156.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. CCGE1002] Length = 1088 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/305 (11%), Positives = 91/305 (29%), Gaps = 42/305 (13%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-----------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + G+ F ++ LE+N + T P ++ Sbjct: 821 LNVIGLMNVQFAIQQVPSATNAADGSKDDIIYVLEVNPRASRT----VPYVSKATSLPLA 876 Query: 287 ELLLW 291 ++ Sbjct: 877 KIAAR 881 >gi|229092932|ref|ZP_04224065.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42] gi|228690436|gb|EEL44220.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42] Length = 1018 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLAIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|257875735|ref|ZP_05655388.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20] gi|257809901|gb|EEV38721.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20] Length = 1069 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 38 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 97 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + +L + L D + +P Sbjct: 98 LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 156 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + ++ + + Q LIE+ Sbjct: 157 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + Y+ ++ Sbjct: 217 SIAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 275 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 276 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 331 Query: 291 WM 292 + Sbjct: 332 KI 333 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 587 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 646 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + + Sbjct: 647 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 706 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + +L+++Y+ G E + Sbjct: 707 EIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ ++ + C G Sbjct: 767 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ + Sbjct: 824 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 868 >gi|257866102|ref|ZP_05645755.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30] gi|257872433|ref|ZP_05652086.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10] gi|257800036|gb|EEV29088.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30] gi|257806597|gb|EEV35419.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10] Length = 1069 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 38 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 97 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + +L + L D + +P Sbjct: 98 LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 156 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + ++ + + Q LIE+ Sbjct: 157 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + Y+ ++ Sbjct: 217 SIAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 275 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 276 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 331 Query: 291 WM 292 + Sbjct: 332 KI 333 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 587 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 646 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + + Sbjct: 647 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 706 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + +L+++Y+ G E + Sbjct: 707 EIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ ++ + C G Sbjct: 767 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ + Sbjct: 824 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 868 >gi|222529369|ref|YP_002573251.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor bescii DSM 6725] gi|222456216|gb|ACM60478.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1075 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 97/318 (30%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ K D Sbjct: 29 SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKEKVDSILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + S++ Q+L+E+ Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDTLKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + AL G K I D D S L L + NV+ Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKPEGIIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + P + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGFTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDNDIVEMLSYAKN-LNDHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I +++ Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|257468426|ref|ZP_05632520.1| carbamoyl phosphate synthase large subunit [Fusobacterium ulcerans ATCC 49185] gi|317062692|ref|ZP_07927177.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium ulcerans ATCC 49185] gi|313688368|gb|EFS25203.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium ulcerans ATCC 49185] Length = 1068 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 98/290 (33%), Gaps = 32/290 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + +L KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 +++ T + + A ++ P ++ ++ + Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEELDIKRPKGRAVWDIEHGIEIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I+ P +++P G+ + + ++ L S + + +LI++Y++GIEL + Sbjct: 701 EINYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAV 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + + ++ + + +A+ + Sbjct: 761 CDGEEVLI----PGVMEHLERAGIHSGDSITIYPQQNLYEGTEDKILEITYKIAKALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G E+ Sbjct: 817 GMMNIQFI--AYENELYVIEVNPRSSRT----VPYISKVSGVPVIEIATR 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 97/316 (30%), Gaps = 41/316 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+A KPD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITLDFVEKVIAKEKPDSVIA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 + G G + + ILE + + + A D+ ++ ++ + Sbjct: 88 GMGGQTGLNMVVELHEKGILEKYGVKVIGTSVEAIKKGEDREIFRETMNKLGEPIIQSKI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G + + L++ + + Q+L+E+ Sbjct: 148 VETLEEGFEVAREIGYPVVVRPAYTLGGTGGGIANDPNELEDILMKGLALSMVGQVLLEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + + ++ Sbjct: 208 SIYGW-KEIEYEVIRDKNGNTIVVCNMENVDPVGIHTGDSIVVAPTQTLSDKECRMLRAS 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-- 288 A +G G F P S + +EIN P ++ S + GY + Sbjct: 267 AVKIVNEVGVIGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVST 322 Query: 289 -------LLWMVEDAS 297 L ++ +A+ Sbjct: 323 KLAMGYTLNEIINEAT 338 >gi|289423681|ref|ZP_06425480.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus anaerobius 653-L] gi|289155931|gb|EFD04597.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus anaerobius 653-L] Length = 1071 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 S A AL G + I D D V ++ KP+ Sbjct: 577 SVHAVM-ALRRLGIETIIINNNPETVSTDFDTSDKLYFEPLTEEDVYHIIEKEKPEGVIL 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + ++I T + +A +K + P + Sbjct: 636 QFGGQTAIKLAKFLSEKGVKILGTDFKDIDAAEDREKFEELLEKLNINRPKGKGVWSVAE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P +++P G+ + + + L + + + +LI++Y+ G E Sbjct: 696 GVEVATKLGYPVLVRPSYVLGGQGMEITYDETRLVQYLEDAFERDAINPVLIDKYLTGRE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + P++ D I +++ Sbjct: 756 IEVDAICDGKDILI----PGIMEHLERAGVHSGDSITMYPSQRISDNIKEKIYDYTKKMA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F+ ++ +E+N + T P ++ +G +L Sbjct: 812 LNLNVVGMVNIQFI--EYKGDLYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 97/319 (30%), Gaps = 42/319 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + +PD Sbjct: 29 SGTQACQALKEEGIEVVLINSNPATIMTDQEIADHIYIEPLTLDFIEKTIEKERPDSILA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + ++ ++I T + D R V Sbjct: 89 GMGGQTGLNLAIELHEAGILDKYNVKIIGTSVESIKKGEDRDLFREVMKEIGEPVIESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P V++P G + + + + L + Q L+E+ Sbjct: 149 VTTLDAGLEYALKIGYPVVVRPAYTLGGTGGGIAENEIELREILTHGLELSPVSQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229 + G + + + +S V P++ ++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSKGNCITVCNMENIDPVGVHTGDSIVVAPSQTLSNLEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + AIG G +P S + +EIN P ++ S + GY ++ Sbjct: 267 ASLKIIDAIGVEGGCNVQMALNPESLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVA 322 Query: 290 LWM--------VEDASCLR 300 + +++A + Sbjct: 323 AKIALGYSLDEIQNAVTKK 341 >gi|223984195|ref|ZP_03634343.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM 12042] gi|223963810|gb|EEF68174.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM 12042] Length = 729 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 95/288 (32%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ KP L G Sbjct: 246 AIQQAGYEAIVINNNPETVSTDYSISDKLYFEPLCIEDVMNVIDLEKPQGVIVSLGGQTA 305 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + + A + D P+ ++ + + Sbjct: 306 INLADRLNKLNVPIIGTGTEAIDKAENRDLFEKVVTECGIPQPLGQAVTNIEDGLKVANR 365 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +D+ + L + + +L+++Y+ G E+ + Sbjct: 366 IGYPVLVRPSYVLGGRAMQIVHQDEELIEYLTSAVKIDQDQPVLVDKYIHGCEVEVDAIC 425 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + P + + +Q AIG G+ Sbjct: 426 DGKDVFIPGIMQLVEATG---VHSGDSMSVYPPYSLSDKVKATIQEYTVKLGLAIGIEGL 482 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F+ D + +V +E+N + + S P ++ G + Sbjct: 483 FNIQFIVDE-NDEVSVIEVNPR---SSRS-VPFLSKATGVPMANIATK 525 >gi|78777664|ref|YP_393979.1| carbamoyl phosphate synthase large subunit [Sulfurimonas denitrificans DSM 1251] gi|78498204|gb|ABB44744.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas denitrificans DSM 1251] Length = 1085 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L++ G++V I+ + + + ++ K D Sbjct: 29 SGTQAVKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPIREDIIAKIIKDEKVDAVLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE +E + + +P + Sbjct: 89 TMGGQTALNVATSMYKKGMLEGVEFLGASPEAIHKGEDRSAFNKAMIKIGMDLPKSRNAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P + + + G V + + + S + ++ I + + Sbjct: 149 SVEEALEVALEIGFPVISRASFTLAGGGSGVAYNMEEFKILAQEGISASPVSEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + + Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFD 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F DP + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 90/262 (34%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ + KPD ++H + L + + L+ D Sbjct: 616 FEPIDF-EHVREVIENEKPDGV--IVHFGGQTPLKLANALTKIGANIAGTPSHVIDLAED 672 Query: 93 KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V+S G+ + D + P +++P G+ ++ + + Sbjct: 673 REQFSNFVNSHGLKQPANGLARTKDEAHDIALRLGFPVLVRPSYVLGGRGMRIVYSQEEL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + ++ +L+++++D IEL + D + + Sbjct: 733 RQYMDLAVLVSNDAPVLVDKFLDQAIELDVDAICDGVDVYIGSVMQHIEEAGIHSG---D 789 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ +V+ +G RG+ + +++ +E+N + T Sbjct: 790 SACSLPPVSLSKELIDQVEAQTKTIALGLGVRGLMNVQYAI--YQDEIYLIEVNPRASRT 847 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ----VPFVSKATGMPLAKVATR 865 >gi|218290464|ref|ZP_03494584.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239485|gb|EED06680.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1082 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQIIRKERPDGLLAT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ E +E+ T + A +K R VP + Sbjct: 90 LGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQEIGQPVPRSAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +I+P G + + + + + + Q+L+EQ Sbjct: 150 RNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLTLSPIHQVLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G D T I V + ++ + + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDADGTAIVVCNMENMDPVGVHTGDSIVVAPSQTLSDEEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+G +G DP S + + +E+N P ++ S + GY + Sbjct: 269 LQIIHALGIQGGCNVQLALDPHSSRYYVIEVN--PRVSRSS--ALASKATGYPIARIATK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ G++ I+ + V V+ +P+ G Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + +A +K + P ++ +++ Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + +I + + ++ + +L+++YV+GIE + Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ + ++ Q++ +G+ Sbjct: 771 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLNVKGL 827 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F+ +V +E+N + T P ++ G +L Sbjct: 828 MNVQFIV--HDGQVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866 >gi|209517190|ref|ZP_03266035.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160] gi|209502326|gb|EEA02337.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160] Length = 1084 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 86/309 (27%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKATVAELKRQTAAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKDDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|251796812|ref|YP_003011543.1| urea carboxylase [Paenibacillus sp. JDR-2] gi|247544438|gb|ACT01457.1| urea carboxylase [Paenibacillus sp. JDR-2] Length = 1215 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 24/187 (12%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174 I P ++K GG +G+ V + ++++ + +G L + Sbjct: 146 HAAEIGYPVILKSTAGGGGIGMRVCEDEEALRAAFDSVRHLAEANFKNGGMFLEKYIAKA 205 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + + G+ + +V + K + P ++ +I +RLA A Sbjct: 206 RHVEVQIFGNGNGEVVALGERDCSVQRRNQKVVEESPAPQFPEEVRTEILACAKRLAAEA 265 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290 G R +FL+DP S K ++LE+N + G+T G +L+ Sbjct: 266 ----GYRSAGTVEFLYDPSSFKFYFLEVNTRLQVEHGVTE--------EVLGL---DLVE 310 Query: 291 WMVEDAS 297 WMV++A+ Sbjct: 311 WMVKEAA 317 >gi|315185545|gb|EFU19314.1| carbamoyl-phosphate synthase large subunit [Spirochaeta thermophila DSM 6578] Length = 1071 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 107/313 (34%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + + ++ +PD Sbjct: 29 SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + V+ L+ + + + A + D+ + K+VV+S G+ V S + Sbjct: 89 TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGKFKEVVTSIGLDVPRSAM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + I P VI+P G + + L L ++ + + LIE+ Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + +D I + + + + + K Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHTGDSVTVAPIQTLSDWEYQKMRTAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + G S F P + ++ +E+N P ++ S FP A Sbjct: 269 IEVLRAIGVDCGGSNVQFAVRPDTGRMVVIEMN--PRVSRSSALASKATGFPIARCAAKL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEVINEI 339 Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 53/167 (31%), Gaps = 10/167 (5%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178 I P +++P + + + L + + +L++Q+ D E Sbjct: 698 FAEEIGYPVLLRPSFVLGGKSMFIAFSPDELEEFLRRGVEISPERPVLVDQFLEDAFEYD 757 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + ++ P K ++ +++ +A+ Sbjct: 758 VDAVSDGENVYIGGIMQHIEAAGIHSG---DSACVFPPYKSNPEVLTQMKDATVKIARAL 814 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 G G + ++ LE+N + T P ++ +G + Sbjct: 815 GVEGFLNIQYAV--KDDVLYVLEVNPRASRT----VPYLSKASGVNM 855 >gi|148244935|ref|YP_001219629.1| carbamoyl-phosphate synthase large subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326762|dbj|BAF61905.1| carbamoyl-phosphate synthase large subunit [Candidatus Vesicomyosocius okutanii HA] Length = 1068 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG SAL + G++V + D R V ++ KPD Sbjct: 29 SGAQACSALREEGYRVILVNSNPATIMTDPTMADSTYIEPIEWRIVEKIIEVEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +L+ + + A + D+ ++ + G+ + + Sbjct: 89 TMGGQTALNCALDLERHGVLDKHCVEMIGAKKEAINKAEDRDLFREAMLKIGLDMPKAAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P VI+P G + + ++LL+E+ Sbjct: 149 AHNMEEAFTIQETVGFPTVIRPSFTMGGSGGGIAYNKDEFVKICECGLDLSPINELLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SILGWKEFELEVIRDRKDNCIIICSIENFDPIGIHTGDSITVAPAQTLTDKEYQAMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFALNPENGRLTIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 95/291 (32%), Gaps = 35/291 (12%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D+ V ++ PD ++H Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDVLAIIDIENPDGI--IVHYGGQ 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQ 121 + LE + A L+ D+ R +++ + + D Sbjct: 645 TPLKLAKALEKSGANIIGTTPDAIDLAEDRERFSKMLQDLKLKQPLNGTARSLEQAQDIA 704 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180 + I P V++P + ++ S+ + + ++ +L++ ++D IE+ Sbjct: 705 NAIGFPLVVRPSYVLGGRAMKIVYDKDSLEHYMYTAVKVSNDSPILLDSFLDHAIEVDID 764 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + ++ + P + + E++ L + + Sbjct: 765 AICDGENVVIGGIMQHIEQAGIHSG---DSACSLPPYSLTNKVLDEMRAQVILMAKKLNV 821 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ + + + +++ +E+N + T P ++ G + Sbjct: 822 VGLMNTQLAY--QNGEIYIIEVNPRASRT----VPFVSKAIGVPLANIAAR 866 >gi|283795621|ref|ZP_06344774.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1] gi|291077292|gb|EFE14656.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1] Length = 1088 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 30/288 (10%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C L+ G++V ++ V +L KP G Sbjct: 577 CVQVLKGLGYEVVIVNNNPETVSTDFDTADRLYFEPLTTEDVKNILQAEKPCGVVVAFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A ++ P +++ + + Sbjct: 637 QTAIRLTRFLAESGVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P +I+ + I + + N + +LI++Y++G E+ Sbjct: 697 AESVGYPVLMRPSYVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + + + + +++ + + Sbjct: 757 AIYDGTDILLPGIMEHVERSGIHSG---DSIAIYPAMHLTPETEEKIAETTKKLCEGLNA 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 GI ++ +++ +E+N + T P ++ G +L Sbjct: 814 VGIVNVQYIV--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + G ++ ++ + +V ++ KPD + Sbjct: 30 GAQACRALREEGLEIVLVNSNPATIMTDHMMADRIYIEPLTLETVKRIIEKEKPDSILSG 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G +Q LE + S + D+ K + S G P PS + Sbjct: 90 LGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQLFKDTMESIGQPCVPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q+L+E+ Sbjct: 150 NETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREIARNGLALSPIHQILVEKG 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + +F + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVIRDRTGNCITVCSMENFDPVGIHTGDSIVIAPAVTLADRE-YQMLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LRIVDTLQVEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|283779305|ref|YP_003370060.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM 6068] gi|283437758|gb|ADB16200.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM 6068] Length = 1095 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+ V ++ + V V+ +PD Sbjct: 29 SGTQACKALREEGYVVVLVNSNPATIMTDPEMADRTYIEPLTWEVVSKVIEKERPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + + +LE + + A + ++ + KQ + G+ C Sbjct: 89 TLGGQTGLNLAMDLAKHGVLEKYGVEMIGANAKVIAKAEEREQFKQAMEKIGLECCRGET 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I ++ P V++P G + + + + + ++LIE+ Sbjct: 149 IKTVEDARRVLQMVGLPCVVRPSFTLGGSGSAIAYNQGEFDMLVRRGLDQSPVREVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEYEMEVMRDMDDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVIREIGVETGGSNIQFAIHPQTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 60/169 (35%), Gaps = 10/169 (5%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 + P +++P + + + ++ G +LI+++ D E+ Sbjct: 712 KVGFPSLVRPSFVLGGRAMEICYDQAQFERFVAEAFVVAQGQPVLIDRFLEDATEVDVDC 771 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S ++ + P +P + +E++ + + Sbjct: 772 ISDGENVVIAGIMEHIEEAG---VHSGDSACAIPPYSLPGPVIQEIREATHAMARHLKVV 828 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F + ++ LE+N + T P +A G S ++ Sbjct: 829 GLMNVQFAVKKEEGRPVIYILEVNPRASRT----VPFVAKATGLSVAKI 873 >gi|319892195|ref|YP_004149070.1| Carbamoyl-phosphate synthase large chain [Staphylococcus pseudintermedius HKU10-03] gi|317161891|gb|ADV05434.1| Carbamoyl-phosphate synthase large chain [Staphylococcus pseudintermedius HKU10-03] gi|323464704|gb|ADX76857.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus pseudintermedius ED99] Length = 1057 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G + ++ L + + + + + D+ + +++ VPV S +V Sbjct: 90 LGGQTGLNMAIELHNSGVLAENNVTLLGTKLSSIEQAEDRELFRSLMNDLNVPVPESDIV 149 Query: 114 NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 N + P +++P G + D+ + + ++ Q LIE+ Sbjct: 150 NTLEQAFAFKEAVGYPLIVRPAFTMGGTGGGICHNDEELREVVSNGLKYSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKVIRALEIEGGCNVQLALDPHSMQFYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIQNAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + + P + + +D+ Sbjct: 640 INLADKLAKYGVKILGTSLEDLNRAEDRKEFEALLNKIDVPQPKGKTATSAQEALDNARD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + ++ + +L+++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYNDAELENYMNEAVKASPEHPVLVDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + D+ ++ + + G+ Sbjct: 760 DGETVMIPGIMEHIERAG---VHSGDSIAVYPPQTLSQDVIDTLEAYTIKLAKGLNVIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ +L + + Sbjct: 817 INIQFVLAHDG--VYVLEVNPRASRT----VPFLSKITEIQMAQLAMQAI 860 >gi|256829553|ref|YP_003158281.1| hypothetical protein Dbac_1774 [Desulfomicrobium baculatum DSM 4028] gi|256578729|gb|ACU89865.1| protein of unknown function DUF201 [Desulfomicrobium baculatum DSM 4028] Length = 340 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 118/301 (39%), Gaps = 24/301 (7%) Query: 19 GKACASALEDAGFKV--SQIDVDRS-VGLVLAHLKPDLAFNV---LHGNFGEDGLVQAIL 72 ++ +L G++ + D S + LAH +P++ FN+ HG L A+ Sbjct: 28 ARSVRESLARCGWRTSEHVLGSDPSALETSLAHRRPNVIFNLVESCHGLASLACLAPALF 87 Query: 73 ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129 P+T + + AL+ DK +++++ + G+PV P + + R Sbjct: 88 RKAGFPFTGADEGSMALAGDKALARRLLHAAGLPVPPGVTMGELQRGVFPGPGTYIIKAR 147 Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---- 185 + G +V ++ + L ++ + G + E YV G E ++ + Sbjct: 148 FEDASLGLGPDCVVDVREGAELLAAMREFAPRMGGDCVAEGYVRGREFNLALLAEPGGGV 207 Query: 186 -----SLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPAKIPLDIYKEVQRLAFLAH 235 + V + A+P Y K+ ++ + D+ E++R+ Sbjct: 208 RDLPLAEMVFDSAMPGPAILHYAAKWDQGSADYAASVRSFDLDGEEDLVLEMKRIGRACW 267 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + G +R DF +++ +++N P +TP + F A AG L+ +V D Sbjct: 268 ELFNLAGYARIDFRVAGP-GQIYVIDVNPNPCITPDAGFAAAAQRAGLDHAALVQEIVFD 326 Query: 296 A 296 A Sbjct: 327 A 327 >gi|223984193|ref|ZP_03634342.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM 12042] gi|223963851|gb|EEF68214.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM 12042] Length = 330 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V I+ D ++ ++ +PD Sbjct: 30 GTQACLALREEGYEVILINSNPATIMTDTNIADKVYMEPLTLEYVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111 L G G + +Q +LE + + + D+ R K + G P S Sbjct: 90 LGGQTGLNMAMQLAKKGVLEECRCEILGTDFESIDQAEDRQRFKDLCLRIGQPCLESYVA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P V++P G D + + + ++L+E+ Sbjct: 150 RTIEEVVEYANKIGYPVVLRPAFTLGGTGGGFAYDDAEVIALGKNALKLSPVSEVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ A Sbjct: 210 IKG-YKEIEFEVMRDHNDTAIVICSMENIDPVGVHTGDSMVVAPCQTLSNKEYQLLRNAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G F DP S + +E+N P ++ S + AG+ + Sbjct: 269 LTLIRELKIEGGCNVQFALDPFSFDYYVIEVN--PRVSRSS--ALASKAAGFPIARVSSK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|325845260|ref|ZP_08168564.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1] gi|325488701|gb|EGC91106.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1] Length = 1061 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + ++ +PD Sbjct: 30 GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKIIRKERPDAVLPS 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +V+ + + + A D R +P + Sbjct: 90 LGGQTGLNLVVELAEDGILRECNVEILGTDLSAIKKAEDRDLFRELMFELKQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G ++ + ++ + + + + Q LIE+ Sbjct: 150 NTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVENGLNLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLADREYHMLREVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIIRALGIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P+ G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A D+ P+ + ++ + Sbjct: 640 INLASKLQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +I D I + ++ N + +LI++Y+ G E+ + Sbjct: 700 IGYPVLLRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + + + + + G+ Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ +V+ LE+N P ++ ++ P Sbjct: 817 LNIQFVVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854 >gi|325570248|ref|ZP_08146114.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC 12755] gi|325156731|gb|EGC68905.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC 12755] Length = 1061 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + +L + L D + +P Sbjct: 90 LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + ++ + + Q LIE+ Sbjct: 149 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 268 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + + Sbjct: 639 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + +L+++Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ ++ + C G Sbjct: 759 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 860 >gi|293376106|ref|ZP_06622356.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis PC909] gi|292645260|gb|EFF63320.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis PC909] Length = 1061 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + ++ +PD Sbjct: 30 GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKIIRKERPDAVLPS 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +V+ + + + A D R +P + Sbjct: 90 LGGQTGLNLVVELAEDGILRECNVEILGTDLSAIKKAEDRDLFRELMFELKQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G ++ + ++ + + + + Q LIE+ Sbjct: 150 NTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVENGLNLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLADREYHMLREVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LTIIRALGIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P+ G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A D+ P+ + ++ + Sbjct: 640 INLASKLQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +I D I + ++ N + +LI++Y+ G E+ + Sbjct: 700 IGYPVLLRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + + + + + G+ Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ +V+ LE+N P ++ ++ P Sbjct: 817 LNIQFVVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854 >gi|254424145|ref|ZP_05037863.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC 7335] gi|196191634|gb|EDX86598.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC 7335] Length = 1070 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D + V+ +PD Sbjct: 19 SGTQACKALREEGYEVVLVNSNPATIMTDPDIADRTYIEPLTADLLEQVIVRERPDALLP 78 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +L+ + + + A + D+ K+ + GV VCPS Sbjct: 79 TMGGQTALNLAVELAKCGVLDKYGVELIGAKLEAIEKAEDRKLFKEAMLKIGVGVCPSGL 138 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ +Q + S P +I+P G + + + Q+LIE Sbjct: 139 AETMDESWEINQQIGSYPLIIRPAFTMGGSGGGIAYNKEEFETICRSGLEASPVSQILIE 198 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 199 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 258 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ + Sbjct: 259 SIKIIREIGVETGGSNIQFSVNPDTGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 314 Query: 290 LWM 292 + Sbjct: 315 AKL 317 Score = 36.0 bits (81), Expect = 6.8, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 56/168 (33%), Gaps = 7/168 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D+ + + + +LI+++++ + Sbjct: 702 AREIDYPVVVRPSYVLGGRAMEIVYSDEDLVRYMTTAVQVEPDHPILIDKFLEN-AIEVD 760 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V A T + + +S ++ + + ++ F + + Sbjct: 761 VDAIADRTGTAVIGGIMEHIEQAGIHSGDSACTLPTVSLSEAALATIRDWTFKLAKRLNV 820 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ + +V+ +E N + T P ++ G +L Sbjct: 821 IGLMNIQYAI--RGEQVYIIEANPRASRT----VPFVSKATGARLAQL 862 >gi|34558426|ref|NP_908241.1| carbamoyl phosphate synthase large subunit [Wolinella succinogenes DSM 1740] gi|34484145|emb|CAE11141.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Wolinella succinogenes] Length = 1089 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSV-GLVLAHLKPDLAFN 56 SG A L+ G+KV I+ + + ++ K D Sbjct: 29 SGTQAAKTLKSLGYKVVLINSNPATIMTDPEFADRTYIEPITEEIVQDIIRKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112 + G + + + + G A+ + R + + + Sbjct: 89 TMGGQTALNIAMSMHNKGMLEDVVFLGAKPEAIKKGEDRQAFKEAMQKIGMDLPLSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M + I P +I+ + G V + + ++LIE+ + Sbjct: 149 NMEEAMIAAKEIGFPLIIRASFTLAGGGSGVAYNIEEFKQLAQNGLEISPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSIHPETGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 42.2 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 92/262 (35%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ KPD ++H + L + + ++ D Sbjct: 619 FEPIDF-EHVRSVIEREKPDGV--IVHFGGQTPLKLAKNLTRIGANIIGTSAKVIDVAED 675 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + V G+ + + + I P +++P + ++ + + Sbjct: 676 REKFSRFVEENGLKQPENGTAFTKEEAHEIANRIGFPVLVRPSYVLGGRAMRIVYNQEEL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 L + ++ S ++ +LI++++D IEL + D + + Sbjct: 736 KLYMEEAVSVSNESPVLIDKFLDNAIELDVDAISDGQKVYVAGIMQHIEEAGIHSG---D 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + I + KE++ L A+G +G+ + + ++ +E+N + T Sbjct: 793 SACSLPAVSIEPALLKELEHLTAKIALALGVKGLMNTQYAI--HKGMIYLIEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPFVSKATGIPLAKVATR 868 >gi|220907091|ref|YP_002482402.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC 7425] gi|219863702|gb|ACL44041.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC 7425] Length = 1107 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 103/304 (33%), Gaps = 34/304 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL D G++V I D D + V V+A +PD Sbjct: 29 SGTQACKALRDEGYEVVLINSNPATIMTDPDTADRTYIEPLTPELVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + +LE + + + A + D+ K+V+ GV VCPS Sbjct: 89 TMGGQTALNLAVTLAKTGVLEKYGVELIGAKLPAIEKAEDRKLFKEVMEEIGVGVCPSGL 148 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + +Q + P +I+P G + + + Q+LIE Sbjct: 149 AENMAEAKAIAQRIGVYPLIIRPAFTLGGTGGGIAYNQEEFEEIAQSGLEASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + ++ + T + Y+ ++ Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENLDPMG-IHTGDSITVAPAQTLTDKEYQRLRD 267 Query: 230 LAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + +AIG G S F +P + V +E+N P ++ S + G+ + Sbjct: 268 ASIKIIRAIGVETGGSNIQFAVNPENGDVIVIEMN--PRVSRSS--ALASKATGFPIAKF 323 Query: 289 LLWM 292 + Sbjct: 324 AAKL 327 Score = 41.8 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 57/172 (33%), Gaps = 7/172 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 IS P V++P + ++ D + + + +LI+++++ + Sbjct: 736 ARRISYPVVVRPSYVLGGRAMEIVYSDAELERYMTYAVQVEPDHPILIDKFLEN-AIEVD 794 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V A + + +S ++ + + + ++ A + + Sbjct: 795 VDAIADGQGNVVIGGVMEHIEQAGIHSGDSACTLPAQSLSNQVLDTIRTWAIALAKQLEV 854 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ F +V+ LE N + T P ++ G ++ + Sbjct: 855 VGLMNLQFAV--QGEQVYILEANPRASRT----VPFVSKAIGLPLAQIAARL 900 >gi|119513297|ref|ZP_01632337.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena CCY9414] gi|119462060|gb|EAW43057.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena CCY9414] Length = 1088 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPDFVEKVIAKERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ + + + A + D+ + ++ GV VCPS Sbjct: 89 TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEKAEDRKLFNEAMAKIGVAVCPSGT 148 Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + + P +I+P G + + + Q+LI+ Sbjct: 149 ASSLAESKEIAAKIGTYPLIIRPAFTMGGTGGGIAYNKEEFEEMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVTGDVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 93/299 (31%), Gaps = 36/299 (12%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ AGF+ ++ V ++ KP G Sbjct: 586 ALKKAGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVINIIEAEKPVGVIIQFGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSGIL-----ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116 V L P + I + ++ ++ R +++++ + P+ Sbjct: 646 LKLAVPLEEFLKNHPSLPTKIWGTSPDSIDMAENRERFEKILNELNIAQPPNGIARSYDD 705 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P V++P + ++ D + + + +LI+++++ Sbjct: 706 ALIVAKRIGYPVVVRPSYVLGGRAMEIVYSDTDLERYMTFAVLVEPEHPILIDKFLEN-A 764 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V A + + +S ++ + + + ++++ Q Sbjct: 765 IEVDVDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLSPAVLQQIRTWTVQLAQ 824 Query: 237 AIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ G+ F +V+ LE N + T P ++ G ++ + Sbjct: 825 ALSVVGLMNIQFAVVGAQGYSPQVYILEANPRASRT----VPFVSKSTGIPLAKVASLI 879 >gi|283781145|ref|YP_003371900.1| GCN5-like N-acetyltransferase [Pirellula staleyi DSM 6068] gi|283439598|gb|ADB18040.1| GCN5-related N-acetyltransferase [Pirellula staleyi DSM 6068] Length = 508 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 115/303 (37%), Gaps = 27/303 (8%) Query: 22 CASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75 A AG+ V + +L + D+ FN++ G+ L ++E Sbjct: 30 VEQACRAAGWPVEVCETSLDFTRVDQLLTSGRFDVVFNLVESLAGSDQLAELFVRLVEAR 89 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 +P T S A LS DK+ +KQ++ +P ++ + PP+++K + Sbjct: 90 GVPITGSSARALQLSNDKIATKQLLREKQLPTAAW-CTLDDAGNASAELRPPWIVKAIGQ 148 Query: 136 GSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GVMG 183 +S V+ + +++ + G EQ++DG E V+ Sbjct: 149 HASLGLDDSCVVLGPAADVAAAIRAQAARLGTPCFAEQFIDGREFNVSLLATEQGVEVLP 208 Query: 184 DASLDVTEIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 A + + K Y+ K+ + + +++L+ A ++ Sbjct: 209 IAEILFVDFPAGKPRIVGYDAKWSADSAEFTGTPRTFDFPASDGPLLALLEKLSREAWKS 268 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + G +R DF D + + LE+N P ++P + F AA +G S E + +V A Sbjct: 269 LQLSGYARIDFRVDQQA-QPLLLEVNTNPCLSPDAGFAAAAAQSGRSLEEAIQQIV-LAP 326 Query: 298 CLR 300 R Sbjct: 327 LRR 329 >gi|329121679|ref|ZP_08250296.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965] gi|327468149|gb|EGF13635.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965] Length = 1142 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/286 (10%), Positives = 76/286 (26%), Gaps = 44/286 (15%) Query: 19 GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48 A ++ G + + + + Sbjct: 16 AIRVFRACKELGIRTVAVYSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKE 75 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +G E+ + I + + DK+ +++ +P+ Sbjct: 76 HNVDAVHPG-YGFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMI 134 Query: 109 PSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159 P + P +IK + GG G+ + + + + Sbjct: 135 PGTHGAVKSFDDVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLA 194 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + + V+ + ++GD ++ + K + LP Sbjct: 195 FGDDEVYAERCVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQKVIEMAPAWSLPL-- 252 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ K + A + + +FL D + +++E+N + Sbjct: 253 --ELRKRICDAAVKLMKNVKYLNAGTVEFLVDENKKDFYFIEVNPR 296 >gi|220917308|ref|YP_002492612.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219955162|gb|ACL65546.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1077 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + L+LA KPD+ Sbjct: 29 SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + L + + + A + D+ + +P Sbjct: 89 TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + ++ + + +L E+ Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + + Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LRIIREIGVETGGSNIQFGVHPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 31/285 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL AGF+ + D D S L L + ++H G Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P H Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHR 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + V+ D+ + L ++ ++ +LI+++ D E+ V+ Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++ + P + + E++R + + +G G Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLRPEHVAEIERQSVAMARELGVIG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + F ++ LE+N + T P + G + Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864 >gi|197122523|ref|YP_002134474.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K] gi|196172372|gb|ACG73345.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp. K] Length = 1077 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + L+LA KPD+ Sbjct: 29 SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + L + + + A + D+ + +P Sbjct: 89 TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + ++ + + +L E+ Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + + Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LRIIREIGVETGGSNIQFGVHPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 31/285 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL AGF+ + D D S L L + ++H G Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P H Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHR 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + V+ D+ + L ++ ++ +LI+++ D E+ V+ Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++ + P + E++R + + +G G Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLSPAHVAEIERQSVAMARELGVIG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + F ++ LE+N + T P + G + Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864 >gi|332976369|gb|EGK13221.1| carbamoyl-phosphate synthase, large subunit [Desmospora sp. 8437] Length = 1073 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G +L + G +V + D D + V+ +PD Sbjct: 30 GTQACQSLREEGVEVVLVNSNPATIMTDTDVADKVYIEPMTPEFLTQVIRKERPDGLLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP + Sbjct: 90 LGGQTGLNLAVELAEAGVLEREGVRLLGTDLHAITCAEDREQFRSLMREIGEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + + + + + + Q LIEQ Sbjct: 150 HSVEEAVRFAERTGYPVIVRPAYTLGGTGGGIAETEAELRETVENGIHHSPIGQCLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + ++ ++ A Sbjct: 210 IAG-FKEVEYEVMRDAADHAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDREHQMLRNSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ RG F DP S + + +E+N P ++ S + G + Sbjct: 269 LKMIRALDIRGGCNVQFALDPDSFQYYVIEVN--PRVSRSS--ALASKATGVPIARISAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/292 (10%), Positives = 86/292 (29%), Gaps = 30/292 (10%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 A+ AG + I+ V ++ +P G Sbjct: 578 AIQAIRAAGMEAVIINNNPETVSTDFNISDRLYFEPLYTEDVLNIIEKERPLGVVVQFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + T + A K P ++ + + Sbjct: 638 QTSLNLARDLKEHGVPLLGTDLEAIDRAEDRKKFERLLGEVGIPQPPGTAVTSGEAALSA 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ + + + ++ N +LI++Y+ G E+ Sbjct: 698 ARELGFPVLVRPSYVLGGRAMEIVYSESELKNYMDEAVKLNPSHPVLIDRYLQGREIEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + + + + + +A+ Sbjct: 758 AISDGDRVLIPGIMEHIERAG---VHSGDSIAVYPPPSLTAEQKQRLVNMTTELARALQI 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 RG+ F+ +++ LE+N + T P ++ G + Sbjct: 815 RGLINIQFVL--HDEEIYVLEVNPRSSRT----VPFLSKVTGIPMARAATRI 860 >gi|15805695|ref|NP_294391.1| carbamoyl phosphate synthase large subunit [Deinococcus radiodurans R1] gi|22095540|sp|Q9RWK0|CARB_DEIRA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|6458373|gb|AAF10248.1|AE001924_1 carbamoyl-phosphate synthase, large subunit [Deinococcus radiodurans R1] Length = 1024 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 94/298 (31%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ KPD Sbjct: 29 SGTQALKALKNEGYRVILVNSNPATIMTDPELADATYLEPLTPEFVEKIIEKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + ++ LE + +G+ A D+ + + GV Sbjct: 89 TLGGQTALNLAMELHERGSLEKYGVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ Q I P VI+P G + + + +L+E+ Sbjct: 149 VHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLRDSPVTSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + ++ + + Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDQS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVATGGSNIQFAVNPDNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 >gi|296454536|ref|YP_003661679.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum subsp. longum JDM301] gi|296183967|gb|ADH00849.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum subsp. longum JDM301] Length = 1127 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|118602846|ref|YP_904061.1| carbamoyl-phosphate synthase large subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567785|gb|ABL02590.1| carbamoyl-phosphate synthase large subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1069 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +AL + G++V I D R++ ++ KPD Sbjct: 29 SGAQACTALREEGYRVILINSNPATIMTDPKMADATYIEPIEWRTIEKIIEKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ ++ + G+ + + Sbjct: 89 TMGGQTALNCALDLERHGVLEKHGVEMIGAKKEAIDKAEDRDLFREAMLKIGLDMPKAAV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + ++LLIE+ Sbjct: 149 AHNIEQAHTVQKTVGFPTIIRPSFTMGGSGGGIAYNKEEFVEICERGLDLSPTNELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SILGWKEFEMEVVRDSKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVDTGGSNVQFALNPKNGRLTIIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 35/291 (12%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D+ V ++ PD ++H Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDVLTIVDIENPDGI--IVHYGGQ 644 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQ 121 + LE + A L+ D+ R +++ + + D Sbjct: 645 TPLKLADALEKNGANIIGTTPDAIDLAEDRERFSKMLQELELKQPLNGTARSLEQAQDIA 704 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180 I P +++P + ++ S+ + + ++ +L++ ++D IE+ Sbjct: 705 DAIGFPLIVRPSYVLGGRAMEIVYDKDSLEHYMYTAVQVSNNSPVLLDSFLDHAIEVDID 764 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + ++ + P + D+ E++ + + Sbjct: 765 AICDGEDVVIGGIMQHIEQAGIHSG---DSACSLPPYSLASDVLDEMRIQVIAMAKKLNV 821 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ + + +++ +E+N + T P ++ G + Sbjct: 822 IGLMNTQLAY--QDGEIYIIEVNPRASRT----VPFVSKAIGVPLARIAAR 866 >gi|1857220|gb|AAB49636.1| vancomycin resistance protein [Enterococcus faecalis] Length = 261 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 43/263 (16%) Query: 29 AGFKVSQIDVDRSVGLVLAHL----------------------------------KPDLA 54 F I + + L + D+A Sbjct: 1 EKFDPHYIGITKRGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVA 60 Query: 55 FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 F VLHG GEDG +Q + EL IPY I +SA MDK + + + G+ V +++ Sbjct: 61 FPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMID 120 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + ++ P +KP + GSS G+ + + + + ++ + ++LIEQ + G Sbjct: 121 KGDKPETGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILIEQAISG 178 Query: 175 IELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 E+ C VMG+ + E + S N+ +PA IP+ V Sbjct: 179 CEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVGERNRV 238 Query: 228 QRLAFLAHQAIGCRGISRSDFLF 250 Q A ++A+GCRG++R D Sbjct: 239 QETAKKVYRALGCRGLARVDLFL 261 >gi|197123994|ref|YP_002135945.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K] gi|196173843|gb|ACG74816.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp. K] Length = 1067 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + ++ ++ +PD Sbjct: 29 SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + +L+ + + A D+ K+ ++ G+ S + Sbjct: 89 NLGGQTGLNLSSELARKGVLDQYGVRVIGVNLDAIRRGEDRETFKETMTRLGIETARSEI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + + Q+L+E+ Sbjct: 149 ATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + +I V + ++ + I ++ +Q Sbjct: 209 SVLGWE-ELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTISPELQARLQDQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ AI G + F DP + +V +EIN + T S + G+ L+ Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 SML 325 Score = 39.9 bits (91), Expect = 0.53, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 82/272 (30%), Gaps = 18/272 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + +PD G + Q + I T + Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLNIARQLEEAGVRILGTSPETID 663 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + P +++P G+ V+ Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVVHD 723 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ + L +++++ DA D T+ VP + Sbjct: 724 EEMLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTDAFVPAVMEHIELAGV 780 Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263 S +S + P + + ++ +G G+ + V+ LE N Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--AGGTVYVLEANPR 838 Query: 264 ---VQPGMTPVSIFPEMAAYA----GYSFREL 288 P ++ V P A G ++L Sbjct: 839 ASRTVPLVSKVCDLPMARIAAQVMLGMRLKDL 870 >gi|332686643|ref|YP_004456417.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius ATCC 35311] gi|332370652|dbj|BAK21608.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius ATCC 35311] Length = 1061 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQAAGYEAIIMNNNPETVSTDFSISDKLYFEPLTLEDVLNVIELEKPTGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A D + P + + + Sbjct: 639 AINLAAALDQQGIKILGTTVKDLDRAEDRDMFEQALKILEIPQPPGNTAISEAEAISIAG 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + +L+++Y+ G E + Sbjct: 699 KIGYPVLLRPSYVLGGRAMEIVENQADLEDYMKYAVKASQEHPVLVDRYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + ++ + C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQILSKKIKQTIETYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ V+ +E+N + T P ++ G +L ++ Sbjct: 816 IMNIQFVIHHDD--VYVIEVNPRASRT----VPFLSKITGIKMAQLATRVI 860 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDREIADKVYIEPITLEFVSQILRKEQPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAIELASSGILDELKIELLGTKLSAIDQAEDRDLFKQLMEKLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + ++ + + + Q LIE+ Sbjct: 150 HTVEEAVSFTNKIGYPVIVRPAFTLGGTGGGMCDNEEELRAITVNGLKLSPATQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSSDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDQEYQLLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPSIFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|254458203|ref|ZP_05071629.1| pyruvate carboxylase [Campylobacterales bacterium GD 1] gi|207085039|gb|EDZ62325.1| pyruvate carboxylase [Campylobacterales bacterium GD 1] Length = 359 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 92/286 (32%), Gaps = 40/286 (13%) Query: 29 AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88 + ID+ + D +G E E E+ + Sbjct: 62 LKYD-KIIDIAK-------KTNCDAIHPG-YGFLSESAEFAQACEDNELIFIGPKPKHIE 112 Query: 89 LSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L DKM SK + GVPV I + I P +IK GG G+ ++ Sbjct: 113 LFGDKMASKVAMKKIGVPVLEGTDTPITNMQEGEKIAQEIGYPVIIKAAFGGGGRGMRIV 172 Query: 145 KKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199 + GD + + + + V+ D+ +V + Sbjct: 173 HFADEFSNMFDSATNESIKYFGKGDVFIEKYVQNPRHIEIQVVADSHGNVVHLGERDCSI 232 Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 + + ++ +++ +++ A + +G + +FL D V++ Sbjct: 233 Q----RRHQKVIEITPSPLLNDEVRQKLCKISVDAMKELGYESVGTVEFLVDEKDN-VYF 287 Query: 260 LEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 +E+N P +T + +G +++ M+E A+ + Sbjct: 288 IEMNTRVQVEHP-VTEI--------VSGV---DIIQRMIEIAAGDK 321 >gi|154685968|ref|YP_001421129.1| carbamoyl phosphate synthase large subunit [Bacillus amyloliquefaciens FZB42] gi|154351819|gb|ABS73898.1| PyrAB [Bacillus amyloliquefaciens FZB42] Length = 1071 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +E+ T + A D R+ + VP I Sbjct: 90 LGGQTGLNLAVELSELGVLEECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + Q L+E+ Sbjct: 150 RTLQEAEEFVGRIGFPVIVRPAYTLGGTGGGICSDEAELKEIVENGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDSRDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V ++ +P+ G Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + P+ + + + Sbjct: 640 INLAEELSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVNEAVKIAAS 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + DI K++++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ LE+N + T P ++ L ++ Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITKIPMANLATKVI 860 >gi|126701215|ref|YP_001090112.1| carbamoyl phosphate synthase large subunit [Clostridium difficile 630] gi|255094544|ref|ZP_05324022.1| carbamoyl phosphate synthase large subunit [Clostridium difficile CIP 107932] gi|260685109|ref|YP_003216394.1| carbamoyl phosphate synthase large subunit [Clostridium difficile CD196] gi|260688767|ref|YP_003219901.1| carbamoyl phosphate synthase large subunit [Clostridium difficile R20291] gi|306521869|ref|ZP_07408216.1| carbamoyl phosphate synthase large subunit [Clostridium difficile QCD-32g58] gi|115252652|emb|CAJ70495.1| Carbamoyl-phosphate synthase large chain 1 [Clostridium difficile] gi|260211272|emb|CBA66826.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Clostridium difficile CD196] gi|260214784|emb|CBE07504.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Clostridium difficile R20291] Length = 1068 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L G + + D D V ++ KP+ G Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P V++P G + ++ + L + Q+L+E+ Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + + Y+ +++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|56478162|ref|YP_159751.1| carbamoyl phosphate synthase large subunit [Aromatoleum aromaticum EbN1] gi|56314205|emb|CAI08850.1| Carbamoyl-phosphate synthase large chain [Aromatoleum aromaticum EbN1] Length = 1075 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVESIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+++ K ++ G+ S Sbjct: 89 TMGGQTALNCALDLARNGVLEKYGVELIGASRDAIDKAEDRLKFKDAMTKIGLGSARSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFDEICKRGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPSQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 94/291 (32%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L + + ++H G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDILEIVHVEKPVGVIVQFGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ +A ++ + P + + Sbjct: 642 LKRAQALEDNGVPIIGTSPDMIDAAEDRERFQKLLNDLGLKQPPNRTARTPEAAVRLAAE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + E++R +A+ G Sbjct: 762 SDGRQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAKLQDELRRQTEAMARALNVCG 818 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 819 LMNVQFAIQGDGDEATVYVLEVNPRASRT----VPFVSKACGLQLAKIAAR 865 >gi|83859440|ref|ZP_00952961.1| carbamoyl-phosphate synthase large subunit [Oceanicaulis alexandrii HTCC2633] gi|83852887|gb|EAP90740.1| carbamoyl-phosphate synthase large subunit [Oceanicaulis alexandrii HTCC2633] Length = 1086 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D V V+ +PD Sbjct: 29 SGVQAVKALKEEGYRVILVNSNPATIMTDPDLADATYVEPITPEMVAKVIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+L + + + ++ R + + S G+ S Sbjct: 89 TMGGQTALNCALELDKRGVLDLFNVEMIGAKADVIDKAENRERFRNAMDSIGLESPKSRT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P VI+P G + + + + ++LIE+ Sbjct: 149 VHTMAEAEVVLEELGLPAVIRPSFTMGGTGGGIAYNVEEFREIVTSGLYNSPVTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRSAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%) Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P V++P G+ +++ +S + ++ + LL+++Y Sbjct: 706 HDEAEARQMAEELGFPLVLRPSHVLGGRGMEIVRDIESFSRYIREAVHVSGKAPLLLDRY 765 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + V + I+ +S ++ + P + E++R Sbjct: 766 LS-DASEVDVDAVCDGENVWISGIMEHIEE-AGVHSGDSACSLPPHSLSDQTVSELRRQT 823 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +AI +G+ + V+ +E+N + T P +A G Sbjct: 824 KALAKAIDVKGLMNVQYAV--KDGVVYLIEVNPRASRT----VPFVAKTIG 868 >gi|284048652|ref|YP_003398991.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus fermentans DSM 20731] gi|283952873|gb|ADB47676.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus fermentans DSM 20731] Length = 1068 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 91/288 (31%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+D G++ + D D V V+ KP+ G Sbjct: 580 ALKDLGYETIIVNNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREKPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I + + A ++ P ++ + + + Sbjct: 640 INLAGPLHECGVKILGSSVDSIDRAEDRERFDELLTSVGIPRPKGHTVFDIDGALKAAND 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D+ + + + + +L++ Y+ G E+ + Sbjct: 700 VGYPVMVRPSYVLGGRAMEIVYNDEELKYYMNNAVKASQEHPVLVDHYLMGTEVEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + +++ + G+ Sbjct: 760 DGKDVLMPGIMEHIERAG---VHSGDSIAVYPPRTLSEHVIEQIIDYTTKLALGLEVHGM 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ K++ +E+N + T P ++ G S ++ Sbjct: 817 INIQYIV--RDDKLYVIEVNPRSSRT----VPFLSKVTGISMVDVATK 858 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++A +PD Sbjct: 29 SGTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLDVEFLEAIIAKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + I + + D+ + +P Sbjct: 89 TLGGQIGLNLAIELDKKGILKKYNVQLLGTQIASIMKAEDRELFKETMEKLHQPIPQSTI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +++P G + + + ++ Q LIE+ Sbjct: 149 VESVDAAKEFAQKVGFPLIVRPAYTLGGTGGGIAHNMDQLDDITTKGLMYSLIGQALIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + + ++ ++ Sbjct: 209 SVAGWKEIEYEVVRDHEDNCITVCNMENIDPVGVHTGDSIVVAPCQTLTDREVQM-LRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G + +P S + +E+N P ++ S + GY Sbjct: 268 AIDIVRELGVEGACNVQYALNPDSEEYIVIEVN--PRVSRSS--ALASKATGYP 317 >gi|229544083|ref|ZP_04433142.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans 36D1] gi|229325222|gb|EEN90898.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans 36D1] Length = 1067 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 35/297 (11%), Positives = 84/297 (28%), Gaps = 32/297 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S A AL+ G++ ++ + + ++ + F Sbjct: 577 SVHAVM-ALKQLGYETIVVNNNPETVSTDFSMADKLYFDPLRPEDLLHIIEKEQVAGVFT 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + E +++ T+ + + + Sbjct: 636 QFGGQTAINVASSLEAEGVKLFGTNVEQIDQLEDRNLFYKLLDELGIPHIKGHTAYDAEE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGI 175 +S P +++P + + + + + L+I+QY+ G Sbjct: 696 LKRGAKDLSFPVLVRPSYVIGGQSMFIFYHEDELNAYADALKYASEKSWPLMIDQYLPGT 755 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 E + D + + +S + P + + + + R A Sbjct: 756 ECELDCICDGEKVLIPGIFEHIEKAG---VHSGDSMAVYPPQHLSPSVQETLIRYAEKIC 812 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +GI+ FL V+ LE+N + T P ++ G +L + + Sbjct: 813 LKGKIKGIANIQFLI--YEGTVYVLEVNPRASRT----VPILSKVTGIPMIDLAIAI 863 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 98/300 (32%), Gaps = 32/300 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + S+ +L +PD Sbjct: 30 GTQSCLALKEEGIEVVLVNSNPATIMTDEEMADRIYFDPLTVESIEQILQKERPDGIIGT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111 L G G + VQ L+ + + + + D+ + +Q++ +P + Sbjct: 90 LGGQTGLNLTVQLYEAGILDKYGVQLLGTPVDSIQKGEDREKFRQLMLDIGEPIPPSKIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +I+P G D+ + L + + Q+L+E+ Sbjct: 150 ENMEDGLAFAKKIGYPVIIRPAYTLGGSGGGFAANDEELREVLQRGLDLSPIHQVLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ + Sbjct: 210 IKGW-KEIEYEVVRDANDTCIIVCNMENIDPVGVHTGDSIVVAPSQTLSDVQYQLLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + +E+N P ++ S + GY + Sbjct: 269 LKVIRALGVIGGCNIQFALDPHSDQYNIIEVN--PRVSRSS--ALASKATGYPIARIATK 324 >gi|315080677|gb|EFT52653.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL078PA1] Length = 1068 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S EL ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAELATRII 866 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|309782464|ref|ZP_07677188.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp. 5_7_47FAA] gi|308918801|gb|EFP64474.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp. 5_7_47FAA] Length = 1081 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHSLGLRQPPNRTARAEDEALKLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGVPLAKVAAR 875 >gi|314927795|gb|EFS91626.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL044PA1] gi|328907259|gb|EGG27025.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium sp. P08] Length = 1068 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR + +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + L+EQ Sbjct: 149 VHTIDEAVKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRALGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + + Sbjct: 639 AINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP S + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866 >gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus 5a2] gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus 5a2] Length = 475 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 5/141 (3%) Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKI 219 + +L+E ++ G E +C V+ +A + + + + Y KY P + Sbjct: 306 ESVLVESFITGREFSCIVLQEAGNEPVALPPTEMLKGDLHFDYRAKYLPGLVRKQTPMTL 365 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 PL ++ +++ + +R D +F ++ + N GM P S AA Sbjct: 366 PLAQLNTIKEACVQLFESLNFQVYARIDGIFS-SDNSIYLNDPNTTAGMNPSSFLFHQAA 424 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G + +LL +++ ++ R Sbjct: 425 EIGLNPSQLLTFLIRNSLAAR 445 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 69/224 (30%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45 + + +GG S ERE+S + G+ L+ F+ I VD + Sbjct: 7 VGIFLGGSSREREISFAGGRTVYDNLDKGLFEPIPIFVDSFNNFIQLDWRYLYQGSIRDF 66 Query: 46 ------------------LAHLKPD-----------------------LAFNVLHGNFGE 64 L +L PD AF LHG GE Sbjct: 67 YPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGMIDFAFLSLHGPCGE 126 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---- 120 DG +Q +LE +IPY+ SGIL +A+ +DK+ K+ + G V P +++R T Sbjct: 127 DGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYSIIDRNTWQKTTNK 186 Query: 121 -------QHLISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLL 155 H + P VIK + GSS+G+ + K ++ + Sbjct: 187 DALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKDFEAFTKAIH 230 >gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406] gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406] Length = 897 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 +DF+ Y KY S + P IP + + ++ + + +R D P + Sbjct: 342 NDFFDYRSKYLPGMSRKITPIDIPGEQVELIRSECCRLYSTLQFNVYARIDGFISPE-GE 400 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 VF + N GM P S F AA G + + L +++ + R Sbjct: 401 VFLNDPNTTSGMMPSSFFFHQAAEIGLNPSQFLTYIIRTSIQER 444 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 78/218 (35%), Gaps = 69/218 (31%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + ++ GG S ERE+S + G+ L F I VD Sbjct: 3 IGIIFGGQSREREISFAGGRTVYDNLNKDIFTTVPIFVDSLGQFILLDWQYIYKGTIRDF 62 Query: 40 ------------------RSVGLVLAHLK-------------------PDLAFNVLHGNF 62 S+G + + D AF LHG + Sbjct: 63 YPPFEFLPKSIHGFQVYVESLGDLPKEERDAMIQKVGRKIEPSDLKELIDFAFLALHGPY 122 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118 GEDG +Q +L+ IPY+ SGIL SA+ ++K K++V+ + + T Sbjct: 123 GEDGAIQGMLDWNNIPYSGSGILPSAIGINKYIQKKLVAQASFNGPNYVTYKKSTWLKGA 182 Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 + + P+V+K GSS+GI VI + Sbjct: 183 DTKALLAHFESSVGFPFVVKAPSQGSSIGITVISERNE 220 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 54/333 (16%), Positives = 103/333 (30%), Gaps = 67/333 (20%) Query: 15 SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74 S+SS + ++A++ D L+ L D F LHG GEDG +Q LE Sbjct: 564 SISS-RYVSNAIK---------DPKEISYKELSEL-VDGVFIALHGRPGEDGSMQKELEK 612 Query: 75 LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------IS 125 ++PY SGI +S ++++K + +++ G+ V +V + Sbjct: 613 YQLPYNGSGIQSSQITINKFETNRILREHGISVANHRMVYKQEWLDAGEKLLSEIESGFI 672 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P + KP + K++ + Q + V G Sbjct: 673 YPIIAKPSDD-GCSSAVKKIKNRDELRAYTRLMFGEEAIQGSVSSSVLG-LKYNEEFPQK 730 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV------------------ 227 + E V K + + L + + +I++ Sbjct: 731 DYFLIEDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLATGDVLSLEEKFLAG 790 Query: 228 ------------------------QRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWL 260 + + + +G +R D + + Sbjct: 791 EGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETIII 850 Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 E+N PGMTP + A GY + + ++ Sbjct: 851 EVNSLPGMTPATCIFHQTAINGYKPYDFIDNIL 883 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGL 44 +AV+MGG SSER +S+ SG+ L + ++ + + S Sbjct: 478 IAVVMGGYSSERHISVESGRNIFEKLSSSTKYQPLPVFLTGSDEQ 522 >gi|315282839|ref|ZP_07871158.1| carbamoyl-phosphate synthase, large subunit [Listeria marthii FSL S4-120] gi|313613509|gb|EFR87334.1| carbamoyl-phosphate synthase, large subunit [Listeria marthii FSL S4-120] Length = 1070 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPDSDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.2 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILEIPQPAGKTATSVDEAIKVATA 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|307730496|ref|YP_003907720.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp. CCGE1003] gi|307585031|gb|ADN58429.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. CCGE1003] Length = 1084 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + Q P VI+P G + + + + Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|237811773|ref|YP_002896224.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei MSHR346] gi|237506191|gb|ACQ98509.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei MSHR346] Length = 1084 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAGEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|212639629|ref|YP_002316149.1| carbamoyl phosphate synthase large subunit [Anoxybacillus flavithermus WK1] gi|212561109|gb|ACJ34164.1| Carbamoylphosphate synthase large subunit [Anoxybacillus flavithermus WK1] Length = 1074 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V V+ +PD Sbjct: 41 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVSRVIRKERPDAILPT 100 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP + Sbjct: 101 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 160 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + Q L+E+ Sbjct: 161 HSLQEAYAFVSQIGYPVIVRPAFTLGGTGGGICTNEEELADIVSSGLKMSPVHQCLLEKS 220 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ + Sbjct: 221 IAG-YKEIEYEVMRDSKDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 279 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 280 LRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 335 Query: 292 M 292 + Sbjct: 336 I 336 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V V+ +P G Sbjct: 589 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPIGVIVQFGGQTA 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T L A + DK P + + Sbjct: 649 INLAAELAARGVRILGTSLEDLDRAENRDKFERTLAQLGIPQPRGKTAFSVEEAVHIAKD 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + N +LI++Y+ G E+ + Sbjct: 709 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAIS 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + D+ +++ + + G+ Sbjct: 769 DGEDVFIPGIMEHIERAG---VHSGDSIAVYPPQTLTKDMKQQIVDYTIALAKGLRIVGL 825 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 F+ V+ LE+N P ++ ++ P Sbjct: 826 LNIQFVL--YDGDVYVLEVNPRSSRTVPFLSKITNVPMA 862 >gi|53718990|ref|YP_107976.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei K96243] gi|53725563|ref|YP_102535.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei ATCC 23344] gi|67639732|ref|ZP_00438569.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei GB8 horse 4] gi|76812013|ref|YP_333014.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 1710b] gi|121600186|ref|YP_992618.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei SAVP1] gi|124385677|ref|YP_001026580.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei NCTC 10229] gi|126449005|ref|YP_001080135.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei NCTC 10247] gi|126454406|ref|YP_001065780.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 1106a] gi|167002794|ref|ZP_02268584.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei PRL-20] gi|167719060|ref|ZP_02402296.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei DM98] gi|167738058|ref|ZP_02410832.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 14] gi|167815242|ref|ZP_02446922.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 91] gi|167823651|ref|ZP_02455122.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 9] gi|167845195|ref|ZP_02470703.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei B7210] gi|167893746|ref|ZP_02481148.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 7894] gi|167910438|ref|ZP_02497529.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 112] gi|217423377|ref|ZP_03454878.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 576] gi|226196139|ref|ZP_03791724.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei Pakistan 9] gi|242314456|ref|ZP_04813472.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1106b] gi|254178681|ref|ZP_04885336.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei ATCC 10399] gi|254188374|ref|ZP_04894885.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei Pasteur 52237] gi|254197959|ref|ZP_04904381.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei S13] gi|254199446|ref|ZP_04905812.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei FMH] gi|254205759|ref|ZP_04912111.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei JHU] gi|254259221|ref|ZP_04950275.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1710a] gi|254298041|ref|ZP_04965494.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 406e] gi|254358840|ref|ZP_04975113.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei 2002721280] gi|52209404|emb|CAH35349.1| carbamoyl-phosphate synthase large chain [Burkholderia pseudomallei K96243] gi|52428986|gb|AAU49579.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei ATCC 23344] gi|76581466|gb|ABA50941.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1710b] gi|121228996|gb|ABM51514.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei SAVP1] gi|124293697|gb|ABN02966.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei NCTC 10229] gi|126228048|gb|ABN91588.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1106a] gi|126241875|gb|ABO04968.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei NCTC 10247] gi|147749042|gb|EDK56116.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei FMH] gi|147753202|gb|EDK60267.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei JHU] gi|148027967|gb|EDK85988.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei 2002721280] gi|157807717|gb|EDO84887.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 406e] gi|157936053|gb|EDO91723.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei Pasteur 52237] gi|160699720|gb|EDP89690.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei ATCC 10399] gi|169654700|gb|EDS87393.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei S13] gi|217393235|gb|EEC33256.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 576] gi|225931725|gb|EEH27727.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei Pakistan 9] gi|238520331|gb|EEP83792.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei GB8 horse 4] gi|242137695|gb|EES24097.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1106b] gi|243061555|gb|EES43741.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei PRL-20] gi|254217910|gb|EET07294.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1710a] Length = 1084 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|296158200|ref|ZP_06841032.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. Ch1-1] gi|295891536|gb|EFG71322.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. Ch1-1] Length = 1084 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE ++ + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + Q P VI+P G + + + Sbjct: 149 AHSMEEALQVQAEIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMARA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|312865223|ref|ZP_07725451.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei F0415] gi|311099334|gb|EFQ57550.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei F0415] Length = 1059 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 AL+ AG++ ++ + V V+ +P G Sbjct: 579 KALQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + + S Sbjct: 639 AINLADPLSKAGVKILGTQVADLDRAEDRDLFEQALQDLDIPQPPGHTATNEEEAVASAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 QIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYLVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQEIIDTITDYTKRLAIGLNCYG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--HDDKVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESQIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + +D I P +++P G + + + + Q LIE+ Sbjct: 150 NTVQEALDFAAEIGYPVIVRPAFTLGGTGGGMCANKEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|291532667|emb|CBL05780.1| carbamoyl-phosphate synthase large subunit [Megamonas hypermegale ART12/1] Length = 1073 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 103/301 (34%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + +LA +PD Sbjct: 20 GTQACRALKEEGLEVVLVNSNPATIMTDKDIADRVYIEPLTVEFLDEILAKERPDGLLAT 79 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V+ LE + + + A + D+ + +P + Sbjct: 80 LGGQAGLNLAVKLSEAGLLEKYNVELLGTSLEAIERAEDRELFKETMQKLGEPIPESTIV 139 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + +++ ++ Q+LIE+ Sbjct: 140 DDVASAVDFANQIGYPIIVRPAYTLGGTGGGIAENEEELIEIVIRGLKYSMIGQVLIERS 199 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + I V + ++ + + Y+ ++ + Sbjct: 200 VAGW-KEVEYEVMRDSNDNCIVVCNMENLDPVGVHTGDSIVVAPSQTLTDHEYQMLRSAS 258 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + F D S + + +E+N P ++ S + GY ++ Sbjct: 259 LRIIRELGIEGGCNAQFALDTKSNQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 314 Query: 292 M 292 + Sbjct: 315 I 315 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 85/288 (29%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I D+ V ++ +P+ G Sbjct: 572 ALRKMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKEQPEGVIVQFGGQTA 631 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +++ T + A ++ ++ P S+ + + Sbjct: 632 INLAASLKAAGVKVFGTSVDDIDRAEDRERFDEVLEQTNIARPQGASVTNVEDAVKAAEK 691 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +LI+ Y+ G E+ + Sbjct: 692 IGYPSMVRPSYVLGGRAMEIVYNEDELRDYMNRAVKVTPDHPVLIDHYMQGTEVEVDAIA 751 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + + + + +G+ Sbjct: 752 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSSKVIFTIIDYTKRLGLNLNVKGL 808 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ + V +E+N + T P ++ + EL Sbjct: 809 LNIQYVVVNDNVYV--IEVNPRSSRT----VPFLSKVTDINMVELATR 850 >gi|226227374|ref|YP_002761480.1| carbamoyl-phosphate synthase large chain [Gemmatimonas aurantiaca T-27] gi|259585681|sp|C1A4I5|CARB_GEMAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|226090565|dbj|BAH39010.1| carbamoyl-phosphate synthase large chain [Gemmatimonas aurantiaca T-27] Length = 1094 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 27/275 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V V+A +PD Sbjct: 29 SGTQAIKALREEGYEVILVNSNPATIMTDPEFADRTYVEPVTPEFVEKVIAKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L + A ++ D+ + + G+ Sbjct: 89 TMGGQTALNVALALHDSGVLAKYGCELIGANARAIRVAEDRKLFGEAMEKIGLRCPTGRT 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + + P +I+P G + + + + + +LIE+ Sbjct: 149 VTSLEEALSAVEETGFPAIIRPSFTLGGTGGGIAYNREEFETIVRRGLDLSPVHSVLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYELEVMRDCADNVVIVCSIENLDPMGVHTGDSITVAPAMTLTDREYQVMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + G F +P + ++ +E+N + Sbjct: 269 VAIIREIGVDAGGCNIQFAVNPTNGELIVIEMNPR 303 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 93/295 (31%), Gaps = 32/295 (10%) Query: 20 KACASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +A AL + G++ + D+ V ++ +P+ L Sbjct: 584 RAVL-ALREQGYETIMVNSNPETVSTDFDISDKLYFEPLSLEDVLEIVHREQPEGVIVQL 642 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T + +A + + P + + Sbjct: 643 GGQTPLKLTRPLEAAGVKILGTSPDAIDAAEDRRRFEAIARELGIEQPANGTATSVDEAV 702 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P +++P + ++ + S+ +++ + +L++++ D E Sbjct: 703 TIAQRIGFPVLVRPSYVLGGRAMEIVHDEVSLRDYFERAARVSEERPVLVDRFLEDAFEA 762 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + V + + ++ + P IP +++ + Sbjct: 763 DVDALSDGTDVVIGAVMEHIESAGIHSG---DSACILPPYLIPAAAVAQMKEHTIAFAKR 819 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +G G+ + + +V+ +E+N + T P ++ G S + + Sbjct: 820 LGVVGLINVQYAY--KDGQVYVIEVNPRASRTA----PFVSKAIGVSLPSVAARL 868 >gi|254428280|ref|ZP_05041987.1| urea carboxylase [Alcanivorax sp. DG881] gi|196194449|gb|EDX89408.1| urea carboxylase [Alcanivorax sp. DG881] Length = 1196 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + S+ + + +++ Sbjct: 147 ADTIGYPIMLKSTAGGGGIGMQVCENAASLDKAWDTVRRLSANNFSNDGVFIEKYIARAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + + PA D + ++ A +A+ Sbjct: 207 HIEVQVFGDGQGNAITLGERDCSAQRRHQKVLEETPAPNLPDAVRADLHATAKNLMEAVH 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F+ D S ++LE+N + G+T G +L+ WM++ Sbjct: 267 YRNAGTVEFILDQDSNAFYFLEVNTRLQVEHGVTE--------QVYGV---DLVEWMLQL 315 Query: 296 ASCL 299 A+ Sbjct: 316 AAGN 319 >gi|121534313|ref|ZP_01666137.1| carbamoyl-phosphate synthase, large subunit [Thermosinus carboxydivorans Nor1] gi|121307083|gb|EAX48001.1| carbamoyl-phosphate synthase, large subunit [Thermosinus carboxydivorans Nor1] Length = 1073 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 90/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + I D D V V+ +PD G Sbjct: 580 ALREMGVETVIINNNPETVSTDFDTADRLYFEPLTVEDVLHVVEKEQPDGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + I T + A K + P S+ + + Sbjct: 640 INLAVPLARAGVPILGTSVESIDCAEDRKKFDALVERLGIPRPAGVSVTNMAEAREKAGV 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + L ++ + +LI++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMQIVYNENELVEYLTKAVQASTDRPVLIDRYIQGTEVEVDAIA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ D + A+ RG Sbjct: 760 DGQDVLI----PGIMEHIERAGVHSGDSIAVYPARTLGPDEITRIVDYTKRLALALNVRG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ +V+ LE N + T P ++ G +L + Sbjct: 816 LINIQFVV--ADGQVYILEANPRSSRT----VPFLSKVTGIPMVQLATRI 859 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + ++A +PD Sbjct: 30 GTQACRALKEEGLEVVLVNSNPATIMTDDNIADRVYIEPLTPDFIEEIIAKERPDGLLPT 89 Query: 58 LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 L G G + L G +A+ + R + + Sbjct: 90 LGGQVGLNLAVTAAERGVLERYGVKLLGTPLAAIKKAEDRELFRATMQQIGQPVPESTIA 149 Query: 116 FTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 T+ I P +++P G ++ D + + + + Q+L+E+ Sbjct: 150 STLAQALRFAKDIGYPLIVRPAYTLGGTGGGIVHNDAELGEVVARGLKHSLIGQVLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + + Y+ ++ A Sbjct: 210 LAGW-KEIEYEVMRDGADNCIVVCNMENLDPVGIHTGDSIVVAPSQTLSDEEYQMLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LAIIRALGIEGGCNVQFALDPHSSRYYVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|86158154|ref|YP_464939.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774665|gb|ABC81502.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 1077 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + L+LA KPD+ Sbjct: 29 SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + L + + + A + D+ + +P Sbjct: 89 TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + ++ + + +L E+ Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + + Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LRIIREIGVETGGSNIQFGVHPQTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 31/285 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL AGF+ + D D S L L + ++H G Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVARR 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + V+ D+ + L ++ ++ +LI+++ D E+ V+ Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + ++ + P + + E++R + + +G G Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLRPEHVAEIERQSVAMARELGVIG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + F ++ LE+N + T P + G + Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864 >gi|17231301|ref|NP_487849.1| carbamoyl phosphate synthase large subunit [Nostoc sp. PCC 7120] gi|22095512|sp|Q8YQL2|CARB_ANASP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|17132943|dbj|BAB75508.1| carbamoyl phosphate synthetase large chain [Nostoc sp. PCC 7120] Length = 1104 Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ + + GV VCPS Sbjct: 89 TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + + Q+LI+ Sbjct: 149 ASSLDESKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 >gi|325922458|ref|ZP_08184225.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri ATCC 19865] gi|325547078|gb|EGD18165.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri ATCC 19865] Length = 1080 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D D ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTNGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.5 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V ++ KP G Sbjct: 588 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGLMEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F VF LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVDEAGDDVVFLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873 >gi|320546979|ref|ZP_08041280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus ATCC 9812] gi|320448381|gb|EFW89123.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus ATCC 9812] Length = 1059 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D + P + +++ H Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKALNIPQPPGQTATNEEEAVEAAH 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKVQETIADYTKRLAIGLNCFG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G AL++ G+ V ++ V +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D+ + + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDQFKQLMEDLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFADSIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|313682967|ref|YP_004060705.1| carbamoyl-phosphate synthase large subunit [Sulfuricurvum kujiense DSM 16994] gi|313155827|gb|ADR34505.1| carbamoyl-phosphate synthase large subunit [Sulfuricurvum kujiense DSM 16994] Length = 1082 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L++ G++V I+ + + + ++ K D Sbjct: 29 SGTQAVKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPIKPEIIAEIIKKEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE +E + + + V +P+ Sbjct: 89 TMGGQTALNAAMKMHELGMLEGIEFLGANPSAIKKGEDRQAFKECMVKIGMDLPISRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M + I P +I+ + G V L + + ++LIE+ + Sbjct: 149 NMDEAMAAAEAIGFPIIIRASYTLAGGGSGVAYNIDEFKLLAQRGLDESPITEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSVNPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 96/291 (32%), Gaps = 35/291 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63 AL++ G + + D D S L ++ +PD ++H Sbjct: 582 ALKEMGIETIMVNCNPETVSTDYDTSDVLYFEPIDFEHVRSIVEAEQPDGI--IVHFGGQ 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQ 121 + L + + L+ ++ + V G+ + + + Sbjct: 640 TPLKLANGLHAIGAKIAGTSAEVIDLAENREKFSAFVIEQGLKQPENGLSMTKEGAFEIA 699 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180 + P +++P + ++ + + + + S ++ +L+++++D +EL Sbjct: 700 EKLGYPVLVRPSYVLGGRAMRIVYNEDELRTYMDVAVSVSNDSPVLVDKFLDQAVELDVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + ++ + P + +I +V++ +G Sbjct: 760 AISDGKEVYIGSVMQHIEEAGIHSG---DSACSLPPVSLSAEIQAQVEQQTKKIALGLGV 816 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ + +V+ +E+N + T P ++ G ++ Sbjct: 817 IGLLNIQYAI--YQNEVYLIEVNPRASRT----VPFVSKATGMPLAKVATR 861 >gi|315640850|ref|ZP_07895949.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus DSM 15952] gi|315483389|gb|EFU73886.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus DSM 15952] Length = 1049 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR + +L PD Sbjct: 20 GTQACLALKEEGYEVVLVNSNPATIMTDREIADRVYIEPITYEFVSRILRKEMPDAILPT 79 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P I Sbjct: 80 LGGQTGLNMAMELSKAGILDELKIELLGTKLSAIDQAEDRDLFKKLMEELAQPIPESDII 139 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 140 TTVEQAVVFAKKIGYPVIVRPAFTLGGTGGGMCANEEELRQIAENGLKLSPVTQCLIERS 199 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 200 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 258 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 259 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 314 Query: 292 M 292 + Sbjct: 315 I 315 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 569 KAIQAAGYEAVIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPLGVIVQFGGQT 628 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + Sbjct: 629 AINLAEPLVKAGVKILGTTIEDLDRAENRDLFEQALKELEIPQPEGDTATNKEDAVAIAK 688 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 689 RIGFPVLVRPSYVLGGRAMEIVENETDLRDYMEHAVKASPEHPVLVDRYLVGKECEVDAI 748 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P + + + + C G Sbjct: 749 CDGKIVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSEKTKQTIIDYTKKLALGLNCIG 805 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ G ++ + Sbjct: 806 MMNIQFVI--HDETVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 850 >gi|313675823|ref|YP_004053819.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa DSM 4126] gi|312942521|gb|ADR21711.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa DSM 4126] Length = 937 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG + +L + G +V+ I+ +S+ +L D Sbjct: 29 SGSQASRSLREEGIEVTLINSNPATIMTDEVTADNIYLKPLTKKSIIEILEKHDIDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ + ++ + A + ++ + + GV VC Sbjct: 89 TMGGQTALNLAIECDKAGVWDKYKVKMLGVDVDAIDTTENRELFRLKMKELGVGVCEGET 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 F + I P VI+ LG ++K L + ++LIEQ Sbjct: 149 ATSFLQGKEIAQRIGFPLVIRSSFTLGGLGGSIVKDPAEFDNALKDGLHSSPIHEVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + ++ + +F + + + Sbjct: 209 SILGWKEYELEILRDNIGNVIVICSVENFDPMGVHTGDSITVAPAQTLPDTVYQEMRNLA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + + +EIN P ++ S + GY ++ Sbjct: 269 IKMIKGIGNFAGGCNVQFAVNPENDDIIGIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 93/307 (30%), Gaps = 40/307 (13%) Query: 2 AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39 +++G G E + S +A ++ G++ I D D Sbjct: 558 VIILGSGPNRIGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYF 614 Query: 40 -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 + ++ H KP L G + + I T L A Sbjct: 615 EPVFWEHIYDIILHEKPVGVIVQLGGQTALKLAEKLNRYGINIIGTSFDALDLAEDRGSF 674 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + P + ++ I P +++P G+ ++ ++ + + Sbjct: 675 SKLLADNDIPYPKFTVVEDADNALEMAKDIGFPMLVRPSYVLGGQGMKIVINERELEEHV 734 Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + G+++L++ ++DG IE + D + + + Sbjct: 735 VDVLRDIPGNKVLLDHFLDGAIEAEADAICDGEDVYIIGVMQHVEPAGIHSG---DSYAV 791 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + P + + +++ A+ +G+ F + V+ +E N + T Sbjct: 792 LPPYNLGDFVLTQIETYTKKIALALETKGLINIQFAI--KNDIVYIIEANPRASRT---- 845 Query: 274 FPEMAAY 280 P + Sbjct: 846 VPFICKA 852 >gi|303327367|ref|ZP_07357808.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp. 3_1_syn3] gi|302862307|gb|EFL85240.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp. 3_1_syn3] Length = 1080 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + ++ ++ +PD Sbjct: 29 SGSQAVKALKEEGYEVVLVNSNPATIMTDPQMADATYVEPIEQDTLAAIIRKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +L + + + + ++ + + G+ + S Sbjct: 89 TLGGQTALNAALGLAKSGVLSECGVELIGARAEVIEKAESRELFREAMENIGLKMPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ P +++P G V + + + S + +++IEQ Sbjct: 149 ARNLDDVRRLGNVLPFPLIVRPAFTLGGTGGGVAYNLEDLEEVAARGLSASPTSEVMIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + ++ K Sbjct: 209 SVLGWKEIEMEVMRDQKDNCVIICSIENFDPMGVHTGDSITVAPVQTLSDMEYQKIRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFGVDPANGDIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVMNIVEKEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + + ++ I+ P V++P + V+ Sbjct: 675 RAEDRERFQALIQKLGLLQPPNGTAMDLEEALEVAERITYPVVVRPSYVLGGRAMAVVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + +LI+++++ V DA D E+ V + E Sbjct: 735 AAELADYFREQVPEKPEHPILIDKFLE---HAVEVDVDALSDGREVYVAGIMEHIEEAGI 791 Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP+ D + A + + G+ F ++ LE+N + Sbjct: 792 HSGDSACVLPSFSLSYDHVALIAAQAEALARELRVVGLMNIQFAI--KGDDIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G L Sbjct: 850 ASRTA----PFVSKATGVPLPYL 868 >gi|260889104|ref|ZP_05900367.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii F0254] gi|260861164|gb|EEX75664.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii F0254] Length = 1074 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G+KV ++ + V ++ +PD Sbjct: 43 GTQACLSLREEGYKVILVNSNPATIMTDKEIADKVYIEPLTVEFVSKIIRKERPDALLPT 102 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +LE + + + + + D+ R VP I Sbjct: 103 LGGQVGLNLAVELHKAGVLEECGVELLGTKLDSIKQAEDRELFRDLMNELGEPVPESDII 162 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + ++ Q L+E+ Sbjct: 163 HNLEEARRFVEKIGYPVIVRPAFTMGGTGGGICHNDEELEDIVTNGLRYSPVTQCLLEKS 222 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 223 ISG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREYHMLRDVS 281 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 282 LKIIRALKIEGGCNVQLALDPYSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 337 Query: 292 M 292 + Sbjct: 338 I 338 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 32/287 (11%), Positives = 95/287 (33%), Gaps = 32/287 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++++G++ ++ + V ++ +P+ G Sbjct: 592 KAIKESGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMAIIELEQPEGVVVQFGGQT 651 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T + +A + DK + + P+ + + + Sbjct: 652 AINLAEKLARHGVKILGTALEEIDNAENRDKFEALLHKLNIPQPLGKTAFDTETAVKNAA 711 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +++ + + + + +L ++Y+ G E+ + Sbjct: 712 EIGYPVLVRPSYVLGGRAMEIVYREEELRQYMENAVKVSPDHPVLTDRYLVGKEIEVDAI 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + P I + + + + G Sbjct: 772 CDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSITDSQKRTLIDYTTRLAKGLNIIG 828 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AAYAGY 283 + ++ +V+ LE+N P ++ ++ P A G Sbjct: 829 LLNIQYVI--SDGEVYVLEVNPRSSRTVPFLSKITGVPMANLAMKGI 873 >gi|255308623|ref|ZP_05352794.1| carbamoyl phosphate synthase large subunit [Clostridium difficile ATCC 43255] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L G + + D D V ++ KP+ G Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMGHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P V++P G + ++ + L + Q+L+E+ Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + + Y+ +++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|114562154|ref|YP_749667.1| carbamoyl phosphate synthase large subunit [Shewanella frigidimarina NCIMB 400] gi|114333447|gb|ABI70829.1| carbamoyl-phosphate synthase large subunit [Shewanella frigidimarina NCIMB 400] Length = 1073 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++A L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALQLEAQGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 MD + ++ P +I+P G + + Q + ++LLI++ Sbjct: 149 AHNMDEAYGVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + + P ++ + Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLNMKQPENATVTTVESAVIEAEK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVKVSNASPVLLDHFLDDAIEVDIDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + DI ++ +G G Sbjct: 767 CDGETVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSADIQARMRDQVSKLAFELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|313623243|gb|EFR93491.1| carbamoyl-phosphate synthase, large subunit [Listeria innocua FSL J1-023] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.6 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|293596891|ref|ZP_05265354.2| carbamoyl-phosphate synthase [Listeria monocytogenes HPB2262] gi|293583546|gb|EFF95578.1| carbamoyl-phosphate synthase [Listeria monocytogenes HPB2262] Length = 411 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 38 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 97 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 98 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 157 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 158 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 217 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 218 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 276 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 277 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 332 Query: 292 M 292 + Sbjct: 333 I 333 >gi|258592883|emb|CBE69192.1| carbamoyl phosphate synthase, large subunit [NC10 bacterium 'Dutch sediment'] Length = 1099 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 85/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPEIADRTYVEPLTVSVVEQIIARERPDALLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ + A D + VP Sbjct: 89 TLGGQTGLNLAVALAEEGILDRYGVEMIGAKLQAIKKAEDRDLFKQAMQKIGVEVPESGH 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + + S + Q+LIE Sbjct: 149 AYSHEEARSIVERIGYPAIIRPSFTLGGAGGSIAYNRDEFDEQVQWGLSMSPVHQVLIEA 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQLMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREIGVETGGSNIQFAVNPRNGQMLAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + +PD G + ++I T + Sbjct: 635 DRLYFEPLCL---EDVLNIAERERPDGVIVQFGGQTPLKLAIPLERAGVKILGTPPDAID 691 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + + + I P +++P + ++ Sbjct: 692 RAEDRERFKQVLQRLDLNQPPNGTAVSVSEALRIARQIGYPVLVRPSYVLGGRAMEIVYN 751 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + S+ + ++ + +L++++ D IE+ + D V + + Sbjct: 752 ESSLQEYMARAVQASLDHPVLVDKFLEDAIEMDVDALCDGREVVIGGIMEHIEAAG---V 808 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P +P + +++ +G G+ F V+ LE+N + Sbjct: 809 HSGDSACSLPPRSVPQSLLDQIRAQTKAMALELGVIGLINIQFAI--KDGIVYVLEVNPR 866 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G +L Sbjct: 867 ASRT----VPFVSKAVGVPLAKL 885 >gi|255521077|ref|ZP_05388314.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes FSL J1-175] Length = 990 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGKNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|290893036|ref|ZP_06556025.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J2-071] gi|290557396|gb|EFD90921.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J2-071] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLAEGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|229019089|ref|ZP_04175924.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273] gi|229025333|ref|ZP_04181751.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272] gi|228735918|gb|EEL86495.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272] gi|228742189|gb|EEL92354.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273] Length = 1018 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229174552|ref|ZP_04302083.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3] gi|228608921|gb|EEK66212.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3] Length = 1018 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229192056|ref|ZP_04319025.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC 10876] gi|228591382|gb|EEK49232.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC 10876] Length = 1018 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|226224438|ref|YP_002758545.1| carbamoyl-phosphate synthetase (catalytic subunit) [Listeria monocytogenes Clip81459] gi|259585682|sp|C1KWD4|CARB_LISMC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|225876900|emb|CAS05609.1| Putative carbamoyl-phosphate synthetase (catalytic subunit) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALGILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|254826123|ref|ZP_05231124.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J1-194] gi|293595363|gb|EFG03124.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J1-194] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGKNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|217964012|ref|YP_002349690.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes HCC23] gi|254813599|sp|B8DDR7|CARB_LISMH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|217333282|gb|ACK39076.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes HCC23] gi|307571417|emb|CAR84596.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes L99] gi|313608127|gb|EFR84184.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes FSL F2-208] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|46908067|ref|YP_014456.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes serotype 4b str. F2365] gi|254852741|ref|ZP_05242089.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL R2-503] gi|300763852|ref|ZP_07073849.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes FSL N1-017] gi|67460315|sp|Q71YI1|CARB_LISMF RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|46881337|gb|AAT04633.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes serotype 4b str. F2365] gi|258606065|gb|EEW18673.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL R2-503] gi|300515588|gb|EFK42638.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes FSL N1-017] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|16801015|ref|NP_471283.1| carbamoyl phosphate synthase large subunit [Listeria innocua Clip11262] gi|22095516|sp|Q92AH3|CARB_LISIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|16414450|emb|CAC97179.1| pyrAB [Listeria innocua Clip11262] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.2 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEAAIKVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|47093072|ref|ZP_00230850.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes str. 4b H7858] gi|47018573|gb|EAL09328.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes str. 4b H7858] gi|328466185|gb|EGF37342.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 1816] gi|328473557|gb|EGF44394.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 220] gi|332312276|gb|EGJ25371.1| Carbamoyl-phosphate synthase [Listeria monocytogenes str. Scott A] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + ++ Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|167752764|ref|ZP_02424891.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216] gi|167659833|gb|EDS03963.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216] Length = 1060 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 29/289 (10%) Query: 26 LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 + AG++ I+ + V V+ KP L G Sbjct: 578 IRAAGYEAIIINNNPETVSTDYTTSDKLYFEPLTVEDVMNVITLEKPKGIVVSLGGQTAI 637 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + +A P ++ + + I Sbjct: 638 NLAEPLHELGVPIIGTGVEAIRNAEDRGCFEKIMEELGIPQPEAEAVTDIEAGVRAAERI 697 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P + ++ ++ + L + N +L+++Y+ G EL + D Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNEDSPVLVDRYIMGRELEVDAICD 757 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + + + + + ++ + IG G+ Sbjct: 758 GKDVFIPGIMEHVEKTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVRLGRRIGIVGLY 814 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G ++ ++ Sbjct: 815 NIQFILDGEED-VYVIEVNPRSSRT----VPFLSKATGVPMADIATRVI 858 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ + +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIQTDVQIADKVYMEPLTLEYVAKIVRYERPDAIVPG 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ +EI T + A + + V Sbjct: 90 LGGQTGLNLAVQLAKKGVLQECQVEILGTSFQSIEQAEDRELFKELCQSLGEPVLPSLIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +++ I P V++P G + + + + S + Q+LIE+ Sbjct: 150 NNIDEAVEAAKRIGYPVVLRPAFTLGGTGGGFADDETQLREMMRNALSLSPVHQVLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T IA+ + ++ + + Y+ ++ A Sbjct: 210 IKG-YKEIEYEVIRDHNDTAIAICNMENIDPVGVHTGDSIVVAPSQTLTNKEYQLLRDSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DPLS + +E+N P ++ S + +GY + Sbjct: 269 LRLIRALKIEGGCNVQFALDPLSFNYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|154484782|ref|ZP_02027230.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC 27560] gi|149734630|gb|EDM50547.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC 27560] Length = 1065 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 98/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGLEVVLVNSNPATIMTDKDIADKVYIEPLTVPVLEKIIEKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ LE E + + D++ K+ + G P PS + Sbjct: 90 LGGQAGLNLAMEIAETDFLEKHECRLIGTTSETIKKAEDRLEFKETMEKIGEPCAPSLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + L + Q+L+E+ Sbjct: 150 ENVEDGIAFTNKIGYPVVLRPAYTLGGSGGGIAHNQVELVEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + ++ ++ A Sbjct: 210 IAGW-KEVEYEVMRDSAGNCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEHQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIINELNITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYTLDEIKNAITKK 341 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 36/293 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++ + D D V ++ KPD A G Sbjct: 581 AFKEEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVENIVNIEKPDGAVVQFGGQ-- 638 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121 + L + +P + + D+ +++ C +P + + Sbjct: 639 TAIKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEKCSIPRPTGGTVFTAEEAKEVA 698 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P G+ + D+ + + + +L+++Y+ G E+ Sbjct: 699 NRLGYPVLVRPSYVLGGQGMQIATCDEEVEEFMEIINRIAQDHPILVDKYLQGTEVEVDA 758 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240 + D + + P + S +S V PA +I ++ +++ Sbjct: 759 ICDGTDILI----PGVMEHIERAGVHSGDSISVYPAYSLSKEIIDTIEDYTEKLARSLHV 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ F+ KV+ +E+N + T P ++ G +L + Sbjct: 815 KGMINIQFIVC--DGKVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKCI 861 >gi|228940975|ref|ZP_04103533.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973906|ref|ZP_04134481.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980495|ref|ZP_04140805.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis Bt407] gi|228779315|gb|EEM27572.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis Bt407] gi|228785772|gb|EEM33776.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818654|gb|EEM64721.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 1018 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ +PD L G G + + + + + IL + LS + + Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 100 VS-------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|312963094|ref|ZP_07777579.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas fluorescens WH6] gi|311282605|gb|EFQ61201.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas fluorescens WH6] Length = 1073 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ +++ + L + ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEEELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +PL I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPLHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|229180162|ref|ZP_04307506.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W] gi|228603371|gb|EEK60848.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W] Length = 1018 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 RS + +P I + I P +++P G + ++ + Sbjct: 77 LFRSLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|257075650|ref|ZP_05570011.1| carbamoyl phosphate synthase large subunit [Ferroplasma acidarmanus fer1] Length = 1051 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%) Query: 18 SGKACASALEDAGFKVS----------------------QIDVDRSVGLVLAHLKPDLAF 55 SG AL++ G K +D SV ++ K D Sbjct: 27 SGSQACLALKEEGIKTVLLNSNPATIQTDREIADRVYIEPVDP-ESVLAIIKKEKIDSIL 85 Query: 56 NVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCP 109 G G + IL I + + + ++ D+ + V Sbjct: 86 PSTGGQVGLNLVILLERLGILSSYNIKVLGTPVTSIEIAEDRKKFFNLMKKIGEPVIESY 145 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ N + + P +++ G ++IK + + D H D + ++ Sbjct: 146 TLTKNDYRDLMPGIKKYPLILRTGFSLGGSGGVIIKNVKEL-SDYCDDYFSVHDDMVELD 204 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + I++ + ++ + + D Y++++ Sbjct: 205 ESLLG-LKEIEYEMMRDNNGNCISICNMENLDPMGVHTGESIVTTPSLTLSNDSYQKLRT 263 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A IG G F D + + +E+N + T S + +GY + Sbjct: 264 SAIHVVNEIGVIGSCNIQFALDQEKDEYYIVEVNPR---TSRSS-ALASKASGYPIARVS 319 Query: 290 LWM 292 + Sbjct: 320 TKI 322 >gi|75908114|ref|YP_322410.1| carbamoyl phosphate synthase large subunit [Anabaena variabilis ATCC 29413] gi|75701839|gb|ABA21515.1| carbamoyl-phosphate synthase large subunit [Anabaena variabilis ATCC 29413] Length = 1097 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ + + GV VCPS Sbjct: 89 TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + + Q+LI+ Sbjct: 149 ASSLDEAKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 8/175 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D + + + +LI+++++ + Sbjct: 722 AKRIGYPVVVRPSYVLGGRAMEIVYSDAELERYMTFAVQVEPEHPILIDKFLEN-AIEVD 780 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V A + + +S ++ + +P + +++ QA+ Sbjct: 781 VDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLPPAVLNQIRSWTVQLAQALSV 840 Query: 241 RGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ F S +V+ LE N + T P ++ G S +L + Sbjct: 841 VGLMNIQFAVVGASSYSPQVYILEANPRASRT----VPFVSKATGISLAKLASLI 891 >gi|315103457|gb|EFT75433.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL050PA2] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRREHPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + L+EQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|315091957|gb|EFT63933.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL110PA4] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + L+EQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSRAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|314966795|gb|EFT10894.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL082PA2] gi|314981133|gb|EFT25227.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL110PA3] gi|315093286|gb|EFT65262.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL060PA1] gi|327327622|gb|EGE69398.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL103PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + L+EQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|314923021|gb|EFS86852.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL001PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + L+EQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|282854052|ref|ZP_06263389.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes J139] gi|282583505|gb|EFB88885.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes J139] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + L+EQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIARVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|325288980|ref|YP_004265161.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271] gi|324964381|gb|ADY55160.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271] Length = 1214 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175 I P ++K GG +G+ + + +S+ + L Sbjct: 147 AGQIGYPVMLKSTAGGGGIGMRICQNAESLCAAYESVKYLAKTNFKDDGIFLESYIARAR 206 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + G S ++ + K LP I + + A Sbjct: 207 HIEVQIFGSRSGEIIAVGERDCSVQRRNQKVLEETPAPGLPQHIRKE----MHEAAVRLA 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ G + +FL+D +++ ++LE+N + G+T G +L+ W Sbjct: 263 KSAGYQNAGTVEFLYDTQAQQFYFLEVNTRLQVEHGVTE--------ELYGI---DLVEW 311 Query: 292 MVEDAS 297 M+ +A+ Sbjct: 312 MIREAA 317 >gi|294084785|ref|YP_003551543.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664358|gb|ADE39459.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum IMCC1322] Length = 375 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 14/287 (4%) Query: 19 GKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFN-VLHGNFGEDGLV-QAILELL 75 K S L KVS ++ LA KPDL F+ V + F E+ + LEL Sbjct: 83 AKLIHSILSKKYSKVSITEISTLECLTKLAKRKPDLVFSGVKYFEFEENQIWLNDFLELN 142 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133 I Y S A K +K +V G+ +++N + D+ I P +KP+ Sbjct: 143 HIRYIGSNHAALDREHHKGFAKSIVKQAGILTADYVIINTNKVSVDNNMNIPYPVFVKPV 202 Query: 134 KGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---- 187 +GG S+GI + + L+E Y+ G E + G++ D Sbjct: 203 RGGDSIGIDDLSLVFDRKQLDAKVDQICNVLNCDALVESYLTGREFSVGILEDERTNLLT 262 Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISR 245 EI PK++ L + K+ ++K++ + A +A+G R R Sbjct: 263 AMPIEIIAPKNERGHRVLDHEIKRLDQETVRKVKNKTLHKKLSEVGKSAFKALGGRSFGR 322 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 D ++E N+ PG++ + A ++ +++L + Sbjct: 323 IDIRLCAK-GLPHFVEANLMPGLSKGYFYRSCALNLNMTYDDMILLL 368 >gi|241663321|ref|YP_002981681.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii 12D] gi|240865348|gb|ACS63009.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii 12D] Length = 1081 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 33/292 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP + V +G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKP-VGLIVQYGGQT 650 Query: 64 E-DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T ++ +A ++ + P + + Sbjct: 651 PLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAE 710 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + +S ++ + P + E++R +A+ Sbjct: 771 LSDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVI 827 Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F + V+ LE+N + T P ++ G ++ Sbjct: 828 GLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGVPLAKVAAR 875 >gi|167582310|ref|ZP_02375184.1| carbamoyl phosphate synthase large subunit [Burkholderia thailandensis TXDOH] Length = 1084 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQQDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|300023326|ref|YP_003755937.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium denitrificans ATCC 51888] gi|299525147|gb|ADJ23616.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 1091 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D V ++A KPD Sbjct: 29 SGTQACKALREEGYRIILVNSNPATIMTDPDLADATYIEPITPEVVAKIIAKEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + Q IL+ + + A + D+ ++ + + G+ S Sbjct: 89 TMGGQTALNTALALHQQGILQRHGVELIGANAAAIDKAEDRQLFREAMKTIGLETPRSKL 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D+ + P +I+P G + + + + Q+L+E+ Sbjct: 149 AHTREEAADALEHVGLPAIIRPSFTLGGTGGGIAYNREEFFEIAERGLDASPTTQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEFEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.2 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P + DI E++R A A+ G+ F +VF LE+N + T Sbjct: 813 CSLPPHSLSADIITELERQARELALALRVVGLMNIQFAI--KDGEVFILEVNPRASRT-- 868 Query: 272 SIFPEMAAYAGYSFRELLLWM 292 P +A G + + Sbjct: 869 --VPFVAKVIGLPIASIASRI 887 >gi|83718685|ref|YP_443293.1| carbamoyl phosphate synthase large subunit [Burkholderia thailandensis E264] gi|167620407|ref|ZP_02389038.1| carbamoyl phosphate synthase large subunit [Burkholderia thailandensis Bt4] gi|257139529|ref|ZP_05587791.1| carbamoyl phosphate synthase large subunit [Burkholderia thailandensis E264] gi|83652510|gb|ABC36573.1| carbamoyl-phosphate synthase, large subunit [Burkholderia thailandensis E264] Length = 1084 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQQDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|295130560|ref|YP_003581223.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes SK137] gi|291375949|gb|ADD99803.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes SK137] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDETELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|297530689|ref|YP_003671964.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. C56-T3] gi|297253941|gb|ADI27387.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. C56-T3] Length = 1065 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T L A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + + N +L+++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + ++ ++ + + Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ LE+N + T P ++ G L + Sbjct: 814 VGLLNIQFVVAGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860 >gi|297571589|ref|YP_003697363.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium haemolyticum DSM 20595] gi|296931936|gb|ADH92744.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium haemolyticum DSM 20595] Length = 1063 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 29/293 (9%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 + DAG++ I+ + V ++ H +P L G Sbjct: 572 AIKTIRDAGYEAIIINDNPETVSTDYTTADKLYFEPLTVEDVLNIVDHEQPIGVITSLGG 631 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + T + A D+ + ++ + Sbjct: 632 QTAINLAGPLAARGVTLLGTSLEAINRAEDRDEFERLLSTLNIPQAPGKAVTNVEDGIAV 691 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P + ++ D+ + L Q + +L+++Y+ G EL Sbjct: 692 AAEVGYPVLVRPSFVLGGRAMRIVGSDEQLHHYLSQGLEIDTDRPVLVDKYISGKELEVD 751 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + +S + + + + ++ +AIG Sbjct: 752 AICDGQDVFVPGIMELVEHTG---VHSGDSISVYPTFSVSNKVKGDILAYTKALGKAIGI 808 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ D KV+ +E+N + T P ++ GY + ++ Sbjct: 809 VGLFNVQFIVDE-DEKVYIIEVNPRSSRT----VPFLSKVTGYGLPAIATRVI 856 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 95/295 (32%), Gaps = 32/295 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYRVILVNSNPATIMTDSDVADRVYMEPLTLEYVAKIIRKERPDAIVPG 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 + G G + +Q +++ T S + A ++ + V Sbjct: 90 IGGQTGLNLAMQLEKKGILAECGVQLLGTPSESIERAEDREQFKQLCESIGEPVIASDIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + ++ + + Q+LIE+ Sbjct: 150 YTVEEALAAAERIGYPVVLRPAFTLGGTGGGFAHSPEELTEMMVNALHLSPVHQVLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D T + + + D+ +++ A Sbjct: 210 IVGYKEIEFEVMRDASDHTICICSMENIDPVGVHTGDSVVVAPALSLNESDLEM-LKQSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 F +++ G F +P + + F +E+N P ++ S + +GY Sbjct: 269 FKLIRSLKIEGGCNVQFALNPTTSEYFLIEVN--PRVSRSS--ALASKASGYPIA 319 >gi|225181285|ref|ZP_03734730.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] gi|225168065|gb|EEG76871.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] Length = 1084 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL+D G +V ++ + ++ ++A +PD Sbjct: 30 GTQACRALKDEGLEVVLVNSNPATIMTDTNIADRVYIEPLQIDTLTEIIAKERPDGLLPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + + T + A D + + + +P + Sbjct: 90 LGGQVGLNAGKDLAEQGILERYGVRMLGTPLDAIIRAEDRDHFKQTMEMLNEPIPASTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P V++P G ++ + + + +Q+L+EQ Sbjct: 150 SSIDDAVSFAAEAGYPVVVRPAYTMGGTGGGFAADEEELRSTAQRGLKASPINQILVEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + S D + ++ + + ++ ++ + Sbjct: 210 VAGWKEVEFEVMRDSNDNCITICSMENIDP-VGVHTGDSIVVAPAQTLTDKEFQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F D S +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNIQFALDTDSFNYIVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M--------VEDASCLR 300 + +E+A + Sbjct: 325 IAIGMTLDEIENAVTQK 341 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 32/289 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+DAG++ + D D V +L +PD G Sbjct: 586 ALQDAGYETIIVNNNPETVSTDFDTADRLYFEPLQPEDVLNILDKEQPDGVIVQFGGQTA 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A DK P ++ + + Sbjct: 646 INLAEPLANAGIPIIGTSVENIDRAEDRDKFDLLLTELDIARPPGQTVTSAAEAVPAAQA 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + + + +L+++Y+ G EL + Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYSDDELLEYMHNAVRVSPRHPVLVDKYLLGTELEVDAIS 765 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242 D + P + S +S + PA+ D +KE+ + + +G Sbjct: 766 DGETVLI----PGIMEHIERAGVHSGDSIAMYPAQSIADKHKELIVDYTTRLARGLKVKG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 I ++ + ++ +E+N + T P ++ +L Sbjct: 822 IINIQYVLFEDN--LYVIEVNPRSSRT----VPFLSKVTDIPMVQLATR 864 >gi|218133233|ref|ZP_03462037.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC 43243] gi|217992106|gb|EEC58110.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC 43243] Length = 1066 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNV 57 G +L++ G +V + D+ +SV ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTTKSVEQIILKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + ++ L+ + + L + D++ K V + Sbjct: 90 LGGQAGLNLAMELDEAGFLKEHNVRLIGTTALTIKKAEDRLMFKETMEKIHEPVAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + + + L + Q+L+E+ Sbjct: 150 ENVEDGVVFAEKIGYPVVLRPAYTLGGSGGGIAHCREELEEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A + G++ I D D V V+ KPD A G Sbjct: 581 AFKREGYETIIINNNPETVSTDFDIADKLYFEPLTAEDVENVVRLEKPDGAVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + + ++ + + + Sbjct: 641 IKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEKTQIPRAKGHTVYTVDEALKAANE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D + + + +L+++Y+ G E+ + Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAVSDTDVIEFMNIINRIKQDHPILVDKYLMGKEIEVDAVC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PAK I ++ +A+ +G Sbjct: 761 DGDDILI----PGIMEHIERAGIHSGDSISVYPAKSLSPKIIDMIEDYTGRLARALHVKG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 817 LINIQFI--DYNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKVI 861 >gi|187929113|ref|YP_001899600.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii 12J] gi|187726003|gb|ACD27168.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii 12J] Length = 1081 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHALGLRQPPNRTARAEDEALKLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGIPLAKVAAR 875 >gi|153810105|ref|ZP_01962773.1| hypothetical protein RUMOBE_00486 [Ruminococcus obeum ATCC 29174] gi|149834283|gb|EDM89363.1| hypothetical protein RUMOBE_00486 [Ruminococcus obeum ATCC 29174] Length = 118 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38 + VL GG S+ER+VS+ SG AL G + +DV Sbjct: 3 IVVLAGGTSTERDVSIVSGTGICGALRQKGHQAILVDV 40 >gi|325294322|ref|YP_004280836.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064770|gb|ADY72777.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1071 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D + ++ +PD Sbjct: 29 SGTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + ILE + + I A + D+ K+ + G+ V S Sbjct: 89 TVGGQTALNLAVELYEAGILEKYGVELIGAKIEAIKKAEDRELFKEAMLKIGLEVPKSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M+ + P +I+P G V + + + +++LIE+ Sbjct: 149 ARSLDEAMEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKRGLDASPINEILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQVLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREIGVETGGSNVQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ D D ++ KP+ G Sbjct: 584 ALRELGYEAHMANCNPETVSTDYDTSDKLFFEPLTLEDALNIVEKEKPEGVIVQFGGQTP 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V E ++I T S + A ++ R+ P Sbjct: 644 LKLSVPLEKEGVKILGTSSESIDIAEDRERFRTLLNKLGLKQPPSGIARSLEEAEKIAEE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + ++ + +LI+++++ Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYDINELRTYMTEAVEVSEDRPVLIDKFLED---AVEFDV 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + E S +S VLP +P +I +E++ + + +G Sbjct: 761 DAVCDGKRVVIGGVMEHIEEAGIHSGDSACVLPTFSVPKEIVEEIKEITRKIALELNVKG 820 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 821 LINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKVATK 863 >gi|323526829|ref|YP_004228982.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp. CCGE1001] gi|323383831|gb|ADX55922.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. CCGE1001] Length = 1084 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + Q P VI+P G + + + + Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|182624281|ref|ZP_02952066.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens D str. JGS1721] gi|177910499|gb|EDT72872.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens D str. JGS1721] Length = 1067 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ PD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + +D Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTAEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFSNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|168205836|ref|ZP_02631841.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens E str. JGS1987] gi|170662675|gb|EDT15358.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens E str. JGS1987] Length = 1067 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ PD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + +D Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIDKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|166240878|ref|ZP_02240750.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 6/203 (2%) Query: 98 QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 Q V F M + I P IKP GSS+GI + + + ++ Sbjct: 32 QCVFRHFTRSQWQKDQPFFLMGLEISIGYPCFIKPANLGSSVGISKARNRDELIKAVEEA 91 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213 + +++IE++V+ E+ V+G+ +V+ + SDFY Y+ KY NS Sbjct: 92 F--KYDRKVIIEEFVEAREIEVAVLGNEEPEVSVPGEIISSKNSDFYDYKAKYQDGNSIM 149 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 V+PA IP + ++Q + I +S DF + IN P TP Sbjct: 150 VIPADIPEETAAQIQEXXIXXFKXIXXSXLSXLDFFMRNSXXHIXINXINTXPXFTPFFK 209 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P + + + ++L +++ A Sbjct: 210 DPLLXKXSXXPYFKVLDELIDLA 232 >gi|116873270|ref|YP_850051.1| carbamoyl phosphate synthase large subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458554|sp|A0AJU0|CARB_LISW6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116742148|emb|CAK21272.1| carbamoyl-phosphate synthase, large subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYSFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.2 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSQQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|320101561|ref|YP_004177152.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC 43644] gi|319748843|gb|ADV60603.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC 43644] Length = 1083 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 102/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + +V ++A +PD Sbjct: 29 SGTQACKALREEGFRVVLVNSNPATIMTDPEMADRTYIEPVIPEAVADIIAVERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + Q +LE + A + D+ K+ ++ G+ S L Sbjct: 89 TLGGQTGLNVALALADQGVLERYGCRMIGANAEAIRKAEDRQLFKKCMAEIGLECARSGL 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P V++P G + + + + +L+E+ Sbjct: 149 ATSLEEARALRDEIGLPCVLRPSFTLGGSGGGIAFNKEEFERIAAHALELSPVHSVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D + +F ++ + T + Y+ ++ Sbjct: 209 SVIGWKEYEMEVMRDGADNAVVVCSIENFDPMG-VHTGDSITVAPAQTLSDKEYQTLRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +AIG G S F DP + +V +E+N P ++ S + G+ ++ Sbjct: 268 SLAILRAIGVETGGSNVQFAVDPRTGRVLVIEMN--PRVSRSS--ALASKATGFPIAKIA 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 99/321 (30%), Gaps = 44/321 (13%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL G++V + D D S Sbjct: 565 IVVLGGGPN-------RIGQGIEFDYCCCQAAFALRADGYEVVMVNSNPETVSTDYDTSD 617 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + N+ G + + I T + A Sbjct: 618 QLFFEPLTVEDVLNICERVKPIGLVVQFGGQTPLNLARALEAAGVPILGTSPESIDLAED 677 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D+ S + I P +++P + ++ + S+ Sbjct: 678 RDRFSQVLARLGLRQTPNGSAVKVEEAARIAATIGYPVLVRPSFVLGGRAMEIVYDESSL 737 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ + +LI+++++ + V + + +S + Sbjct: 738 LKYMNEAVDVSSDRPVLIDKFLE-DAVEVDVDAVRDATGVVVVAGVMEHIEEAGIHSGDS 796 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + + P +P +I E++R L A+ +G+ F +V+ LE N + T Sbjct: 797 ACAIPPHNLPPEIIAEIKRQTRLLADALEVKGLMNLQFAV--KDGQVYVLEANPRASRT- 853 Query: 271 VSIFPEMAAYAGYSFRELLLW 291 P ++ G + ++ Sbjct: 854 ---VPFVSKATGLNLAKVAAR 871 >gi|254516628|ref|ZP_05128687.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium NOR5-3] gi|219675051|gb|EED31418.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium NOR5-3] Length = 1072 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D R+V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWRTVARIIEVEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D + +LE + + A + D+ + + G+ Sbjct: 89 TMGGQTALNCALDLAREGVLEANGVEMIGATKEAIDKAEDRELFDKAMKRIGLETPRASF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + L+ + +LLI++ Sbjct: 149 ARSMEEAHAVREKLGFPCIIRPSFTMGGSGGGIAYNREEFEEICLRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGVCPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 94/271 (34%), Gaps = 18/271 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++A +P G + I T + Sbjct: 613 DRLYFEPVTL---EDVLEIVAKEQPKGVIVQFGGQTPLKLARALEAAGVPIIGTTPDAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P ++ +++ I P V++P + ++ + Sbjct: 670 RAEDRERFQQLIQELGLLQPANTTVRSVEQAIEAARTIGYPLVVRPSYVLGGRAMEIVYR 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + + ++ S + +L++ ++ IE+ + D V + + Sbjct: 730 EEDLLRYMREAVSVSDESPVLLDSFLSAAIEVDIDAVSDGEQVVIGAIMQHIEQAG---V 786 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263 +S ++ + P +P D+ +++ A+G +G+ + K++ +E+N Sbjct: 787 HSGDSACSLPPYSLPADVQDQMREQVRQMALALGVKGLMNVQLAW--QDEKIYVIEVNPR 844 Query: 264 ---VQPGMTP---VSIFPEMAA-YAGYSFRE 287 P ++ S+ A AG S + Sbjct: 845 ASRTVPFVSKCIGTSLAKVAARCMAGVSLED 875 >gi|183220671|ref|YP_001838667.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910774|ref|YP_001962329.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775450|gb|ABZ93751.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779093|gb|ABZ97391.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1103 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V + D D + ++ KPD Sbjct: 29 SGTQATKALREKGIRVILVNSNPATIMTDPDLADATYIEPLTVPVLEKIIKKEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE + + + A + D+ K + G+ V S + Sbjct: 89 TVGGQTALNLALALHREGVLEKYNVELIGAKVDAIRKAEDRELFKLAMEKLGIRVAKSFM 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +I+P G ++ + S + Q+L+E+ Sbjct: 149 VSDMEAARKAKDEIGFPIIIRPAFTLGGTGGGTCYEESEFEEIAQKGLSASPISQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVMGWKEFELEVMRDLNDNVVIICSIENLDPMGVHTGDSITVAPQQTLSDKEYQRLRDMS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + V +E+N P ++ S + G+ ++ Sbjct: 269 IDIIREIGVETGGSNIQFAVNPENGDVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 76/254 (29%), Gaps = 10/254 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V + +PD L G + I T + A + Sbjct: 652 EDVMAIFKKERPDGVIVQLGGQTPLKLAKSLEKRGVPILGTSPDSIDRAEDRKRFAEVLE 711 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P + I P +++P ++++ ++ + + ++ Sbjct: 712 KLNLKSPENGIASSKDKAREIARKIGYPVLVRPSYVLGGRAMLIVNEETELDKYMEEAEE 771 Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + LL++ + D E+ + D + + ++ + P Sbjct: 772 VSEDRPLLVDSFLQDATEVDVDALCDGKDVFIAGVMEHIEEAGIHSG---DSACVLPPQS 828 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I + +E++ + +G+ + ++ LE+N + T P +A Sbjct: 829 ISQRMIQEIEEATLRLALELDVKGLINVQYAI--KDETLYVLEVNPRASRT----VPFVA 882 Query: 279 AYAGYSFRELLLWM 292 G ++ + + Sbjct: 883 KSIGIPIVKIAVRL 896 >gi|220930279|ref|YP_002507188.1| carbamoyl-phosphate synthase, large subunit [Clostridium cellulolyticum H10] gi|220000607|gb|ACL77208.1| carbamoyl-phosphate synthase, large subunit [Clostridium cellulolyticum H10] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 87/252 (34%), Gaps = 8/252 (3%) Query: 42 VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101 V ++ KP G + E + I T + A K Sbjct: 622 VLDIIEKEKPLGVIVQFGGQTAINLAETLHQEGVNILGTSVHSIDIAEDRYKFLKLLETL 681 Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 +P + + + + I P +++P + ++ D+++ + +S + Sbjct: 682 DIPIPEGNTAFSFQHAKEIANKIGYPVLVRPSYVLGGRAMEIVYNDKTLEEYITMASEIS 741 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 +LI++YV G E+ + D + + + + +S + P + Sbjct: 742 TEHPILIDKYVVGREMEVDGICDGNEVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSK 798 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281 ++ ++ +A+ G+ F+ D +KV+ +E+N + T P M+ Sbjct: 799 EVKATIEDYTIRLAKALKVVGLFNIQFVMD-SDQKVYVIEVNPRASRT----VPIMSKIT 853 Query: 282 GYSFRELLLWMV 293 G + ++ Sbjct: 854 GIPMVGVSTKLI 865 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G +V I+ + V ++ KPD Sbjct: 29 SGTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKIIYKEKPDGILA 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + VQ + +E+ T + A + + + V Sbjct: 89 SLGGQTGLNMAVQLAEDGILDDLNIELLGTSLSSIKKAEDRELFKETMQEINEKVAPSKI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ I P +I+P G + + + + Q+L+EQ Sbjct: 149 VTTMQDAIEFAEKIGFPIIIRPAYTLGGSGGGIANNMEEFKYICGKGLKLSMISQVLLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G I + + + ++ + + Y+ ++ Sbjct: 209 SVAGW-KEIEYEVMRDSSDNCIIICNMENFDPVGVHTGDSIVVAPSQTLSNVEYQMLRNA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ +G F +P S + +E+N P ++ S + GY + Sbjct: 268 SIRIIRALDIKGGCNIQFALNPSSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVTA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|315108362|gb|EFT80338.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL030PA2] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|314962836|gb|EFT06936.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL082PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 95/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGIKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|314915483|gb|EFS79314.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL005PA4] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|313812977|gb|EFS50691.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL025PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|313764490|gb|EFS35854.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL013PA1] gi|313816029|gb|EFS53743.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL059PA1] gi|313827741|gb|EFS65455.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL063PA2] gi|314918233|gb|EFS82064.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL050PA1] gi|314920046|gb|EFS83877.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL050PA3] gi|314932060|gb|EFS95891.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL067PA1] gi|314955931|gb|EFT00331.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL027PA1] gi|314958136|gb|EFT02239.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL002PA1] gi|314967797|gb|EFT11896.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL037PA1] gi|315098501|gb|EFT70477.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL059PA2] gi|315101142|gb|EFT73118.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL046PA1] gi|327450817|gb|EGE97471.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL087PA3] gi|327453837|gb|EGF00492.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL083PA2] gi|328754237|gb|EGF67853.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL087PA1] gi|328754513|gb|EGF68129.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL025PA2] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|289425379|ref|ZP_06427156.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes SK187] gi|289154357|gb|EFD03045.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes SK187] gi|313792178|gb|EFS40279.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL110PA1] gi|313801871|gb|EFS43105.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL110PA2] gi|313838697|gb|EFS76411.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL086PA1] gi|315078052|gb|EFT50103.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL053PA2] gi|327330221|gb|EGE71970.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL097PA1] gi|327453105|gb|EGE99759.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL092PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + LIEQ Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ ++ ++ Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|218777877|ref|YP_002429195.1| carbamoyl phosphate synthase large subunit [Desulfatibacillum alkenivorans AK-01] gi|218759261|gb|ACL01727.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum alkenivorans AK-01] Length = 1066 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 95/296 (32%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + S+ ++ +PD Sbjct: 29 SGTQACKALRQVGYEIVLVNSNPATIMTDPGMADATYIEPLNVESLTRIIEKERPDALLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++I + D+ ++ +P Sbjct: 89 NLGGQSGLNLSSELAQQGVLKKYGVKIIGVQESAIKRGEDRDEFKATMNKLGIEMPKNTV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G ++ + + + + S + Q+LIE+ Sbjct: 149 VTTVEDAQKAAAELGFPVVVRPAYTMGGTGGGMVFNREELDVIASRGLSASRVGQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + T + I ++ +Q+ Sbjct: 209 SVLGWEELELEVVRDAKNQRITVCFIENVDAMGVHTGDSYCTAPM-LTISQELQDRLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +AI G + F DP + +V +EIN + T S + G+ Sbjct: 268 SYDIVEAIEVIGGTNVQFAHDPETGRVVVIEINPR---TSRSS-ALASKATGFPIA 319 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP+ G + + + I T + Sbjct: 606 DRLYFEPLTL---EDVLSIYEKEKPEGLIVQFGGQTPLNIAGELAKAGVPILGTQPESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ S + +P + I P +++P G+ V+ Sbjct: 663 LAEDRDRFASMMAELNIPMPEAGMASNLDDALQVAAKIGYPLMVRPSYVLGGRGMEVVHD 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ +LI++++ DA D ++ VP + Sbjct: 723 EEMLKHYVGKAVGVTPERPILIDKFLP---HAIEAEADALSDGVDVFVPAVMEHIELAGI 779 Query: 207 SSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S V+P + + ++ +A+ G+ + +V+ LE N + Sbjct: 780 HSGDSACVIPPISIPAKHLETIKEYTKKIAKALNVVGLMNIQYAICE--DRVYVLEANPR 837 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ S L + Sbjct: 838 ASRT----VPIVSKVCNVSMARLATRL 860 >gi|50842483|ref|YP_055710.1| carbamoyl phosphate synthase large subunit [Propionibacterium acnes KPA171202] gi|81826456|sp|Q6A914|CARB_PROAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|50840085|gb|AAT82752.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes KPA171202] gi|315105418|gb|EFT77394.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL030PA1] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGIPDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|325972387|ref|YP_004248578.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] gi|324027625|gb|ADY14384.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy] Length = 310 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 76/294 (25%), Gaps = 24/294 (8%) Query: 16 LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 L + A L + G+ + + S L + FN++ E+ L + +L Sbjct: 23 LRQAQWIAEILTEKGYATTLLPYSLSALEQLEKSV--VVFNLVDSAPKEELLSYLVPGIL 80 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 E + + + P+ + + + P + Sbjct: 81 ESLHLRYTGCSLSSLFLSTDKVLAKRLLSEHTLPTPALYSKESEKGLYLIKP----TTQD 136 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195 S + +L+ G EQY+DG E T + G Sbjct: 137 ASVGLDEQCLVEHDRVQAVLREKEQEVGCPCFAEQYIDGREFTVCMYGTKEEAHILPPYE 196 Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA--------------FLAHQAIGCR 241 + + Sbjct: 197 WVFNDYGQNAKIITYDAKWTENTFGYEHITAKYTHDEADKALLQQLVQISTSCWNVFDLH 256 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 G +R DF D + + LE+N P + +SF +++L++VE Sbjct: 257 GYARVDFRVDDQ-NRPYILELNANPSFYGFYHLAKEWL---FSFEDIVLFLVEH 306 >gi|300868973|ref|ZP_07113577.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC 6506] gi|300333040|emb|CBN58769.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC 6506] Length = 1101 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + + ++A +P Sbjct: 29 SGTQACKALREEGFQVVLVNSNPATIMTDPETAERTYIEPLTPEILEKIIAKERPQAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A ++ D++ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNLAVAVAKNGVLEKYGVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 P +I+P G + + + Q+LIE Sbjct: 149 ACNLDEARAIGHEIGSFPLIIRPAFTMGGTGGGISYNQEEFEEMAQGGIDASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ + +E+N P ++ S + G+ ++ Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPVNGEFIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 73/260 (28%), Gaps = 14/260 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL-------ASALSM 91 V ++ P+ G V L P + I +A Sbjct: 644 KEDVLNIIEAEDPEGVIIQFGGQTPLKLAVPLQKALTNHPSVKTKIWGTSPDSIDTAEDR 703 Query: 92 DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ + + I P V++P + ++ D + Sbjct: 704 ERFEKILRELNIQQAANGMARSFEDALIVAQRIGYPVVVRPSYVLGGRAMEIVYSDVELE 763 Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 ++ + +LI+++++ + V A + + +S ++ Sbjct: 764 RYMMFAVHVEPDHPILIDKFLEN-AIEVDVDAIADTSGNVVIGGIMEHIEEAGIHSGDSA 822 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + + L ++ +A+ G+ F +V+ +E N + T Sbjct: 823 CSIPTQTLSLAALATIRGWTVELAKALKVIGLMNIQFAV--QGEQVYIIEANPRASRT-- 878 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 879 --VPFVSKAIGVPLAKIASR 896 >gi|313837185|gb|EFS74899.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL037PA2] gi|314971957|gb|EFT16055.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL037PA3] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR + +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G G + + + + + +L + L D + VP Sbjct: 90 LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + + + L+EQ Sbjct: 149 VHTIDEAVKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D T + +F + ++ Y+ ++ Sbjct: 209 SIAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-YEMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SIEIVRALGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + + Sbjct: 639 AINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP S + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866 >gi|167574345|ref|ZP_02367219.1| carbamoyl phosphate synthase large subunit [Burkholderia oklahomensis C6786] Length = 1088 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G +A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKYGVELIGASPAAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHAEIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 42/305 (13%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLDLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFD-----------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + G+ F P ++ LE+N + T P ++ Sbjct: 821 LNVVGLMNVQFAIQQVPADANATDGPKEDIIYVLEVNPRASRT----VPYVSKATSLPLA 876 Query: 287 ELLLW 291 ++ Sbjct: 877 KIAAR 881 >gi|167562358|ref|ZP_02355274.1| carbamoyl phosphate synthase large subunit [Burkholderia oklahomensis EO147] Length = 1088 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G +A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKYGVELIGASPAAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHAEIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 42/305 (13%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFD-----------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + G+ F P ++ LE+N + T P ++ Sbjct: 821 LNVVGLMNVQFAIQQVPADANATDGPKEDIIYVLEVNPRASRT----VPYVSKATSLPLA 876 Query: 287 ELLLW 291 ++ Sbjct: 877 KIAAR 881 >gi|70734326|ref|YP_257966.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens Pf-5] gi|68348625|gb|AAY96231.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas fluorescens Pf-5] Length = 1073 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDAAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLDKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V ++ KP G Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + +++ +E+N + T P ++ G S Sbjct: 824 LMNVQLAL--QGDQIYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|239826549|ref|YP_002949173.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. WCH70] gi|239806842|gb|ACS23907.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. WCH70] Length = 1065 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + +L + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELARTGVLAECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + K ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICKNEEELIDIVSTGLKLSPVHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY +L Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFHYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 92/293 (31%), Gaps = 30/293 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V V+ KP G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEKPIGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T L A DK P + + Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQTLSELGIPQPQGKTAFSVEEAVRIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + DI +++ + + G+ Sbjct: 760 DGETVFIPGIMEHIERAG---VHSGDSIAVYPPQTLTKDIQQKIVDYTIKLARGLRIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ +V+ LE+N + T P ++ G + ++ A Sbjct: 817 LNIQFVM--YQGEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863 >gi|53803859|ref|YP_114289.1| carbamoyl-phosphate synthase, large subunit [Methylococcus capsulatus str. Bath] gi|53757620|gb|AAU91911.1| carbamoyl-phosphate synthase, large subunit [Methylococcus capsulatus str. Bath] Length = 1072 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPEMADATYIEPIDWQTVARIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + +LE + + A A + D+ + ++ + G+ V S + Sbjct: 89 TMGGQTALNCALDLDREGVLERFGVEMIGASREAIAKAEDRDQFRKAMIKIGLSVPKSEV 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + + +LLIE+ Sbjct: 149 AHSLEEALSVLDMVGYPAIIRPSFTLGGSGGGIAYNREEFVEICERGLELSPTHELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPRDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + GF+ I D D S Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAAMALREDGFETIMINCNPETVSTDFDTSD 613 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + V+H G + I T + A Sbjct: 614 RLYFEPLTLEDVLEVVHLEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPDSIDLAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + + P + + I P V++P + ++ D + Sbjct: 674 RERFQKLIDRLNLKQPPNRTARSLEEALRGAQEIGYPLVVRPSYVLGGRAMEIVFNDDDL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 +L++ S ++ +L++++ D IE+ + D + + + +S Sbjct: 734 KRYMLEAVSVSNESPVLLDRFLSDAIEMDVDAVADGQRVMIGGLMQHIEQAG---VHSGD 790 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + DI V+ L +A+G G+ + F ++F LE+N + T Sbjct: 791 SACSIPPYDLRADIQDRVREQVRLLAEALGVVGLMNTQFAI--QDDEIFVLEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ GY ++ Sbjct: 849 ----VPFVSKATGYPLAKVAAR 866 >gi|16803875|ref|NP_465360.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes EGD-e] gi|224500066|ref|ZP_03668415.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes Finland 1988] gi|224501364|ref|ZP_03669671.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes FSL R2-561] gi|254829169|ref|ZP_05233856.1| pyrAB [Listeria monocytogenes FSL N3-165] gi|284802281|ref|YP_003414146.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 08-5578] gi|284995423|ref|YP_003417191.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 08-5923] gi|22095510|sp|Q8Y665|CARB_LISMO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|16411289|emb|CAC99913.1| pyrAB [Listeria monocytogenes EGD-e] gi|258601579|gb|EEW14904.1| pyrAB [Listeria monocytogenes FSL N3-165] gi|284057843|gb|ADB68784.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 08-5578] gi|284060890|gb|ADB71829.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 08-5923] Length = 1070 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + +Q + + + Q L+E+ Sbjct: 150 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAITVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGVNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSIQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|329890720|ref|ZP_08269063.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas diminuta ATCC 11568] gi|328846021|gb|EGF95585.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas diminuta ATCC 11568] Length = 1099 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + V ++A KPD Sbjct: 29 SGVQACKALKAEGYRVILVNSNPATIMTDPEVADATYIEPITPEMVEKIIAKEKPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + L + + + D+ + + + G+ S Sbjct: 89 TMGGQTALNTALALNASGALARHGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I D+ + P +I+P + G + + + + + ++LIE+ Sbjct: 149 IHHIEEADDALAFVGLPAIIRPSFTLAGTGGGIAYNVEEFHEIVERGLDLSPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDHADNCIIICSIENIDPMGVHTGDSITVAPAMTLTDKEYQMMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 9/160 (5%) Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P V++P G++++ + + + ++ + D +LI+ Y++ V Sbjct: 724 YPVVLRPSYVLGGRGMMIVHDREGLDRYVGEAMRVSGDDPVLIDHYLN-RATEVDVDALC 782 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + +A + +S ++ + P + + E++R +A+ RG+ Sbjct: 783 DDETVFVAG-VLEHIEEAGVHSGDSACSMPPFSLRPETVAELKRQTTAMAKALKVRGLMN 841 Query: 246 SDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 F + + ++F LE+N + T P +A G Sbjct: 842 VQFAIEEPHSENPRIFVLEVNPRASRTA----PFVAKTIG 877 >gi|168213499|ref|ZP_02639124.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens CPE str. F4969] gi|170715072|gb|EDT27254.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens CPE str. F4969] Length = 1067 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ PD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + ++ Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|110803800|ref|YP_699823.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens SM101] gi|123047123|sp|Q0SPY4|CARB_CLOPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|110684301|gb|ABG87671.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens SM101] Length = 1067 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ PD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + ++ Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIKGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|255659411|ref|ZP_05404820.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella multacida DSM 20544] gi|260848373|gb|EEX68380.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella multacida DSM 20544] Length = 455 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 25/251 (9%) Query: 57 VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110 +H G ED + I + L DK ++ + G+P+ Sbjct: 77 AIHPGYGFLSEDADFAEQVTAHGITWIGPMPETIRLVGDKDVARASMQPSGIPMAKGSEP 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + N+ + + P ++KP+ GG G+ V + + L + Sbjct: 137 LKNNKEAIKMAKEVGYPVILKPVSGGGGKGMYVAHNEDDLKNILDALVDLKKTNYYFEHY 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + ++ D +V + + + + + ++ K+V L Sbjct: 197 IERSRHIEVQIVADNYGEVIHLGERECSIQ----RRNQKLLEESPSIALTHEMRKQVGTL 252 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFR 286 A A +++ + +FL D + +++EIN + G+T G Sbjct: 253 AVKAAKSVHYSNVGTVEFLLDLKDNQFYFMEINPRIQVEHGVTE--------EVTGI--- 301 Query: 287 ELLLWMVEDAS 297 +++ + A+ Sbjct: 302 DIVRTQIRIAA 312 >gi|171059503|ref|YP_001791852.1| carbamoyl-phosphate synthase large subunit [Leptothrix cholodnii SP-6] gi|170776948|gb|ACB35087.1| carbamoyl-phosphate synthase, large subunit [Leptothrix cholodnii SP-6] Length = 1091 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPATADVTYIEPITWQVVEKIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+++ K ++S G+ S + Sbjct: 89 TMGGQTALNCALDLHKNGVLDKYKVEMIGANEHAIEKAEDRLKFKDAMTSIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMEEAWAVQKAIQADIGGAGFPMVIRPSFTLGGTGGGIAYNPEEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 KELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDREY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P+ ++ +E+N P ++ S + G+ Sbjct: 269 QLLRNASIAILREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKIAAKL 333 Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 92/300 (30%), Gaps = 37/300 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 646 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + +A ++ + P + + Sbjct: 647 GGQTPLKLALDLERAGVPIIGTSPDSIDAAEDRERFQKLLHELGLKQPPNRTARTEEAAL 706 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 H I P V++P + ++ D+ + + + + +L+++++D Sbjct: 707 ALAHEIGYPLVVRPSYVLGGRAMEIVHGDKDLERYMRDAVRVSEKSPVLLDRFLDD---A 763 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237 V D D ++ + + + S +S LP + E++R + + Sbjct: 764 VEVDVDCISDGVDVMMGAIMEHIEQAGVHSGDSACSLPPYTLSTVLQDELRRQTTVMAKG 823 Query: 238 IGCRGISRSDFLF--DPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F D V+ LE+N + T P ++ G ++ Sbjct: 824 LKVVGLMNVQFAIQGDVTQGLDACTVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 879 >gi|261337962|ref|ZP_05965846.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium gallicum DSM 20093] gi|270277457|gb|EFA23311.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium gallicum DSM 20093] Length = 1122 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIDVPILEQIIAKERPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + V +L+ + + + A D+ K+VV G S + Sbjct: 89 TLGGQTALNAAVALGEAGVLDKYNVELIGASLEAIDRGEDRESFKKVVEEAGAESARSEI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + + + ++ D++LIE+ Sbjct: 149 AHTLEEVDAIAEEFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEYELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPAFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|94676523|ref|YP_588989.1| carbamoyl-phosphate synthase, large subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219673|gb|ABF13832.1| carbamoyl-phosphate synthase, large subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 1079 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + ++V + D D + V ++A +PD Sbjct: 29 SGVQACKALREENYRVVLVNSNPATIMTDPDMANATYIEPIHWKVVHKIIAKERPDAMLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + IL+ + + A + ++ Q + G+ + S Sbjct: 89 TMGGQTALNCALDLNRKGILKDFGVEMIGATAHAIEQAENRQLFNQAMKKIGLDIPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 R D + P +I+ G + + H QLLIE+ Sbjct: 149 ASNMREAKDVVANVGFPCIIRSSFTLGGTGGGIAYSQIDFQEICERGFDLFHHGQLLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDNKDNCIIVCALENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPTTGQLIIIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 88/290 (30%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ I D D +V ++ +PD G Sbjct: 588 ALREEGYEAIMINCNPETVSTDYDMSERLYLEPVTIENVLDIVRIEQPDGVIIQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQH 122 + + I T + A + ++ ++ P ++ + Sbjct: 648 LKLALALEAAGVPIIGTKPDAIDRAENRERFQNLINYLGLKQPPNATVTSIEMAVEKVAT 707 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + +I + + + ++ S + ++ + + V Sbjct: 708 IGGYPLMVRPSYVLGGQAMNIIYNEMDLMISFQKAFSISVHKTPVLIEKFIDDAIEVDVD 767 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241 I + + S +S LP + +I +E++R + Sbjct: 768 AICDGKTVLIGG--IMEHIEQAGIHSGDSACSLPTYTMNHNIKEEIRRQVKKIALELQVI 825 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F V+ +E+N + T P ++ G + ++ Sbjct: 826 GLINVQFAI--KKNDVYLIEVNPRAART----VPFVSKAIGVALAKVATK 869 >gi|332158139|ref|YP_004423418.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2] gi|331033602|gb|AEC51414.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2] Length = 1059 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 96/311 (30%), Gaps = 41/311 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G + ++ + + V V+ KPD Sbjct: 24 SGSQALKALKEEGIETILVNPNVATIQTSHEMADRVYLLPLDVKFVEKVIKKEKPDGILL 83 Query: 57 VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G +++ T + AL K R + + +P + Sbjct: 84 GFGGQSALSLGVALYESGILDKYGVKVLGTPIEGIKKALDRGKFRKTMMKAGLPIPPSGA 143 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +++ G V + ++++ + + ++L+E+ Sbjct: 144 AKSVEEAIEIAEKIGFPVIVRVSFNLGGRGSFVAWNREEFENYIIRAFAQSEIGKVLVEK 203 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ +AV + + ++ + + Y+ ++ Sbjct: 204 YLYHW-KEIEFEVVRDKKGNAVAVACLENFDPMGVHTGDSIVIAPCQTLTNREYQMLRNA 262 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 A +AI G +P S + + +E N P M+ S +P A Sbjct: 263 AIKVAEAIDLIGECNVQLALNPKSEEFYVIETN--PRMSRSSALASKVTGYPLAYIAAKL 320 Query: 280 YAGYSFRELLL 290 GY+ ELL Sbjct: 321 ALGYTLDELLN 331 >gi|330807472|ref|YP_004351934.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375580|gb|AEA66930.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1073 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G++ + D D V ++ KP G Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S ++ + P +P I E++ +G G Sbjct: 767 SDGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|323703501|ref|ZP_08115147.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum nigrificans DSM 574] gi|323531492|gb|EGB21385.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum nigrificans DSM 574] Length = 1074 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 32/293 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNV 57 G AL++ G KV + D+ S+ ++A +PD Sbjct: 30 GTQACKALKEEGIKVVLVNSNPATIMTDGDIADKVYIEPLTWESLEKIIAKERPDGLLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + + ILE ++ + + + D+ ++ + VP Sbjct: 90 LGGQTGLNLAVELSERGILEKYQVALLGTSLETIKRAEDRELFKATMLEIGEPVPESTIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G +++ +Q + + + +Q+L+EQ Sbjct: 150 STVEECIAFANQIGYPLIVRPAYTLGGTGGGIVRNEQELVAVCHRGLKMSMINQVLLEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + D + + + Y+ ++ A Sbjct: 210 VAGWKEIEYEVMRDNADNCITICNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +A+ G F DP S K +E+N P ++ S + GY Sbjct: 269 LKIIRALKVAGGCNVQFALDPHSMKYIVIEVN--PRVSRSS--ALASKATGYP 317 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 84/271 (30%), Gaps = 17/271 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ +P+ G + + + I T + Sbjct: 608 DKLYFEPLTV---EDVMNIIDKERPNGVVVQFGGQTAINLAGELAAMGVNILGTPVEGID 664 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +A +K + + P +++P + ++ Sbjct: 665 AAEDREKFEKLLKNLGIPQTEGKTATTVEQARQIARELGFPVLVRPSYVLGGRAMEIVHN 724 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L+++YV G E+ +GD + + + Sbjct: 725 EDQLLKYMSSAVQVSPKHPVLVDKYVRGKEVEVDAIGDGQHIFIPGIMEHIERAG---VH 781 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263 S + P + + V +A+ G+ ++ +V+ LE+N Sbjct: 782 SGDSIAVYPPQSLTKREKELVVDYTVRIGEALKICGLMNIQYVVGE--GEVYVLEVNPRA 839 Query: 264 --VQPGMTPVSIFPEMAAYA----GYSFREL 288 P ++ V+ P + G+S EL Sbjct: 840 SRTVPILSKVTGVPMVQTATRCMLGHSLAEL 870 >gi|164686618|ref|ZP_02210646.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM 16795] gi|164604347|gb|EDQ97812.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM 16795] Length = 1068 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 89/292 (30%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL + + D D V ++ KP+ G Sbjct: 580 CIKALRKLDIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K + P ++ + Sbjct: 640 QTAIKLAKFLDEKNIPILGTDFADIDAAEDREKFDELLEKLNINRPKGIAVWSTEEGVKH 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P G+ + + + L + + + +LI++Y+ G E+ Sbjct: 700 ASEIGYPVLVRPSYVLGGQGMEITYNEAKLKAYLDSAFERDSKNPVLIDKYLVGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P I DI ++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSITMYPSQNISDDIKAKILDYTKRISLELN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFKGELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 94/318 (29%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + ++ V+ +PD Sbjct: 29 SGTQACEALKEEGVEVVLINSNPATIMTDKEVAHKIYIEPLTIEAIEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + V+ +++ T + D+ R + V Sbjct: 89 GMGGQTALNLAVELADAGILDKYGVKVIGTSIKSIKKGEDRDEFREMMRSINQPVIESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + L + Q+LIE+ Sbjct: 149 VTNLEDGIIYAEKIGYPVIIRPAYTLGGTGGGIAENKEELIEILTHGLQLSPVTQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + Y+ ++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDKEYQLLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G P + +EIN P ++ S + GY ++ Sbjct: 268 SIEIINAIEVKGGCNVQIALHPHRLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|91792356|ref|YP_562007.1| carbamoyl phosphate synthase large subunit [Shewanella denitrificans OS217] gi|91714358|gb|ABE54284.1| carbamoyl-phosphate synthase large subunit [Shewanella denitrificans OS217] Length = 1075 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++A L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALQLEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLDCPRAGI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 MD + ++ P +I+P G + + Q + ++LLI++ Sbjct: 149 AHNMDEAYGVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTNELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + + P ++ + Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLNMKQPENATVTTVESAVIEGEK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + ++ Q + ++ S ++ +L++ ++D IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + + P + I E++ +G G Sbjct: 767 CDGETVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVSKLAFELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866 >gi|28379200|ref|NP_786092.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum WCFS1] gi|29337221|sp|P77886|CARB_LACPL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|28272038|emb|CAD64943.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Lactobacillus plantarum WCFS1] Length = 1058 Score = 63.4 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 89/293 (30%), Gaps = 30/293 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A D+ + P + + Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++KK + + + +H +L++ Y+ G E + Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + ++ A+ C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + F+ +V+ +E+N + T P ++ ++ + D Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAILD 862 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ ++V ++ + V +L PD Sbjct: 29 SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ ++ VP Sbjct: 89 TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + Q + + + Q+LIEQ Sbjct: 149 ARTVDEALAFAKQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|308181401|ref|YP_003925529.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046892|gb|ADN99435.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1058 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A D+ + P + + Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++KK + + + +H +L++ Y+ G E + Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + ++ A+ C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ ++V ++ + V +L PD Sbjct: 29 SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ ++ VP Sbjct: 89 TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + Q + + + Q+LIEQ Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|300768577|ref|ZP_07078476.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493884|gb|EFK29053.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1058 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A D+ + P + + Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++KK + + + +H +L++ Y+ G E + Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + ++ A+ C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ ++V ++ + V +L PD Sbjct: 29 SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ ++ VP Sbjct: 89 TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + Q + + + Q+LIEQ Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|254557332|ref|YP_003063749.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum JDM1] gi|1514603|emb|CAA91005.1| carbamoyl-phosphate synthase [Lactobacillus plantarum] gi|254046259|gb|ACT63052.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum JDM1] Length = 1058 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A D+ + P + + Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++KK + + + +H +L++ Y+ G E + Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + ++ A+ C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ ++V ++ + V +L PD Sbjct: 29 SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ ++ VP Sbjct: 89 TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + Q + + + Q+LIEQ Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|212639971|ref|YP_002316491.1| carbamoyl phosphate synthase large subunit [Anoxybacillus flavithermus WK1] gi|212561451|gb|ACJ34506.1| Carbamoylphosphate synthase large subunit [Anoxybacillus flavithermus WK1] Length = 1034 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 51/311 (16%), Positives = 100/311 (32%), Gaps = 41/311 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + + S+ ++A +PD Sbjct: 29 SGTQGCLALKEEGYRVILANNNPATIMTDEVHADAVYFEPLTVESIEKIIAKERPDGLLA 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I + D+ R+ + VP Sbjct: 89 TLGGQTGLNLAFALHERGILQKYNVRLLGTPIESIQRGEDREAFRALMYELNEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + + Q L+E+ Sbjct: 149 VTTVEEAVQFAKQIGFPIIVRPAYTLGGTGGGIAETMDELVDIVTKGLQESPITQCLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I + + ++ + + Y ++ Sbjct: 209 SVAG-FKEIEYEVMRDHTNTCITICNMENIDPVGIHTGDSIVVAPSQTLTDVEYHMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279 A A+G G F DP S+K + +E+N P ++ S +P A Sbjct: 268 AIKIISALGVVGGCNIQFALDPKSKKYYLIEVN--PRVSRSSALASKATGYPIARMAAKL 325 Query: 280 YAGYSFRELLL 290 GY+ EL+ Sbjct: 326 AVGYTLAELIN 336 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 85/294 (28%), Gaps = 41/294 (13%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ AG++ I+ + V V+ + G Sbjct: 583 ALQQAGYEAILINNNPETVSTDFTVADRLYFEPLTVEDVLNVVEAENVEAVIVQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I +S + ++ + Sbjct: 643 INLASKLEAYGVSIIGMNSDTIDQLEDRERFYTLLQSLDIPHVKGAMANDETELWRKVEE 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ ++ Q + + Q + +LI++YV E + Sbjct: 703 IGYPLLLRPSYVIGGRGMHIVHDKQQLSALVEQGIVY----PVLIDEYVRAKEGELDAIC 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + + + +++ + + +G+ Sbjct: 759 DGYDAFVPTIIEHVEKTG---VHSGDSYALLPAQSFTKEEKEKMIDYTKRITKKLYFKGL 815 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ +V+ LE+N + T P ++ G MV+ A+ Sbjct: 816 MNVQFIV--RDGEVYVLEVNPRASRT----VPVVSKVTGVP-------MVQHAT 856 >gi|20807298|ref|NP_622469.1| carbamoylphosphate synthase large subunit (split gene in MJ) [Thermoanaerobacter tengcongensis MB4] gi|22095499|sp|Q8RBK0|CARB_THETN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|20515809|gb|AAM24073.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Thermoanaerobacter tengcongensis MB4] Length = 1072 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V + D D V ++A +PD Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKIIAKERPDGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEAGILDKYNVKLLGTSVESIKTAEDRELFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPAQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A+ G F DP S K + +E+N P ++ S + GY Sbjct: 268 SIKIIRALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYP 317 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 14/263 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + + ++I T + Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNEVKILGTSFKSID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D + P +++P + + Sbjct: 663 ISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERTGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLTEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P M+ G +L Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855 >gi|328760626|gb|EGF74193.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL099PA1] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|325285852|ref|YP_004261642.1| ATP-grasp fold domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321306|gb|ADY28771.1| ATP-grasp fold domain protein, DUF201-type [Cellulophaga lytica DSM 7489] Length = 347 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 56/332 (16%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64 GG S SG A L + K+ + +D + S+ L D F Sbjct: 24 GGYS-------DSGADIACELHNNNIKISTPVD-NPSIENNL-----DWVFPDTEEGIQN 70 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------- 113 A + L + + +++ Q+ S + Sbjct: 71 AINKGATVFWLNTVLYKTHPIEKFFNLNNYFVGQLPSVVDIYDDKWTTNKLLKENGILIP 130 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLI 168 + P V+KP++G S G+ ++K ++ + L S +G + + Sbjct: 131 ETTLITEGDTINYKGDFPIVVKPIRGRGSQGVSLVKNEKELNAKLSSLFLSKQYGTSVYL 190 Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---------- 218 EQ++ G E+T VM S + + + + + P Sbjct: 191 EQFLSGQEITITVMPSGSYIINNNKKQFTTAWCLPPVKRFNHQNGIAPYNGTVAVIKNSA 250 Query: 219 ------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--- 269 + V + A + + + R D D + ++N++P MT Sbjct: 251 LLDNSERNSNQIIAVCKQCEKAAELLHIKAPIRIDCRADEKGN-YYLFDVNMKPNMTGPS 309 Query: 270 ------PVSIFPEMAAYAGYSFRELLLWMVED 295 S+ A G+++ +LL M+ Sbjct: 310 RPQRKNQDSLSSLAARGIGWNYFDLLKNMLNQ 341 >gi|315084350|gb|EFT56326.1| carbamoyl-phosphate synthetase large chain, oligomerisation domain protein [Propionibacterium acnes HL027PA2] Length = 590 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|313818526|gb|EFS56240.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL046PA2] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVSPPQRMSQHVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|313637314|gb|EFS02805.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri FSL S4-171] Length = 1064 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.6 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNIIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|313632744|gb|EFR99713.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri FSL N1-067] Length = 1070 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.6 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNIIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|301055377|ref|YP_003793588.1| carbamoyl-phosphate synthase large subunit [Bacillus anthracis CI] gi|300377546|gb|ADK06450.1| carbamoyl-phosphate synthase large subunit [Bacillus cereus biovar anthracis str. CI] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|326789550|ref|YP_004307371.1| urea carboxylase [Clostridium lentocellum DSM 5427] gi|326540314|gb|ADZ82173.1| urea carboxylase [Clostridium lentocellum DSM 5427] Length = 1197 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AKKIGYPVILKSTAGGGGIGMRICYSFKELKEAYEGVCYLAAANFNNAGVFLEKYIEKSR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239 + ++ + PA + + A + Sbjct: 207 HVEVQIFGNAYGEAVALGERDCSVQRRNQKVVEESPAPNLPEKVRAAMYKAAEDLAKEAS 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +FL+D K ++LE+N + G+T G +L+ WM+++ Sbjct: 267 YQSAGTVEFLYDEAEEKFYFLEVNTRLQVEHGITE--------EVLGL---DLVSWMIKE 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|289435178|ref|YP_003465050.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171422|emb|CBH27966.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1070 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 42.6 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|289427092|ref|ZP_06428808.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes J165] gi|289159561|gb|EFD07749.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes J165] gi|313772127|gb|EFS38093.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL074PA1] gi|313807482|gb|EFS45969.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL087PA2] gi|313809991|gb|EFS47712.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL083PA1] gi|313820293|gb|EFS58007.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL036PA1] gi|313822899|gb|EFS60613.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL036PA2] gi|313825168|gb|EFS62882.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL063PA1] gi|313830319|gb|EFS68033.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL007PA1] gi|313833694|gb|EFS71408.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL056PA1] gi|314925179|gb|EFS89010.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL036PA3] gi|314960037|gb|EFT04139.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL002PA2] gi|314973324|gb|EFT17420.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL053PA1] gi|314976002|gb|EFT20097.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL045PA1] gi|314978460|gb|EFT22554.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL072PA2] gi|314983978|gb|EFT28070.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL005PA1] gi|314988161|gb|EFT32252.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL005PA2] gi|314989965|gb|EFT34056.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL005PA3] gi|315085691|gb|EFT57667.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL002PA3] gi|315088888|gb|EFT60864.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL072PA1] gi|315096239|gb|EFT68215.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL038PA1] gi|327326152|gb|EGE67942.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL096PA2] gi|327331972|gb|EGE73709.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL096PA3] gi|327443174|gb|EGE89828.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL013PA2] gi|327445961|gb|EGE92615.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL043PA2] gi|327448060|gb|EGE94714.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL043PA1] gi|328753505|gb|EGF67121.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium acnes HL020PA1] gi|332675400|gb|AEE72216.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes 266] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ DR V +L +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + E+ T + A D + VP + Sbjct: 90 LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +++P G + + + + + + + LIEQ Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + M D T + +F + ++ ++ ++ + Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G DP S + + +E+N P ++ S + GY ++ Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +PD G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + S + + Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++ + + + + + +L+++Y++G+E + Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P ++ + + + + + +G Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815 Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ DP + + V+ +E N + T P ++ G S E+ ++ Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866 >gi|228935202|ref|ZP_04098028.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824367|gb|EEM70173.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 81/259 (31%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93 V ++ +PD L G G + V+ +EI T + A D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 R+ + P I I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229031518|ref|ZP_04187518.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271] gi|228729807|gb|EEL80787.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229197998|ref|ZP_04324712.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293] gi|228585477|gb|EEK43581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|254411813|ref|ZP_05025589.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes PCC 7420] gi|196181535|gb|EDX76523.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes PCC 7420] Length = 340 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 23/282 (8%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 I + ++ + DL + L ++ + L Sbjct: 66 AKPISLAEAIQW-ITTQNIDLVLP----QMFCIPGMTHYRGLFDLLNIPYVGNKAELMAL 120 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + + + PP VIKP +SLG+ +++ Sbjct: 121 TAHKAKAKAIVAAAGVKVPYGELLHQGDTPNLMPPVVIKPANSDNSLGVTLVRNMADYDE 180 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS---- 208 L Q+ + + L+ + G E+ CG + S + Sbjct: 181 ALTQAFHYA-DEVLVEDYIELGREVRCGTFVKNGTLIGLPLEEYSVNTQNHPIRNYSDKL 239 Query: 209 ------------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 N+ I +VQ +A H+A+GCR S DF DP + Sbjct: 240 KKTETGELTCAAKNNEKAWIVDTTDPITTKVQDVAKQCHKALGCRHYSLFDFRIDPQ-GQ 298 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 ++LE + +P S+ MA AG S ELL + +A Sbjct: 299 PWFLEAGLYCSFSPKSVVACMAKAAGISVDELLKTAIAEALI 340 >gi|306827566|ref|ZP_07460847.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes ATCC 10782] gi|304430218|gb|EFM33246.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes ATCC 10782] Length = 1058 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P ++ I + + + C G Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G ++ ++ Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+KV ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110 L G + A+ + + +L + L D + +P Sbjct: 90 L-GAQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + ++ + + Q LIE+ Sbjct: 149 VKTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + +F + ++ + ++ Sbjct: 209 SIAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|254445945|ref|ZP_05059421.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae bacterium DG1235] gi|198260253|gb|EDY84561.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae bacterium DG1235] Length = 1079 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 90/303 (29%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + DV +V ++A +PD Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTIDAVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAIL--ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 L G + ++ L E G A+ + R + + + + Sbjct: 89 TLGGQTALNLSLELEAAGILHEYGVEMIGAKPDAIKKGEDRELFKEAMLKIGLDVAHSRT 148 Query: 115 RFTMDSQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +++ + P +I+P G + + + + ++L+E Sbjct: 149 VNSLEEARSAAKEIGGFPLIIRPSFTMGGSGGGIAYNREEFEDIVSNGLELSPVHEVLVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + +F + + + Sbjct: 209 ECLLGWKEYEMEVMRDRKDQCVVICSIENFDPMGVHTGDSITVAPAMTLSDREYQAMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 SFAVIREIGVETGGSNIQFSLCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 64/175 (36%), Gaps = 8/175 (4%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + ++ P +++P G+ ++ + + ++ + +L++++++ Sbjct: 703 YEMADVVGFPLLLRPSFVLGGRGMFIVHTMDEMKAVIREAFDASPDKPVLLDKFLEDAIE 762 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + + Y +S + + P + ++ + V++ +F +A Sbjct: 763 LDVDCISDGETSIIGGM--LEHIEYAGVHSGDAAMVLPPHTLGKEMIETVRQASFRLAKA 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G+ F +++ LE+N + T P ++ G ++ + Sbjct: 821 LKVVGLMNIQFAI--KDDELYVLEVNPRASRT----VPFVSKAIGVPLAKVAAKI 869 >gi|330813714|ref|YP_004357953.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter sp. IMCC9063] gi|327486809|gb|AEA81214.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter sp. IMCC9063] Length = 1071 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56 SG AL+ G+KV I D + + + KPD Sbjct: 29 SGTQACKALKKEGYKVILINSNPATIMTDPNVADKTYIEPITSEILEEIIKIEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + IL+ I + A + D+ + K+ ++ G+ S++ Sbjct: 89 TMGGQTGLNAAMLLHKNGILKKYNIELIGANAEAIDKAEDRQKFKKHMNEIGLESARSLI 148 Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I+ P +I+P G V ++ L S + ++L+E+ Sbjct: 149 CTSIDQAKKILEEINLPVIIRPSFTLGGTGGGVANTEEEYLKILKNGLSLSPTHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLVGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSMTVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IDCLRKIGVETGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 64/172 (37%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P VI+P + +I D+ + + ++ + + +L++++ D IE+ Sbjct: 707 AKKIKYPLVIRPSYVLGGRAMEIIHDDEQLTRYIQEAVKVSGNNPVLLDRFLNDAIEVDV 766 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + ++ + P + +I EV++ +IG Sbjct: 767 DAICDGENVFVSGVMEHIEEAGIHSG---DSACCIPPYSLSEEIINEVKKQTKKLATSIG 823 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F + ++ LE+N + T P ++ + S ++ Sbjct: 824 VVGLINIQFAI--QDKNIYVLEVNPRASRT----VPFVSKASNISVAKIATK 869 >gi|304404040|ref|ZP_07385702.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus curdlanolyticus YK9] gi|304347018|gb|EFM12850.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus curdlanolyticus YK9] Length = 1070 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 95/293 (32%), Gaps = 32/293 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + GF+V I+ + V ++ KPD Sbjct: 30 GTQACQALMEEGFEVVLINSNPATIMTDTNMAHKVYIEPITLEFVSQIIRQEKPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ E +++ T + A D R VP + Sbjct: 90 LGGQTGLNMAVELARAGVLERENVKLLGTQLDAIERAEDRDLFRELMRELEQPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + ++ + + ++ +Q LIE+ Sbjct: 150 TTVEEAVDFANEIGYPIIVRPAYTLGGTGGGICANEEELLETVASGIRYSPINQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +A+ G F DP S + + +E+N P ++ S + GY Sbjct: 269 LKIIRALSIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYP 317 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 91/290 (31%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEQPIGVIVQFGGQTA 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I + + +A K + + P ++ + Sbjct: 648 INLAAPLAKAGVRILGSSLESIDAAEDRKKFEAMLRKLNIAQPEGSTVTNVDEAVAVAQG 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ D + L + ++ N +LI++Y+ G E + Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLLYMKEAVKINPEHPVLIDRYMLGKEAEVDAIC 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + DI +++ + + + G+ Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQSLSDDIKQQIIDITIKIAKELQVIGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ KV+ +E+N + T P ++ L + Sbjct: 825 VNIQFVIHEE--KVYVIEVNPRSSRT----VPFLSKVTNLPMANLATKAI 868 >gi|170695454|ref|ZP_02886599.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis C4D1M] gi|170139645|gb|EDT07828.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis C4D1M] Length = 1084 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 87/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLHAHGVLTKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMEEALSVQADIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|163750536|ref|ZP_02157774.1| D-alanine--D-alanine ligase [Shewanella benthica KT99] gi|161329691|gb|EDQ00680.1| D-alanine--D-alanine ligase [Shewanella benthica KT99] Length = 295 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 18/284 (6%) Query: 28 DAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSG 83 AG+ V+ + V R + +P L + + D + I +T S Sbjct: 3 KAGYAVNLNLCVSREDLDEIVARQPSLVVLAVKYIPLDNENDIWLADYFADHGINFTGSS 62 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKP---LKGGSS 138 +K+ +K +S+ G+ ++H I+ P +KP G Sbjct: 63 RDVLDFDSNKVSAKDHLSAKGIATARYFTAIPGQYKNEHELPITFPLFLKPLDAANGNGV 122 Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198 + + S L+E+Y+ G E T ++ ++ + + Sbjct: 123 DDSSFVTNFLEF-EAKIASLDKEFNHPTLVEEYLPGREFTVAIIQASNGQLLVSPIELVP 181 Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-----FLAHQAIGCRGISRSDFLFDPL 253 S ++ I + + +G R R D + Sbjct: 182 PESKNGLRILGAKVKKDDSEELKKIDDDAMKTRVKALAIECFVHLGVRDYGRID-ILADK 240 Query: 254 SRKVFWLEINVQPGMTP-VSIFPEMAA-YAGYSFRELLLWMVED 295 S + F++E N+ PGMT S FP ++ E++ ++E Sbjct: 241 SGQCFFIEANLVPGMTSGSSYFPLACEIEHQLTYDEVVNLIIEQ 284 >gi|88812985|ref|ZP_01128228.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Nitrococcus mobilis Nb-231] gi|88789763|gb|EAR20887.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Nitrococcus mobilis Nb-231] Length = 1073 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + R+V V+A +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPQTADRVYIEPINWRTVASVIARERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D +L+ + + A + D+ + ++ G+ + Sbjct: 89 TMGGQTALNCALDLAKHGVLDEYRVEMIGARQAAIDKAEDREAFRTAMADIGLLTPRARI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +++L+E+ Sbjct: 149 AHSREEALQVQAQIGFPTIIRPSFTLGGSGGGIAYNREEFVEIVECGLDLSPTNEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + S + + + Sbjct: 209 SVLGWKEYELEVVRDHSDNCIIICSIENVDSMGIHTGDSITVAPAQTLTDKEYQLMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 269 IAVLREIGVETGGSNVQFAVNPANGQMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 102/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39 + VL GG + G+ +AL + G++ + D D Sbjct: 561 IIVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYESIIVNCNPETVSTDYDTSD 613 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++ +P G I T + A Sbjct: 614 RLYFEPLTLEDVLEIVEKEQPSGVIVQYGGQTPLKLARALEAYGAPIIGTSPESIDLAED 673 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P S + +D I P V++P + ++ +D + Sbjct: 674 RERFQHLISQLGLQQPPNRSAVAVEQALDLARQIGYPLVVRPSYVLGGRAMEIVYEDADL 733 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ + +L+++++D V DA D ++ + + + S + Sbjct: 734 LQYMREAVKVSPEAPVLLDRFLDD---AVEVDVDAVCDGHDVLIGGIMEHIEQAGVHSGD 790 Query: 211 STHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S LPA I + ++ L +G G+ + F +++ LE+N + T Sbjct: 791 SACSLPAYTLSATIGERLREQVRLLAIKLGVIGLMNTQFAI--KDDEIYLLEVNPRASRT 848 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P +A G + ++ Sbjct: 849 ----VPFVAKATGLALAKIAAR 866 >gi|119944658|ref|YP_942338.1| carbamoyl phosphate synthase large subunit [Psychromonas ingrahamii 37] gi|119863262|gb|ABM02739.1| carbamoyl-phosphate synthase large subunit [Psychromonas ingrahamii 37] Length = 1076 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V + D D + V ++A +P Sbjct: 29 SGAQACKALKEEGYRVVLVNSNPATIMTDPDMADATYIEPIHWQVVEKIIAKERPCAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + IL + + A + D+ R + G+ + + Sbjct: 89 TMGGQTALNCALELEAKGILAKYNVEMIGATADAIDKAEDRSRFDTAMKKIGLACPRAGI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + +LLI++ Sbjct: 149 AHNMDEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFDDICTNGLDLSPTTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGINPEDGRMVLIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ KP G + I T + Sbjct: 613 DRLYFEPITL---EDVLEIVRVEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPEAID 669 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P ++ ++S I P V++P + ++ Sbjct: 670 RAEDRERFQQVVERLGLKQPENDTVTTLEQAVESAKHIGYPLVVRPSYVLGGRAMEIVYD 729 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + S ++ +L+++++D V DA D T++ + + + Sbjct: 730 EVDLRRYFKDAVSVSNESPVLLDRFLDD---AIEVDIDAICDGTDVVIGAIMEHIEQAGV 786 Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S LPA ++I E++ +G G+ + +V+ +E+N + Sbjct: 787 HSGDSACSLPAYTLSVEIQDEIRGYIRSLALELGVIGLMNTQLAV--KDNEVYMIEVNPR 844 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G ++ Sbjct: 845 AART----VPFVSKATGVPIAKI 863 >gi|148259922|ref|YP_001234049.1| carbamoyl phosphate synthase large subunit [Acidiphilium cryptum JF-5] gi|326403124|ref|YP_004283205.1| carbamoyl-phosphate synthase large subunit [Acidiphilium multivorum AIU301] gi|146401603|gb|ABQ30130.1| carbamoyl-phosphate synthase large subunit [Acidiphilium cryptum JF-5] gi|325049985|dbj|BAJ80323.1| carbamoyl-phosphate synthase large subunit [Acidiphilium multivorum AIU301] Length = 1081 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEMVEKIIIKERPDAVLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + LE + + + D+++ + ++ G+ S + Sbjct: 89 TMGGQTALNTAMALAKAGTLEKHGVELIGARAEVIDRAEDRLKFRDAMAEIGIESPRSAI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L+ P VI+P G + + + + ++LIE+ Sbjct: 149 AHTMDEARAALDLVGLPAVIRPSFTLGGTGGGIAYNREEFLEIVAGGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDQADNCIIVCSIENIDPMGVHTGDSVTVAPALTLTDREYQLMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLRKIGVDTGGSNVQFGINPADGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 10/167 (5%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 I P VI+P + ++ S+ + ++ + + +LI++Y D IE+ Sbjct: 712 RIGFPVVIRPSYVLGGRAMEIVYDLASLRRYMREAVVVSGTNPVLIDRYLNDAIEVDVDC 771 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + ++ + P + I E++ +A+ Sbjct: 772 IADGQSVYVAGVMEHIEEAGIHSG---DSACSLPPYSLSPAIVAELRAETEAMAKALNVI 828 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F V+ LE+N + T P +A G ++ Sbjct: 829 GLMNVQFAI--QGENVYVLEVNPRASRT----VPFVAKATGVPVAKI 869 >gi|325265118|ref|ZP_08131844.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5] gi|324029522|gb|EGB90811.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5] Length = 1072 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + IL+ ++ + A D++ K+ ++ G+ + S Sbjct: 89 NLGGQSGLNLCSELAAEGILDKYKVEVIGVQVDAIERGEDRIEFKKAMNELGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P V++P G ++ + + + Q+L+E+ Sbjct: 149 AYTVEEALDIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I + K +Q Sbjct: 209 SILGWEELELEVVRDKENNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQDQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYRIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R +P + + Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFREMMEKLQIPMPESGMAVNVEEAISIAQN 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDKSMANYMAAAVGVTPDRPILIDRFLN---HALECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P+ + K ++ + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISEENVKTIKDYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + + KV+ LE N + T P ++ L ++ Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862 >gi|208780074|ref|ZP_03247417.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida FTG] gi|208744078|gb|EDZ90379.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida FTG] Length = 1094 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|118496635|ref|YP_897685.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. novicida U112] gi|194323942|ref|ZP_03057717.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. novicida FTE] gi|118422541|gb|ABK88931.1| carbamoyl-phosphate synthase large chain [Francisella novicida U112] gi|194321839|gb|EDX19322.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. novicida FTE] Length = 1094 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|255327149|ref|ZP_05368224.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa ATCC 25296] gi|255295767|gb|EET75109.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa ATCC 25296] Length = 1106 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + + ++ KPD Sbjct: 29 SGTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKIIEKEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + +L + + I A L D+ K VV G S+ Sbjct: 89 TLGGQTALNAAISLDERGVLSKYNVELIGANIEAINLGEDREAFKGVVERAGGESARSVI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P V++P LG + ++ + ++ ++L+E+ Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M + D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDTNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREFQKLRDIA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 INVIREVGVDTGGCNIQFAIDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|47096556|ref|ZP_00234146.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes str. 1/2a F6854] gi|254831564|ref|ZP_05236219.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes 10403S] gi|254899468|ref|ZP_05259392.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes J0161] gi|254912393|ref|ZP_05262405.1| carbamoyl-phosphate synthase [Listeria monocytogenes J2818] gi|254936720|ref|ZP_05268417.1| carbamoyl-phosphate synthase [Listeria monocytogenes F6900] gi|47015088|gb|EAL06031.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609317|gb|EEW21925.1| carbamoyl-phosphate synthase [Listeria monocytogenes F6900] gi|293590375|gb|EFF98709.1| carbamoyl-phosphate synthase [Listeria monocytogenes J2818] Length = 1070 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A + R VP I Sbjct: 90 LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + Q + + + Q L+E+ Sbjct: 150 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNGQELIETVTSGLKLSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAITVATD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 760 DGVNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSIQVKNTIVDYTTRLATGLNIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853 >gi|194290080|ref|YP_002005987.1| carbamoyl phosphate synthase large subunit [Cupriavidus taiwanensis LMG 19424] gi|193223915|emb|CAQ69924.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Cupriavidus taiwanensis LMG 19424] Length = 1082 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++ +PD Sbjct: 29 SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAVAVQARIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + E++R +A+ G Sbjct: 772 CDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 829 LMNVQFAIQQNNGVDTVYVLEVNPRASRT----VPYVSKATGMQLAKIAAR 875 >gi|291536829|emb|CBL09941.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis M50/1] gi|291539132|emb|CBL12243.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis XB6B4] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++A KPD Sbjct: 30 GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKIIAKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ LE + + + D+ K + G P S + Sbjct: 90 LGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + I P V++P G + + + L + ++L+E+ Sbjct: 150 HNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 82/256 (32%), Gaps = 13/256 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD A G + L + + + + D+ ++ Sbjct: 617 EDVESIVKLEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDEI 674 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + +P + + + + P +++P G+ + D I + Sbjct: 675 LEKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDDEIEEFIGII 734 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +L+++Y+ G E+ + D + + + + S + Sbjct: 735 NRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGVHSGDSISVYPAPTIS 794 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + QA+ G+ F+ + +V+ +E+N + T P + Sbjct: 795 DHVKET---IVEYTKRLAQALHVIGLINIQFI--AMDEQVYVIEVNPRSSRT----VPYI 845 Query: 278 AAYAGYSFRELLLWMV 293 + G +L ++ Sbjct: 846 SKVTGIPIVDLATKVI 861 >gi|240143309|ref|ZP_04741910.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis L1-82] gi|257204679|gb|EEV02964.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis L1-82] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++A KPD Sbjct: 30 GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKIIAKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ LE + + + D+ K + G P S + Sbjct: 90 LGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + I P V++P G + + + L + ++L+E+ Sbjct: 150 HNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 82/256 (32%), Gaps = 13/256 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD A G + L + + + + D+ ++ Sbjct: 617 EDVESIVKLEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDEI 674 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + +P + + + + P +++P G+ + D I + Sbjct: 675 LEKTQIPRAAGGTVYTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDDEIEEFIGII 734 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +L+++Y+ G E+ + D + + + + S + Sbjct: 735 NRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGVHSGDSISVYPAPTIS 794 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + QA+ G+ F+ + +V+ +E+N + T P + Sbjct: 795 DHVKET---IVEYTKRLAQALHVIGLINIQFI--AMDEQVYVIEVNPRSSRT----VPYI 845 Query: 278 AAYAGYSFRELLLWMV 293 + G +L ++ Sbjct: 846 SKVTGIPIVDLATKVI 861 >gi|308270123|emb|CBX26735.1| Carbamoyl-phosphate synthase large chain [uncultured Desulfobacterium sp.] Length = 1073 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D V +++ PD Sbjct: 29 SGTQACKALKEDGYEVVLVNSNPATIMTDPDMAHRTYIEPVTPEIVAMIIEKEHPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + +LE + + I + + D+ ++ ++ G+ + S + Sbjct: 89 TLGGQTGLNTAIEVAKMGVLEKFGVEMIGASIESINKAEDRDLFRKAMNRIGLRIPESGI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M + I P +++P G V + + + + Q+++E+ Sbjct: 149 ATNMEMAIKIVDTIGFPVIVRPSFTLGGTGGGVAYNFEDLEIIAKSGFDASLIGQIMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + K Sbjct: 209 SVLGWKEYELEVMRDKNDNVVIICSIENMDPMGIHTGDSITVAPAQTLTDAEYQKMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P++ + +E+N P ++ S + G+ ++ Sbjct: 269 LAIMREIGVDTGGSNVQFAVNPVNGDMIVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +++P + ++ + + + + +LI+++ + +E+ Sbjct: 707 AESIGYPVILRPSFVLGGRAMKIVYNRKDLENFTRIAIEASPVHPVLIDKFLEEAVEVDV 766 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + + +S ++ + P I DI ++ + Sbjct: 767 DAISDGKATIICGIMEHIEAAG---VHSGDSACVLPPHSISKDIIDQITSATKAMATELK 823 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ + K++ LE+N + T P ++ G F +L Sbjct: 824 VIGLMNVQYAI--KGDKLYILEVNPRASRT----IPFVSKATGIPFAKLATK 869 >gi|292493677|ref|YP_003529116.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus halophilus Nc4] gi|291582272|gb|ADE16729.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus halophilus Nc4] Length = 1073 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L+ G++V ++ + +V +L +PD Sbjct: 29 SGAQACKSLKAEGYRVILVNSNPATIMTDPEMADATYIEPITWETVARILEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + ILE + + A + D+ + + G+ V S + Sbjct: 89 TMGGQTALNCALDLAREGILERYGVEMIGASEDAINKAEDRDLFRLAMQKIGLDVPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + +LLIE+ Sbjct: 149 AYSLEEAQQVQRDLGFPIIIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + Sbjct: 209 SVLGWKEFEMEVVRDCKDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGRLIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/289 (10%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A +P G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIALEQPKGVIIQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 I T + A ++ + P + + Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQRLIERLGFKQPPNRTARTQEEALRLADE 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 + P V++P + ++ + + ++ + ++ +L+++++ + IE+ + Sbjct: 707 VGYPLVVRPSYVLGGRAMEIVYNMDELNRYMREAVTVSNDSPVLLDRFLDEAIEVDVDAI 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + +++ + + + G Sbjct: 767 CDGERVIVGGIMEHIEQAG---VHSGDSACALPPFSLSAAVQDQLREQVYKMARELKVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F + ++ LE+N + T P ++ G ++ Sbjct: 824 LMNTQFAI--QANDIYVLEVNPRASRT----VPFVSKAIGVPLAKVAAR 866 >gi|270158807|ref|ZP_06187464.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae D-4968] gi|289166398|ref|YP_003456536.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae NSW150] gi|269990832|gb|EEZ97086.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae D-4968] gi|288859571|emb|CBJ13539.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae NSW150] Length = 1067 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVSWKEVARIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + + IL + + A + D+ + +Q++ G+ + S Sbjct: 89 TMGGQTALNCALDLVREGILAKYHVEMIGATREAIDRAEDREKFRQLMLKIGLDMPRSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q + P +I+P G + + ++ + +LLI++ Sbjct: 149 AHSMEEAIQVQARLGYPAIIRPSFTMGGSGGGIAYNREEFEEICMRGLELSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEFEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 89/263 (33%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ KPD G ++I T + Sbjct: 611 DRLYFEPVTL---EDVLAIVEVEKPDGVIVHYGGQTPLKLARALEANGVKIIGTSPDAID 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D+ + P ++ + + I P V++P + V+ + Sbjct: 668 RAEDRDRFQKLVTELKLHQPDNGTVRSEEEAIALANKIGYPLVVRPSYVLGGRAMEVVYQ 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 ++ + L + + ++ +L++++ D IE+ + D + + + Sbjct: 728 EEDLRHYLSHAVAVSNDSPVLLDKFLNDAIEVDIDAVCDGKEVLIGAVMEHIEQAGIHSG 787 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P + + + +++ +G G+ + F ++ LE+N + Sbjct: 788 ---DSACTLPPFSLSVVVQQDLMEQMRQMALKLGVVGLINAQFAIQADD--IYVLEVNPR 842 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G+ ++ Sbjct: 843 ASRT----VPFVSKATGFPLAKI 861 >gi|291612552|ref|YP_003522709.1| urea carboxylase [Sideroxydans lithotrophicus ES-1] gi|291582664|gb|ADE10322.1| urea carboxylase [Sideroxydans lithotrophicus ES-1] Length = 1207 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%) Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P +IK GG +G+ + + + Y++ Sbjct: 142 HAHAEASRIGYPVMIKSTAGGGGIGMRLCWSADELNEAFQSVERLARANFKDAGIYLEKY 201 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234 + + V ++ + P I ++ + + A Sbjct: 202 VEQARHIEVQLFGDGKGTVIALGERDCSVQRRNQKVIEETPAPNITPEVRQHLLETAVRL 261 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290 +A+G + +F+FD LS + ++LE+N + G+T G +L+ Sbjct: 262 GKAVGYQSAGTVEFVFDALSGEFYFLEVNTRLQVEHGVTE--------EVTGV---DLVE 310 Query: 291 WMVEDAS 297 WMV A+ Sbjct: 311 WMVLQAA 317 >gi|254520421|ref|ZP_05132477.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA] gi|226914170|gb|EEH99371.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA] Length = 1068 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDSEVADKIYIEPLTVEFLEKVIDKERPDSLLT 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVDLYEAGILDKYNVKVIGTSIQSIKEGEDRELFRNMMNRINEPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + + + + L + Q+L+E+ Sbjct: 149 ITDMEAGVTYATNIGYPVIVRPAYTLGGTGGGIAENEAELREILASGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F +P S + +EIN P ++ S + GY +L Sbjct: 268 AINIINAVGIEGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C +L+ G + ++ + V ++ PD G Sbjct: 580 CVKSLKKMGIETIIVNNNPETVSTDFNISDKLYFEPLTEEDVLNIIDKENPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++ T + + A +K P + ++ Sbjct: 640 QTAIKLANFLKEKGIKTLGTTADQIDMAEDREKFDDLLERLGIDRPKGKGVWNVEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +L+++Y+ G E+ Sbjct: 700 ARRLGFPVLVRPSYVLGGQGMEITHDEEELKYYLKNAFDKDKKNPILVDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P I DI +V AIG Sbjct: 760 AISDGEEILI----PGVMEHLERAGVHSGDSVTMYPSQNISSDIKDKVLDYTKKLALAIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ +++ +E+N P ++ VS P Sbjct: 816 INGMINIQFI--EFEGELYIIEVNPRASRTVPYISKVSKVP 854 >gi|330816263|ref|YP_004359968.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia gladioli BSR3] gi|327368656|gb|AEA60012.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia gladioli BSR3] Length = 1084 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHGEIAAITGGSGYPTVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPNDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V V+ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAAGVPIIGTSPDMIDAAEDRERFQKLLQELGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLARETVLELKRQTAAMARA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126] gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126] Length = 894 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 5/141 (3%) Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + LLIE +++G E +C V+ D + D + Y KY S + P Sbjct: 303 NSLLIESFIEGKEFSCIVIQDENERPIALPPTEIRKGKDVFDYRSKYLPGISRKITPIDA 362 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 P DI ++++ +A+ +R D KVF + N GM P S F AA Sbjct: 363 PQDIIEKIRSQCAALFKALQIDVYARIDGFITKE-GKVFLNDPNTTSGMLPSSFFFHQAA 421 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G + + L +++ + R Sbjct: 422 EIGLNPSQFLSYIIRTSLQAR 442 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 73/214 (34%), Gaps = 68/214 (31%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38 + + GG S ERE+S + G+ L + F I + Sbjct: 3 IGIFFGGQSREREISFAGGRTVYDNLNKSIFDAVPIFIDSKGHFVLLDWQYIYKGTIRDF 62 Query: 39 -------------------------DRSVGLVLAHLK-----------PDLAFNVLHGNF 62 D ++A + D AF LHG + Sbjct: 63 YPPVNFLPKSDLPVQIYAESLKNLSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHGPY 122 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----------PVCPSIL 112 GEDG +Q ILE IP++ +GIL SA+ + K+ +Q + G Sbjct: 123 GEDGNIQGILEWNGIPFSGAGILPSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNHQP 182 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + + + P VIK GSS+G+ ++ + Sbjct: 183 HENIYQNLKKELGLPLVIKAPHQGSSIGVSILNE 216 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 69/230 (30%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDA------------------------------- 29 + V+MGG S+ER +S+ SG+ L + Sbjct: 476 VGVIMGGFSTERHISVESGRNIYEKLSSSEKYLPIPIFLSGNEDQHELYVLPINIMLKDN 535 Query: 30 ---------GFKVSQI---------DVDRS----VGLVLAHLK-------PDLAFNVLHG 60 ++V I ++ +VL + D+ F LHG Sbjct: 536 ADDIKDKIQNYEVHPIISQIKFESSEITEKYVGIENIVLKKISYHDLPDIIDVTFIALHG 595 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119 GEDG VQA LE L IPY S + +S ++++K + +++ + G+ V LV Sbjct: 596 RPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISVADHRLVFENKWQS 655 Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161 + +S P + KP G S + IK + Sbjct: 656 NKEAEIAAIEEQLSYPLIAKPADDGCSSAVKKIKNKAELEAFAGMMFRPQ 705 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 236 QAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G +R D + +E+N PGMTP + A GY + + + Sbjct: 820 EVLNITGYARIDAFVRVYEDLSVETIIIEVNSLPGMTPATCIFHQTAINGYKPYDFIDKI 879 Query: 293 V 293 + Sbjct: 880 L 880 >gi|297583970|ref|YP_003699750.1| carbamoyl-phosphate synthase large subunit [Bacillus selenitireducens MLS10] gi|297142427|gb|ADH99184.1| carbamoyl-phosphate synthase, large subunit [Bacillus selenitireducens MLS10] Length = 1071 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + ++ +PD Sbjct: 30 GTQACQALKEEGYEVVLVNSNPATIMTDEETADRVYMEPLTVDFLSRIIRKERPDALLGT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + IL+ + + + + + D+ R+ VP + Sbjct: 90 LGGQTGLNLAVELFESGILDEYGVKLLGTEVESIRKAEDREAFRALMNELGEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G ++ + + + + +Q L+E+ Sbjct: 150 HSVEEARTFAESIGLPLIVRPAYTLGGTGGGIVNTMEELETIVYGGLKASPVNQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDKNDTAIVICNMENIDPVGVHTGDSIVMAPSQTLTDRDYQRLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + AGY +L Sbjct: 269 LAIIRALEIEGGCNVQLAIDPDSDQYYIIEVN--PRVSRSS--ALASKAAGYPIAKLSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 97/285 (34%), Gaps = 30/285 (10%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 A+ +AG++ I+ V V+ H KP+ G Sbjct: 578 KAIREAGYEAIVINNNPETVSTDFEVSDKLYFEPLTTEDVMHVIEHEKPEGVLVQFGGQT 637 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + + + I T + + + + ++ +P + + M Sbjct: 638 AINLADSLVKQGVRILGTSLEEMDACENRNLFEARLHDIGLPMPEGKTAVSVPEAMAIAE 697 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ + + + ++ + N +LI++Y+ G E+ V+ Sbjct: 698 DIGYPVLVRPSYVLGGRAMEIVHTESELSHYMQRAVNVNKKHPVLIDEYITGTEIEVDVV 757 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + P K+ ++ + + + A + +G Sbjct: 758 SDGETAVVPGIMEHIERAG---VHSGDSIAVYPPQKLSDEMKETITQSAIRLAKGFQIKG 814 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + F+ ++ +E+N + T P ++ G + Sbjct: 815 LMNIQFVI--QRDRLLVIEVNPRSSRT----VPFISKITGMNMAN 853 >gi|1168772|sp|P46537|CARB_BACCL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|312443|emb|CAA51739.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) [Bacillus caldolyticus] Length = 1065 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C A++ AG++ I+ + V V+ +P G Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPIGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + + T L A DK P + + + Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + N +L+++Y+ G E+ Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D V + + +S + P + ++ ++ + + Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ V+ LE+N + T P ++ G L + Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860 >gi|332701280|ref|ZP_08421368.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio africanus str. Walvis Bay] gi|332551429|gb|EGJ48473.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio africanus str. Walvis Bay] Length = 1140 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ +PD Sbjct: 92 SGTQAVKALKEEGYEVVLVNSNPATIMTDPELADRTYIEPITPEVVAKIIEKERPDALLP 151 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G V L + G A+ + R + + + P Sbjct: 152 TLGGQTGLNTALAVAESGVLDQFGVELIGASQVAIRKAESRQEFREAMARIGLKVPESGI 211 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I+ P +++P G V + + + + ++++EQ Sbjct: 212 ARNMDDVREWGQKIAFPIIVRPAFTLGGTGGGVAYNMEDLEAIAGRGLDASVKSEVMLEQ 271 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + I + + + + K Sbjct: 272 SVLGWKEYELEVMCDTAGNGVIICSIENLDPMGVHTGDSITVAPAQTLTDDEYQKMRDAA 331 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +E+N P ++ S + G+ ++ Sbjct: 332 LAIMREIGVSTGGSNVQFAVNPADGDMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 387 Query: 291 WM 292 + Sbjct: 388 KL 389 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 31/295 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + + D D V ++ +P+ G Sbjct: 655 ALKELGVESIMVNSNPETVSTDYDTSTRLYFEPLTLEDVLNIIDLEQPEGVVVQFGGQTP 714 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + ++I T + A ++ ++ P + + Sbjct: 715 LNLAVPLLRNGVKILGTSPDSIDRAEDRERFQALLNKLDLKQPPNATAFSEGEALIKAQK 774 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182 I P V++P + +I + + + +L++Q+++ IE+ + Sbjct: 775 IGYPVVVRPSYVLGGRAMAIIYSPEELSAYFKKEVLVAPEHPILVDQFLENAIEVDVDAL 834 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + ++ + P I ++ E++R Q +G G Sbjct: 835 SDGTDTYVAGIMEHIEEAGIHSG---DSACVIPPHTISKELQAEIERQTIALAQELGVVG 891 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + F VF LE+N + T P ++ G L ++ AS Sbjct: 892 LMNIQFAI--KDDVVFILEVNPRASRTA----PFVSKATGVPLPRLATQIMLGAS 940 >gi|294616600|ref|ZP_06696376.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1636] gi|294617884|ref|ZP_06697493.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1679] gi|291590550|gb|EFF22283.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1636] gi|291595829|gb|EFF27113.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium E1679] Length = 1061 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|283458036|ref|YP_003362646.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa DY-18] gi|283134061|dbj|BAI64826.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa DY-18] Length = 1106 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + + ++ KPD Sbjct: 29 SGTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKIIEKEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + +L + + I A L D+ K VV G S+ Sbjct: 89 TLGGQTALNAAISLDERGVLAKYNVELIGANIEAINLGEDREAFKGVVERAGGESARSVI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P V++P LG + ++ + ++ ++L+E+ Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M + D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDTNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREFQKLRDIA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 INVIREVGVDTGGCNIQFAIDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|261207809|ref|ZP_05922494.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6] gi|289566261|ref|ZP_06446693.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium D344SRF] gi|260078192|gb|EEW65898.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6] gi|289161968|gb|EFD09836.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium D344SRF] Length = 1061 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ V +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + + S + Q LIE+ Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D S+ L L + NV+ G Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + D P+ + + Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVIIAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L+++Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I K ++ + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860 >gi|228916524|ref|ZP_04080090.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843103|gb|EEM88185.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|228954163|ref|ZP_04116191.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805483|gb|EEM52074.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|228987031|ref|ZP_04147156.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772625|gb|EEM21066.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229071386|ref|ZP_04204608.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185] gi|228711677|gb|EEL63630.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|228928935|ref|ZP_04091967.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947606|ref|ZP_04109896.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123400|ref|ZP_04252604.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201] gi|228660176|gb|EEL15812.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201] gi|228812126|gb|EEM58457.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830742|gb|EEM76347.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93 V ++ +PD L G G + V+ +EI T + A D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 R+ + P I + I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229140535|ref|ZP_04269090.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST26] gi|228643096|gb|EEK99372.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST26] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|228960104|ref|ZP_04121768.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047571|ref|ZP_04193161.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676] gi|229111356|ref|ZP_04240909.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15] gi|229129164|ref|ZP_04258137.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-Cer4] gi|229146458|ref|ZP_04274829.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST24] gi|228637091|gb|EEK93550.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-ST24] gi|228654401|gb|EEL10266.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BDRD-Cer4] gi|228672132|gb|EEL27423.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15] gi|228723818|gb|EEL75173.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676] gi|228799620|gb|EEM46573.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229081139|ref|ZP_04213649.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2] gi|229152084|ref|ZP_04280279.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550] gi|228631433|gb|EEK88067.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550] gi|228702183|gb|EEL54659.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229157465|ref|ZP_04285542.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC 4342] gi|228625915|gb|EEK82665.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC 4342] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +LE + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229186127|ref|ZP_04313296.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1] gi|228597303|gb|EEK54954.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93 V ++ +PD L G G + V+ +EI T + A D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 R+ + P I + I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|282899734|ref|ZP_06307697.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Cylindrospermopsis raciborskii CS-505] gi|281195349|gb|EFA70283.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Cylindrospermopsis raciborskii CS-505] Length = 1083 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ + GV VCPS Sbjct: 89 TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVNVCPSGT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + L + Q+LI+ Sbjct: 149 ASSLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFELMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 >gi|169343276|ref|ZP_02864287.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens C str. JGS1495] gi|169298574|gb|EDS80655.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens C str. JGS1495] Length = 1067 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I+ + V ++ PD G Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T S + A ++ + P + ++ Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I I ++V +IG +G Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISGKIKEDVLDYTKKLALSIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ K++ +E+N + T P ++ +G ++ + Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|238026779|ref|YP_002911010.1| carbamoyl phosphate synthase large subunit [Burkholderia glumae BGR1] gi|237875973|gb|ACR28306.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia glumae BGR1] Length = 1084 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ + R K + + + + Sbjct: 89 TMGGQTALNCALDLHHHGVLEKYDVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 +M+ + P VI+P G + + + + Sbjct: 149 AHSMEEALKVQAEIAAATGGSGYPTVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 43.7 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V V+ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAAGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAESEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAQTVAELKRQTGAMARA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|149195024|ref|ZP_01872117.1| carbamoyl-phosphate synthase large subunit [Caminibacter mediatlanticus TB-2] gi|149134945|gb|EDM23428.1| carbamoyl-phosphate synthase large subunit [Caminibacter mediatlanticus TB-2] Length = 1090 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V ++ + + ++ K D Sbjct: 29 SGVQAAKTLKSLGYRVVLVNSNPATIMTDPEFADATYIEPITPEVISKIIKKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ +L+ +E + + + + +P + Sbjct: 89 TMGGQTALNVAMEMYDKGMLKGVEFLGANPEAIKKGEDREAFKKAMEKIGMDLPKSATAN 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + I P +++ LG V + +++ I + + Sbjct: 149 NLEDAIKIVEEIGFPVIVRAAFTLGGLGSGVAYNMDEFKELAKTGIESSPINEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + + Sbjct: 209 LGWKEYEMEVIRDKEDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 39.9 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 83/263 (31%), Gaps = 12/263 (4%) Query: 32 KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + V V+ PD G +I T + ++ +A Sbjct: 607 DVLYFEPINFERVRNVIDLESPDGVIVQFGGQTPLKLAKPLTSIGAKIIGTSAKVIDTAE 666 Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 +K P + I P +++P + ++ + Sbjct: 667 DREKFAEFIKDLGLNQPENGTAFTKEEAYKIADKIGYPVLVRPSYVLGGRAMRIVYNENE 726 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208 + + ++ S ++ +LI++++D IEL + D + + Sbjct: 727 LKEYMDEAVSVSNESPVLIDKFLDRAIELDVDAISDTKNVYIGGIMQHIEEAGIHSG--- 783 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ + I + KE++ + +G +G+ + K++ +E+N + Sbjct: 784 DSACSLPNVSISEEKIKEIENVTKQIALKLGVKGLLNIQYAL--HKDKLYLIEVNPRASR 841 Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 842 T----VPFVSKATGLPMAKVATR 860 >gi|325978522|ref|YP_004288238.1| carbamoyl phosphate synthase large subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178450|emb|CBZ48494.1| carbamoyl phosphate synthase large subunit [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1059 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|306831618|ref|ZP_07464776.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426403|gb|EFM29517.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1059 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|229162822|ref|ZP_04290779.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803] gi|228620704|gb|EEK77573.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803] Length = 1018 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ +PD L G G + + + + + IL + LS + + Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 100 VS-------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 + + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|295399740|ref|ZP_06809721.1| carbamoyl-phosphate synthase, large subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294978143|gb|EFG53740.1| carbamoyl-phosphate synthase, large subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 1064 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +L + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELANAGVLAECGVEILGTKLDAIEKAEDREQFRALMNELGEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICTNEKELTDIVSTGLKLSPAHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V V+ KP G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTMEDVMHVIDLEKPVGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T L A DK P + + Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQALSDLRIPKPQGKTAFSVEEAVRIAKE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEKELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + +I +++ + + G+ Sbjct: 760 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQTLTEEIKRKIIDYTMKLARGLRIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ +V+ LE+N + T P ++ G + ++ A Sbjct: 817 LNIQFVM--YQDEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863 >gi|312111741|ref|YP_003990057.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y4.1MC1] gi|311216842|gb|ADP75446.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y4.1MC1] Length = 1064 Score = 63.0 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +L + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELANAGVLAECGVEILGTKLDAIEKAEDREQFRALMNELGEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICTNEKELTDIVSTGLKLSPAHQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 92/293 (31%), Gaps = 30/293 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V V+ KP G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTMEDVMHVIDLEKPVGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T L A DK P + + Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQALSDLRIPKPQGKTAFSVEEAVRIAKE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +++ + + + N +LI +Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEKELLHYMEHAVKVNPQHPVLINRYLIGKEIEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + +I +++ + + G+ Sbjct: 760 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQTLTEEIKRKIIDYTMKLARGLRIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ +V+ LE+N + T P ++ G + ++ A Sbjct: 817 LNIQFVM--YQDEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863 >gi|310287765|ref|YP_003939023.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium bifidum S17] gi|311064651|ref|YP_003971376.1| carbamoyl-phosphate synthase large chain [Bifidobacterium bifidum PRL2010] gi|309251701|gb|ADO53449.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium bifidum S17] gi|310866970|gb|ADP36339.1| CarB Carbamoyl-phosphate synthase large chain [Bifidobacterium bifidum PRL2010] Length = 1126 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMSLGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVDEAGAESARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + ++ + ++ D++L+E+ Sbjct: 149 AHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLHYSPTDEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|33240347|ref|NP_875289.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237874|gb|AAP99941.1| Carbamoylphosphate synthase large subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1108 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 99/315 (31%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG AL+ GF+V I D + ++ KPD Sbjct: 29 SGTQACKALKKEGFEVVLINSNPASIMTDPEMADRTYIEPLTTEVITKIIELEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V IL +I + + + + D+ K + GV VCPS + Sbjct: 89 TMGGQTALNAAVDLAEKGILRKFKIELIGADLESINKAEDRQLFKNSMEKIGVNVCPSGI 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ S P +I+P G + + + Q+LIE Sbjct: 149 ACNIEEAINVGSNIESFPRIIRPAFTLGGSGGGIAYNQEEFISICKSGLEASPASQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + ++D I + + + + + + Sbjct: 209 KSLLGWKEFELEVMRDNVDNVVIICSIENIDPMGIHTGDSITIAPAQTLTDREYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 269 SIKIIREIGVETGGSNVQFAVNPVDGEVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLAIGYRLDEILND 339 >gi|172057952|ref|YP_001814412.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sibiricum 255-15] gi|226700928|sp|B1YIR9|CARB_EXIS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|171990473|gb|ACB61395.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sibiricum 255-15] Length = 1070 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + D V ++ +PD Sbjct: 30 GTQACQALKEEGYEVVLVNSNPATIMTDPTVADRVYIEPLQAEFVARIIRKERPDALLAT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ + Y + A D R GVP + Sbjct: 90 LGGQTGLNLAVELDRLGVLAEYGVELLGTKLTAIEEAEDRDLFRKLMFKLGHGVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +I+P G + + + + Q+L+E+ Sbjct: 150 HTVEEAEQFCAKIGLPIIIRPAYTLGGTGGGIAETMDEFIRIVEGGLKASPATQVLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G++ + + + I +F + D Y+ ++ ++ Sbjct: 210 IAGMKEVEFEVMRDATNQAIIVCAMENFDPVGVHTGDSIVFAPTQTLSDRD-YQMMRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G F DP+S + +E+N P ++ S + GY +L Sbjct: 269 LDIIRVLGIEGGCNIQFALDPVSFTYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 30/292 (10%) Query: 23 ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61 A+ +AG++ ++ V V+ + +P G Sbjct: 578 IQAIREAGYEAIIVNNNPETVSTDFSISDRLYFEPLTTEDVLEVIRNEQPIGVIVQFGGQ 637 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + E ++I T L A + + P + + + Sbjct: 638 TAINLAESLEAEGVKILGTSLEDLDRAEDRKQFEAALTQLDIPQPPGKTAVTVTEATAAA 697 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + P +++P + ++ +Q + + + + +L+++Y+ G+EL Sbjct: 698 SELGYPVLVRPSYVLGGRAMEIVYGEQELEHYMKHAVIASPERPVLVDRYLTGMELEVDA 757 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + V + + + P ++P I + + +A + Sbjct: 758 ICDGTDVVIPGIMEHIERAGIHSG---DSIGVYPPQRVPQAIKELIVDYTTRIAKAFRIK 814 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+F +++ LE+N + T P ++ G L ++ Sbjct: 815 GLLNIQFVF--ADGELYVLEVNPRASRT----VPFISKVTGLPVARLATNVI 860 >gi|83273647|ref|XP_729490.1| acetyl-CoA carboxylase 1 precursor [Plasmodium yoelii yoelii str. 17XNL] gi|23487445|gb|EAA21055.1| acetyl-CoA carboxylase 1 precursor-related [Plasmodium yoelii yoelii] Length = 2911 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 12/195 (6%) Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 + +I + I P +IK +GG GI ++ + I Q + Sbjct: 579 QDIYNKSTIHSLEECIRECKRIGYPVMIKASQGGGGKGIRKVENENEIKKYYEQVQNELP 638 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 + + + + + D+ S + P+ +P Sbjct: 639 NSPIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSIVPPH 695 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIF 274 ++E+++ + + I RG ++L+D ++ K ++LE+N P G+T +I Sbjct: 696 TFREMEKASIRLTKMIKYRGAGTIEYLYDQVNNKYYFLELNTRLQVEHPVSEGITDTNIV 755 Query: 275 PEMAA-YAGYSFREL 288 G + + Sbjct: 756 AIQLQVAMGIPLQNI 770 >gi|300741565|ref|ZP_07071586.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa M567] gi|300380750|gb|EFJ77312.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa M567] Length = 1114 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + + ++ +PD Sbjct: 29 SGTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKIIEKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + Q L ++ + I A L D+ K VV G SI Sbjct: 89 TLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVERAGGESARSII 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P V++P LG + ++ + ++ ++L+E+ Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDIA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 INVIREVGVDTGGCNIQFAVDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|311113658|ref|YP_003984880.1| carbamoyl-phosphate synthase large subunit [Rothia dentocariosa ATCC 17931] gi|310945152|gb|ADP41446.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa ATCC 17931] Length = 1114 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + + ++ +PD Sbjct: 29 SGTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKIIEKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + Q L ++ + I A L D+ K VV G SI Sbjct: 89 TLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVERAGGESARSII 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P V++P LG + ++ + ++ ++L+E+ Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDIA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 INVIREVGVDTGGCNIQFAVDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|149908009|ref|ZP_01896677.1| D-alanylalanine synthetase [Moritella sp. PE36] gi|149809015|gb|EDM68946.1| D-alanylalanine synthetase [Moritella sp. PE36] Length = 384 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 109/306 (35%), Gaps = 38/306 (12%) Query: 22 CASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLE 76 A AL ++GF+ IDV + + L L DL G G D + ++LE+L Sbjct: 54 IADALRESGFQ--HIDVLPENMDLPQRLKALNIDLVITNSGGLQGFDSMCHLPSMLEMLG 111 Query: 77 IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLIS 125 +PY + + L +K K + + G+P P I V Sbjct: 112 VPYVGHSPMTAGLLDNKHLFKHEIKAAGIPTAPFITVGLGECITDAVNKEALDQIDADFG 171 Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179 +++KP+ G +S+ + + + + + + ++IE Y+ G E Sbjct: 172 GRFIVKPVSGRASIHVYPVFDRADLAGKVKIVQAAT-NNIVMIEPYLSGREFVVAVAGSV 230 Query: 180 -------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 + V D + ++ L ++ + + L Sbjct: 231 IFKNDKLNQLDSPFAFSVTERVLADDEPIFTSMDVKPITSDRLLKVDEPELRQSLIDLGN 290 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRE 287 +Q +G + R D D K++ LE N +P + +SI G S+++ Sbjct: 291 KIYQQLGLGTLVRVDLRMDCK-GKLYVLEANPKPDLKRPEGDKLSIVCHDIHNEGMSYQD 349 Query: 288 LLLWMV 293 L+ +V Sbjct: 350 LIQSLV 355 >gi|114049526|emb|CAJ75872.1| PyrAb1 protein [Lactobacillus plantarum subsp. plantarum] Length = 1058 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T + A D+ + P + + Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P + ++KK + + + +H +L++ Y+ G E + Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + ++ A+ C G Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ + Sbjct: 816 VMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ ++V ++ + V +L PD Sbjct: 29 SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ ++ VP Sbjct: 89 TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + Q + + + Q+LIEQ Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + ++ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|119485029|ref|ZP_01619414.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Lyngbya sp. PCC 8106] gi|119457257|gb|EAW38382.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Lyngbya sp. PCC 8106] Length = 1079 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETAERTYIEPLVPEIVEKVIEKERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + +LE + + + A ++ D+ KQ + GV CPS Sbjct: 89 TMGGQTALNLAVALAKNGVLEKYGVELIGAKLEAIEMAEDRQLFKQAMERIGVACCPSGI 148 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ +Q + S P +I+P G + + + Q+L+E Sbjct: 149 VSNMDEARTVAQQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELASGGLDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ + +E+N P ++ S + G+ + Sbjct: 269 SIKIIREIGVETGGSNIQFAINPVNGDMIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 88/295 (29%), Gaps = 39/295 (13%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL G++ ++ V ++ KP G Sbjct: 586 ALRANGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVINIIEAEKPVGIIIQFGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSG-------ILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 + L + + + D+ R ++++ + + + F Sbjct: 646 LKLAIPLQKYLEANAEKNPDLKIWGTSPDSIDAAEDRERFEKILRQLNIQQAENGMARNF 705 Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 I P V++P + ++ D+ + ++ + +L++++++ Sbjct: 706 EQSLQIARRIGYPVVVRPSYVLGGRAMEIVYSDEDLERYMMFAVQIEPDHPILVDKFLEN 765 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFL 233 + E+ + + + S +S +P + + ++R Sbjct: 766 AIEVDV--DAIADQTGEVVIGGIMEHIEQAGVHSGDSACSIPYQTLPKTAVETIRRQTIE 823 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+ G+ F +V+ LE N + T P ++ G ++ Sbjct: 824 LAKALKVVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKM 872 >gi|186685843|ref|YP_001869039.1| carbamoyl phosphate synthase large subunit [Nostoc punctiforme PCC 73102] gi|186468295|gb|ACC84096.1| carbamoyl-phosphate synthase, large subunit [Nostoc punctiforme PCC 73102] Length = 1087 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIEKERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ + ++ GV VCPS Sbjct: 89 TMGGQTALNLAVALAKNGVLEKYGVELIGAKLPAIEKAEDRKLFGEAMARIGVAVCPSDT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 P +I+P G + + + Q+LI+ Sbjct: 149 AETLEEAKAVARQIGSYPLIIRPAFTMGGSGGGIAYNQEEFEEMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +PL+ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPLNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 >gi|295396137|ref|ZP_06806320.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294971078|gb|EFG46970.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 1089 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L G +V + D D + ++A +PD Sbjct: 29 SGTQACRVLRSEGLRVILVNSNPATIMTDPDIADATYVEPIDPEVIEAIIAKERPDALLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G + +LE + + + A ++ + K VV +C V Sbjct: 89 TLGGQTALNAAINLHKAGVLEKYGVELIGADVDAIERGENRQQFKGVVETCGAEVARSRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P V++P LG + + + + +++L+E+ Sbjct: 149 AHTMDECLEAAQELGYPMVVRPSFTMGGLGSGMAYNEDDLRRIAGDGLHDSLTNEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + +F + + ++ K Sbjct: 209 SILGWKEYELELMRDRNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDVEFQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREVGVDTGGCNIQFAVNPDNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|313892194|ref|ZP_07825787.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E] gi|313119332|gb|EFR42531.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E] Length = 1142 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/286 (10%), Positives = 76/286 (26%), Gaps = 44/286 (15%) Query: 19 GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48 A ++ G + + + + Sbjct: 16 AIRVFRACKELGIRTVAVYSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKE 75 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 D +G E+ + I + + DK+ +++ +P+ Sbjct: 76 HNVDAVHPG-YGFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMI 134 Query: 109 PSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159 P + P +IK + GG G+ + + + + Sbjct: 135 PGTHGAVKSFDDVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLA 194 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + + V+ + ++GD ++ + K + LP Sbjct: 195 FGDDEVYAERCVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQKVIEMAPAWSLPL-- 252 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ K + A + + +FL D + +++E+N + Sbjct: 253 --ELRKRICDAAVKLMKNVKYLNAGTVEFLVDENQKDFYFIEVNPR 296 >gi|255535159|ref|YP_003095530.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae bacterium 3519-10] gi|255341355|gb|ACU07468.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae bacterium 3519-10] Length = 1060 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 88/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++ G++ I+ + V ++ KP G Sbjct: 581 AIKELGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + +K + P+ + + + Sbjct: 641 INLADKLAAHGVQILGTSLEDLDRAENRNKFEAALQEMGIPQPLGKTCFTKEEALIIANE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ D+ + + + + +LI++Y+ G E+ + Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYDDKDLSYYMTNAVKESSEHPILIDRYLTGREVEVDAIS 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P I + + + + G+ Sbjct: 761 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNITPKQIETLVDYTERLAKGLNVIGL 817 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ V+ +E+N P ++ ++ P Sbjct: 818 MNIQYVL--SDGNVYVIEVNPRSSRTVPFLSKITEIPMA 854 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G +L + G+KV I+ + + V ++ +PD Sbjct: 29 GTQACLSLREEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPT 88 Query: 58 LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +E+ T + A D R + VP + Sbjct: 89 LGGQTGLNMAVELQNSGILDECKVEVLGTKLSAINQAEDRDLFRELMRELNEPVPDSDIV 148 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P +++P G + D+ + ++ Q LIE+ Sbjct: 149 NTVQGALEFAERIGYPVIVRPAFTMGGTGGGIAHNDEELKEIASFGLKYSPVTQCLIEKS 208 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 209 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNSS 267 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 268 LKIIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 323 Query: 292 M 292 + Sbjct: 324 I 324 >gi|114330475|ref|YP_746697.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas eutropha C91] gi|114307489|gb|ABI58732.1| carbamoyl-phosphate synthase large subunit [Nitrosomonas eutropha C91] Length = 1065 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V V+ +PD Sbjct: 29 SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQVVEKVIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +LE + + A ++ D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDMAEDREKFKQAMTRIGLQSARSAM 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M +Q +I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEAMRAQAVIGYPVIIRPSFTLGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVIGWKEFEMEVIRDKQDNCIIVCAIENVDPMGVHTGDSITVAPAQTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAINPENGNMLVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + ++ I D D V ++A KP G Sbjct: 582 ALREDQYETIMINCNPETVSTDYDVSDRLYFEPLTLEDVLEIVAVEKPVGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ A ++ ++ P + + + Sbjct: 642 LKLARELEENEVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPPNFTARTPETALAAADN 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++ Y + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEARDLERYMQEAVKVSNDSPVLLDHYLNNAIEVDVDAI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + E++R +A+ RG Sbjct: 762 FDGETVLVGGIMEHIEQAG---VHSGDSACSLPPFSLSTSLQDELRRQTGAMARALNVRG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 819 LMNIQFAI--QDNVVYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 861 >gi|299136670|ref|ZP_07029853.1| urea carboxylase [Acidobacterium sp. MP5ACTX8] gi|298601185|gb|EFI57340.1| urea carboxylase [Acidobacterium sp. MP5ACTX8] Length = 1198 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 L+ P ++K GG +G+ V + + + + Y++ Sbjct: 146 QAELLKYPVMLKSSGGGGGIGMRVCHSAEQLGEAYESVLRLSRANFGDSGVYLEKFVSRA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + + V + PA + ++++ A L +A+ Sbjct: 206 RHIEVQIFGDGKGNVLALGERDCSAQRRHQKVLEETPAPGLTEATREQLRSAAILLAKAV 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F++D + + ++LE+N + G+T G +L+ WMV Sbjct: 266 NYASAGTVEFIYDDDTNEFYFLEVNTRLQVEHGVTE--------EVTGI---DLVEWMVR 314 Query: 295 DASCL 299 AS Sbjct: 315 QASGD 319 >gi|224283412|ref|ZP_03646734.1| Carbamoylphosphate synthase large subunit [Bifidobacterium bifidum NCIMB 41171] gi|313140567|ref|ZP_07802760.1| CarB [Bifidobacterium bifidum NCIMB 41171] gi|313133077|gb|EFR50694.1| CarB [Bifidobacterium bifidum NCIMB 41171] Length = 1126 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVDEAGAESARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + ++ + ++ D++L+E+ Sbjct: 149 AHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLHYSPTDEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|167918463|ref|ZP_02505554.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei BCC215] Length = 1084 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEGICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|288905532|ref|YP_003430754.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gallolyticus UCN34] gi|288732258|emb|CBI13825.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gallolyticus UCN34] Length = 1059 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVAILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMSMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|330987044|gb|EGH85147.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|330963964|gb|EGH64224.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAR 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|330958060|gb|EGH58320.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|298488445|ref|ZP_07006476.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157070|gb|EFH98159.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|289624591|ref|ZP_06457545.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646950|ref|ZP_06478293.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. aesculi str. 2250] gi|330868235|gb|EGH02944.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|257482272|ref|ZP_05636313.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011487|gb|EGH91543.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|237798552|ref|ZP_04587013.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021405|gb|EGI01462.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|71733927|ref|YP_276322.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554480|gb|AAZ33691.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|28871635|ref|NP_794254.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213966658|ref|ZP_03394809.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv. tomato T1] gi|301383168|ref|ZP_07231586.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. tomato Max13] gi|302063397|ref|ZP_07254938.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. tomato K40] gi|302133770|ref|ZP_07259760.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38257463|sp|Q87WP4|CARB_PSESM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|28854887|gb|AAO57949.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213928508|gb|EEB62052.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv. tomato T1] Length = 1073 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|21535791|emb|CAC85727.1| putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum] Length = 1203 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V VL +PD Sbjct: 125 SGTQACKALREEGYEVILINSNPATIMTDPEMADRTYIEPMTPELVEQVLERERPDALLP 184 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V +L+ + + + A + D+ KQ + + G+ PS + Sbjct: 185 TMGGQTALNLAVXLAESGVLDXYGVELIGAKLGAIKKAEDRDLFKQAMKNIGIKTPPSGI 244 Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + + P +I+P G + + + + Q+L+E Sbjct: 245 GNTLEECIEIAGEIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 304 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 305 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 364 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 365 SIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 420 Query: 290 LWM 292 + Sbjct: 421 AKL 423 >gi|59802610|sp|O50236|CARB_ZYMMO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1112 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 98/305 (32%), Gaps = 35/305 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + LE + A + D+++ +Q + G+ S Sbjct: 89 TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P +I+P G V + + S + ++LIE+ Sbjct: 149 AHSLEEALDGLDYVGLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + ++ + T + Y+ ++ Sbjct: 209 SVIGWKEYEMEVVRDRHDNCIIICSIENIDPMG-VHTGDSITVAPALTMTDKEYQIMRNA 267 Query: 231 AFLAHQAIGC---RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 + + IG G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 268 SIAVLREIGVETGNGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAK 323 Query: 288 LLLWM 292 + + Sbjct: 324 VATKL 328 Score = 42.2 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59 ALE AG++ + D D S L L + +LH Sbjct: 621 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 680 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + + I T + A ++ + P + Sbjct: 681 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 740 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P +I+P + +I + + + + +LI+QY+ + T Sbjct: 741 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 798 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + + + +S ++ + P +P I +E++ +A+ Sbjct: 799 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 858 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ F KV+ +E+N + T P +A G ++ Sbjct: 859 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 904 >gi|21672427|ref|NP_660494.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008213|sp|Q8K9Z7|CARB_BUCAP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|21623038|gb|AAM67705.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 1077 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+K+ ++ + + V ++ +PD Sbjct: 29 SGAQACKALKEEGYKIILVNSNPATIMTDPCMADATYIEPIHWKIVKKIIQKEQPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110 + G + + IL+ + + I A + D+ + + + C Sbjct: 89 TMGGQTALNCALELNRRGILKKFNVKIIGATIDAINKAEDRKLFEDSMKKLNLKTAKCGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G + + + + +LLI++ Sbjct: 149 AHNIQEALLVLKNVGFPCIIRPSFTMGGHGGGIAYNQEEFEDICERGLKLSPTTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNNNCIIVCSIENLDPMGIHTGDSITIAPAQTLSDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 104/319 (32%), Gaps = 47/319 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39 + V+ GG + G+ A AL + GF+ I D+ Sbjct: 563 IIVIGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMINCNPETVSTDYDISD 615 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 +V ++ P G Q E + I T+ + A Sbjct: 616 RLYFEPITLENVLEIVRIENPKGVIIQYGGQTPLKLARQFEKEGIPIIGTNPDAIDKAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P+ ++L I P +++P + ++ + + Sbjct: 676 RNRFQKIVTKLKLKQPLNATVLTLEEAHKKAIEIGYPIMVRPSYVLGGRAMEIVYEPCDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + NH +L++QY++ V DA D ++ + + + S + Sbjct: 736 DNYFKKFLKNNHITPILLDQYLN---YAIEVDVDAICDGEKVLIGGIMEHIEQAGVHSGD 792 Query: 211 STHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S LPA I +++ A+ +G+ F + +++ +E+N + T Sbjct: 793 SACSLPAYTLTNKIQNKIREQVKKLAFALSVKGLMNVQFAI--KNNEIYIIEVNPRAART 850 Query: 270 PVSIFPEMAAYAGYSFREL 288 P ++ G + ++ Sbjct: 851 ----VPFVSKATGLALAKI 865 >gi|124358358|gb|ABN05630.1| vancomycin resistance protein A [Enterococcus faecalis] Length = 268 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 44/270 (16%) Query: 18 SGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--------------------------- 50 S A+ + ++ I + +S + Sbjct: 1 SAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKK 60 Query: 51 --------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + Sbjct: 61 NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKN 120 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 G+ ++N+ + P +KP + GSS G+ + + + S+ + Sbjct: 121 AGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQY 178 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVL 215 ++LIEQ V G E+ C V+G+++ V Y + + + Sbjct: 179 DSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITV 238 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 PA + + +Q A ++A+GCRG++R Sbjct: 239 PADLSAEERGRIQETAKKIYKALGCRGLAR 268 >gi|312142595|ref|YP_003994041.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp. 'sapolanicus'] gi|311903246|gb|ADQ13687.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp. 'sapolanicus'] Length = 1068 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 103/302 (34%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G+++ ++ + S+ ++ KPD + Sbjct: 29 SGTQACKALMEEGYEIVLVNSNPATIMTDPEMADRTYIEPLNVSSLERIIEKEKPDALLS 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ILE + A D++ K+ + VP+ S+ Sbjct: 89 NLGGQTALNLSSELYEAGILEEHGVEIIGIQPEAIKRGEDRISFKEEMEKLDVPMPRSLP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 H + P V++P G ++ + + + + +Q+LIE+ Sbjct: 149 AYSVDEAEKIAHDLGYPVVVRPAYTMGGTGGGLVYNVEELRNIAENGLAASMINQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + +I++ + ++ + + D+ ++ Sbjct: 209 AVIGWQ-ELELELVRDDNGKKISICFIENVDPMGVHTGDSFCVAPMLTVSQDVQDRIEEY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ AIG G + F ++P ++ +E+N + T S + G+ + Sbjct: 268 SYKIADAIGVIGGANFQFGYNPEEDRMVVIEMNPR---TSRSS-ALASKATGFPIARIST 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 42.6 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 87/295 (29%), Gaps = 32/295 (10%) Query: 22 CASA--LEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVL 58 +A L+D G++ + D+ V + +PD Sbjct: 575 VHAAFTLDDLGYESVMVNCNPETVSTDYDISNKLYFEPLTTEDVLRIYEKEQPDGMIVQF 634 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + + I T + A + ++ R+ P Sbjct: 635 GGQTPLNIAAELEEAGVNILGTSPASIDFAENREEFRALMNKLDIPQPESDIAKSVEEAY 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 I P +++P G+ ++ ++S+ + + + + ++ L Sbjct: 695 AIAESIGYPLMLRPSYVLGGRGMEIVYDEKSLTKYINTAVAEVSAEHPILIDKFLEDALE 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237 V T + + E S +S +P I + + ++ + + Sbjct: 755 AEVDALTDGKETFV--AAVMEHIEEAGIHSGDSACAIPSINITDEQLETIKDYSAKIAEG 812 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G+ F KV+ +E N + T P ++ G + L + Sbjct: 813 LDVVGLMNIQFAI--YEGKVYIIEANPRASRT----VPLVSKVTGINMARLATRL 861 >gi|238922175|ref|YP_002935689.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750] gi|238873847|gb|ACR73555.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750] Length = 1072 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57 G +L++ G +V + D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVEALKQIILKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ LE + + L + D++ K+ + G P PS + Sbjct: 90 LGGQAGLNLAMEIAETGFLEEHNVKLIGTTALTIKKAEDRLMFKETMEKIGEPCAPSLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P V++P G + Q + L + ++L+E+ Sbjct: 150 NNVEDGEAFAAKIGYPVVLRPAYTLGGSGGGIANNVQELREILENGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDSNGTCITICNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LRIIDELGITGGCNVQYALHPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 98/293 (33%), Gaps = 36/293 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A + GF+ I D D V ++ KPD A G Sbjct: 581 AFKKEGFETVIINNNPETVSTDFDIADKLYFEPLTAEDVESIVDFEKPDGAVVQFGGQ-- 638 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121 + L + +P + + D+ +++ +P + + + Sbjct: 639 TAIKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEQTQIPRAKGQTVFTVDEALKAA 698 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P G+ + D+ + + + +L+++Y+ G E+ Sbjct: 699 NELGYPVLVRPSYVLGGQGMQIAVSDEDVVEFMNIINRIKQDHPILVDKYLMGKEIEVDA 758 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240 + D + P + S +S V P I I ++ +A+ Sbjct: 759 VCDGQDILI----PGIMEHIERAGIHSGDSISVYPAKSISPKIVDMIEDYTGRLARALHV 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 815 KGMINIQFIV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861 >gi|259503438|ref|ZP_05746340.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041] gi|259168516|gb|EEW53011.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041] Length = 1060 Score = 62.6 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G++ ++ + V V+ +P G Sbjct: 577 CVKALQGLGYEAIVMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPAGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T L +A PV + ++ +D+ Sbjct: 637 QTAINLAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLGLKQPVGLTATTHQGVIDA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + L +++ +LI+ Y++G E Sbjct: 697 ATEIGYPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P DI +++ A+ C Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDEDIKRQIVDATKKLAIALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RGI F+ + + LE+N + T P ++ G ++ ++ Sbjct: 814 RGIMNIQFII--HDHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++ ++ + SV ++ PD Sbjct: 29 SGTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRKEYPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + +L+ L I + + + + D+ + K+++ VP + Sbjct: 89 TLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDQAEDREKFKELMQQLGEPVPASQT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +D H I P +++P G + D+ + + Q LIE+ Sbjct: 149 VSTVAEALDFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLDLSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEVEFEVMRDAADNAMVVCCMENFDPVGIHTGDSIVFAPSQTLSDRDYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|291619625|ref|YP_003522367.1| DUR1,2 [Pantoea ananatis LMG 20103] gi|291154655|gb|ADD79239.1| DUR1,2 [Pantoea ananatis LMG 20103] Length = 1201 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 16/185 (8%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++K GG +G+ V + + + +++ Sbjct: 144 CRVAETVGYPVMLKSTAGGGGIGMRVCRDSHELTEAFDTVQRLGQNNFSDAGVFLENYIE 203 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236 + + V ++ + PA + + + + A + Sbjct: 204 RARHLEVQIFGDGQGDVIALGVRDCSVQRRNQKVIEETPAPNLPEGMAQALCEAAVALGK 263 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ R +F++D L+++ ++LE+N + G+T ++ G +L+ WM Sbjct: 264 AVNYRSAGTVEFVYDSLNQQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVKWM 312 Query: 293 VEDAS 297 +E A+ Sbjct: 313 IELAA 317 >gi|57239360|ref|YP_180496.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium str. Welgevonden] gi|58579326|ref|YP_197538.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium str. Welgevonden] gi|57161439|emb|CAH58363.1| carbamoyl-phosphate synthase, large subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417952|emb|CAI27156.1| Carbamoyl-phosphate synthase large chain [Ehrlichia ruminantium str. Welgevonden] Length = 1075 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L+ G+++ I+ + + + ++ KP Sbjct: 29 SGTQACKTLKKEGYRIILINSNPATIMTDPEIADSTYIEPITTHILEKIIIKEKPSAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + LE + + A + D+ +Q + GV SI+ Sbjct: 89 TVGGQTALNAAISLCNTGILEQYNVKLIGATKEAIKKAEDRNLFRQAMDRIGVKYPKSII 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P +G + + ++ + + ++ +++ Sbjct: 149 IRSVDEINYALEYIGLPAIIRPSFTLGGIGGGISYNKEEFQKNIEYGLNISPISEVQVDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + + + + ++ K Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + GY ++ Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNNDILVIEMN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 12/225 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129 L I + + L+ D+M+ +Q++ + P+I N + + P + Sbjct: 659 LHQKNIRILGTSFDSIDLAEDRMKFQQLLMQLNIKQPPNITYNSKDELLKNIETLDFPIL 718 Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 ++P G I+ + + + + ++HG LL + + +E+ + D Sbjct: 719 VRPSYVLGGQSMSIIRDNNALLNYLTIHKNIFDHGSLLLDQFLTNAVEVDVDAICDGKDT 778 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + +S ++ + + + + A+ +G + Sbjct: 779 YIAGIMEHIEEAG---VHSGDSACSLPAYTLTKETIDTIANYTKKISLALNVQGFINIQY 835 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +++ LE+N + T P +A G ++ ++ Sbjct: 836 AI--HNNEIYILEVNPRASRT----VPFIAKATGIPIAKIATEIL 874 >gi|22095485|sp|O50302|CARB_BACST RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|2661433|emb|CAA05020.1| carbomylphosphate synthetase large subunit [Geobacillus stearothermophilus] Length = 1064 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G+KV ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + V+ +LE + + + A + D+ + + VP I Sbjct: 90 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRL 230 + G V + + + +S V P++ D Y+ ++ Sbjct: 210 IAG--YNQIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + + +E+N P ++ S + GY +L Sbjct: 268 SLKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + + T L A DK P + + + Sbjct: 640 INLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + N +L+++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + D+ ++ + + G+ Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSDDVIAKITDYTVKLARGLHIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F+ V+ LE+N + T P ++ G L + A Sbjct: 817 LNIQFVVAGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863 >gi|319649995|ref|ZP_08004144.1| carbamoyl-phosphate synthase(Arginine-specific) large chain [Bacillus sp. 2_A_57_CT2] gi|317398176|gb|EFV78865.1| carbamoyl-phosphate synthase(Arginine-specific) large chain [Bacillus sp. 2_A_57_CT2] Length = 1041 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +AL++ G+KV ++ + S+ ++ +PD Sbjct: 30 GTQACAALKEEGYKVILVNNNPATIMSDKAFADKVYFEPMTADSLEKIIKIERPDGLLAT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +++ + + + R + VP + Sbjct: 90 LGGQTGLNLAFKLSESGVLEHYGVKLLGSSIESIKKGEDREAFRKLMNELNEPVPESIIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q L+E+ Sbjct: 150 HEVNEAIQFAREIGFPIIVRPAYTLGGTGGGIAGDFDELTSLVQGGLKESAISQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G T I + + ++ + + D Y+ ++ + Sbjct: 210 IAG-FKEVEYEVMRDSQNTCITICNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRTAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G F DP S+ + +E+N P ++ S + GY + Sbjct: 269 IKIISELGIIGGCNIQFALDPHSKNYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324 Query: 292 M 292 + Sbjct: 325 L 325 Score = 39.1 bits (89), Expect = 0.83, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 83/299 (27%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 S + AL D G + I+ + + V+ Sbjct: 577 SVQGVF-ALRDEGVETIMINNNPETVSTDYTTADRLYFEPLILEDILNVIEAEGISEVIV 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVN 114 L G + + LE + + D+ Q++ +P + Sbjct: 636 QLGGQ--TALNLASALENYGVTLLGTDSNTIDALEDRKLFYQLLDDLNIPRIKGDVVHSE 693 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 ++ I P +++P G+ I + L + + Sbjct: 694 EELKEAAENIGFPILVRPSYVIGGRGMERISSSSELEGYLAKGDVPYPILIDQFVHASEA 753 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + K+ +S + + + P + ++ ++ A Sbjct: 754 ELDLAADGNHICAPAIMEHIEKTGVHS------GDSMSVLPPQNLSENVQNKMLAYAKAI 807 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 Q + +G+ ++ + +VF LEIN + T P ++ G + ++ Sbjct: 808 VQKLRYKGLMNIQYIVN--GEEVFILEINPRASRT----VPIISKVTGVQLVGIATKIL 860 >gi|258545416|ref|ZP_05705650.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium hominis ATCC 15826] gi|258519385|gb|EEV88244.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium hominis ATCC 15826] Length = 1123 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 82/302 (27%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL GF+V ++ + +V ++A +PD Sbjct: 86 SGAQACKALRSEGFRVILVNSNPATIMTDPEMADATYIEPIQWQTVEKIIAKERPDAILP 145 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 + G + L G A+ + R + + + Sbjct: 146 TMGGQTALNCALDLAKHGVLERYGVALIGASVQAIETAEDRDLFKKAMSEIGLASAKSFA 205 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +Q + P +I+P G + + ++L+E+ Sbjct: 206 VHSLEEARAAQAELGFPVIIRPSFTLGGSGGGIAYNRDEFEQITAHGLELSPTHEVLLEE 265 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 266 SLLGWKEFEMEVVRDQADNAIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQALRDAS 325 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 326 IAILRKIGVETGGSNVQFAINPRDGRIIVIEMN--PRVSRSS--ALASKATGFPIASVAA 381 Query: 291 WM 292 + Sbjct: 382 RL 383 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 88/288 (30%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + + D D V + +PD G Sbjct: 639 ALREDGIETIMVNCNPETVSTDFDTADRLYFEPLTLEDVLEIARIEQPDGVIVQYGGQTP 698 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 699 LKLARALEAAGVPIIGTPPDAIDRAEDRERFQHLIDELKLLQPPNRTASDTAEALAKAQE 758 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + ++ + +L+++++D + + Sbjct: 759 IGYPLVVRPSYVLGGRAMDIVHNDADLENYMKEALHVSPDAPILLDRFLD-DAIEVDIDV 817 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S ++ + P ++ I ++++ A +A+G G+ Sbjct: 818 ICDGETVILGGLMEH-IEQAGVHSGDSACSLPPYRLAPAICEQIEAQAKALARALGVVGL 876 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ LE+N + T P ++ G ++ Sbjct: 877 MNAQFAV--KGDAIYILEVNPRASRT----VPFVSKATGRPLAKIAAR 918 >gi|220936246|ref|YP_002515145.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7] gi|219997556|gb|ACL74158.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7] Length = 1204 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 16/185 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + ++ + + + +++ Sbjct: 147 ALRIGYPVMLKSTAGGGGIGMQICRSEKQLEEAFHSVERLSRNNFGQGGIFLEKYVEYAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + E V ++ + PA D + ++ A QA+ Sbjct: 207 HLEVQIFGDGEGRVVALGERDCSVQRRNQKVIEETPAPGIDDGLRAQLMDAAVRLGQAVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R ++++D + ++LE+N + G+T G +L+ WMV Sbjct: 267 YRSAGTVEYVYDTRTGAFYFLEVNTRLQVEHGVTE--------EVTGV---DLVAWMVRL 315 Query: 296 ASCLR 300 A+ R Sbjct: 316 AAGER 320 >gi|56750828|ref|YP_171529.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus PCC 6301] gi|81299522|ref|YP_399730.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus PCC 7942] gi|56685787|dbj|BAD79009.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Synechococcus elongatus PCC 6301] gi|81168403|gb|ABB56743.1| carbamoyl-phosphate synthase large subunit [Synechococcus elongatus PCC 7942] Length = 1097 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAQVIERERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + L+ + + + A + D++ K+ + GV VCPS Sbjct: 89 TMGGQTALNLAVALAKNGTLDRFGVELIGAKLEAIEKAEDRLLFKEAMERIGVKVCPSGI 148 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + ++ + + P +I+P G + + L + + Q+L+E Sbjct: 149 ANNMAEAQAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEFELIVQSGLDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + + Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P V +E+N P ++ S + G+ ++ Sbjct: 269 AIAIIREIGVETGGSNIQFAINPQDGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 39.9 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 60/173 (34%), Gaps = 9/173 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H I P V++P + ++ D + + ++ +LI+++++ Sbjct: 727 AHRIGYPTVVRPSYVLGGRAMEIVYSDAELERYMTEAVQVEPDHPILIDKFLENAIEVDV 786 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + ++ + + + S +S LP + + + ++ +A+ Sbjct: 787 --DALADRTGQVVIGGIMEHIEQAGIHSGDSACSLPTVSLNETVLETIRAWTTQLAKALN 844 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ F +V+ LE N + T P ++ G ++ + Sbjct: 845 VIGLMNIQFAV--KDEQVYILEANPRASRT----VPFVSKAIGRPLAKIAARL 891 >gi|332185714|ref|ZP_08387461.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. S17] gi|332014072|gb|EGI56130.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. S17] Length = 1110 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + V ++ +PD Sbjct: 29 SGTQAIKALKEEGYRIVLVNSNPATIMTDPELADATYVEPITPAVVAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + LE + + A + D+ + + + G+ S + Sbjct: 89 TMGGQTALNTALALFHDGTLEKFGVQMIGADAEAIDKAEDRQKFRLAMDKIGLESARSAI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G V + + + ++LIE+ Sbjct: 149 AHTEAEALAGLEKVGLPAIIRPSFTLGGTGGGVAYNREEFIAIVRAGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNSIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + P +++P + ++ Q + + + + +LI+QY D IE+ Sbjct: 740 AERVGYPVLMRPSFVLGGRAMEIVDGPQQLEDYIQTAVQVSGDAPVLIDQYLRDAIEVDV 799 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + +S ++ + P +P +I E++R A + + Sbjct: 800 DAICDGDQVVVAGVLQHIEEAG---VHSGDSACSLPPYSLPEEIIAEIERQAEALARGLN 856 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 RG+ F +V+ +E+N + T P +A G ++ Sbjct: 857 VRGLMNIQFAV--KDGQVYLIEVNPRASRT----VPFVAKAIGTPIAKIAAR 902 >gi|296184871|ref|ZP_06853282.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] gi|296050653|gb|EFG90076.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] Length = 1062 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG A+++ G + I+ + + V ++ +PD Sbjct: 29 SGTQACKAIKEEGIETILINSNPATIMTDSNMADKVYIEPLTLECVKEIIEKERPDGILA 88 Query: 57 VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G +++ +S + A ++ + + ++ +P+ Sbjct: 89 GFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLMIENNQPIPMSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D P +I+P G + + + + Q+L+EQ Sbjct: 149 ATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGIKMSPIGQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G I + + ++ + + Y +++ Sbjct: 209 SVAGW-KELEYEVIRDGKDNCIIICNMENIDPVGIHTGDSIVVAPSQTLRDKEYHMLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +++ G F D S +E+N P ++ S + GY ++ Sbjct: 268 AIDIIRSLKIEGGCNIQFALDTESSNYVVIEVN--PRVSRSS--ALASKATGYPIAKIAS 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV------------LHGNFG 63 A+++ G K I D D + L L D N+ L G Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVEGVIVQLGGQTS 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + A DK R + P +++ + Sbjct: 640 INLAQKLYEKGVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAVEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + V+ + + + ++ + +LI++Y+ G E+ + Sbjct: 700 LQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + T + + + + + G+ Sbjct: 760 DGEDILMPGIMEHVERTG---VHSGDSITVYPYMTLKEETINTLIEYTKKITKNMNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++FD V+ +E+N + T P ++ G ++ Sbjct: 817 VNIQYVFD--GNNVYVIEVNPRASRT----VPILSKVTGVPMVKI 855 >gi|323339842|ref|ZP_08080111.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644] gi|323092715|gb|EFZ35318.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644] Length = 1061 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ SV +L PD Sbjct: 29 SGTQACMALREEGYEVVLVNSNPATIMTDTKIADKVYIEPLTTESVSRILRQEYPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPS 110 L G G + + IL+ L I + + A + D+ + K+++ + +P + Sbjct: 89 TLGGQIGLNLAIALAKTGILDELHIELLGTKLEAIDQAEDREKFKELMQDLNEPIPASKT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + Q + + Q LIE+ Sbjct: 149 VNTVEEALEFADEIGYPVIVRPAFTMGGTGGGMCDNKQQLQEICANGLDLSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S + + +F + + Y+ ++ Sbjct: 209 SIKGYKEVEYEVMRDSANNAMVVCSMENFDPVGIHTGDSIVLAPTQTLTDRE-YQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYEYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQKAGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIELEQPLGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + +++ T L A + P+ + M+ H Sbjct: 639 AINLAAGLEAHGVKVLGTTVEDLDRAEDRELFDQVINNLGLKQPIGKTATTQEQVMECAH 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ D + L ++ +L++ Y++G E + Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNDAELEEYLSHNAKAEIDHPILVDAYLEGYECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P D+ ++ A+ C G Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFSQDVKDQIVEATKKLAVALKCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + + LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFII--HKGEAYVLEVNPRASRT----VPFLSKITGIEMTQVATQVI 860 >gi|296532782|ref|ZP_06895461.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis ATCC 49957] gi|296266890|gb|EFH12836.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis ATCC 49957] Length = 1081 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G++V ++ + + V ++A +PD Sbjct: 29 SGAQACKALRAEGYRVILVNSNPATIMTDPGLADATYIEPITVEMVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ +LE + + D+++ + ++ G+ S + Sbjct: 89 TMGGQTALNTSLKLAEAGVLEKYGCELIGAKAEVIDKAEDRLKFRDAMTKIGIESPRSAI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L+ P VI+P G + + + S + +++LIE+ Sbjct: 149 AHTMEEARAGLELVKLPCVIRPSFTLGGTGGGIAYNREEFEQIVAAGLSASMTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + + Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIVCSIENVDPMGVHTGDSVTVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLREIGVDTGGSNVQFGINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 104/323 (32%), Gaps = 50/323 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETVMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL---------------HGNFGEDGLVQAILELLEIPYTHSGILAS 87 L L + +++ +G + L IP + A Sbjct: 616 RLYFEPLSAEDVISLIRKEQEKGEVLGCIVQYGGQTPLK-LSQALHKAGIPILGTSAEAI 674 Query: 88 ALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145 ++ D+ R +Q++ S G+ + + ++ I P V++P + + Sbjct: 675 DIAEDRERFQQLLKSLGLQQPQNGIVRTLEEAVEEAERIGYPVVVRPSYVLGGRAMEIAY 734 Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + Q + G+ ++ + V A D + Sbjct: 735 NREQLLR-FGQEAVKVSGENPILIDQYLQDAIEVDVDCIADEDGQVYVAGVMEHIEEAGI 793 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + + E++ +A+ RG+ + ++F LE+N + Sbjct: 794 HSGDSACSLPPYSLAPSVITELKAETEAMARALKVRGLMNVQYAV--KDGEIFVLEVNPR 851 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P +A G ++ Sbjct: 852 ASRT----VPFVAKATGVPVAKI 870 >gi|282896367|ref|ZP_06304388.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Raphidiopsis brookii D9] gi|281198655|gb|EFA73535.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Raphidiopsis brookii D9] Length = 1083 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ + GV VCPS Sbjct: 89 TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVSVCPSGT 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +I+P G + + + + Q+LI+ Sbjct: 149 ASTLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFEVMAQVGIDASPVSQILID 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 >gi|167902196|ref|ZP_02489401.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei NCTC 13177] Length = 1084 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|33519597|ref|NP_878429.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia floridanus] gi|33517260|emb|CAD83644.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia floridanus] Length = 1088 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D + + ++ +PD Sbjct: 29 SGTQACRALREEGYRLILVNSNPATIMTDPNMADATYIESIKWEIIYKIIKKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D Q IL+ I S + A + ++ + ++ + G+ V S Sbjct: 89 TMGGQTALNCVLDLDRQGILKEYNIIIIGSTVDAINKAENRKKFQESIKKIGLEVPKSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M I P +I+P G V Q + +LLI++ Sbjct: 149 ACNIDEAMLILENIGLPCIIRPSFTLGGSGGGVAYHVQEFQSICQNGFRLSLNHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + Sbjct: 209 SLIGWKEFEMEVIRDLNDNCIVVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 FMILREIGVRSGGANVQFAVNPDNGRIVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 39.9 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 64/181 (35%), Gaps = 11/181 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179 I P V++P + ++ ++ + L + ++ +L++ +++ IE+ Sbjct: 706 AVNIGYPIVVRPSYVLGGRAMQIVYNEKELLYYLKDAIHVSNHAPVLLDHFLENAIEVDV 765 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D + + +S ++ + + +I ++++ Sbjct: 766 DVVCDGEHVFIGGIMEHIEHAG---VHSGDSACSLPAYTLNREIQDKIRQQVKKIALGFN 822 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW-MVEDASC 298 +G+ +++ +EIN + T P ++ ++ M+ + C Sbjct: 823 IKGLMNVQLAI--QKDEIYIIEINPRASRT----IPFVSKAINVPLAKVGTRVMIGQSLC 876 Query: 299 L 299 Sbjct: 877 N 877 >gi|126439069|ref|YP_001058520.1| carbamoyl phosphate synthase large subunit [Burkholderia pseudomallei 668] gi|126218562|gb|ABN82068.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 668] Length = 1084 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|67921146|ref|ZP_00514665.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Crocosphaera watsonii WH 8501] gi|67857263|gb|EAM52503.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Crocosphaera watsonii WH 8501] Length = 1081 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 98/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVVLVNSNPASIMTDPGMANRTYIEPLTPDMVEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIKKAEDRDLFKEAMNKIGVPVCPSGI 148 Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + S P +I+P G + + + Q+L+E Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +PL+ V +E+N P ++ S + G+ + Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPLNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 36.0 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ P G V L + ++ Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSPECPVQTKIWGTSPDSIDTAED 681 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + +I + + I P V++P + ++ D+ + Sbjct: 682 RERFEKILNDLNIKQPPNGIARSYEESAVVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI++++ + V + + +S + Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLQN-AIEVDVDALCDATGKVVIGGIMEHIEQAGVHSGDS 800 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + V + + + ++ ++ G+ + +V+ LE N + T Sbjct: 801 ACSVPFTTLSSNAIETIRTWTTQLANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857 Query: 271 VSIFPEMAAYAGYSFREL 288 P ++ G ++ Sbjct: 858 ---VPYVSKATGRPLAKI 872 >gi|313205940|ref|YP_004045117.1| carbamoyl-phosphate synthase large subunit [Riemerella anatipestifer DSM 15868] gi|312445256|gb|ADQ81611.1| carbamoyl-phosphate synthase large subunit [Riemerella anatipestifer DSM 15868] gi|315022253|gb|EFT35281.1| Carbamoyl-phosphate synthase large chain [Riemerella anatipestifer RA-YM] gi|325336619|gb|ADZ12893.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Riemerella anatipestifer RA-GD] Length = 1060 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 91/279 (32%), Gaps = 30/279 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++ G++ I+ + V ++ KP G Sbjct: 581 AIKEMGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + DK P+ + + + Sbjct: 641 INLADKLSAHGVKILGTSLEDLDRAENRDKFEKALQELGIPQPLGKTSTSKEEAIAIANE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +Q + + + + +LI++YV G E+ + Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYTEQELTHYMEHAVDASPEHPVLIDRYVTGKEVEVDAIS 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + +++ + + G+ Sbjct: 761 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNLTEKQIHDLEDYTIRLAKGLNVVGL 817 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ D S +VF +E+N P ++ ++ P Sbjct: 818 MNIQYVID-QSGEVFVIEVNPRSSRTVPFLSKITDVPMA 855 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G++V I+ + V ++ +PD Sbjct: 28 SGTQACLSLKEEGYRVILINSNPATIMTDVEIADKVYIEPISLEFVSQIIRKERPDALLP 87 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ +E+ T + A D R VP Sbjct: 88 TLGGQTGLNMAVELEKSGILEECKVEVLGTKLSAINQAEDRDLFRELMRELGEPVPESDI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P +++P G + + + + ++ Q LIE+ Sbjct: 148 VNTVEQALNFANTIGYPVIVRPAFTMGGTGGGIASDETELKEIVANGLKYSPVTQCLIEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + Y+ ++ Sbjct: 208 SIAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNA 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 267 SLKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAA 322 Query: 291 WM 292 + Sbjct: 323 KI 324 >gi|255530040|ref|YP_003090412.1| carbamoyl phosphate synthase large subunit [Pedobacter heparinus DSM 2366] gi|255343024|gb|ACU02350.1| carbamoyl-phosphate synthase, large subunit [Pedobacter heparinus DSM 2366] Length = 938 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A +L++ G +VS I+ + S+ +L K D Sbjct: 29 SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILQERKIDAVLP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + ++A I E + + A + ++ +Q++ GV V S Sbjct: 89 TMGGQTALNLCIEASERGIWEKYGVKVIGVDVAAIEKTENREAFRQLMVDIGVGVATSKI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P VI+P G + K + L + + ++L+EQ Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLGGYGGGFVHKKEEFDQALKRGLEASPTHEVLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I +F + + + Sbjct: 209 AVLGWKEYELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +EIN P ++ S + GY ++ Sbjct: 269 IRMMRAIGNFAGGCNVQFSVNPDNDEIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 79/259 (30%), Gaps = 11/259 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ P L G + ++I T + Sbjct: 611 DKLYFEPVFW---EHVREIIELENPVGVIVQLGGQTALKMAEKLHENGIKIIGTSYNDMD 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + P + + + P +++P G+ ++ Sbjct: 668 VAEDRGRFSDLLKELDIPYPKYGVAENAEEAIVVANEVGYPVLVRPSYVLGGQGMSIVIN 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D+ + +++ G+++LI+ ++D + + I + Sbjct: 728 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEETESDSISDGEDVHIVGLMEHIEP-AGIH 785 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S +S + P + + +++ + +A+ G+ F KV+ +E N + Sbjct: 786 SGDSSAVLPPFSLSEKVMNDMETYSKKIARALNVIGLLNIQFAV--KDEKVYVIEANPRA 843 Query: 267 GMTPVSIFPEMAAYAGYSF 285 T P +A + Sbjct: 844 SRT----VPFIAKAYDVPY 858 >gi|229816276|ref|ZP_04446585.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM 13280] gi|229808127|gb|EEP43920.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM 13280] Length = 1094 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 89/313 (28%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V ++ + + V+ +PD Sbjct: 29 SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITPEFIERVIERERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + +LE + + A D+ V Sbjct: 89 TLGGQTGLNAAVDLARSGVLERYGVEMIGCDLAAIERGEDRKLFNEAMAELGLEVARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + + Q + ++L+E+ Sbjct: 149 AYSVEDALAIVERTGYPCVLRPSFTMGGAGGGIAHDEAELIQIVTQGLELSPAGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I + + + L+ + Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E+ + Sbjct: 327 AVGYTLDEITNDI 339 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 13/272 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ +P L G + ++I T + Sbjct: 628 DRLYFEPVTY---EDVMDIVDAERPVGVITTLGGQTPVNLTRALAESGVKIMGTQPDAID 684 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P I P +++P G+++ Sbjct: 685 FAEDRERFSALLDRLGIMYPPAGMATSFEEAEAVAAQIGYPLLVRPSYVLGGRGMMIAYD 744 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + +++ + + ++++++G + D + + Sbjct: 745 AERLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGENVYIGGILEHIEEAGIHSG 804 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++T + P + ++++ A+G RG+ + ++ +E N + Sbjct: 805 ---DSATCIPPFSFSESLQEKLRETTRRIALALGVRGLVNVQYAV--KGDAIYVIEANPR 859 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T P ++ G ++ A+ Sbjct: 860 ASRT----VPFISKATGVPLARCAARIMAGAA 887 >gi|134299540|ref|YP_001113036.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum reducens MI-1] gi|134052240|gb|ABO50211.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum reducens MI-1] Length = 1071 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + V V+ KPD Sbjct: 30 GTQACRSLKEEGLEVILVNSNPATIMTDANMADKVFIEPLTPEFVTRVIRQEKPDGLLPT 89 Query: 58 LHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + Q +L+ E+ + + A + D+ K ++ VP + Sbjct: 90 LGGQVGLNIALQLAEQGVLDEEEVLLLGTPLDAIRKAEDREMFKLMMEQIAEPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + K + + ++ + Q+L+E+ Sbjct: 150 CSVWEAVEFADDIGYPVIVRPAYTLGGTGGGIAKNQEELKAVAIRGLKHSLIGQILVERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + S D +F + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVIRDSADNCITVCNMENFDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +++G G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRSLGIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 79/288 (27%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I+ V V +L P G Sbjct: 583 ALKEEGIEAITINNNPETVSTDFDTSDRLYFEPLVAEDVMNILEKENPLGVIVQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +I T + A ++ V P + + Sbjct: 643 INLAKPLEKAGYQILGTSVDAIDIAEDRERFDKLLVDLDIPKPPGRTAYSLQEATAIAGE 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +L++ Y+ G E + Sbjct: 703 IGFPVLVRPSYVLGGRAMEIVYSQEELHAYMERAVKVTPDHPVLVDHYMVGKEFEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + S ++ +A+G +G+ Sbjct: 763 DGKTVLIPGIMEHIERAGVHSGDSISVYPAQTLTPTQIEQMVS---YTERLARALGVKGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ +++ +E+N + T P ++ G L Sbjct: 820 VNIQYVLHE--GQIYVIEVNPRSSRT----VPYLSKVTGVPMVNLATK 861 >gi|329571889|gb|EGG53567.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX1467] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGSMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|327401416|ref|YP_004342255.1| carbamoyl-phosphate synthase large subunit [Archaeoglobus veneficus SNP6] gi|327316924|gb|AEA47540.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus veneficus SNP6] Length = 1076 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ PD Sbjct: 29 SGSQACKALREEGYEVVLVNSNPATIMTDPEMADRTYIEPLTADVVARIIERETPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G + + L + G A+ + R + P Sbjct: 89 TLGGQTALNIAVQLGEMGVLDKYGVELIGAKLDAIKKAEDRELFKECMHRIGLEVPRSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + + + +Q+LIE+ Sbjct: 149 ANDISEALSIAEEIGYPVVVRPAFTLGGTGGGIAYNREELKEIAAHGLEMSMINQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 GVIGWKEFELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDWEYQRLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + + +E+N P ++ S + G+ ++ Sbjct: 269 IDIIREIGVETGGSNIQFAVHPTTERFVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 86/289 (29%), Gaps = 31/289 (10%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ G++ ++ V + + KP+ G Sbjct: 590 LKEEGYETIMVNNNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVIVQFGGQTPL 649 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + Q +I T + A ++ P + I Sbjct: 650 NIAKQLESSGAKILGTSVDSIDIAEDRERFAELCNRLGIPQPENGIAHSIEEAKEIAARI 709 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183 P +++P + ++ ++++ + ++ + +LI+++ D IE+ + Sbjct: 710 GYPVLVRPSYVLGGRAMEIVYDEETLERYISEALEVSPEKPILIDKFLEDAIEVEVDALC 769 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S ++ + P + DI + + G+ Sbjct: 770 DGEEVVIGGIMEHIEEAG---VHSGDSACVLPPVSLSQDIIDRIVDYTRKMALELNVVGL 826 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + V+ LE N + T P ++ G ++ + Sbjct: 827 INIQYAV--KDNIVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869 >gi|23098946|ref|NP_692412.1| carbamoyl phosphate synthase large subunit [Oceanobacillus iheyensis HTE831] gi|22777174|dbj|BAC13447.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Oceanobacillus iheyensis HTE831] Length = 1068 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFN 56 SG AL++ G+ V + ++ + ++ PD Sbjct: 29 SGTQACHALKEEGYTVILANSNPATIMTDHTVADKVYMEPLTEEFLTKIIRKENPDAILP 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +++ + + A + R VP Sbjct: 89 TLGGQTGLNLAMELFHKGILEDHQVQLLGSAPASIEKAEDRELFRKLMNELGEPVPESAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D H I P +++P G + ++ + S + +Q LIE+ Sbjct: 149 VHTVEEAFDFAHTIGFPLIVRPAYTLGGTGGGMCYNEEDLKEITKNGLSLSPVNQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + Y ++ Sbjct: 209 NIAG-FKEIEYEVMRDKNDQAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYHLLRNA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + + +E+N P ++ S + GY ++ Sbjct: 268 SLRIIRALEIEGGCNVQLALDPNSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 98/290 (33%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++ G++ ++ + V V+ +P+ G Sbjct: 580 AIKEMGYEAIIMNNNPETVSTDFTISDKLYFEPLTLEDVMHVVELEQPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A DK P ++ +D+ + Sbjct: 640 INLAEGLERRGVRILGTGLDAIDRAEDRDKFEVLLDELDILRPKGKAVPRLDQAIDTANE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ +Q + L +SS + +LI++Y+ G+E+ + Sbjct: 700 IGYPVLVRPSYVIGGSRMEIVYNEQELENYLKKSSHIDSAHPILIDKYLTGMEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P ++ + ++ A +A+ +G+ Sbjct: 760 DGETTIIPGIMEHIERAG---VHSGDSMAVYPPQRLSTTVKEKCLDAAIKISKALQVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ LE+N + T P ++ G + + + Sbjct: 817 INIQFIIREED--VYVLEVNPRASRT----IPFLSKITGITMANIATRCI 860 >gi|330895318|gb|EGH27656.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 651 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWHTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|327396664|dbj|BAK14085.1| urea amidolyase DUR1,2 [Pantoea ananatis AJ13355] Length = 1201 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 16/185 (8%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + P ++K GG +G+ V + + + +++ Sbjct: 144 CRVAETVGYPVMLKSTAGGGGIGMRVCRDAHELTEAFDTVQRLGQNNFSDAGVFLENYIE 203 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236 + + V ++ + PA + + + + A + Sbjct: 204 RARHLEVQIFGDGQGDVIALGVRDCSVQRRNQKVIEETPAPNLPEGMAQALCEAAVALGK 263 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ R +F++D L+++ ++LE+N + G+T ++ G +L+ WM Sbjct: 264 AVNYRSAGTVEFVYDSLNQQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVKWM 312 Query: 293 VEDAS 297 +E A+ Sbjct: 313 IELAA 317 >gi|307273074|ref|ZP_07554320.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0855] gi|306510059|gb|EFM79083.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0855] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S+D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|256964979|ref|ZP_05569150.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704] gi|256955475|gb|EEU72107.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704] Length = 1060 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S+D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|315162367|gb|EFU06384.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0645] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +++ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRSLKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|171778241|ref|ZP_02919447.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282941|gb|EDT48365.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1059 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G AL++ G+ V ++ V +L +PD Sbjct: 30 GTQACLALKEEGYNVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIERAEDRDLFKQLMEELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGIIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ H Sbjct: 639 AINLAESLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAH 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKVQETIANYTKRLAIGLNCYG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|118474608|ref|YP_892697.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40] gi|118413834|gb|ABK82254.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter fetus subsp. fetus 82-40] Length = 445 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 13/254 (5%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109 D F +G E+ I I + + A AL DK ++KQV+ G+PV P Sbjct: 78 DAIFPG-YGFLSENQNFVEICSKHNIKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVPGS 136 Query: 110 --SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 SI I P ++K GG G+ V+++++ + + S Sbjct: 137 DGSIQDIDAAKKLAREIGYPIIVKAAAGGGGRGMRVVEREEDLEKSFWSAESEAMSAFGD 196 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226 Y++ + L V ++ PA I Sbjct: 197 GTMYMEKYISNPRHIEVQVLGDEHGNVVHIGERDCSMQRRHQKLIEESPAVILDDKTRAN 256 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + A A +AIG G +FL+D K +++E+N + + EM +G Sbjct: 257 LHETAVKATKAIGYAGAGTFEFLYDQKDNKFYFIEMNTR--LQVEHCVSEMC--SGL--- 309 Query: 287 ELLLWMVEDASCLR 300 +L+ WM+ A + Sbjct: 310 DLIEWMIRIAQGEK 323 >gi|32267187|ref|NP_861219.1| carbamoyl phosphate synthase large subunit [Helicobacter hepaticus ATCC 51449] gi|32263240|gb|AAP78285.1| carbamoylphosphate synthase [Helicobacter hepaticus ATCC 51449] Length = 1117 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L++ G++V I D D + + ++ K D Sbjct: 29 SGTQAVKTLKNLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIANIITKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ +LE + + + + + +P Sbjct: 89 TMGGQTALNVAMKMFEKGMLENITFLGANPEAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + +++ I P +I+ + G V + + +++LIE+ + Sbjct: 149 TEKEALEAAKEIGFPLIIRASYTLAGGGSGVAYNIDEFKVVAKNGLETSPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPQNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 11/260 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V++ KPD L G I T + ++ A + Sbjct: 622 FEPIDF-EHVRAVISKEKPDGIIVHLGGQTPLKLAHSLTKINAHIIGTSAKVIDIAEDRE 680 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K P H I P +++P + ++ D + Sbjct: 681 KFAQFVNDLGLKQPQNGIAFEKEQAYLVAHKIGFPVLVRPSYVLGGRAMRIVYDDDELKN 740 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + + + +LI+++++ + D D + + + E S +S Sbjct: 741 YMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGKSVYIGGIMEHIEEAGIHSGDSA 797 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 LP+ I + +G G+ + + ++ +E+N + T Sbjct: 798 SSLPSINISKILIDEIEQTTAKIALKLGVVGLMNVQYAI--YNENLYLIEVNPRASRT-- 853 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 854 --VPFVSKATGIPLAKVATR 871 >gi|327460200|gb|EGF06537.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1057] Length = 1059 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSHKVKDTIAEYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|253582330|ref|ZP_04859553.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium ATCC 27725] gi|251835869|gb|EES64407.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium ATCC 27725] Length = 1068 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + +L KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 +++ T + + A ++ + P ++ ++ + Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEALNIARPKGRAVWDISHGIEIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ + + ++ L S + + +LI++Y++GIEL + Sbjct: 701 EIKYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + + E+ + +A+ + Sbjct: 761 CDGEDILI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEAELLEITKKIAKALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ K++ +E+N P ++ VS P Sbjct: 817 GMMNIQFI--AYEHKLYVIEVNPRSSRTVPYISKVSGVP 853 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 90/303 (29%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+A +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITADFVEKVIAKERPDSILA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + IL+ + + I A D+ R + Sbjct: 88 GMGGQTALNMAVELSEKGILKKYGVKVIGTPIEAIKRGEDRELFREAMEKIGEPIIQSKI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + L++ + + Q+LIE+ Sbjct: 148 VENLEDGFKVASEIGYPVVVRPAYTLGGTGGGFAYNPKELEDILMKGLALSRVGQVLIEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++ Sbjct: 208 SILG--WKEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A IG G F P S + +EIN P ++ S + GY + Sbjct: 266 SAIKIVNEIGVIGGCNVQFSLHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TRL 324 >gi|139439440|ref|ZP_01772881.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC 25986] gi|133775219|gb|EBA39039.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC 25986] Length = 1104 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 89/313 (28%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ GF+V ++ + + V+ +PD Sbjct: 29 SGAQACKVLKEDGFEVILVNSNPATIMTDPGLADRTYVEPITAEFIERVIKKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + L+ + + A D+ V Sbjct: 89 TLGGQTGLNAAVELAKDGTLDKYGVEMIGCDLAAIERGEDRKLFNEAMAEIGLEVARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G + + + + Q + ++L+E+ Sbjct: 149 AYSVADAEAIAERVGYPCVLRPSFTLGGAGGGIAHAHEELVSIVSQGLELSPAHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + I + + + L+ + Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRVAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P + ++ +E+N P ++ S + AA Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQTGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIVNDI 339 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 10/254 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V V+ +PD L G + I T + A ++ + Sbjct: 636 EDVMDVIDVERPDGVVVTLGGQTPLKLARMLEESGVNIMGTKPDAIDFAEDRERFAALLD 695 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P I P +++P G+++ + + + +++ Sbjct: 696 KLGIMYPPAGQATSFEEAEAVAAHIGYPLLVRPSYVLGGRGMMIAYDAEHLRDYMAEAAR 755 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + + ++++++G IE + D + + ++T + P Sbjct: 756 ISPDYPVYLDRFLEGAIESDVDALCDGEEVYIGGILEHIEEAGIHSG---DSATCIPPFS 812 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + +++ A+G RG+ + V+ +E N + T P ++ Sbjct: 813 FSESLQAKLRETTRRIAMALGVRGLVNVQYAI--KGETVYVIEANPRASRT----VPFIS 866 Query: 279 AYAGYSFRELLLWM 292 G + + Sbjct: 867 KATGVPLAKCAARI 880 >gi|327489732|gb|EGF21522.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1058] Length = 1059 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITPEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|281491906|ref|YP_003353886.1| carbamoyl-phosphate synthase, large chain [Lactococcus lactis subsp. lactis KF147] gi|281375615|gb|ADA65119.1| Carbamoyl-phosphate synthase, large chain [Lactococcus lactis subsp. lactis KF147] Length = 1064 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + I+ + V ++ +P+ G Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A D P + + + Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +I+P + +I ++ + + ++ + +L++ Y+ G E Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + P +I + + C Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ +L M+ Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114 L G G + ++ I L E+ G SA+ + R + Sbjct: 90 LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149 Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q LIE+ Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|254524347|ref|ZP_05136402.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp. SKA14] gi|219721938|gb|EED40463.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp. SKA14] Length = 1090 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + +V ++A KPD Sbjct: 39 SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 98 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 99 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 158 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T+D I P +I+P G + + + + + + ++L+E+ Sbjct: 159 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 218 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 279 IAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334 Query: 291 WM 292 + Sbjct: 335 KL 336 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 598 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLARE 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + C V Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVECDVDI 776 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + + E++R +A+ G+ Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGL 836 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F D + ++ LE+N + T P ++ G ++ Sbjct: 837 MNTQFAIQSSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 883 >gi|196228041|ref|ZP_03126908.1| carbamoyl-phosphate synthase, large subunit [Chthoniobacter flavus Ellin428] gi|196227444|gb|EDY21947.1| carbamoyl-phosphate synthase, large subunit [Chthoniobacter flavus Ellin428] Length = 1109 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + VG ++ KPD Sbjct: 29 SGVQACKALKEEGYEVVLVNSNPATIMTDPEFAHRTYIEPITPEVVGKIIEAEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G +L+ + + A D+ K+ + G+ + S Sbjct: 89 TLGGQTALNCSMKLHELGVLQKHNVRMIGAKPEAIHKGEDRQAFKEAMIKIGLDLPRSGT 148 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + + P +I+P G + + + + + + ++LIE Sbjct: 149 AHTMEEGRKVAAEIGTMPLIIRPAFTLGGSGGGIAYNKEEFEIIVARGLDLSPVSEVLIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + Sbjct: 209 ESLLGWKEFEMEVMRDKADNCVIICSIENVDPMGVHTGDSITVAPAQTLSDREYQNMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 SFAVIREIGVETGGSNIQFAIEPNTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 85/296 (28%), Gaps = 34/296 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL++ GF+ + D D S L L + N+ Sbjct: 615 ALKELGFETIMVNSNPETVSTDYDTSDKLYFEPLTLEDVLNICEQESENLFGVIVQFGGQ 674 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121 + LE +P + + ++ D+ ++ G+ + Sbjct: 675 TPLNLAKGLEEAGVPIIGTSPKSIEIAEDRKLFGAMLDKLGIRQTAGGTAVTEDQAVTAA 734 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P G+ ++ + + + ++ G ++ Sbjct: 735 NTVGYPVLVRPSFVLGGRGMQLVHTEADLRKYVREAIEAAPGATPNTASNPILVDHFLED 794 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNS-----THVLPAKIPLDIYKEVQRLAFLAHQ 236 + +D E + + P + ++ E+ + + Sbjct: 795 ALEIDVDCISDGQTVVIGAIMEHIEEAGIHSGDSACAIPPFSLKEEVKAEITKATKAMAK 854 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +G+ F V+ LE+N + T P ++ G +L + Sbjct: 855 ELHVKGLMNVQFAV--KDDVVYVLEVNPRASRTA----PFVSKAIGVPLPKLAAKI 904 >gi|15673345|ref|NP_267519.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis subsp. lactis Il1403] gi|22095527|sp|Q9CFV2|CARB_LACLA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|12724347|gb|AAK05461.1|AE006368_5 carbamoylphosphate synthetase [Lactococcus lactis subsp. lactis Il1403] Length = 1064 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + I+ + V ++ +P+ G Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A D P + + + Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +I+P + +I ++ + + ++ + +L++ Y+ G E Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + P +I + + C Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ +L M+ Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114 L G G + ++ I L E+ G SA+ + R + Sbjct: 90 LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149 Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q LIE+ Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|332362145|gb|EGJ39947.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK49] Length = 1059 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|327470856|gb|EGF16312.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK330] Length = 1059 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|291519738|emb|CBK74959.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio fibrisolvens 16/4] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 82/255 (32%), Gaps = 9/255 (3%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + V ++ KPD A G + + I T + + +A + Sbjct: 617 NEDVESIVNLEKPDGAIVQFGGQTAIKLTEHLMKIGVPILGTKAEDVDAAEDRELFDEIL 676 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + ++ + + + P +++P G+ + D I + + Sbjct: 677 EKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMQIAFNDDEIEKFMDIIN 736 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 +L+++Y+ G E+ + D + + + + + Sbjct: 737 QIAQDHPILVDKYLQGKEIEVDAICDGENILIPGIMEHIERTGIHSG---DSISVYPAHT 793 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I DI ++ +A+ G+ F+ + +V+ +E+N + T P ++ Sbjct: 794 ISQDIKDKIVDYTERLAKALHVLGMINIQFI--AMDGEVYVIEVNPRSSRT----VPYIS 847 Query: 279 AYAGYSFRELLLWMV 293 G +L + Sbjct: 848 KVTGIPIVDLAAKAI 862 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGMEVCLVNSNPATIMTDKEIADQVYIEPLTVDVLKQIIIKEKPDSLLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111 L G G + ++ LE + + + D+ K + V + Sbjct: 90 LGGQAGLNLGMELAESGFLEEQGVKLIGTTAETIFRAEDRQAFKDTMEKLGEPVAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + L + ++L+E+ Sbjct: 150 NTVEDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNQTELVEILTNGLRLSRVHEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LRIIDELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|315150764|gb|EFT94780.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0012] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|312127564|ref|YP_003992438.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor hydrothermalis 108] gi|311777583|gb|ADQ07069.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1075 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ K D Sbjct: 29 SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKEKVDSILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVIPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + S++ Q+L+E+ Sbjct: 149 VNSVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGFTLDEIENAITK 340 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + L G K I D D S L L + NV+ Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVQAEGVIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + P + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLSIKRPPGFTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALEIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNDHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I +++ Sbjct: 756 IEVDAISDGKDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|307269527|ref|ZP_07550866.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX4248] gi|306514147|gb|EFM82723.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX4248] gi|315147411|gb|EFT91427.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX4244] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|307289254|ref|ZP_07569210.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0109] gi|306499963|gb|EFM69324.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0109] gi|315163868|gb|EFU07885.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX1302] Length = 1066 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEEVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + +S + P + +I + + C G Sbjct: 765 CDGEIVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQTTIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|257416236|ref|ZP_05593230.1| carbamoyl-phosphate synthase [Enterococcus faecalis AR01/DG] gi|257158064|gb|EEU88024.1| carbamoyl-phosphate synthase [Enterococcus faecalis ARO1/DG] Length = 1060 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + Q+ + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRQAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|257079157|ref|ZP_05573518.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1] gi|294779374|ref|ZP_06744775.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis PC1.1] gi|256987187|gb|EEU74489.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1] gi|294453503|gb|EFG21904.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis PC1.1] Length = 1060 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|78779359|ref|YP_397471.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus str. MIT 9312] gi|78712858|gb|ABB50035.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus str. MIT 9312] Length = 1098 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL AG+++ I+ + + + ++ KPD Sbjct: 29 SGTQACKALRKAGYEIILINSNPASIMTDPEVASKTYIEPLTPEIISQIILREKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ + + + A + D+ K+ + V VCPS + Sbjct: 89 TMGGQTALNLAVKLSESDFLKKNNVELIGADLKAINKAEDRKLFKESMEKINVNVCPSGI 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P +G + + + DQ+LIE Sbjct: 149 ASNLAEAKEVQKKINSYPLIIRPAFTLGGVGGGIAFNLEEFIELCTTGLEESPRDQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDM 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAINPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 Score = 39.9 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 10/178 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++K + + + ++ + +L++QY++ Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYISEAVKVSPDHPILLDQYLNNAIEIDV 783 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + + S +S LP+ + V+ L Q + Sbjct: 784 --DALCDSEGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSESTIDNVKTWTKLIAQKLN 841 Query: 240 CRGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+ F + K+F LE N + T P ++ G +L +++ Sbjct: 842 VVGLINLQFAVTNLNNKENKLFILEANPRASRT----VPFVSKAIGKPVAKLATQLMQ 895 >gi|77408053|ref|ZP_00784801.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae COH1] gi|77173318|gb|EAO76439.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae COH1] Length = 1060 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 94/291 (32%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +KV+ +E+N + G T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRAGRT----LPFLSKVTHIPMAQVATKVI 860 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|313201619|ref|YP_004040277.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp. MP688] gi|312440935|gb|ADQ85041.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp. MP688] Length = 1069 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ + G++ + D D V ++A KP G Sbjct: 582 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + ++ ++ +L++++++ Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 DV + + + S S P + + E++ +A+G G+ Sbjct: 762 SDGEDVIIGGIMEHIEQAGVHSGDSACSLP--PYSLTQAMQDELRVQTVQMAKALGVVGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F V+ LE+N + T P ++ G ++ Sbjct: 820 MNVQFAI--QGDVVYVLEVNPRASRT----VPFVSKACGLQLAKVAAR 861 >gi|253999584|ref|YP_003051647.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp. SIP3-4] gi|253986263|gb|ACT51120.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp. SIP3-4] Length = 1069 Score = 62.6 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + K ++ G+ S Sbjct: 89 TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 29/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+ + G++ + D D V ++A KP G Sbjct: 582 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + ++ ++ +L++++++ Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 DV + + + S S P + + E++ +A+G G+ Sbjct: 762 SDGEDVIIGGIMEHIEQAGVHSGDSACSLP--PYSLTQAMQDELRVQTVQMAKALGVVGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F V+ LE+N + T P ++ G ++ Sbjct: 820 MNVQFAI--QGDVVYVLEVNPRASRT----VPFVSKACGLQLAKVAAR 861 >gi|330981078|gb|EGH79181.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 583 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ PS Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPPSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|262091722|gb|ACY25312.1| carbamoyl-phosphate synthase large subunit [uncultured actinobacterium] Length = 1098 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFN 56 SG L + G++V D D + ++ KPD Sbjct: 29 SGTQACRVLREEGYRVILANSNPATIMTDPDFADRTYIEPLTVEVLSAIIDREKPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI-------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 L G + ++ E+ ++ +A+A +K + + VP Sbjct: 89 TLGGQTALNLAMELFAIGKVGVPGTPELIGANAEAIATAEDREKFKLAMIEIGLKVPRSG 148 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + I P +I+P G + + + + ++LIE Sbjct: 149 VAHNMQEAEKVCLQIGLPIIIRPAYILGGRGTGIAHTPEEFTRLAANGIAASPIGEILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + ++ Sbjct: 209 ESIAGWKEYELEVMRDKADNCVIICSIENVDPMGVHTGDSITVAPAMTLSDVEYQVMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G S F +P + +E+N P ++ S + G+ ++ Sbjct: 269 AFACIRRVGVETGGSNVQFAVNPKNGDQVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 90/305 (29%), Gaps = 38/305 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75 AL +AG++ + D D S L L + NV+ + ++ L Sbjct: 589 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTREDVMNVIEAESRASQIPPRVIVSL 648 Query: 76 E---------------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 I TH + A +K + P + L + Sbjct: 649 GGQTPLKLANLIPSELIAGTHPSSIDLAEDREKWSALCNSLGIAQPPGGTALSYEEALVV 708 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--------SSSWNHGDQLLIEQYV 172 + P +++P + ++ D + + + ++ ++ Sbjct: 709 AKQVGYPVLVRPSYVLGGRAMQIVHDDAHLQRAMQEIAAAGSLGREGGLSFERPVLIDRF 768 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 V + + +S ++ + P + + + V+ Sbjct: 769 LDDATEIDVDAIRDSVGEVLIGGVMEHVEEAGVHSGDSACAIPPPTLEPWVIEAVESYTR 828 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + QA+G G+ F V+ +E N + T P +A G S ++ + Sbjct: 829 VIAQALGVIGLINVQFAV--AGNAVYVIEANPRASRT----VPFVAKATGVSLAKVASRV 882 Query: 293 VEDAS 297 + AS Sbjct: 883 MLGAS 887 >gi|89894788|ref|YP_518275.1| hypothetical protein DSY2042 [Desulfitobacterium hafniense Y51] gi|89334236|dbj|BAE83831.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1079 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL + G +V ++ + ++ +LA +PD Sbjct: 30 GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGILAQERPDALLPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + ++ + A + + + + + Sbjct: 90 LGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETMLEIGEPLAESAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G K ++ + L + + Q L+E+ Sbjct: 150 TSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQASPIHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + ++D + + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDAMDNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDGE-YQMLRSSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+G G F DP SR+ +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGVNGGCNVQFALDPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 32/286 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D V ++ K D G Sbjct: 580 ALQELGIESIMINNNPETVSTDFDTGDKLYFEPLTLEDVLHIIEKEKADGVLVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I + + A ++ + + Sbjct: 640 INLASPLQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARTIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + V++ + L Q+ + + +L+++Y++G E+ + Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVENFAELESYLTQAITLSPEHPILVDRYLEGKEVEVDAVA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + V P + S +S V P + +++Q + + RG Sbjct: 760 DGEITVI----PGIMEHIERAGVHSGDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ ++ KV+ +E+N + T P ++ G L Sbjct: 816 LLNIQFVV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855 >gi|219669223|ref|YP_002459658.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium hafniense DCB-2] gi|219539483|gb|ACL21222.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium hafniense DCB-2] Length = 1079 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL + G +V ++ + ++ +LA +PD Sbjct: 30 GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGILAQERPDALLPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + ++ + A + + + + + Sbjct: 90 LGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETMLEIGEPLAESAIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +++P G K ++ + L + + Q L+E+ Sbjct: 150 TSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQASPIHQCLLERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + ++D + + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDAMDNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDGE-YQMLRSSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+G G F DP SR+ +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGVNGGCNVQFALDPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 32/286 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + I D D V ++ + D G Sbjct: 580 ALQELGIESIMINNNPETVSTDFDTGDKLYFEPLTLEDVLHIIEKEEADGVLVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I + + A ++ + + Sbjct: 640 INLASPLQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARAIAGE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + V++ + L ++ + + +L+++Y++G E+ + Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVEDLAELEGYLTRAITLSPEHPILVDRYLEGKEVEVDAIA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + V P + S +S V P + +++Q + + RG Sbjct: 760 DGEITVI----PGIMEHIERAGVHSGDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ ++ KV+ +E+N + T P ++ G L Sbjct: 816 LLNIQFVV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855 >gi|327535280|gb|AEA94114.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis OG1RF] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|315172444|gb|EFU16461.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX1346] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|315168886|gb|EFU12903.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX1341] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|315156134|gb|EFU00151.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0043] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|315037128|gb|EFT49060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0027] gi|315169607|gb|EFU13624.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX1342] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|315027872|gb|EFT39804.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX2137] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|313158536|gb|EFR57930.1| carbamoyl-phosphate synthase, large subunit [Alistipes sp. HGB5] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 32/295 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ IL+ ++ + + + D+ + V Sbjct: 90 LGGQTGLNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVIESKIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G ++ + + + + Q+L+E+ Sbjct: 150 MSVEEAVEVAAEIGYPVVLRPAYTLGGTGGGFADNEEQLREMMRHALFLSPVHQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I++ + ++ + + ++ ++ A Sbjct: 210 IKG-YKEIEFEVMRDHNDTAISICCMENIDPVGVHTGDSIVVAPCQTLTNKEFQMLRDSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + + G F DPLS K + +E+N P ++ S + +GY Sbjct: 269 LKIIRELKIEGGCNVQFALDPLSFKYYLIEVN--PRVSRSS--ALASKASGYPIA 319 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 29/289 (10%) Query: 26 LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64 + +AG++ I D S L L + NV+H G Sbjct: 578 IREAGYEAIIINNNPETVSTDYTTSDKLYFEPLMVEDVMNVIHLEKPKAIVVSLGGQTAI 637 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + +A P ++ + + I Sbjct: 638 NLAEPLSRLGVPIIGTDCEAIRNAEDRGCFEKIMEELRIPQPEAEAVTDIESGVKAAARI 697 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P + ++ ++ + L + N +L+++Y+ G EL + D Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNDDSPVLVDRYIMGKELEVDAICD 757 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + + + + + ++ IG G+ Sbjct: 758 GKDVFIPGIMEHVERTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVKLGLRIGIIGLY 814 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D + +V+ +E+N + T P ++ G + ++ Sbjct: 815 NIQFILDG-NDEVYVIEVNPRSSRT----VPFLSKSTGVPMAHIATQVI 858 >gi|312901879|ref|ZP_07761144.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0470] gi|311291072|gb|EFQ69628.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0470] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGEECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|312903464|ref|ZP_07762644.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0635] gi|310633340|gb|EFQ16623.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0635] gi|315577840|gb|EFU90031.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0630] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|307275823|ref|ZP_07556962.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX2134] gi|306507515|gb|EFM76646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX2134] gi|315032024|gb|EFT43956.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0017] gi|315144955|gb|EFT88971.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX2141] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|295113098|emb|CBL31735.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Enterococcus sp. 7L76] Length = 416 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|293383487|ref|ZP_06629400.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis R712] gi|293388858|ref|ZP_06633344.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis S613] gi|312907684|ref|ZP_07766675.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis DAPTO 512] gi|312910302|ref|ZP_07769149.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis DAPTO 516] gi|291079278|gb|EFE16642.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis R712] gi|291081783|gb|EFE18746.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis S613] gi|310626712|gb|EFQ09995.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis DAPTO 512] gi|311289575|gb|EFQ68131.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis DAPTO 516] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|257419441|ref|ZP_05596435.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis T11] gi|257422467|ref|ZP_05599457.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis X98] gi|257161269|gb|EEU91229.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis T11] gi|257164291|gb|EEU94251.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis X98] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|257090030|ref|ZP_05584391.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188] gi|256998842|gb|EEU85362.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|257087002|ref|ZP_05581363.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6] gi|256995032|gb|EEU82334.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|257085039|ref|ZP_05579400.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1] gi|256993069|gb|EEU80371.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMQHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|257082407|ref|ZP_05576768.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol] gi|256990437|gb|EEU77739.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|256961781|ref|ZP_05565952.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96] gi|256952277|gb|EEU68909.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|256853271|ref|ZP_05558641.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis T8] gi|256711730|gb|EEU26768.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis T8] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|256762645|ref|ZP_05503225.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3] gi|256959125|ref|ZP_05563296.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5] gi|256683896|gb|EEU23591.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3] gi|256949621|gb|EEU66253.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|256619209|ref|ZP_05476055.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200] gi|256598736|gb|EEU17912.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|255972648|ref|ZP_05423234.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1] gi|255963666|gb|EET96142.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1] gi|323480875|gb|ADX80314.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Enterococcus faecalis 62] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|300860878|ref|ZP_07106965.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TUSoD Ef11] gi|300849917|gb|EFK77667.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TUSoD Ef11] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|229545672|ref|ZP_04434397.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis TX1322] gi|307291846|ref|ZP_07571717.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0411] gi|229309240|gb|EEN75227.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis TX1322] gi|306497112|gb|EFM66658.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0411] gi|315029551|gb|EFT41483.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX4000] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|229549864|ref|ZP_04438589.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis ATCC 29200] gi|312951646|ref|ZP_07770541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0102] gi|229305133|gb|EEN71129.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis ATCC 29200] gi|310630363|gb|EFQ13646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0102] gi|315152333|gb|EFT96349.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0031] gi|315158224|gb|EFU02241.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0312] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|227518905|ref|ZP_03948954.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis TX0104] gi|227073594|gb|EEI11557.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis TX0104] gi|315576074|gb|EFU88265.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0309B] gi|315580649|gb|EFU92840.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0309A] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|225350763|ref|ZP_03741786.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158219|gb|EEG71461.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1126 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|29376268|ref|NP_815422.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis V583] gi|81838905|sp|Q834E2|CARB_ENTFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|29343731|gb|AAO81492.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis V583] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|18397283|ref|NP_564338.1| CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic [Arabidopsis thaliana] gi|9972356|gb|AAG10606.1|AC008030_6 carbamoyl phosphate synthetase large chain (carB) [Arabidopsis thaliana] gi|14194125|gb|AAK56257.1|AF367268_1 At1g29900/F1N18_6 [Arabidopsis thaliana] gi|1477480|gb|AAB67843.1| carbamoyl phosphate synthetase large chain [Arabidopsis thaliana] gi|22137066|gb|AAM91378.1| At1g29900/F1N18_6 [Arabidopsis thaliana] gi|332193027|gb|AEE31148.1| carbamoyl phosphate synthetase B [Arabidopsis thaliana] Length = 1187 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V V+ +PD Sbjct: 120 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 179 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V LE + + + A + D+ K + + G+ PS + Sbjct: 180 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGI 239 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + + Q+L+E Sbjct: 240 GTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVE 299 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 300 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDY 359 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 360 SIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 415 Query: 290 LWM 292 + Sbjct: 416 AKL 418 >gi|115400331|ref|XP_001215754.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624] gi|114191420|gb|EAU33120.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624] Length = 720 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57 E++L G+ A G +V+ + D A P AFN+ Sbjct: 49 EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103 Query: 58 --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +H G E+ + + A DK +SK ++++ GVP Sbjct: 104 AKREGCQGIHPGYGFLSENSAFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 163 Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157 P I P +IK +KGG G+ + + + L Sbjct: 164 CVPGYHGENQDPHFLEAEADKIKYPVLIKAIKGGGGKGMRIAQSKEEFQAQLQSAKSEAM 223 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +S+ L+ + + V D + + K + LP Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 283 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 D++ + + A +G G +F+FD + + F++E+N + Sbjct: 284 ATRKDLWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 327 >gi|251779748|ref|ZP_04822668.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084063|gb|EES49953.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1069 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 95/300 (31%), Gaps = 32/300 (10%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ + + D+ V ++ P G Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++ T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLEKLDISRPKGKGIWSVEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + + +LI++Y+ G E+ Sbjct: 700 ARKLGFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P++ +I ++ AIG Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +G+ F+ ++ +E+N + T P ++ +G ++ ++ A Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRT----VPYISKVSGVPIVDIATQVMLGAKLN 869 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V I+ + + V+A KPD Sbjct: 29 SGTQACEALKSEGVEVILINSNPATIMTDKEVADKVYLEPLTLEFIEKVIAKEKPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G G + V+ L+ + + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P + + +EIN P ++ S + GY +L Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|331016637|gb|EGH96693.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1073 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEASAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|307277918|ref|ZP_07559002.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0860] gi|306505315|gb|EFM74501.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis TX0860] Length = 1066 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 36 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 96 LGGQTGLNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330 Query: 292 M 292 + Sbjct: 331 I 331 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866 >gi|302185421|ref|ZP_07262094.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. syringae 642] Length = 1073 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|300703810|ref|YP_003745412.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Ralstonia solanacearum CFBP2957] gi|299071473|emb|CBJ42793.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Ralstonia solanacearum CFBP2957] Length = 1081 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875 >gi|255975700|ref|ZP_05426286.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2] gi|255968572|gb|EET99194.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2] Length = 1060 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + Y+ ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860 >gi|253826206|gb|ACT36390.1| carbamoyl phosphate synthase large subunit [uncultured bacterium L11E10] Length = 1080 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++A +PD Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLDKYNVELIGARREAIMMAEDRELFRVAMAEIGLECPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + ++L+E+ Sbjct: 149 ARSFEQAVEIQATVGYPTIIRPSFTLGGSGGGIAYNREEFEDIIKRGLELSPVHEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F + + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.2 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G++ + D D V ++ KP G Sbjct: 588 ALRADGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQGLVDRLGLKQPPNRIARNDQQALLLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R +A+ G+ Sbjct: 767 IADKDGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAQTQAELRRQVVELARALNVVGL 826 Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G + ++ Sbjct: 827 MNTQFAIQAGDDGQDIVYLLEVNPRASRT----VPFVSKATGMALAKIAAR 873 >gi|207723991|ref|YP_002254389.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein [Ralstonia solanacearum MolK2] gi|207742901|ref|YP_002259293.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein [Ralstonia solanacearum IPO1609] gi|206589199|emb|CAQ36161.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein [Ralstonia solanacearum MolK2] gi|206594296|emb|CAQ61223.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein [Ralstonia solanacearum IPO1609] Length = 1081 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875 >gi|94311131|ref|YP_584341.1| carbamoyl phosphate synthase large subunit [Cupriavidus metallidurans CH34] gi|93354983|gb|ABF09072.1| carbamoyl-phosphate synthase large subunit [Cupriavidus metallidurans CH34] Length = 1082 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + D + V ++ +PD Sbjct: 29 SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMDEAVAVQSRIAQETGTAGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPTDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 94/291 (32%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + E++R +A+ G Sbjct: 772 CDGTRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQRNGEDIVYVLEVNPRASRT----VPYVSKATGLSLAKIAAR 875 >gi|66047418|ref|YP_237259.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. syringae B728a] gi|289676013|ref|ZP_06496903.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. syringae FF5] gi|63258125|gb|AAY39221.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Pseudomonas syringae pv. syringae B728a] gi|330937935|gb|EGH41722.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. pisi str. 1704B] gi|330969640|gb|EGH69706.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1073 Score = 62.6 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|229817328|ref|ZP_04447610.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM 20098] gi|229785117|gb|EEP21231.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM 20098] Length = 1127 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILERIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + +L+ + + + A D+ K+VV G S + Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEKAGAESARSQI 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSLAEVDKIAEEFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|146296939|ref|YP_001180710.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410515|gb|ABP67519.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1075 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 98/318 (30%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ K D Sbjct: 29 SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIERIIQKEKVDSILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + IL+ + + I A + D+ + + V Sbjct: 89 TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + S++ Q+L+E+ Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEGEFLEIARRGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 95/266 (35%), Gaps = 21/266 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V V+ +K + G + L I + ++ D+ R + Sbjct: 619 KEDVLNVIETVKAEGVIVQFGGQ--TAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDK 676 Query: 99 VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 +++ + P + + + + P +++P G+ + D I L Sbjct: 677 ILNKLNIKRPPGFTCYTLQEALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSY 736 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + + + +LI++Y+ G E+ + D + P + S +S + P Sbjct: 737 AKN-LNSHPILIDKYIVGKEIEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYP 791 Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP 270 A+ I + + + + C+G+ F+ + +++ +E+N P ++ Sbjct: 792 ARNISKYIEERIVEYTLKIARELECKGLMNVQFIV--QNEELYVIEVNPRGSRTVPFLSK 849 Query: 271 VSIFPEMAAYA----GYSFRELLLWM 292 V+ P + GY ++L+ + Sbjct: 850 VTGVPMVELATMVSLGYRLKDLVTTI 875 >gi|206901331|ref|YP_002251484.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus thermophilum H-6-12] gi|206740434|gb|ACI19492.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus thermophilum H-6-12] Length = 1054 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + V ++ KPD Sbjct: 26 SGTQACKALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVVERIIEKEKPDGIIA 85 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ ILE +P + + + +++ D+ R + V Sbjct: 86 TLGGQTGLNLAMELASAGILEKYGVPLLGASLESISMAEDRELFRKRMEEIGEPVLPSVV 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +I P VI+P G +++ + LL+S + Q L+E+ Sbjct: 146 VRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVETFEEFEKALLRSLRLSPVSQALLEK 205 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + ++ Y+ ++ Sbjct: 206 SVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHTGDSIVVAPTQTLTDIE-YQMLRTA 264 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G + +P R+ + +E+N P ++ S + G+ L Sbjct: 265 SLKIITALKIEGGCNIQYALNPNKREYYVIEVN--PRVSRSS--ALASKATGFPIARLTA 320 Query: 291 WM 292 + Sbjct: 321 KI 322 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 40/297 (13%) Query: 24 SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNFGE 64 A+++ G I D D S L L + N++ Sbjct: 578 KAIKEEGLVSIMINNNPETLSTDFDMSDRLYFEPLTSEDVTNIMEQEEPLGFLSQFGGQT 637 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQH 122 + LE + + L+ D+ + + + +P I + Sbjct: 638 SINLSKNLEKRGFYLLGTSQKSIDLAEDREKFDRFLKRNKIPRPKGFYIRSLEEAKEVIE 697 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P +I++ + + + L ++Q++ G E ++ Sbjct: 698 EIGFPVLLRPSYVLGGRAMIIVHNMKDLEDYFERKDIIL---PLWMDQFIVGKEAEVDLL 754 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241 D P + + S +ST V P ++ ++ + + + Sbjct: 755 CDGKEVFI----PGVMEHIEKAGIHSGDSTTVFPHYTLSQEVIDKIVDYSTKIALGLEVK 810 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA-----GYSFREL 288 G+ ++ +V+ LE N P ++ P + YA GYS R+L Sbjct: 811 GLLNIQYVISSKDEEVYVLEANPRASRTIPYLSKALKLP-LVKYATKVALGYSLRDL 866 >gi|260903820|ref|ZP_05912142.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium linens BL2] Length = 1091 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56 SG L + G +V I+ +D + ++ +PD Sbjct: 29 SGTQACRVLREEGLRVILINSNPATIMTDPDVADATYVEPIDPDIIESIIEKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ++ LE + + + A D+ + K +V CG S++ Sbjct: 89 TLGGQTALNAAIELHDAGTLEKYGVELIGADVEAIQRGEDRQKFKTIVEECGAESAKSVI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P V++P LG + + + + ++L+E+ Sbjct: 149 CHTIDEALAGAEELNYPVVVRPSFTMGGLGSGMAYDEADLRRIAGAGLGDSMNHEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + K Sbjct: 209 SILGWKEYELELMRDHKDNVVVICSIENVDPVGVHTGDSITVAPSLTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G + DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IDVIRAVGVATGGCNIQYAVDPKTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKMAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|310829435|ref|YP_003961792.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum KIST612] gi|308741169|gb|ADO38829.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum KIST612] Length = 1068 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 92/292 (31%), Gaps = 30/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 CA AL++ G++ + D D V ++ KPD A G Sbjct: 580 CAWALKELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRSIVETEKPDGAIVQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + I T + +A + + P ++ + Sbjct: 640 QTAIKLTKHLDEINVGILGTDPKYIDAAEDRELFDDLLERCAIPRPKGETVYTTEEAVKV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P +I+ ++ + + + + +LI++Y+ G E+ Sbjct: 700 AERLGFPVLLRPSYVLGGQNMIIAYEEADVVEYMNIITEHELENPVLIDKYLMGTEVEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + + P + +I + + + Sbjct: 760 AICDGTDYLIPGIMEHIEKAG---VHSGDSISVYPPQTLSQEIKDTIIDYTGKLAKELHV 816 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ ++ +V+ +E+N + T P ++ L + Sbjct: 817 IGLVNIQYVV--YEGEVYVIEVNPRSSRT----VPYISKVTDIPMVNLATRI 862 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 95/312 (30%), Gaps = 41/312 (13%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL+ G +V I+ + + V V+ KPD + Sbjct: 30 GTQACKALKAVGLEVILINSNPATIMTDKAMADKIYIEPLTLDVVKRVILLEKPDSILST 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G +Q +++ + + A + + V + Sbjct: 90 LGGQTGLTLSMQLAKEGFLDEHNVKLLGANVETIDKAEDRQEFKDMMKEIGEPVIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + P +++P G + + + + Q+L+E+ Sbjct: 150 TTVDDALDFASTMGYPVIVRPAFTLGGTGGGIADNPEQLHEIATHGLRLSPITQILVERG 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S +F ++ + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVMRDSKGNVITVCSMENFDP-VGIHTGDSIVVAPCQTLSDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA--Y 280 A+G G F DP + +E+N P ++ S ++A+ Sbjct: 269 LKIISALGVEGGCNCQFALDPENFNYAVIEVN--PRVSRSSALASKATGYPIAKIASLIA 326 Query: 281 AGYSFRELLLWM 292 G+S E++ + Sbjct: 327 VGFSLDEIINDI 338 >gi|229086451|ref|ZP_04218623.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44] gi|228696768|gb|EEL49581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44] Length = 1016 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSETLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILDECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|319936904|ref|ZP_08011315.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1] gi|319808003|gb|EFW04578.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1] Length = 1072 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 110/304 (36%), Gaps = 35/304 (11%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+K+ + DV + ++ +PD Sbjct: 29 SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNLDRLTQIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ++ L+ + + A D++ K+ ++ G+ + S + Sbjct: 89 NLGGQSALNLCLELQEAGVLDKYNVKVLGVQVDAIERGEDRLEFKKEMNKLGIEMAKSEI 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 N + + P V++P G ++ + + + + + Q LIE+ Sbjct: 149 ANTVEHALEIAEDLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVHQCLIEE 208 Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E ++ DA ++ + ++ S S +L I ++ ++ Sbjct: 209 SILGWEELEVEIVRDAKGNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AF +++G G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 267 QAFRIVESVGVIGGTNVQFAHDPVSDRIAVIEINPR---TSRSS-ALASKATGFPIA-LV 321 Query: 290 LWMV 293 M+ Sbjct: 322 SAML 325 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + Q + I T + A D + +P + ++ Sbjct: 641 LNLAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKR 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ ++S+ + + +LI+++++ Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDNESLEQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T + VP + S +S +LP IP+ + ++ + + RG Sbjct: 758 DAISDGTNVFVPAVMEHIELAGIHSGDSACILPSKHIPMRHLETIKEYTKKIAKEMNVRG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + KV+ LE N + T P ++ + ++ +V R Sbjct: 818 LMNMQYAI--ADDKVYVLEANPRASRT----VPLVSKVCNINMVKIATDIVTSELTGR 869 >gi|302853472|ref|XP_002958251.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f. nagariensis] gi|300256439|gb|EFJ40705.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f. nagariensis] Length = 1176 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L+ G++V ++ + + +LA +PD Sbjct: 108 SGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPMTPELAEQILAKERPDAILP 167 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + + IL I + + + + D+ KQ ++ G+ S Sbjct: 168 TMGGQTGLNLAKTLAERGILAKYGIELIGAKLPSIDRAEDRELFKQSMTRIGLKCAKSAT 227 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +++P G + + + + + Q+L+E Sbjct: 228 ATTLEEALTIAADIGKYPIIVRPAFTLGGTGGGIAYNIDELKEIVTGGLTASMTSQVLVE 287 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + ++ + Sbjct: 288 QSLLGWKEFELEVMRDLNDNCMIVCSIENVDPMGVHTGDSITVAPSQTLTDKELQRLRDA 347 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S +P ++ +E+N P ++ S + G+ ++ Sbjct: 348 AIAIIREMGVECGGSNVQMAVNPEDGEMVIIEMN--PRVSRSS--ALASKATGFPIAKMA 403 Query: 290 LWM 292 + Sbjct: 404 AKL 406 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 80/278 (28%), Gaps = 26/278 (9%) Query: 28 DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 F+ + V V+ +P+ G + L P + + Sbjct: 692 RLYFEPITV---EDVLNVIEAERPEGVIVQFGGQTPLKIAMDLDKALKANPIPAASGNGN 748 Query: 88 ALSM-------------DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134 D+ + P S + + P +I+P Sbjct: 749 VCVWGTSPESIDIAEDRDRWMELLTKLNIRQPAGGSARSEEEAFEKASKLGYPVMIRPSY 808 Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 + ++ ++ + + + + +LI++Y+D + V D + Sbjct: 809 VLGGRAMEILYSNEDLKRYVTFAVEVDPERPVLIDKYLD-RAVELDVDALCDKDGNVVIA 867 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 + +S ++ + IP + E++ +A+ G+ F Sbjct: 868 GIMEHIEQAGIHSGDSACSLPTQTIPPKVLDEIRSWTISVAKALNVVGLINIQFAV--QD 925 Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + +E N + T P +A G+ + LL Sbjct: 926 DVPYIIEANPRASRT----VPFVAKAVGHPIAKYASLL 959 >gi|33861382|ref|NP_892943.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633959|emb|CAE19284.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1099 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 95/315 (30%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL AG+++ ++ + + V ++ KPD Sbjct: 29 SGTQACKALRKAGYEIVLVNSNPASIMTDPEIANKTYIEPLTPEIVSQIILKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 + G + V+ I A +++K +++ + ++ Sbjct: 89 TMGGQTALNLAVKLSESDFLTNNNVELIGADLKAINKAEDRKLFKESMENINVNVCPSGI 148 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 S+ + S P +I+P +G + + + +Q+LIE Sbjct: 149 ASDLFEAREVSKQINSYPLIIRPAFTLGGVGGGIAYNLEEFNDLCKSGLDESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAVNPKNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 64/180 (35%), Gaps = 8/180 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P V++P + ++K + + ++ + +L++QY+ + Sbjct: 726 ANNIGFPLVVRPSYVLGGRAMEIVKDKNDLSRYIKEAVKVSPDHPILLDQYLSN-AIEID 784 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + + + +S ++ + + + + V++ L + Sbjct: 785 VDALCDKTGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSQETIETVKKWTKLIANRLNV 844 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G+ F S + +F LE N + T P ++ G +L +++ +S Sbjct: 845 VGLINLQFAIRNHSNEENQLFILEANPRASRT----IPFVSKAIGKPVAKLATQLMQGSS 900 >gi|226354884|ref|YP_002784624.1| carbamoyl phosphate synthase large subunit [Deinococcus deserti VCD115] gi|259585678|sp|C1CXR4|CARB_DEIDV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|226316874|gb|ACO44870.1| putative Carbamoyl-phosphate synthase large chain (Carbamoyl- phosphate synthetase ammonia chain) [Deinococcus deserti VCD115] Length = 1029 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V + D D V ++A KPD Sbjct: 29 SGTQALKALRGEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVEKIIALEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + ++ LE + +G+ A D+ + + GV Sbjct: 89 TLGGQTALNLAMELHERGTLEKYGVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ Q I P VI+P G + + + +L+E+ Sbjct: 149 VHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLRDSPVTSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + ++ + + Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRNQS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVATGGSNIQFAVNPDNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 >gi|182412502|ref|YP_001817568.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae PB90-1] gi|177839716|gb|ACB73968.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae PB90-1] Length = 1095 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + DV + ++A +P Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEVLEKIIATERPSALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + L + + A A D+ KQ + G+ V S Sbjct: 89 TLGGQTALNLSMDLHRTGVLARYGVEMIGAKPEAIAKGEDRELFKQAMLKIGLDVAKSRT 148 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + ++ L P +I+P G + + + + ++L+E Sbjct: 149 VRSMAEAREAAEELAMFPLIIRPSFTLGGSGGGIAYNKEEFERIVANGLDLSPVHEVLVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + +F + + + Sbjct: 209 ECLLGWKEFEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITVAPAMTLTDKEYQVMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F DP++ ++ +E+N P ++ S + G+ ++ Sbjct: 269 SFAVIREIGVETGGSNIQFSVDPVTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 87/293 (29%), Gaps = 29/293 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D D V + K D G Sbjct: 606 ALREAGYETVMVNSNPETVSTDYDTSDRLYFEPLTLEDVIEIYQQEKCDGVIVQFGGQTP 665 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A + P + L + H Sbjct: 666 LNLAAALKANGANIIGTSPESIEVAEDRKLFAAILNKIGLRQPANRTALSEAEALTFAHE 725 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ ++ + + Q+ G +LI+++++ Sbjct: 726 VGFPVLLRPSFVLGGRGMFIVYSEAEFKAVIRQAFDVMPGKPVLIDKFLEDAIELDVDCI 785 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + + +S + + P +P ++ + V++ + + G+ Sbjct: 786 SDGTTSVIGGM--LEHIEFAGVHSGDAAMVMPPHTLPAEMLERVRQATHALARELNVIGL 843 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 F ++ LE+N + T P +A G +L ++ A Sbjct: 844 MNVQFAI--KDGDLYVLEVNPRASRT----VPFVAKAIGVPLAKLAAKVMTGA 890 >gi|297539391|ref|YP_003675160.1| urea carboxylase [Methylotenera sp. 301] gi|297258738|gb|ADI30583.1| urea carboxylase [Methylotenera sp. 301] Length = 1215 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + I P ++K GG +G+ +I + + + Y++ Sbjct: 144 HLNAEKIGYPVMLKSTAGGGGIGMQLIWSADELNAAFESVQRLSRANFKSTGIYLEKYVQ 203 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236 + V ++ + P I ++ K + A Sbjct: 204 AARHIEVQIFGDGLGKVIALGERDCSVQRRNQKVIEETPAPHISDEVRKSLSDTAVKLGC 263 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+ R +F++D S + ++LE+N + G+T + G +L+ WM Sbjct: 264 ALNYRSAGTVEFVYDNDSGQFYFLEVNTRLQVEHGVTEL--------VTGV---DLVEWM 312 Query: 293 VEDAS 297 + A+ Sbjct: 313 IRIAA 317 >gi|296133333|ref|YP_003640580.1| carbamoyl-phosphate synthase, large subunit [Thermincola sp. JR] gi|296031911|gb|ADG82679.1| carbamoyl-phosphate synthase, large subunit [Thermincola potens JR] Length = 1074 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + V ++ KPD Sbjct: 30 GTQACRALKEEGLEVVLVNSNPATIMTDANIADRVYIEPLTADFVARIIKKEKPDGLLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + V + IL+ + + + + D+ + +++ +P + Sbjct: 90 LGGQVGLNIAVELAERGILQEEGVALLGTPLETIKKAEDREMFRNMMNEIKEPIPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + + Q LIE+ Sbjct: 150 DNVDDAVVFAERIGFPVIVRPAYTLGGTGGGIANNVEELKAITTRGLKMSMIKQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + I V + ++ + + Y+ ++ + Sbjct: 210 VAGW-KEIEYEVIRDSNDNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRAAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F +P S + +E+N P ++ S + G+ ++ Sbjct: 269 LKIIRALGIEGGCNVQFALNPNSFEYIVIEVN--PRVSRSS--ALASKATGFPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 92/290 (31%), Gaps = 32/290 (11%) Query: 26 LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64 L + G + I D D S L L P+ N++ G Sbjct: 588 LREEGIETIIINNNPETVSTDFDTSDRLYFEPLIPEDVLNIIEKEKPVGVVVQFGGQTAI 647 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + A DK P + + I Sbjct: 648 NLAEPLAQAGVNILGTAVKYIDMAEDRDKFDQLLQDLGIPKPPGRTATSVEGAQEIAEEI 707 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P + ++ + + + + + +L+++Y+ G E+ + D Sbjct: 708 GFPVLVRPSYVLGGRAMEIVYNQDELLEYMKSAVNVSPKHPVLVDKYLVGKEIEVDAISD 767 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 + P + S +S V PA+ + + ++V +A+ +G+ Sbjct: 768 GEDVLI----PGIMEHIERAGVHSGDSIAVYPARSLPENLVRDVVDYTTKLARALHVKGL 823 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ +++ LE+N + T P ++ G L M+ Sbjct: 824 INIQYVLHE--DRIYVLEVNPRSSRT----VPYISKITGVPMVNLATKMI 867 >gi|293607010|ref|ZP_06689354.1| carbamoyl-phosphate synthase, large subunit [Achromobacter piechaudii ATCC 43553] gi|292814607|gb|EFF73744.1| carbamoyl-phosphate synthase, large subunit [Achromobacter piechaudii ATCC 43553] Length = 1080 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 94/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHNGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAWEVQRRIAVEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + V+ D I + + + + Sbjct: 209 NELLIEESLLGWKEFEMVVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + G++ + D D S Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHATEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ + E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P ++ G L + A R Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|299066488|emb|CBJ37678.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Ralstonia solanacearum CMR15] Length = 1081 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSLEEALAVQAQIARETNTGGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALHEDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQRGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875 >gi|329769961|ref|ZP_08261359.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325] gi|328837565|gb|EGF87191.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325] Length = 1058 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V V+ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKVIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +L+ + + + + + D+ R+ + VP I Sbjct: 90 LGGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 TTVEEAYEFVREIGYPVIVRPAFTMGGTGGGICYNDKDLEEIVSSGLHYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPESFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 90/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ H P G Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTQEDVMAIINHENPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + +A DK P+ + + + Sbjct: 640 INLADKLEKYGVKILGTALEEIDNAEDRDKFEELLRKLDIPQPLGKTAFDVETAVQNAKE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + +L ++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEESELRRYMKTAVKLTPEHPVLTDRYLIGREIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + +++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEREKLIEYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282 ++ +VF LE+N P ++ ++ P AG Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858 >gi|308234824|ref|ZP_07665561.1| carbamoyl-phosphate synthase large chain [Gardnerella vaginalis ATCC 14018] Length = 582 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A KPD Sbjct: 29 SGTQACRVLHEEGIRVILVNSNPATIMTDPELADATYIEPIDTAILERIIAKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + IL+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMDLGRAGILKKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + + + ++ +++LIE+ Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNQEELHRIAGAGIHYSPTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + S D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDSKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPRTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|311114642|ref|YP_003985863.1| carbamoyl-phosphate synthase large subunit [Gardnerella vaginalis ATCC 14019] gi|310946136|gb|ADP38840.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis ATCC 14019] Length = 1131 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A KPD Sbjct: 29 SGTQACRVLHEEGIRVILVNSNPATIMTDPELADATYIEPIDTAILERIIAKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + + IL+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMDLGRAGILKKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P LG + + + ++ +++LIE+ Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNQEELHRIAGAGIHYSPTNEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + S D + P + + + + K Sbjct: 209 GIEGWKEFELELMRDSKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPRTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|226313358|ref|YP_002773252.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC 100599] gi|226096306|dbj|BAH44748.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC 100599] Length = 1070 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ I+ + V +L KP+ G Sbjct: 579 ALREAGYEAVIINNNPETVSTDFNTSDRLYFEPLYIEDVMNILDVEKPEGVIVQFGGQTA 638 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + +A + +K + P ++ + + Sbjct: 639 INLADKLTARGIKILGTSLENIDAAENREKFEALLRELEIAQPPGKTVTSVDQAVVAAEG 698 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + ++ N +L+++Y+ GIE + Sbjct: 699 LGFPVLVRPSYVLGGRAMEIVYNQPELLEYMEKAVKVNPDHPVLVDRYMVGIEAEVDAIC 758 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + I E+ + +A+ +G+ Sbjct: 759 DGENVLIPGIMEHIERAG---VHSGDSIAVYPPQSLSQAIKDELIDMTTKLARALQIKGL 815 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ + + +E+N + T P ++ G + + Sbjct: 816 LNIQFVI--YKDRPYVIEVNPRSSRT----VPFLSKVTGIPMANIATKAI 859 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V I+ + V V+ KPD Sbjct: 30 GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFVARVIRQEKPDGLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V E +++ T + A D RS VP + Sbjct: 90 LGGQTGLNMAVALSEAGVLEQENVKLLGTKLESIKQAEDRDLFRSLMNELGEPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + ++++ + ++ Q LIE+ Sbjct: 150 STIEEAVDFANEIGYPIIVRPAYTLGGTGGGICDDEETLREIVASGLKYSPITQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ A Sbjct: 210 IAG-MKEIEYEVMRDANDNCIVVCNMENIDPVGVHTGDSIVVAPSQTLADREYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G + DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LNIIRALGIEGGCNVQYALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|103486474|ref|YP_616035.1| carbamoyl phosphate synthase large subunit [Sphingopyxis alaskensis RB2256] gi|98976551|gb|ABF52702.1| carbamoyl-phosphate synthase large subunit [Sphingopyxis alaskensis RB2256] Length = 1106 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + D D V ++A +PD Sbjct: 29 SGTQAIKALKEEGYRIVLVNSNPATIMTDPDLADATYVEPITPEIVAKIIAKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L + + A + D+ + ++ + G+ S + Sbjct: 89 TMGGQTALNTALALFNDGTLAKYGVEMIGAKAEAIDKAEDRQKFREAMDRIGLESARSGI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + + ++LIE+ Sbjct: 149 AHTLEEAFAVLERTGLPSIIRPSFTLGGTGGGIAYNREEFEQIVRGGLIASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDAKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 105/317 (33%), Gaps = 51/317 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ ALE+AG++ I D D S Sbjct: 594 IVILGGGPN-------RIGQGIEFDYCCCHACFALEEAGYETIMINCNPETVSTDYDTSD 646 Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL----------------LEIPYTHSGILA 86 L L + +LH + LV I++ + I T + Sbjct: 647 RLYFEPLTAEDVLEILHVEMSKGELVGVIVQFGGQTPLKLAQALSDAGIPILGTSPDAID 706 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + I P + +P + ++ Sbjct: 707 LAEDRERFAALVNKLGLKQPENGIARSREEAIAVAARIGYPVLTRPSYVLGGRAMEIVDD 766 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + +LI++Y D IE+ + D + V + + Sbjct: 767 QAQLENYIETAVQVSGTSPVLIDRYLRDAIEVDVDALCDGTDVVVAGVLQHIEEAG---V 823 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P +P DI E++R +A+G RG+ + +V+ +E+N + Sbjct: 824 HSGDSACSIPPYSLPADIIAEIERQTDALARALGVRGLMNVQYAV--KDGEVYLIEVNPR 881 Query: 266 PGMTPVSIFPEMAAYAG 282 T P +A G Sbjct: 882 ASRT----VPFVAKAVG 894 >gi|225163608|ref|ZP_03725915.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium TAV2] gi|224801776|gb|EEG20065.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium TAV2] Length = 1133 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + + ++ KP Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEMLEKIIETEKPSALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +Q L+ + + A A D+ KQ + G+ V S Sbjct: 89 TLGGQTALNLSMQLHEKGILQKHGVEMIGAKPAAIAKGEDRELFKQAMLKIGLDVARSRT 148 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ ++ + + P +I+P G + + + + ++L+E Sbjct: 149 VKSMDAARAAAEEIGNYPLIIRPSFTLGGSGGGIAYNKEEFEQIVANGLDLSPVHEVLVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + +F + + + Sbjct: 209 ECLLGWKEYEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITVAPAMTLTDKEYQVMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 SFAVIREIGVETGGSNIQFSIDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 29/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + + D A G Sbjct: 644 ALREIGYESVMVNSNPETVSTDYDTSDRLYFEPLTLEDVLEIYQQEQCDGAIVQFGGQTP 703 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A + + P + + + Sbjct: 704 LNLASALKANGVNIIGTSPESIEIAEDRKLFAAILHKLNLQQPANRTAMNETEALVFAKE 763 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ ++ + + Q+ +LI+++++ Sbjct: 764 VGFPVLLRPSFVLGGRGMFIVYNEDEFKAVIRQAFEVMPDKPVLIDKFLEDAIELDVDCI 823 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + + +S S + P + + + V++ + + G+ Sbjct: 824 SDGTTSVIGGM--LEHIEFAGVHSGDASMVMPPHTLGRAMLETVRKATHALARELNVIGL 881 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F +++ LE+N + T P +A G +L + Sbjct: 882 MNIQFAI--KDNELYVLEVNPRASRT----VPFVAKAIGVPLAKLAAKI 924 >gi|198282925|ref|YP_002219246.1| carbamoyl-phosphate synthase large subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666972|ref|YP_002425128.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247446|gb|ACH83039.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519185|gb|ACK79771.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1079 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + +V ++A +PD Sbjct: 29 SGVQACKALREEGCRVILVNSNPATIMTDAQTADATYIEPVEWQTVARIIAMERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G D + +LE + + + A + D+ + V Sbjct: 89 TMGGQTALNCALDLHREGVLEQYGVKLIGASVEAIREAEDRGLFKKAMEEIGLEVARSAF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + + + ++LIE+ Sbjct: 149 GHDMEGARQIAEDIGFPVIIRPSFTLGGTGGGIAYNREEFEDIAARGLEASPTHEILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEFEMEVVRDRADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDREYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRRIGVDTGGSNVQFAVNPEDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 28/288 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ GF+ + D D V ++A KP G Sbjct: 586 ALQEDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPHGVIVQFGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + Sbjct: 646 LKLANDLEAAGVPIIGTTPDSIDLAEDRERFQQLLQRLDLRQPENAIARSAPEALSKARA 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + ++ + + +L++ ++ +L++++++ L V Sbjct: 706 LGYPLVVRPSYVLGGRAMRIVYGEDDLQRYMLEAVRISNDQPILLDRFLN-DALEVDVDA 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A I + +S ++ + P + I E++R A+G G+ Sbjct: 765 VADSGQQVIVAGIMEHIEQAGVHSGDSACCLPPYSLSPAIQDEIRRQTVELALALGVVGL 824 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F + +++ LE+N + T P ++ G+ ++ Sbjct: 825 MNCQFAV--QNERIYVLEVNPRASRT----VPFVSKATGWPLAKIASR 866 >gi|152990294|ref|YP_001356016.1| carbamoyl phosphate synthase large subunit [Nitratiruptor sp. SB155-2] gi|151422155|dbj|BAF69659.1| carbamoylphosphate synthase, large subunit [Nitratiruptor sp. SB155-2] Length = 1084 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 86/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSVG-LVLAHLKPDLAFN 56 SG L+ G++V I+ + V ++ K D Sbjct: 29 SGTQAVKTLKSLGYRVVLINSNPATIMTDPGFADRTYIEPITEDVVYKIIQQEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L+ +E + + + +P Sbjct: 89 TMGGQTALNVAMSMYEKGMLDGVEFLGAKPQAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M++ I P +I+ + G V + + + +++LIE+ + Sbjct: 149 SMEEAMEAAAQIGFPLIIRASYTLAGGGSGVAYNIDEFKVLAAKGLEASPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDKEDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAVNPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 90/264 (34%), Gaps = 12/264 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID+ V V+ P G +I T + ++ A + Sbjct: 615 FEPIDL-EHVRQVIKEENPSGVIVHFGGQTPLKLAKPLTALGAKIVGTSAKVIDLAEDRE 673 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K + + P + + I P +++P + ++ + + Sbjct: 674 KFSTFVAKNGLKQPPNGTAFTKEDALKIADEIGYPVLVRPSYVLGGRAMRIVYNENELKE 733 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ S +H +LI++++D + DA D T + + + E S +S Sbjct: 734 YMDEAVSVSHESPVLIDKFLD---HAIELDVDAISDGTNVYIGGIMQHIEEAGIHSGDSA 790 Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 LP + I EV+ +G +G+ + +V+ +E+N + T Sbjct: 791 CSLPTVSIDEAILHEVENQTKKIALGLGVKGLLNIQYAI--YKDEVYLIEVNPRASRT-- 846 Query: 272 SIFPEMAAYAGYSFRELLLW-MVE 294 P ++ G ++ M++ Sbjct: 847 --VPFVSKATGVPMAKVATRVMIK 868 >gi|148553362|ref|YP_001260944.1| carbamoyl phosphate synthase large subunit [Sphingomonas wittichii RW1] gi|148498552|gb|ABQ66806.1| carbamoyl-phosphate synthase large subunit [Sphingomonas wittichii RW1] Length = 1110 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+++ ++ + + V ++ +PD Sbjct: 29 SGTQACKALREEGYRIVLVNSNPATIMTDPEMADATYVEPITPEIVARIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + LE + A + D+++ +Q + G+ S Sbjct: 89 TMGGQTALNTALALFNDGTLEKYGCQMIGADAEAIDKAEDRLKFRQAMDKIGLESPRSDV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + + + ++LIE+ Sbjct: 149 AHTLDEALRVLDYVGLPAIIRPSFTMGGTGGGIAYNKDEFVKIVTGGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 99/326 (30%), Gaps = 51/326 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ AL DAG++ + D D S Sbjct: 593 IVILGGGPN-------RIGQGIEFDYCCCHACFALADAGYETIMVNCNPETVSTDYDTSD 645 Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 L L + +LH + L I++ + + + Sbjct: 646 RLYFEPLTAEDVLEILHVEQSKGTLKGVIVQFGGQTPLKLAQELEDAGIPILGTSPDAID 705 Query: 103 CGVPVCPSI----------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + + P +++P + +++ Sbjct: 706 LAEDRERFAALVGELGLSQPRNGIARSREEALAVAERVGYPVLMRPSYVLGGRAMEIVED 765 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + +LI+QY D IE+ + D V + + Sbjct: 766 PSQLDQYISTAVQVSGDSPVLIDQYLRDAIEVDVDAICDGDDVVVAGVLQHIEEAG---V 822 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P +P +I E++R +A+ RG+ + +V+ +E+N + Sbjct: 823 HSGDSACTLPPYSLPKEIIAEIERQTDALARALKVRGLMNVQYAV--KDGEVYLIEVNPR 880 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P +A G ++ Sbjct: 881 ASRT----VPFVAKAIGQPIAKIAAR 902 >gi|17546240|ref|NP_519642.1| carbamoyl phosphate synthase large subunit [Ralstonia solanacearum GMI1000] gi|22095509|sp|Q8XZ83|CARB_RALSO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|17428537|emb|CAD15223.1| probable carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) protein [Ralstonia solanacearum GMI1000] Length = 1081 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K+ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSLEEALAVQAQIARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875 >gi|113476462|ref|YP_722523.1| carbamoyl phosphate synthase large subunit [Trichodesmium erythraeum IMS101] gi|110167510|gb|ABG52050.1| carbamoyl-phosphate synthase large subunit [Trichodesmium erythraeum IMS101] Length = 1076 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + GF+V ++ + + + V+A +PD Sbjct: 29 SGTQACKALREEGFEVVLVNSNPATIMTDPEIAECTYIEPLTPELIEKVIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + L + + + A ++ D+ K+ + G+ VCPS Sbjct: 89 TMGGQTALNIAVSLAKNGTLAKYGVDLIGAKLPAIEMAEDRQLFKEAMGRIGIQVCPSGI 148 Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 +Q + + P +I+P G + + + + Q+L+E Sbjct: 149 ASNWEEAKAIAQKIGTYPLIIRPAFTLGGTGGGIAYNQEEYEVMAQGGIDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSVTVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F PL+ V +E+N P ++ S + G+ ++ Sbjct: 269 SIKIIREIGVETGGSNIQFAVHPLNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 40.2 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H I P V++P + ++ DQ + + + +LI+++++ + Sbjct: 709 AHTIGYPVVVRPSYVLGGRAMEIVYSDQELERYMKFAVQVEPEHPILIDKFLNN-AVEVD 767 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V A + + +S ++ + + + +++ +A+ Sbjct: 768 VDAIADSTGRVVIGGIMEHIEEAGIHSGDSACSIPYQTLTSAAVETIRQWTVALAKALNV 827 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F V+ LE N + T P ++ G ++ Sbjct: 828 IGLMNIQFAV--QGETVYILEANPRASRT----VPFVSKAIGIPLAKIASR 872 >gi|297845912|ref|XP_002890837.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp. lyrata] gi|297336679|gb|EFH67096.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp. lyrata] Length = 1183 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V V+ +PD Sbjct: 116 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 175 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V LE + + + A + D+ K+ + + G+ PS + Sbjct: 176 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKEAMKNIGLKTPPSGI 235 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + + P +I+P G + + + + Q+L+E Sbjct: 236 GNTLDECFDIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKAGLAASVTSQVLVE 295 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 296 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDY 355 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+ +V +E+N P ++ S + G+ ++ Sbjct: 356 SIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 411 Query: 290 LWM 292 + Sbjct: 412 AKL 414 >gi|228992621|ref|ZP_04152547.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides DSM 12442] gi|228766953|gb|EEM15590.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides DSM 12442] Length = 1018 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93 V ++ +PD L G G + V+ +EI T + A D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 R+ + P I + I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|228998667|ref|ZP_04158254.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides Rock3-17] gi|228761135|gb|EEM10094.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides Rock3-17] Length = 1018 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93 V ++ +PD L G G + V+ +EI T + A D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 94 MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 R+ + P I + I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|229006169|ref|ZP_04163855.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides Rock1-4] gi|228755010|gb|EEM04369.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides Rock1-4] Length = 1018 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 89/259 (34%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS +++ + I P +++P G + ++ + Sbjct: 78 FRTLMQELNEPTPPSEIIHTLDGAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|187779560|ref|ZP_02996033.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC 15579] gi|187773185|gb|EDU36987.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC 15579] Length = 1068 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KP+ G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVCDKLYFEPITEEDVLNIVEKEKPNGIILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMKITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + D + P + + S +S + P + DI +++ IG Sbjct: 760 AISDGEDVLI----PGIMEHLERAEVHSGDSITMYPTQNVSKDIKEKILEYTKRLALGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V I+ + V V+A +PD Sbjct: 29 SGTQACEGLKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTAEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ L+ + + I + D+ + V+S PV S Sbjct: 89 GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTDMENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILTLGLQLSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G I V + ++ + + Y+ ++ Sbjct: 209 SVKGW-KEIEYEVMRDNRGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SINIINSVGIEGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|182416339|ref|YP_001821405.1| carbamoyl phosphate synthase large subunit [Opitutus terrae PB90-1] gi|177843553|gb|ACB77805.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae PB90-1] Length = 1067 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV S+ ++A +PD Sbjct: 29 SGTQACKALRALGYQIVLVNSNPATIMTDPGTADVTYIEPLTVPSLTEIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + Q +L + A D++ K+ + G+ + S Sbjct: 89 NLGGQTGLNLSSQLAKAGVLARFGVRIIGVEADAIEKGEDRIIFKETMKRLGIDMPRSAP 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+P G + + + + + + + +Q+L+E+ Sbjct: 149 AFSVEEAEKVATELGYPVVIRPAYTLGGTGGGHVYNVEELRVVASRGLAASMVNQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + + I + +Q Sbjct: 209 SVLGWEELELEVVRDAKNHLITVCFIENVDAMGVHTGDSYCVAPM-LTIEPKLQARLQEY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A+ ++IG G + F DP + ++ +EIN + T S + G+ Sbjct: 268 AYRIVESIGVIGGTNVQFAHDPETDRIVVIEINPR---TSRSS-ALASKATGFPIA 319 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 43/296 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A AL DAG++ + D D Sbjct: 554 VMVLGGGPN-------RIGQGIEFDYCCVHAAWALRDAGYETIMVNCNPETVSTDYDTSD 606 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V + A KP+ G + + +++ T + A Sbjct: 607 KLYFEPLTIEDVLSIYAKEKPEGVVVQFGGQTPLNIAKELEAAGVKVLGTSPDTIDLAED 666 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D+ R +P I P +++P + V+ + + Sbjct: 667 RDRFRQMMEKMGIPMPESGMASTFEEARAVAARIGYPVMVRPSFVLGGRAMEVVHDEAML 726 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 L ++ + +LI+++++ DA D T+ VP + S + Sbjct: 727 KDYLARAIDVSPERPILIDRFLEN---ATEAEADALADGTDAFVPAVMEHIEFAGIHSGD 783 Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +P + ++ + + G+ + KV+ LE N + Sbjct: 784 SACAIPPVSLPKKHLATIEAYTLRIGRELKVAGVMNIQYAICQ--DKVYVLEANPR 837 >gi|162149109|ref|YP_001603570.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545147|ref|YP_002277376.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161787686|emb|CAP57282.1| putative carbamoyl-phosphate synthase large chain [Gluconacetobacter diazotrophicus PAl 5] gi|209532824|gb|ACI52761.1| carbamoyl-phosphate synthase, large subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1084 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEFVERIILREKPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + + D+ + ++ + + G+ S++ Sbjct: 89 TMGGQTALNTAMALDKSGFLKEHGVELIGADAEVIDRAEDRQKFREAMDAIGIESPRSVI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P VI+P G + + + + ++LIE+ Sbjct: 149 AHTLDEARAALEQVGLPAVIRPSFTMGGSGGGIAYNREEFDQIVASGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDSADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LACLRAIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 44/327 (13%), Positives = 88/327 (26%), Gaps = 55/327 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL +AGF+ + D D S Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + ++ G + + T + + Sbjct: 616 RLYFEPLTEEDVIALIRREQASGTVLGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P D I P VI+P + ++ Sbjct: 676 RAEDRERFQAMLHKLGLRQPDNGIARTAAEAEDVAERIGYPVVIRPSYVLGGRAMEIVHD 735 Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 S+ + + D D IE + D + + Sbjct: 736 RASLQRYMRVALQLAGHDIASGPVLIDRYLNDAIEADVDCISDGHTVYVAGVMEHIEEAG 795 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 ++ + P + I E++ + +G G+ + +F LE Sbjct: 796 IHSG---DSACSLPPYTLSPAIVTELKEQTEAMARELGIVGLMNVQYAIKDQD--IFVLE 850 Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288 +N + T P +A G ++ Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873 >gi|297566674|ref|YP_003685646.1| carbamoyl-phosphate synthase large subunit [Meiothermus silvanus DSM 9946] gi|296851123|gb|ADH64138.1| carbamoyl-phosphate synthase, large subunit [Meiothermus silvanus DSM 9946] Length = 1030 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 36/298 (12%), Positives = 88/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL AG++V ++ + + ++A +PD Sbjct: 29 SGTQAVKALRSAGYEVVLVNSNPATIMTDPELAEATYLEPLTPEYLEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + +++ ++ + ++ + VP Sbjct: 89 TLGGQTALNLSMTLHETGVLEKYNVQLIGANAAAIKKGEDREEFQRAMQKIGLEVPRGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G + ++ L + S + L+E+ Sbjct: 149 VSSLEEGLTFARSIGYPMVVRPSFTLGGTGGGIAGDEKEFIEILTRGLSLSPTHTALVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + ++ + Sbjct: 209 SILGWKEFELEVMRDRGDTVVIITSIENVDPMGVHTGDSITVAPAQTLTDVEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 QAIIREIGVDTGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 41.0 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 82/289 (28%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D D V ++ H KP L G Sbjct: 587 ALREAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPIGVIATLGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A + + P+ Sbjct: 647 LKLAKPLAQAGVTLLGTSWEAIHRAEERSEFNRLCQELAIPQPLGRVAQSPEEAQRLAEG 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V++ + L + + ++ L V Sbjct: 707 IGYPLMVRPSYVLGGRAMQVVRDAAELRKYLAEIYAELSEKPSILLDQYLENALELDVDA 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + +A +S ++T + P + + + V+ A+G RG+ Sbjct: 767 ICDGERVVVAGIMEH-VERAGVHSGDSATILPPISLTPEQLETVKAYTRKLALAVGVRGL 825 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 + V+ LE N + T P ++ G+ + L+ Sbjct: 826 LNVQYAV--KDGTVYILEANPRASRT----VPFVSKAIGHPLAKYAALI 868 >gi|306833760|ref|ZP_07466886.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis ATCC 700338] gi|304424097|gb|EFM27237.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis ATCC 700338] Length = 1059 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVAILGTQVSDLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++++ + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEENLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|325915492|ref|ZP_08177805.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538293|gb|EGD09976.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria ATCC 35937] Length = 1080 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D D ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGLMEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + VF LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDVVFLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|315303746|ref|ZP_07874253.1| carbamoyl-phosphate synthase, large subunit [Listeria ivanovii FSL F6-596] gi|313627888|gb|EFR96514.1| carbamoyl-phosphate synthase, large subunit [Listeria ivanovii FSL F6-596] Length = 1044 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 87/301 (28%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 10 GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 69 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + A + R VP I Sbjct: 70 LGGQTGLNMAMELSEAGILAECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 129 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + ++ + + + Q L+E+ Sbjct: 130 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 189 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + V + ++ + + Y+ ++ ++ Sbjct: 190 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 248 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 249 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 304 Query: 292 M 292 + Sbjct: 305 I 305 Score = 42.6 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 560 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 619 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T A + D + P + + Sbjct: 620 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 679 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++++ + + N +L+++YV G E+ + Sbjct: 680 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 739 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + + + G Sbjct: 740 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNTIVDYTTRLATGLNIIG 795 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + ++ D +VF +E+N P ++ ++ P Sbjct: 796 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 833 >gi|294786970|ref|ZP_06752224.1| carbamoyl-phosphate synthase, large subunit [Parascardovia denticolens F0305] gi|315226609|ref|ZP_07868397.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105] gi|294485803|gb|EFG33437.1| carbamoyl-phosphate synthase, large subunit [Parascardovia denticolens F0305] gi|315120741|gb|EFT83873.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105] Length = 1076 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 42/320 (13%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L + G++V I+ DRS+ V+ +PD Sbjct: 29 SGSQACQSLREEGYEVVLINSNPATIMTDRSIADKVYIEPLTVEFAKRVIYKERPDAILG 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + +V+ L+ + + + A + D+ RS VP Sbjct: 89 TLGGQTGLNMVVELHNDGVLDEYGVEILGTTLEAINKAEDRELFRSLMNELGEPVPESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G ++ + + Q LIE+ Sbjct: 149 VHTVEDAVRFAGELGYPVVVRPAYTLGGTGGGFAHNERELRHIADAGLKMSPVHQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + + + + + + ++ Sbjct: 209 SIAGFKEIEYEVMRDAHDNAIVVCNMENVDPVGIHTGDSVVVAPIQTLTDRE-NQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA- 279 + +A+ G +P S + +E+N P ++ S +P A Sbjct: 268 SLRIIRALKICGGCNVQLALNPQSFNYYVIEVN--PRVSRSSALASKATGYPIAKISAKL 325 Query: 280 YAGYSFRELLLWMVEDA-SC 298 G S E+L + + + +C Sbjct: 326 AVGLSLDEILNPITQTSYAC 345 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 88/284 (30%), Gaps = 33/284 (11%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C L G++ I+ V V+A +P G Sbjct: 581 CVETLRAEGYEAIVINNNPETVSTDFSISDRLYFEPLTTEDVMQVIALERPLGVVVQFGG 640 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + + P + + + Sbjct: 641 QTAINIAASLATHGVKILGTSLQAIDRAEDRHEFEAALQSLEIPQPEGATAVTVDEALVI 700 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179 + I P +++P + ++ + + + +H +L+++YV G EL Sbjct: 701 ANRIGYPVLVRPSYVLGGRAMEIVHNGDELKVYMATAVKEISHDAPILVDRYVLGKELEI 760 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + D P + S +S V P++I D + + + A Sbjct: 761 DAICDGENVFI----PGLMEHIERAGIHSGDSISVYPSQIVSDQVKQTIVDYALRIGTGF 816 Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 G G+ F+ D +V+ LE+N P ++ ++ P Sbjct: 817 GFVGLYNIQFIVDKQ-NRVYVLEVNPRSSRTVPFLSKITGVPMS 859 >gi|268608817|ref|ZP_06142544.1| carbamoyl phosphate synthase large subunit [Ruminococcus flavefaciens FD-1] Length = 1063 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 32/289 (11%) Query: 26 LEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ G++ D V ++ +P G Sbjct: 579 LKELGYEAVICNNNPETVSTDFDTGDRLYFDPLTKEDVQSIIETEQPYGVVVQFGGQTAI 638 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + ++ +A ++ P +++ + + + Sbjct: 639 KLTRYLSDMGVRILGTSADMIDAAEDRERFDEVLEKCGIPRPAGHTVMNTEEAIAAAEDL 698 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P +I+ + + S N + +LI++Y+ G E+ + D Sbjct: 699 GYPVLLRPSYVLGGQNMIIAHSRADVVEYMGIIMSHNIENPVLIDKYMMGTEVEVDAICD 758 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 + P + S +S + PA+ + I + + + + G+ Sbjct: 759 GEDFLI----PGIMEHIERAGVHSGDSISIYPAQHLSERIKRIIVEYTRKLAKELNVIGL 814 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 ++ + +VF +E+N + T P ++ G ++ + Sbjct: 815 VNIQYVV--YNHEVFVIEVNTRSSRT----VPYISKVTGIPMVDIATKI 857 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL+ G +V ++ + + + ++ KPD + Sbjct: 30 GTQACRALKQEGLEVVLVNSNPATIMTDKAMADKVYIEPLTLDVIKRIIEIEKPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G +Q L+ + + L + D+ + V + Sbjct: 90 LGGQTGLTLSMQLAEEGFLDSHNVKLLGADPLTIHKAEDRQAFKDTMEKIGEPVIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D +I P +++P G + + ++ + + Q+L+E+ Sbjct: 150 ENVEDAVDFAQVIHYPVIVRPAFTLGGTGGGIAQNEEELRDIATNGLRLSPITQILVEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + +F + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVIRDAKGNVITVCSMENFDPVGVHTGDSIVIAPAVTLSDRE-YQMLRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G F P S + +E+N P ++ S + GY + Sbjct: 269 INIIKELKVEGGCNCQFALHPTSFQYAVIEVN--PRVSRSS--ALASKATGYPIAKTAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|206891197|ref|YP_002249059.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743135|gb|ACI22192.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1105 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 101/302 (33%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + + L++ +PD Sbjct: 29 SGAQACKALKQEGYQVVLVNSNPATIMTDPSMADSTYIEPLTAEILELIIKKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + VQ IL+ + + + A + D+ KQ ++ G+ V S Sbjct: 89 TLGGQTALNLAVQLGEAGILDRYSVELIGANLHAIKKAEDRELFKQAMTKIGLEVPRSAA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +++ I P +++P G V + L + + Q+LIE+ Sbjct: 149 VHSLKEGLEAIDYIGFPAILRPAFTLGGTGGGVAYNIEEFKELLERGLKLSPVSQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLLGWKEFELEVMRDKSDNVVIVCSIENFDPMGVHTGDSITVAPVQTLTDREYQIMRDNA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKAIREIGVDTGGSNIQFAVNPKNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L + G++ I D D V ++ KP G Sbjct: 618 LRELGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLHIVEREKPLGVILQFGGQTPL 677 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + + A + + + P + + + Sbjct: 678 KLAKALESHGVNILGTSADAIDRAEDRKRFKELVDKLNLKQPPSETATSLEEALKIADTL 737 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183 P +++P + ++ ++S+ + ++ + +LI++Y D IE+ + Sbjct: 738 GYPILVRPSYVLGGRAMEIVYDEESLRRYMREAVKASEDHPVLIDRYLEDAIEVDVDAIS 797 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + V + + ++ + P + +I ++++ + + +G+ Sbjct: 798 DGADVVVAGIMQHIEEAGIHSG---DSACSLPPYSLSQEIIQKIKEETISIAKELKVKGL 854 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +++ LE+N + T P ++ G ++ + Sbjct: 855 MNVQYAV--KDSEIYVLEVNPRASRT----IPYVSKSIGVPLAQMASKI 897 >gi|319790533|ref|YP_004152166.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio ammonificans HB-1] gi|317115035|gb|ADU97525.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio ammonificans HB-1] Length = 1073 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D + ++ +PD Sbjct: 29 SGTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ILE + + + A + D+ K+ + G+ V S Sbjct: 89 TVGGQTALNLAVKLHEAGILEKYGVELIGAKVEAIKKAEDRELFKEAMLKIGLEVPKSGT 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +I+P G V + + + + ++LIE+ Sbjct: 149 AHTLEEALEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKKGLAASPVSEILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQVLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREIGVETGGSNVQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71 AL + G++ + D D S L L + A NV+ +VQ Sbjct: 584 ALRELGYEAHMVNCNPETVSTDYDTSDKLFFEPLTLEDALNVVEKEKPLGVVVQFGGQTP 643 Query: 72 ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123 LE + + + ++ D+ R +++++ G+ PS + Sbjct: 644 LKLSVPLEREGVKILGTSSESIDIAEDRERFRELLNRLGLKQPPSGIARSLEEAEKIAQE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ + +LI+++++ Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYSMEELRQYMAEAVEVSEEKPVLIDKFLED---AVEFDV 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242 DA D E+ + + E S +S VLP + DI ++++ + + +G Sbjct: 761 DAVADGEEVVIGGVMEHIEEAGIHSGDSACVLPTFSVSRDIVEKIKEITRKIALELNVKG 820 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F +++ +E+N + T P ++ G ++ Sbjct: 821 LINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKVATK 863 >gi|210624199|ref|ZP_03294254.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275] gi|210153186|gb|EEA84192.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275] Length = 1069 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 91/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L G + I D D V ++ PD G Sbjct: 580 CVKSLRKQGIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKENPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKHIPILGTDFEDIDAAEDREKFDELLERLDINRPKGRGVWTVEEGLEV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + P +++P G+ + + + L + + + +LI++Y+ G E+ Sbjct: 700 AHNLGFPVLVRPSYVLGGQGMEITYDEARLVQYLEAAFERDSKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + D + P + S +S + P++ D I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSITMYPSQNISDRIKEKILDYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VIGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTLEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V Sbjct: 89 GMGGQTGLNLAVELYESGILDKYGVKVIGTSVESIKKGEDRDIFREVMREINQPVIESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P V++P G + + ++ + L+ + Q+L+E+ Sbjct: 149 VTTLEDGLAYANKIGYPLVVRPAYTLGGTGGGIAENEEELKEILVHGLQLSPVSQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S+ + + + + + +++ Sbjct: 209 SIKGWKEIEYEVMRDSIGNSIVICNMENVDPVGVHTGDSIVVAPT-QTLSAKECAMLKKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDILNAVEVQGGCNVQFALNPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|73541863|ref|YP_296383.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha JMP134] gi|72119276|gb|AAZ61539.1| carbamoyl-phosphate synthase large subunit [Ralstonia eutropha JMP134] Length = 1082 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++ +PD Sbjct: 29 SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ ++ + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSMEEALAVQTRIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 93/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++A KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAIEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVG 828 Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 829 LMNVQFAIQQNNGVDTVYVLEVNPRASRT----VPYVSKATGLQLAKIAAR 875 >gi|328676104|gb|AEB26974.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida Fx1] Length = 1094 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|187930920|ref|YP_001890904.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711829|gb|ACD30126.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 1094 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.5 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALTDGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|254375167|ref|ZP_04990647.1| carbamoyl-phosphate synthase large chain [Francisella novicida GA99-3548] gi|151572885|gb|EDN38539.1| carbamoyl-phosphate synthase large chain [Francisella novicida GA99-3548] Length = 1094 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|254372021|ref|ZP_04987514.1| carbamoyl-phosphate synthase [Francisella tularensis subsp. novicida GA99-3549] gi|151569752|gb|EDN35406.1| carbamoyl-phosphate synthase [Francisella novicida GA99-3549] Length = 1094 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|115314001|ref|YP_762724.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. holarctica OSU18] gi|115128900|gb|ABI82087.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 1095 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 98/326 (30%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ ++ + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|89255476|ref|YP_512837.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. holarctica LVS] gi|156501405|ref|YP_001427470.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009320|ref|ZP_02274251.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. holarctica FSC200] gi|254368455|ref|ZP_04984472.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. holarctica FSC022] gi|290954319|ref|ZP_06558940.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312265|ref|ZP_06803060.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. holarctica URFT1] gi|89143307|emb|CAJ78470.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. holarctica LVS] gi|156252008|gb|ABU60514.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121349|gb|EDO65550.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. holarctica FSC022] Length = 1094 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 98/326 (30%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ ++ + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|328946394|gb|EGG40535.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1087] Length = 1059 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAADIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|326406894|gb|ADZ63965.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis subsp. lactis CV56] Length = 1064 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + I+ + V ++ +P+ G Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L A D P + + + Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +I+P + +I ++ + + ++ + +L++ Y+ G E Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + P ++ + + C Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEVIDTIVDYTKRLAIGLNC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ +L M+ Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114 L G G + ++ I L E+ G SA+ + R + Sbjct: 90 LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149 Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q LIE+ Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|302878017|ref|YP_003846581.1| urea carboxylase [Gallionella capsiferriformans ES-2] gi|302580806|gb|ADL54817.1| urea carboxylase [Gallionella capsiferriformans ES-2] Length = 1208 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P +IK GG +G+ + + + Y++ Sbjct: 142 HAHAEAARIGYPVMIKSTAGGGGIGMRLCWSSDELNEAFQSVERLARANFKDAGIYLEKY 201 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234 + V ++ + PA ++ + + A Sbjct: 202 VEHARHIEVQLFGDGRGCVIDLGERDCSVQRRNQKVIEETPAPNLTPEVRQHLLATAVRL 261 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290 A+ + +F+FD + + ++LE+N + G+T G +L+ Sbjct: 262 GVAVQYQSAGTVEFVFDANNGEFYFLEVNTRLQVEHGVTE--------QVTGV---DLVE 310 Query: 291 WMVEDAS 297 WMV A+ Sbjct: 311 WMVLQAA 317 >gi|223934510|ref|ZP_03626431.1| urea carboxylase [bacterium Ellin514] gi|223896973|gb|EEF63413.1| urea carboxylase [bacterium Ellin514] Length = 1201 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 16/224 (7%) Query: 81 HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140 S + L + +P + + I P ++K GG +G Sbjct: 105 PSQMEDFGLKHRARELAGECNVPLLPGTQLLSSVDEAVQRASGIGYPVMLKSTAGGGGIG 164 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200 + V + + + + + +++ + + V Sbjct: 165 MRVCNNEADLREHFDSVTRLSQTNFKNGGLFLEKFVRHARHIEVQIFGDGQGRVLALGER 224 Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259 L+ + PA P ++ +++ A + + R +F++D + ++ Sbjct: 225 DCSLQRRNQKVVEETPAPNLPPEVREQLFACARRLGERVKYRSAGTVEFVYDAEAGAFYF 284 Query: 260 LEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 LE+N + G+T G +L+ WMV A+ Sbjct: 285 LEVNTRLQVEHGVTE--------EVLGI---DLVEWMVRLAAGD 317 >gi|295702822|ref|YP_003595897.1| carbamoyl-phosphate synthase large subunit [Bacillus megaterium DSM 319] gi|294800481|gb|ADF37547.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium DSM 319] Length = 1036 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G++V I+ + + V ++A KPD Sbjct: 29 SGTQACLSLKEEGYEVILINNNPATIMTDTHVADRIYFEPLTVDCVEKIIAKEKPDGLLA 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ + + ++ T + S ++ R+ + VP Sbjct: 89 TLGGQTGLNLALELHEQNILPKYDVKLLGTPIESIKKGESREEFRALMNELNEPVPESEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + Q LIE+ Sbjct: 149 VTKVEEALAFAKKIGFPVIVRPAYTLGGTGGGIAHSMEELEKLSASGLRESAITQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G ++ T I + + ++ + + Y+ ++ Sbjct: 209 SIAG-FKEVEYEVMRDVNNTCITICNMENIDPVGVHTGDSVVVAPSQTLTDVEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++G G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SVKIISSLGIIGGCNIQFALDPKSKQYYLIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 41.8 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 100/320 (31%), Gaps = 42/320 (13%) Query: 1 MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAH 48 +A++ G G E + S S ALE G++ I+ D V L Sbjct: 557 VAIIGSGPIRIGQGVEFDYS--SVHGVL-ALEKEGYETILINNNPETVSTDFEVADRLYF 613 Query: 49 LKPDL--AFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 + NVL G + + + + ++ + D Sbjct: 614 EPVTVEDVLNVLDAENVTDVIVQYGGQTAISLVKGLEEAGVNLLGITNDVIDALEDRDLF 673 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + + + P +I+P G++ I+ + + L Sbjct: 674 YKLLDDCDIPHIPGEMAKDAKELVKKAKDMGFPLLIRPSYVIGGKGMLTIQNETELQACL 733 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + + +LI+ Y G E V+ D + P + + S +S + Sbjct: 734 PAIKASHF--PMLIDAYFPGKEAEVDVVADGKDVLI----PTIVEHIEKAGVHSGDSYAL 787 Query: 215 LPAKIPLDIYKEVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 LPAK +KE A + +GI ++ + +V+ LE+N + T Sbjct: 788 LPAKTVKAAHKEKMVSYAQKIVNKLQYKGIMNIQYVI--YNDEVYMLEVNPRASRT---- 841 Query: 274 FPEMAAYAGYSFRELLLWMV 293 P ++ L ++ Sbjct: 842 VPVVSKVCNTPLVSLSTQIL 861 >gi|289192037|ref|YP_003457978.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Methanocaldococcus sp. FS406-22] gi|288938487|gb|ADC69242.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Methanocaldococcus sp. FS406-22] Length = 491 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 90/297 (30%), Gaps = 38/297 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G ++ + + V ++ +PD Sbjct: 26 SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + IL+ I S I ++ D+ + V C + Sbjct: 86 TMGGQTGLNLALELHRRGILDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEPVTKCKA 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + ++ Q+LI++ Sbjct: 146 VNSVDEAIEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELMDIASKGLKYSIIHQVLIDE 205 Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + + + + + ++ LP + + Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G F + + +E+N P ++ S + GY Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314 >gi|170759037|ref|YP_001787167.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum A3 str. Loch Maree] gi|226700926|sp|B1KT07|CARB_CLOBM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|169406026|gb|ACA54437.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum A3 str. Loch Maree] Length = 1068 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ G + + D D V ++ KP+ G Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPNGIILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T +G + A +K P I ++ Sbjct: 640 QTAIKLAKFLKEKNIPILGTTAGQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + N + +LI++Y+ G E+ Sbjct: 700 TKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKNKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P + DI +++ IG Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +++ G +V I+ + V V+A +PD Sbjct: 29 SGTQACEGVKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTVEFVEKVIAKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ L+ + + I + D+ + V+S PV S Sbjct: 89 GMGGQTGLNLAVELYDKGILKKCGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTDIENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILALGLQVSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + V + ++ + + Y+ ++ Sbjct: 209 SVKGW-KEIEYEVMRDSRGNCVTVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +IG +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SINIINSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|119025554|ref|YP_909399.1| carbamoyl-phosphate synthase large chain [Bifidobacterium adolescentis ATCC 15703] gi|167006436|sp|A1A0T4|CARB_BIFAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|118765138|dbj|BAF39317.1| carbamoyl-phosphate synthase large chain [Bifidobacterium adolescentis ATCC 15703] Length = 1126 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + + + ++ D +LIE+ Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIHYSPTDHVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 SIEGWKEYELELMRDKKDNVLVVCPIQNVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVNPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|169796465|ref|YP_001714258.1| putative multifonctional protein [Includes: putative carbamoyl-phosphate synthase L chain; putative biotin carboxylase; putative allophanate hydrolase subunit 2 and 1] [Acinetobacter baumannii AYE] gi|169149392|emb|CAM87276.1| putative multifonctional protein [Includes: putative Carbamoyl-phosphate synthase L chain; putative Biotin carboxylase; putative Allophanate hydrolase subunit 2 and 1] [Acinetobacter baumannii AYE] Length = 1110 Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|294497450|ref|YP_003561150.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM B1551] gi|294347387|gb|ADE67716.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM B1551] Length = 1036 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G++V I+ + + V ++A KPD Sbjct: 29 SGTQACLSLKEEGYEVILINNNPATIMTDTHVADRIYFEPLTVDCVEKIIAKEKPDGLLA 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ + + ++ T + S ++ R+ + VP Sbjct: 89 TLGGQTGLNLALELHEQNILPKYDVKLLGTPIESIKKGESREEFRALMNELNEPVPESEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + Q LIE+ Sbjct: 149 VTKVEEALAFAEKIGFPVIVRPAYTLGGTGGGIAHSMEELEKLSASGLRESAITQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G ++ T I + + ++ + + Y+ ++ Sbjct: 209 SIAG-FKEVEYEVMRDVNNTCITICNMENIDPVGVHTGDSVVVAPSQTLTDVEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++G G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SVKIISSLGIIGGCNIQFALDPKSKQYYLIEVN--PRVSRSS--ALASKATGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 100/320 (31%), Gaps = 42/320 (13%) Query: 1 MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAH 48 +A++ G G E + S S ALE G++ I+ D V L Sbjct: 557 VAIIGSGPIRIGQGVEFDYS--SVHGVL-ALEKEGYETILINNNPETVSTDFEVADRLYF 613 Query: 49 LKPDL--AFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94 + NVL G + + + + ++ + D Sbjct: 614 EPVTVEDVLNVLDAENVKDVIVQYGGQTAISLVKGLEEAGVNLLGITNDVIDALEDRDLF 673 Query: 95 RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154 + + + P +I+P G++ I+ + + L Sbjct: 674 YKLLDECDIPHIPGEMAKDEQELVQKAKDMGFPLLIRPSYVIGGKGMLTIQNETELQACL 733 Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214 + + +LI+ Y G E V+ D + P + + S +S + Sbjct: 734 PAIKASHF--PMLIDAYFPGKEAEVDVVADGKDVLI----PTIVEHIEKAGVHSGDSYAL 787 Query: 215 LPAKIPLDIYKEVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 LPAK +KE A + RGI ++ + +V+ LE+N + T Sbjct: 788 LPAKTVDAAHKEKMVSYAQKIVNKLQYRGIMNIQYVI--YNDEVYMLEVNPRASRT---- 841 Query: 274 FPEMAAYAGYSFRELLLWMV 293 P ++ L ++ Sbjct: 842 VPVVSKVCNTPLVSLSTQIL 861 >gi|241667587|ref|ZP_04755165.1| carbamoyl phosphate synthase large subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876132|ref|ZP_05248842.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842153|gb|EET20567.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1094 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQTMEQACKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPETGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 37/326 (11%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + +++ G + + I T + Sbjct: 626 KLYFEPLMAENVLDIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + ++ Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + ++ +LI+++++ V A + + Sbjct: 746 KEELDAYIKTNAKCILEGPILIDKFLEN-ATELDVDALADGGDRVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|325690585|gb|EGD32588.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK115] Length = 1059 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRSKQVVSSCGVPVCPSI 111 L G G + ++ L + ++DK + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDKAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|94498549|ref|ZP_01305104.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. SKA58] gi|94421992|gb|EAT07038.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. SKA58] Length = 1111 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + V ++ +PD Sbjct: 29 SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVTKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + + LE + + A + D+++ + + G+ S Sbjct: 89 TMGGQTALNTALALFNDGTLEKFGVQMIGADAEAIDKAEDRIKFRDAMDKIGLESARSRI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D+ P +I+P G + + + ++LIE+ Sbjct: 149 AHTMEEALDALEFTGLPAIIRPSFTMGGTGGGIAYNRDEFVSIVRGGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + I P +++P + ++ + + + + +LI+QY D +E+ Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAVEVDV 799 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + +S ++ + P + DI E++R A + +A+ Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSADIIAEIERQADVLARALS 856 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 RG+ F V+ +E+N + T P +A G ++ Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902 >gi|169335520|ref|ZP_02862713.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM 17244] gi|169258258|gb|EDS72224.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM 17244] Length = 1074 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 90/303 (29%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A+ + GF+V I+ + SV ++ +PD Sbjct: 29 SGTQACEAIREEGFEVVLINSNPATIMTDKQTADKVYIEPITLESVVKIIEKERPDAIIG 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G + ++ +++ T + D+ R + Sbjct: 89 GMGGQTALNMTMELHNKGILDKYGIKVIGTSVEGIMKGEDRDEFRKLMQEIGQPIIESRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G ++ + + S + Q+LIE+ Sbjct: 149 VNTLEDAKKAALDIGYPVVVRPAYTLGGTGGGIVNNEDELLKIAESGLSLSMTTQILIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + + + + +S V P + + ++ Sbjct: 209 SI--KNWKEIEYEVMRDSNGTCITICNMENIDPVGIHTGDSIVVAPTQTLSDKECQMLRS 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+G G F P S + +EIN P ++ S + GY ++ Sbjct: 267 ASLDIIEAVGIEGGCNVQFALHPDSMEYAIIEIN--PRVSRSS--ALASKAVGYPIAKVS 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 12/245 (4%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 D V + KPD G + E + I T + A ++ + Sbjct: 618 DEDVLNIYNKEKPDGVILQFGGQTAIKLAEMCVRENIPILGTSPDSIDKAEDRERFEAML 677 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 P + + I P +++P G+++ ++S+ L + Sbjct: 678 SKLGVKQPKGKGVFTVEEGKEIAQKIGYPVLVRPSYVLGGRGMMICHDEESLIKYLTNAI 737 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + + +LI++Y+ G+E+ + D P + S +S + P + Sbjct: 738 KEDGKNPVLIDKYLFGLEVEVDAVCDGVDVFV----PGIMEHLDRAGVHSGDSATLYPTR 793 Query: 219 I-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVS 272 I + + + +G+ F+ +++ +E+N P +T ++ Sbjct: 794 HVSDKIKETLYDYTRKIALELNVKGMINIQFIV--FKDELYVIEVNPRSSRTVPYITKIT 851 Query: 273 IFPEM 277 P + Sbjct: 852 NVPIL 856 >gi|110800466|ref|YP_697261.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens ATCC 13124] gi|168209813|ref|ZP_02635438.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens B str. ATCC 3626] gi|122958642|sp|Q0TM79|CARB_CLOP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|110675113|gb|ABG84100.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens ATCC 13124] gi|170712157|gb|EDT24339.1| carbamoyl-phosphate synthase, large subunit [Clostridium perfringens B str. ATCC 3626] Length = 1067 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 11/254 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD G + + T S + A ++ Sbjct: 619 EDVLNIIDKEKPDGVILQFGGQTAIKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLE 678 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 + P + ++ + P +++P G+ + ++ + L + Sbjct: 679 RLNIARPKGKGVWSLEEGLEEARRLGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFE 738 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AK 218 + + +LI++Y+ G E+ + D + P + S +S + P Sbjct: 739 KDSKNPILIDKYLMGREIEVDAISDGEDVLV----PGIMEHLERAGVHSGDSITMYPAQN 794 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 I I ++V +IG +G+ F+ K++ +E+N + T P ++ Sbjct: 795 ISDKIKEDVLDYTKKLALSIGIKGMINIQFI--EFEGKLYVIEVNPRASRT----VPYIS 848 Query: 279 AYAGYSFRELLLWM 292 +G ++ + Sbjct: 849 KVSGVPIVDIATRI 862 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + V V+ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + + IL+ + + I + D+ + +++ PV S Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|118378204|ref|XP_001022278.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Tetrahymena thermophila] gi|89304045|gb|EAS02033.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing protein [Tetrahymena thermophila SB210] Length = 673 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 22/251 (8%) Query: 32 KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83 + ++ S+ L K D + +H G E+ +I + Sbjct: 47 QAYRVGPAPSLQSYLNSQKIIEIAHDSNCSAIHPGFGFLSENADFADECTTNKIIFVGPP 106 Query: 84 ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139 A K SK ++++ VPV P D I P +IK + GG Sbjct: 107 TDAIRKMGSKSESKIIMTNAKVPVVPGYHGENQDKDYLFEQARSIGFPVLIKAVLGGGGK 166 Query: 140 GIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194 G+ ++ K+ L + + L+ + + V GD + + Sbjct: 167 GMRIVTKESEFFEALESAKRESLKAFKDDRVLIEKYIQKPRHIEVQVFGDHHGNYVHL-- 224 Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254 ++ P+ I D+ + A A +A+G +F+FD +S Sbjct: 225 ---FERDCSIQRRHQKVIEEAPSNINWDLRNSIGSSAVDAAKAVGYYNAGTVEFIFDLIS 281 Query: 255 RKVFWLEINVQ 265 + +++E+N + Sbjct: 282 NQYYFMEMNTR 292 >gi|306823312|ref|ZP_07456687.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium dentium ATCC 27679] gi|309802567|ref|ZP_07696671.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium dentium JCVIHMP022] gi|304553019|gb|EFM40931.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium dentium ATCC 27679] gi|308220631|gb|EFO76939.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium dentium JCVIHMP022] Length = 1126 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ ++ + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|283455660|ref|YP_003360224.1| carbamoyl-phosphate synthase large chain [Bifidobacterium dentium Bd1] gi|283102294|gb|ADB09400.1| carB Carbamoyl-phosphate synthase large chain [Bifidobacterium dentium Bd1] Length = 1126 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ ++ + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|213156422|ref|YP_002318842.1| urea amidolyase [Acinetobacter baumannii AB0057] gi|213055582|gb|ACJ40484.1| urea amidolyase [Acinetobacter baumannii AB0057] Length = 769 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|212716892|ref|ZP_03325020.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM 16992] gi|212660177|gb|EEB20752.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM 16992] Length = 1126 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|171743369|ref|ZP_02919176.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC 27678] gi|171278983|gb|EDT46644.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC 27678] Length = 1113 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 16 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 75 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ ++ + + A D+ K+VV G S Sbjct: 76 TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 135 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + ++ + ++ D++LIE+ Sbjct: 136 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 195 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 196 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 255 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 256 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 311 Query: 291 WM 292 + Sbjct: 312 KL 313 >gi|145220244|ref|YP_001130953.1| carbamoyl-phosphate synthase large subunit [Prosthecochloris vibrioformis DSM 265] gi|145206408|gb|ABP37451.1| carbamoyl-phosphate synthase large subunit [Chlorobium phaeovibrioides DSM 265] Length = 492 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D+D V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVILVNSNPATIMTDIDLADATYIEPITPEYVQKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVSLAESGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + I P +I+P G + + + + ++L+E+ Sbjct: 149 VRNEKEAREALEEIGLPIIIRPSFTLGGTGGGFAETKAEYYDAVRHGLAESPIGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 CLFGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQELRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VRIIREIGVETGGSNIQFAINPENGRIVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|300691214|ref|YP_003752209.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate synthetase ammonia chain) [Ralstonia solanacearum PSI07] gi|299078274|emb|CBJ50922.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) [Ralstonia solanacearum PSI07] Length = 1081 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + GFKV + DV V ++A +PD Sbjct: 29 SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + P VI+P G + + + + Sbjct: 149 AHSLEEALAVQSQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADE 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVG 828 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875 >gi|332854998|ref|ZP_08435654.1| urea carboxylase [Acinetobacter baumannii 6013150] gi|332869484|ref|ZP_08438802.1| urea carboxylase [Acinetobacter baumannii 6013113] gi|332727692|gb|EGJ59105.1| urea carboxylase [Acinetobacter baumannii 6013150] gi|332732714|gb|EGJ63936.1| urea carboxylase [Acinetobacter baumannii 6013113] Length = 1201 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|215483928|ref|YP_002326153.1| urea carboxylase [Acinetobacter baumannii AB307-0294] gi|301347132|ref|ZP_07227873.1| urea carboxylase [Acinetobacter baumannii AB056] gi|301510152|ref|ZP_07235389.1| urea carboxylase [Acinetobacter baumannii AB058] gi|301594663|ref|ZP_07239671.1| urea carboxylase [Acinetobacter baumannii AB059] gi|213987692|gb|ACJ57991.1| urea carboxylase [Acinetobacter baumannii AB307-0294] Length = 1201 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|255658273|ref|ZP_05403682.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida DSM 20544] gi|260849586|gb|EEX69593.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida DSM 20544] Length = 1065 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + +++ +PD Sbjct: 20 GSQACRALKEEGLEVVLVNSNPATIMTDTHIADRVYIEPLTVEFLEEIISKERPDGLLAT 79 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ LE + + + A + D+ + +P + Sbjct: 80 LGGQAGLNLAVQLSEKGVLEKYHVELLGTPLKAIERAEDRELFKETMQKLGEPIPESTIV 139 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G + + ++ + +++ +++ Q+LIE+ Sbjct: 140 EDVPSAVEFANEIGYPVIVRPAYTMGGTGGGIAENEEELVEIVIKGLTYSMIGQVLIERS 199 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + Y+ ++ + Sbjct: 200 VAGWKEIEYEVMRDGHDNCITVCNMENFDPVGVHTGDSIVVAPSQTLTDHE-YQMLRSAS 258 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + + DP S + + +E+N P ++ S + GY ++ Sbjct: 259 LRIIRELGIEGGCNAQYALDPNSNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 314 Query: 292 M 292 + Sbjct: 315 I 315 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 86/289 (29%), Gaps = 30/289 (10%) Query: 25 ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + I D+ V ++ P+ G Sbjct: 572 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKENPEGVIVQFGGQTA 631 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + +++ T + A ++ + P S+ + Sbjct: 632 INLAASLQKAGVKVFGTSVDDIDRAEDRERFDEVLTQTQIPRPQGISVTNLDEAVTGAAK 691 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +L+++Y+ G E+ + Sbjct: 692 IGYPVMVRPSYVLGGRAMEIVYNEAELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDGIS 751 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + + + ++ +G+ Sbjct: 752 DGVDVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSSKVIYTIIDYTKRLALSLHVKGL 808 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F+ + +V+ +E+N + T P ++ L + Sbjct: 809 LNIQFVV--VDGEVYIIEVNPRSSRT----VPFLSKVTNVDMVGLATRI 851 >gi|317496520|ref|ZP_07954869.1| carbamoyl-phosphate synthase [Gemella moribillum M424] gi|316913323|gb|EFV34820.1| carbamoyl-phosphate synthase [Gemella moribillum M424] Length = 1058 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +L+ + + + + + D+ R+ + VP I Sbjct: 90 LGGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTVEEAYDFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPESFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 91/284 (32%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ H P G Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + +A DK P+ + + + Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLRKLEIPQPLGKTAFDVETAVKNAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + + +L ++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEESELRRYMKTAVKLSPEHPVLTDRYLVGREIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQNEKDKLIEYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282 ++ +VF LE+N P ++ ++ P AG Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858 >gi|311029956|ref|ZP_07708046.1| carbamoyl phosphate synthase large subunit [Bacillus sp. m3-13] Length = 1071 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + G++V ++ + V ++ +PD Sbjct: 30 GTQACIALREEGYRVILVNSNPATIMTDQEMADKVYMEPLTVEFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ ++I T + A D R+ VP I Sbjct: 90 LGGQTGLNLAVELAEAGVLEECNVQILGTKLSAIQKAEDRDLFRTLMNELGEPVPQSEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + P +++P G + ++ + + + Q L+E+ Sbjct: 150 TNLEEAYEFINEVGYPVIVRPAYTLGGTGGGICSDEEELIEIVTSGLKNSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 90/285 (31%), Gaps = 31/285 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMNIINLEKPKGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + DK P + + ++ Sbjct: 640 INLAAELEARGVKILGTSLEDLDRAENRDKFEQTLNTLEIPQPKGKTAISIPEAIEIAEG 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K + + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKSEELLHYMKNAVKINPEHPVLIDKYMTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + I +++ Q + G+ Sbjct: 760 DGKDVFIPGIMEHIERAG---VHSGDSIAVYPPQTLSAAIKEQIIDYTRRLAQGLNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGY 283 F+ +V+ +E+N P ++ ++ P Sbjct: 817 LNIQFVI--YKEEVYVIEVNPRSSRTVPFLSKITHVPMAKVATKI 859 >gi|255528110|ref|ZP_05394940.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] gi|255508206|gb|EET84616.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] Length = 864 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG A+++ G + I+ + + V ++ +PD Sbjct: 29 SGTQACKAIKEEGIETILINSNPATIMTDSNMADKVYIEPLTLECVKEIIEKERPDGILA 88 Query: 57 VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G +++ +S + A ++ + + ++ +P+ Sbjct: 89 GFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLMIENNQPIPMSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D P +I+P G + + + + Q+L+EQ Sbjct: 149 ATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGIKMSPIGQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G I + + ++ + + Y +++ Sbjct: 209 SVAGW-KELEYEVIRDGKDNCIIICNMENIDPVGIHTGDSIVVAPSQTLRDKEYHMLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +++ G F D S +E+N P ++ S + GY ++ Sbjct: 268 AIDIIRSLKIEGGCNIQFALDTESSNYVVIEVN--PRVSRSS--ALASKATGYPIAKIAS 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV------------LHGNFG 63 A+++ G K I D D + L L D N+ L G Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVEGVIVQLGGQTS 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I + + A DK R + P +++ + Sbjct: 640 INLAQKLYEKGVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAVEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P V++P + V+ + + + ++ + +LI++Y+ G E+ + Sbjct: 700 LQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + T + + + + + G+ Sbjct: 760 DGEDILMPGIMEHVERTG---VHSGDSITVYPYMTLKEETINTLIEYTKKITKNMNIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 ++FD V+ +E+N + T P ++ G ++ Sbjct: 817 VNIQYVFD--GNNVYVIEVNPRASRT----VPILSKVTGVPMVKI 855 >gi|90406900|ref|ZP_01215091.1| carbamoyl-phosphate synthase large subunit [Psychromonas sp. CNPT3] gi|90311942|gb|EAS40036.1| carbamoyl-phosphate synthase large subunit [Psychromonas sp. CNPT3] Length = 1076 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++A +P Sbjct: 29 SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPIHWKVVEKIIAKERPCAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+ + + A + D+ R + S G+ + Sbjct: 89 TMGGQTALNCALELEQKGVLKKYNVEMIGATADAIDKAEDRSRFDAAMKSIGLECPRAGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ P +I+P G + + S + +LLI++ Sbjct: 149 AHNMQEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEDICSNGLSLSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDSNDNCIIVCCIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVLIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL GF+ + D+ V ++ KP G Sbjct: 587 ALRADGFETIMVNCNPETVSTDYDISDRLYFESITLEDVLEIVRIEKPQGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P ++L + Sbjct: 647 LKLARALEEQGVPIIGTSPDAIDCAEDRERFQKIVQGLGLKQPDNDTVLSLDGALLVAKR 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D + + ++ +L+++++D V Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDDVDLTRYFSEVVDASNTSPILLDRFLDD---AIEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D T++ + + + S +S LPA +I E++ +G G Sbjct: 764 DAICDGTDVVIGGIMEHIEQAGVHSGDSACSLPAHTLSQEIQDEMRVYIKALALELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + +++ +E+N + T P ++ G ++ Sbjct: 824 LMNTQLAV--KDNEIYMIEVNPRAART----VPFVSKATGVPIAKIAAR 866 >gi|22299875|ref|NP_683122.1| carbamoyl phosphate synthase large subunit [Thermosynechococcus elongatus BP-1] gi|22296060|dbj|BAC09884.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Thermosynechococcus elongatus BP-1] Length = 1100 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V V+A +PD Sbjct: 29 SGTQACKALREEGYEVILINSNPATIMTDPEIADRTYIEPLTPEMVEKVIAAERPDALLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A ++ D+ K+ + GV VCPS L Sbjct: 89 TMGGQTALNLAVALAKSGVLDRYGVELIGAKLPAIEMAEDRKLFKEAMQRIGVAVCPSGL 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N P +I+P G + + + Q+LIE Sbjct: 149 ANTLEEARAIAQEIGVYPLIIRPAFTLGGTGGGIAYNQEEFEAIATAGLEASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPETGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 7/172 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ + + + + G +LI++Y++ + Sbjct: 728 AERIGYPVVVRPSYVLGGRAMEIVYSNGELERYMNAAVQVEPGRPILIDKYLEN-AIEVD 786 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V A T + + +S ++ + + + + ++ + QA+ Sbjct: 787 VDAIADATGTVVIGGIMEHIEQAGIHSGDSACSLPTQSLSPAVLQTIRTWSIALAQALKV 846 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ +V+ LE N + T P ++ G ++ + Sbjct: 847 VGLMNLQLAV--QGDQVYILEANPRASRT----VPFVSKAIGIPLAKVAARL 892 >gi|253998665|ref|YP_003050728.1| urea carboxylase [Methylovorus sp. SIP3-4] gi|253985344|gb|ACT50201.1| urea carboxylase [Methylovorus sp. SIP3-4] Length = 1208 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 16/186 (8%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P ++K GG +G+ +I ++ + + + Y++ Sbjct: 146 HAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGLYLEKYVEAA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + V ++ + PA + I +++ A AI Sbjct: 206 RHIEVQIFGDGAGHVVALGERDCSVQRRNQKVIEETPAPNISEAIRQQLAETAVRLASAI 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G R +F++D S ++LE+N + G+T + +G +L+ WM+ Sbjct: 266 GYRSAGTVEFVYDNASGDFYFLEVNTRLQVEHGVTEL--------VSGV---DLVGWMIR 314 Query: 295 DASCLR 300 A+ R Sbjct: 315 LAAGER 320 >gi|254180207|ref|ZP_04886806.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1655] gi|184210747|gb|EDU07790.1| carbamoyl-phosphate synthase, large subunit [Burkholderia pseudomallei 1655] Length = 1084 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV + D + V ++A +PD Sbjct: 29 SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +LE + + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLFRHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + + ++ ++ +L++++ D IE Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + +S ++ + P + + E++R +A Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQMVAELKRQTGAMAKA 820 Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G+ F ++ LE+N + T P ++ ++ Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876 Query: 291 W 291 Sbjct: 877 R 877 >gi|190574173|ref|YP_001972018.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas maltophilia K279a] gi|190012095|emb|CAQ45717.1| putative carbamoyl-phosphate synthase large chain [Stenotrophomonas maltophilia K279a] Length = 1080 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + +V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T+D I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 92/291 (31%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + C V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDN-AVECDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + + +S +S + P + + E++R +A+ G+ Sbjct: 767 IADKEGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F D + ++ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQTSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873 >gi|71891910|ref|YP_277640.1| carbamoyl-phosphate synthase, large chain [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796016|gb|AAZ40767.1| carbamoyl-phosphate synthase, large chain [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 1075 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D + + ++ PD + Sbjct: 29 SGAQACKALREEGYRIILVNSNPATIMTDPDMADVTYIEAIQWKIIHKIIEKEHPDALLS 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D IL+ I + I + + D+ + ++ + + S Sbjct: 89 TMGGQTALNCTLDLERHGILKKFNIITIGATIDSICKAEDRQKFRESMKKISLETARSGV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M I P +I+P G V + +LLI++ Sbjct: 149 ARDIDEAMMVLEKIGLPCIIRPSFTLGGTGGGVAYTQEEFEKLCRYRLDSYPHHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVIRDIKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G + F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IMVLREIGVETGGANVQFAVNPNNGRLIVVEMN--PRVSRSS--ALASKATGFPIAKIAS 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 93/291 (31%), Gaps = 33/291 (11%) Query: 22 CASA--LEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 +A L ++G+ V + D+ + ++ KP Sbjct: 583 VHAAITLRESGYHVIMVNCNPETVSTDYDISDILYFEPITLEDILEIIRINKPTGVIVQY 642 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + + I T + A + ++ + P +++ + + Sbjct: 643 GGQTPLKLVKEMEASGISIIGTSPDAIDQAENRERFQRSIKCLGLQQPDNATVISIQSAL 702 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 I P V++P + ++ ++ + + ++ +L++ +++ IE+ Sbjct: 703 KKAKNIGYPIVVRPSYVLGGRAMEIVYNEKELLFYFKNAILVSNNAPVLLDSFLENAIEV 762 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + Y +S ++ + + +I ++ Sbjct: 763 DVDAICDGKQVFIGGIM---EHIEYAGIHSGDSACSLPAHTLSKNIQDRIRCQVKELAFK 819 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ F +++ +EIN + T P ++ G ++ Sbjct: 820 FNIKGLVNIQFAI--QKDEIYIIEINPRASRT----IPFVSKATGMELAKI 864 >gi|281355629|ref|ZP_06242123.1| urea carboxylase [Victivallis vadensis ATCC BAA-548] gi|281318509|gb|EFB02529.1| urea carboxylase [Victivallis vadensis ATCC BAA-548] Length = 1199 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + D + + + + +V+ Sbjct: 147 ARGIGYPVMLKSTAGGGGIGMCVCRSDAELAAGFERIGRLSRNNFKDSGLFVEKYVECSR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIG 239 + V + + PA + + A + + Sbjct: 207 HIEVQLFGDGRGHVAILGERDCSTQRRNQKVIEETPAPGLPEATRAALHAAARRLGEGVA 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D + ++LE+N + G+T A G +L+ WM+ + Sbjct: 267 YRSAGTVEFIYDCRTGDFYFLEVNTRLQVEHGVTE--------AVFGI---DLVKWMILE 315 Query: 296 ASCL 299 A+ Sbjct: 316 AAGN 319 >gi|323127062|gb|ADX24359.1| carbamoyl phosphate synthase large subunit [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1058 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +Q + E+ T + A D+ + +P + Sbjct: 90 LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q LIE+ Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + + ++ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ +P G Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + D+ P + + + Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +LI+ Y+ G E + Sbjct: 699 HIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTTVKASPEHPVLIDSYIVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGESVLIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|307721399|ref|YP_003892539.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas autotrophica DSM 16294] gi|306979492|gb|ADN09527.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas autotrophica DSM 16294] Length = 1085 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 86/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L++ G++V I+ + + ++ D Sbjct: 29 SGTQAVKTLKELGYRVILINSNPATIMTDPEFADRTYIEPIKEDVIAKIIKDENVDAVLP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112 + G + + + + G A++ + R + + + + Sbjct: 89 TMGGQTALNVAMSMYEKGMLEGIEFLGAKPEAINKGEDRQLFNEAMTKIGMDLPKSRNAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P + + + G V + + S + +++ I + + Sbjct: 149 SVEEAIEVVKEIGFPVISRASFTLAGGGSGVAYNMEEFKKLAQEGISASPVNEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I +F + + + + Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F DP + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREVGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 94/262 (35%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ + PD ++H + L + + + L+ D Sbjct: 616 FEPIDF-EHVREVIENENPDGI--IVHFGGQTPLKLADSLTKIGAKISGTPSSVIDLAED 672 Query: 93 KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V + + + + + + P +++P G+ ++ + + Sbjct: 673 REQFSDFVKAHNLKQPANGLARTKEESYVIANKLGYPVLVRPSFVLGGRGMRIVYSEDEL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + S ++ +LI++++D IEL + D + + + Sbjct: 733 RQYMDLAISVSNEAPVLIDKFLDQAIELDVDCICDGTDVYIGSVMQHIEEAGIHSG---D 789 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ ++V++ + +G RG+ + +++ +E+N + T Sbjct: 790 SACSLPPMNLSKEMIEKVEQQTKVIALGLGVRGLMNVQYAI--YQDEIYLIEVNPRASRT 847 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ----VPFVSKATGMPLAKVATR 865 >gi|251782209|ref|YP_002996511.1| carbamoyl phosphate synthase large subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390838|dbj|BAH81297.1| carbamoyl-phosphate synthase large chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1058 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +Q + E+ T + A D+ + +P + Sbjct: 90 LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q LIE+ Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + + ++ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 87/290 (30%), Gaps = 30/290 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ +P G Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + D+ P + + + Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +LI+ Y+ G E + Sbjct: 699 HIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGESVLIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ +V+ +E+N + T P ++ ++ + Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKL 859 >gi|327441130|dbj|BAK17495.1| carbamoylphosphate synthase large subunit [Solibacillus silvestris StLB046] Length = 1065 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G+KV I+ + V +L +PD + Sbjct: 30 GTQACLSLKEEGYKVILINSNPATIMTDTEIADKVYIEPISLEFVSRILRKERPDAILST 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + EI T + A D R+ VP I Sbjct: 90 LGGQTGLNMAIELDESGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + DQ + + ++ Q L+E+ Sbjct: 150 HNMEEAKAFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLQEIVTSGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + + + ++ ++ Sbjct: 210 IAGFKEIEYEVMRDAADNAIVVCNMENFDPVGIHTGDSIVVAPTQTLSDRE-NQMLRNIS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/279 (10%), Positives = 90/279 (32%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A + +K + P + M Sbjct: 640 INLADKLEANGVKILGTTLEDIDRAENRNKFETALQELKIPQPPGDTATSAEGAMKIAEG 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + + + + +L+++Y+ G E+ + Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNMEELAHYMTNAVEASPDHPVLVDRYLTGQEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + P K+ + + + +G G+ Sbjct: 760 DGENVLIPGIMEHVERAG---VHSGDSISVYPPQKLTDAQKEILVDYTTRLAKGLGIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +++ +E+N P ++ ++ P Sbjct: 817 MNIQYVMSE--GEIYVIEVNPRSSRTVPFLSKITNIPMA 853 >gi|320329992|gb|EFW85979.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. glycinea str. race 4] Length = 1073 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|320322539|gb|EFW78632.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. glycinea str. B076] Length = 1073 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G+ S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|172036953|ref|YP_001803454.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. ATCC 51142] gi|171698407|gb|ACB51388.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. ATCC 51142] Length = 1081 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 98/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+A +P+ Sbjct: 29 SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPNALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A ++ D+ K ++ GVPVCPS + Sbjct: 89 TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148 Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + S P +I+P G + + + Q+L+E Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I +F + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + +V +E+N P ++ S + G+ + Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ P G V L + ++ Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSPQCPVQTKIWGTSPDSIDTAED 681 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + I + + I P V++P + ++ D+ + Sbjct: 682 RERFEKILHNLDIKQPPNGISRSYEESLAVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + +LI+++++ + V + + +S + Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLEN-AIEVDVDALCDTTGKVVIGGIMEHIEQAGVHSGDS 800 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 + V + + + ++ ++ G+ + +V+ LE N + T Sbjct: 801 ACSVPYTTLSKSVIETIRTWTVALANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857 Query: 271 VSIFPEMAAYAGYSFREL 288 P ++ G ++ Sbjct: 858 ---VPYVSKATGRPLAKI 872 >gi|56708675|ref|YP_170571.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110671147|ref|YP_667704.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. tularensis FSC198] gi|134302748|ref|YP_001122716.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224457882|ref|ZP_03666355.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254371307|ref|ZP_04987309.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis FSC033] gi|254875549|ref|ZP_05248259.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis MA00-2987] gi|56605167|emb|CAG46297.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis SCHU S4] gi|110321480|emb|CAL09680.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis FSC198] gi|134050525|gb|ABO47596.1| Carbamoyl-phosphate synthase, large subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151569547|gb|EDN35201.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis FSC033] gi|254841548|gb|EET19984.1| carbamoyl-phosphate synthase large chain [Francisella tularensis subsp. tularensis MA00-2987] gi|282159922|gb|ADA79313.1| carbamoyl phosphate synthase large subunit [Francisella tularensis subsp. tularensis NE061598] Length = 1094 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTTDKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQSLEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + +I Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +S +LI+++++ V A + + Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|322411552|gb|EFY02460.1| carbamoyl phosphate synthase large subunit [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1058 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYQVILVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +Q + E+ T + A D+ + +P + Sbjct: 90 LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q LIE+ Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + + ++ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ +P G Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A + D+ P + + + Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKTLKALGIPQPPGQTATDEAEALAAAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +++P + +++ + + + + + +LI+ Y+ G E + Sbjct: 699 HTGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKEFEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGESILIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|241889438|ref|ZP_04776739.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans ATCC 10379] gi|241863981|gb|EER68362.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans ATCC 10379] Length = 1058 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + IL+ + + + + + D+ R + VP I Sbjct: 90 LGGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + ++ Q L+E+ Sbjct: 150 TTLDEAREFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ H P G Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + +A DK P+ + + + Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + +L ++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282 ++ +VF LE+N P ++ ++ P AG Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858 >gi|304405832|ref|ZP_07387490.1| urea carboxylase [Paenibacillus curdlanolyticus YK9] gi|304345075|gb|EFM10911.1| urea carboxylase [Paenibacillus curdlanolyticus YK9] Length = 1217 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 19/269 (7%) Query: 37 DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 ++ + L +A A + +G E+ I + + K + Sbjct: 60 YLNADLILQIAEETGAQAIHPGYGFLSENAGFARACRERGIAFIGPTPEQMEMFGLKHSA 119 Query: 97 KQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 +++ GVP+ P + + +I P ++K GG +G+ V +++Q + Sbjct: 120 RELAEKAGVPMLPGTPLITELEQAVSAASVIGYPVILKSTAGGGGIGMRVCEEEQELRSA 179 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + +++ + V ++ + Sbjct: 180 FESVRHLAETNFKNGGVFLEKYIAKARHVEVQIFGNAFGEVVALGERDCSIQRRNQKVIE 239 Query: 214 VLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGM 268 P K + + + A G R +FL+DP S + ++LE+N + G+ Sbjct: 240 ESPAPKFAQAVRERMFEAARSLAAEAGYRSAGTVEFLYDPQSSEFYFLEVNTRLQVEHGV 299 Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 T G +L+ WMV++A+ Sbjct: 300 TE--------EVLGL---DLVEWMVKEAA 317 >gi|266621406|ref|ZP_06114341.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi DSM 13479] gi|288866920|gb|EFC99218.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi DSM 13479] Length = 1064 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 34/297 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KPD A G Sbjct: 581 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ ++ H Sbjct: 641 IKLTESLMKMGVPILGTAAEDVDAAEDRELFDKILEECRIPRPAGHTVFTAEEAKEAAHK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + DQ + + + +L+++Y+ G E+ + Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAISDQDVDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + S + ++ + +A+ +G+ Sbjct: 761 DGTDILIPGIMQHIERTGIHSGDSISVYPAPDLTEKNIET---LVDYTEKLARALHVKGM 817 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 F+ D V+ +E+N + T P ++ G L ++ C R Sbjct: 818 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII----CGR 864 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 97/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + ++ + + L + D+ K+ + V + Sbjct: 90 LGGQAGLNLAMELEDAGFFRDHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + + + L + Q+L+E+ Sbjct: 150 EDVKHGLEIAAEIGYPVVLRPAYTLGGSGGGIAENPEQCAEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LKIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYTLDEIKNAVTKK 341 >gi|253828045|ref|ZP_04870930.1| carbamoylphosphate synthetase large subunit [Helicobacter canadensis MIT 98-5491] gi|253511451|gb|EES90110.1| carbamoylphosphate synthetase large subunit [Helicobacter canadensis MIT 98-5491] Length = 1092 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V I D + + ++ K D Sbjct: 29 SGTQAAKTLKKLGYRVVLINSNPATIMTDPNLADRTYIEPITEEVIANIIKQEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE ++ + + + + +P Sbjct: 89 TMGGQTALNVAMSMYEKGMLEGVKFLGANPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + ++LIE+ + Sbjct: 149 TIEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKTLAQNGLDTSPISEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324 Score = 43.3 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 88/262 (33%), Gaps = 16/262 (6%) Query: 32 KVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + V V+ KPD ++H + L + + + Sbjct: 618 DVLYFEPITFECVRSVIEREKPDGV--IVHFGGQTPLKLAKKLTTIGAKIIGTSAKTIDI 675 Query: 90 SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 + D+ + + V G+ + ++ I P +++P + ++ Sbjct: 676 AEDREKFAKFVEENGLLQPKNGTAFTKEEAIEIAQNIGFPVLVRPSYVLGGRAMRIVYNV 735 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ S + +LI+++ + +EL V+ D + + Sbjct: 736 AELQNYMSEAVSVSEDSPVLIDKFLNNALELDVDVICDGKDVYIAGIMQHIEEAGIHSG- 794 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ++ + I + KE++ + +G G+ + + + ++ +E+N + Sbjct: 795 --DSACSIPTISISKEKIKEIEETTAKIARNLGVVGLMNTQYAIFEET--LYLIEVNPRA 850 Query: 267 GMTPVSIFPEMAAYAGYSFREL 288 T P ++ G ++ Sbjct: 851 SRT----VPFVSKATGIPLAKV 868 >gi|224419109|ref|ZP_03657115.1| carbamoyl phosphate synthase large subunit [Helicobacter canadensis MIT 98-5491] Length = 441 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A L+ G++V I D + + ++ K D Sbjct: 29 SGTQAAKTLKKLGYRVVLINSNPATIMTDPNLADRTYIEPITEEVIANIIKQEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE ++ + + + + +P Sbjct: 89 TMGGQTALNVAMSMYEKGMLEGVKFLGANPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + ++LIE+ + Sbjct: 149 TIEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKTLAQNGLDTSPISEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324 >gi|323482996|ref|ZP_08088392.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum WAL-14163] gi|323403702|gb|EGA96004.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum WAL-14163] Length = 1123 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 97/293 (33%), Gaps = 32/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C +L+ AG++V ++ + V ++ KP A G Sbjct: 601 CVWSLKRAGYEVVIVNNNPETVSTDFNVADRLYFEPLTPEDVMDIIRVEKPAGAVVAFGG 660 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + T + + A + + + P ++ + + Sbjct: 661 QTAIRLTKCLVENGVPVLGTPADSIDMAEDRGRFNALLKKLNMKQPSGDTVYTEDEAIAT 720 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P +I+ D I + + +LI++Y+ G EL Sbjct: 721 ANRLGYPVLVRPSYVLGGQNMIIAYHDADIHEYMKIILEHKIENAILIDKYLMGTELEVD 780 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + D + P + S +S V PA + + + + ++G Sbjct: 781 AICDGEDVLI----PGIMEHIERAGVHSGDSIAVYPAFMLTESQKDRIVDYSIRLALSLG 836 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +G+ ++ + ++ +E+N + T P ++ G +L + Sbjct: 837 TKGLINIQYVLHEDT--IYIIEVNPRSSRT----VPYISKVTGVPMVDLATRI 883 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + V ++ KPD + Sbjct: 56 GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRIIDKEKPDSILST 115 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G ++ LE + + + D+ K + G PV PS + Sbjct: 116 LGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTMEEIGEPVIPSEVV 175 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M I P +++P G + K + + + Q+L+E+ Sbjct: 176 TTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIRLSPIHQILVEKC 235 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S+ +F ++ + + Y+ ++ A Sbjct: 236 IAGWKEIEFEVMRDSVGNEITVCSMENFDP-VGIHTGDSIVIAPAVTLADKEYQMLRSAA 294 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 QA+G G F +P S + +E+N P ++ S + GY + Sbjct: 295 LNIIQAMGIEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARVATK 350 Query: 292 M 292 + Sbjct: 351 I 351 >gi|319941333|ref|ZP_08015664.1| carbamoyl-phosphate synthase [Sutterella wadsworthensis 3_1_45B] gi|319805254|gb|EFW02077.1| carbamoyl-phosphate synthase [Sutterella wadsworthensis 3_1_45B] Length = 1081 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 83/302 (27%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L + G++V + D +V ++ +PD Sbjct: 29 SGVQACRVLREEGYRVILVNSNPATIMTDPKTADATYIEPITWETVARIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L G A+ + R + + + + Sbjct: 89 TMGGQTALNCAMDLVHHGVLRRWGVELIGATPEAIDKAEDRERFKKLMTEIGLESARSGA 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P VI+P G + + + + ++LIE+ Sbjct: 149 AHTLEEAFAIQKTVGFPAVIRPSFTLGGTGGGIAYNMDEFLEIVSRGLELSPTSEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQAMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 MAVLRAIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 14/260 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP G + I T + Sbjct: 611 DRLYFEPVTL---EDVLAICEIEKPQGVIVQYGGQTPLKICRALEAHGVPIIGTTPDAID 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + I P V++P + ++ Sbjct: 668 CAEDRERFQKLINQLGLLQPPNRIAHTEDEALAKAEEIGYPIVVRPSYVLGGRAMEIVHT 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + ++ + + +L+++++D +E+ + D + + + Sbjct: 728 PERLVKYMREAVKVSPEEPVLLDRFLDDAVEMDVDAVCDGDVVAVAGVMEHIEQAG---V 784 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEI 262 +S ++ + P + + E++R +A+ G+ F V+ LE+ Sbjct: 785 HSGDSACSLPPYSLAPSLVAEIRRETRELAKALKVVGLMNVQFAVKNAHTEEPVVYVLEV 844 Query: 263 NVQPGMTPVSIFPEMAAYAG 282 N + T P ++ G Sbjct: 845 NPRASRT----VPFVSKATG 860 >gi|225568839|ref|ZP_03777864.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM 15053] gi|225162338|gb|EEG74957.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM 15053] Length = 1074 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 102/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRGLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K+ + S G+ + S Sbjct: 89 NLGGQSGLNLCSELAKAGVLEKYNVQVIGVQVDAIERGEDRIEFKKAMDSLGIEMAKSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 149 AYSVEEALAIADELGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + S + + ++ + I + K +Q Sbjct: 209 SILGWEELELEIVRDSENNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQEQ 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +++ G + F DP+S ++ +EIN + T S + G+ L+ Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 90/291 (30%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T ++ A D R +P + Sbjct: 641 LNLASELEKNGVRILGTSPSVIDLAEDRDLFREMMEKLDIPMPESGMATTVDEALAIAER 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+S+ + + +LI+++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMVSYMNAAVGVTPDRPILIDRFLN---HATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 DA D T VP + S +S ++P I D + ++ + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISDDNVQTIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + + KV+ LE N + T P ++ L ++ Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862 >gi|145349915|ref|XP_001419372.1| Carbamoyl-phosphate synthase L chain [Ostreococcus lucimarinus CCE9901] gi|144579603|gb|ABO97665.1| Carbamoyl-phosphate synthase L chain [Ostreococcus lucimarinus CCE9901] Length = 1105 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G++V ++ + SV ++A KPD Sbjct: 45 SGTQACKALRAEGYEVVLVNSNPATIMTDPETASRTYVTPMSPESVEQIIAREKPDALLP 104 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + IL + + + A + D+ K + G+ S Sbjct: 105 TMGGQTALNLTKALAESGILAKYNVELIGAKLDAINKAEDRQLFKDAMDKIGLNTPKSGT 164 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + + P +I+P G + + + Q+LIE Sbjct: 165 AETWAQAQTIAADIGTMPLIIRPAFTLGGSGGGIAYNMAEFENIVKGGLDASATSQVLIE 224 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I +F + + + + Sbjct: 225 QSLLGWKEYELEVMRDLADNVVIVCSIENFDPMGVHTGDSITVAPAETLTDKEYQRLRDA 284 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S +P+ +V +E+N P ++ S + G+ ++ Sbjct: 285 SVAIIREIGVECGGSNVQMAVNPVDGQVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 340 Query: 290 LWM 292 + Sbjct: 341 AKL 343 Score = 40.2 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 13/174 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + P +++P + ++ + + + + +L+++Y + E+ C Sbjct: 736 AEKLGYPVMVRPSYVLGGRAMEIVGSTADLKRYINTAVEVDPERPVLVDKYLQNATEIDC 795 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAI 238 + D +V + + + S +S LP + + ++ + + Sbjct: 796 DALCDMEGNVVIGGI---MEHIEQAGVHSGDSACSLPTQTIPESALATIREWTPKLARRL 852 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 G G+ + P + +E N + T P +A G+ + L+ Sbjct: 853 GVVGLINIQYAVTP-DGTPYIIEANPRASRT----VPFVAKAIGHPLAKYASLV 901 >gi|319649635|ref|ZP_08003791.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. 2_A_57_CT2] gi|317398797|gb|EFV79479.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. 2_A_57_CT2] Length = 1070 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACIALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDALVPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +EI T + A D R+ VP I Sbjct: 90 LGGQTGLNLAVELAESGVLEECGVEILGTKLSAIQKAEDRDLFRNLMNELGEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + + Q L+E+ Sbjct: 150 HNLEEAYKFVNRIGYPVIVRPAFTLGGTGGGICHDEEELIEIVTSGLKNSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQLLRNTS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A DK +P + L + Sbjct: 640 INLAADLVKRGVKILGTSLENVDRAEDRDKFEQALAELGIPMPKGKTALSVEQAVAVAGE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ K+ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYKEAELLHYMENAVKVNPEHPVLIDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P I I ++ + +G G+ Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSIAVYPPQNISEAIKDKLVEYTEKMAKGLGIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +V+ LE+N P ++ ++ P Sbjct: 817 LNIQYVV--AKGEVYVLEVNPRSSRTVPFLSKITNVPMA 853 >gi|257468416|ref|ZP_05632510.1| carbamoyl phosphate synthase large subunit [Fusobacterium ulcerans ATCC 49185] gi|317062685|ref|ZP_07927170.1| carbamoyl-phosphate synthase subunit large [Fusobacterium ulcerans ATCC 49185] gi|313688361|gb|EFS25196.1| carbamoyl-phosphate synthase subunit large [Fusobacterium ulcerans ATCC 49185] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + +L KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 +++ T + + A ++ P ++ ++ + Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEELDIARPKGRAVWDVEHGIEIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I+ P +++P G+ + + ++ L S + + +LI++Y++GIEL + Sbjct: 701 EINYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + + E+ + +A+ + Sbjct: 761 CDGEDILI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEAELLEITKRIAKALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ K++ +E+N P ++ VS P Sbjct: 817 GMMNIQFI--AYENKLYVIEVNPRSSRTVPYISKVSGVP 853 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 90/303 (29%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+A +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITADFVEKVIAKERPDSILA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + ILE + + I + D+ R + Sbjct: 88 GMGGQTALNMAVELSEKGILEKYGVKVIGTPIESIKRGEDRELFREAMEKIGEPIIQSKI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + L++ + + Q+LIE+ Sbjct: 148 VENLEDGFKVAREIGYPVVVRPAYTLGGTGGGFAYNPKELEDILMKGLALSRVKQVLIEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++ Sbjct: 208 SILG--WKEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A IG G F P S + +EIN P ++ S + GY + Sbjct: 266 SAIKIVNEIGVIGGCNVQFSLHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TRL 324 >gi|330877244|gb|EGH11393.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1073 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + +LE + + + D+ R + + S G S Sbjct: 89 TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGQACPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPRGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + + P ++ + + Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ ++ + L ++ ++ +L++ + IE+ + Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + +S ++ + P +P I E++ +G G Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++ +E+N + T P ++ G S Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861 >gi|227824462|ref|ZP_03989294.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21] gi|226904961|gb|EEH90879.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + V+ +PD Sbjct: 30 GTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLNVEFLESVIQKERPDSLLAT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + IL+ + + I + + D+ + +P + Sbjct: 90 LGGQIGLNLAIELDKTGILKKYNVKLIGTQIPSIMKAEDRELFKETMEKLHQPIPQSTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + D + + ++ Q+LIE+ Sbjct: 150 ESVAAAKEFADRIGYPLIVRPAYTLGGTGGGIAHNDAELDDICTKGLQYSLIGQVLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D + + ++ ++ A Sbjct: 210 VAGWKEIEFEVIRDHADNCITVCNMENLDPVGVHTGDSIVVAPCQTLTDREVQM-LRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 IDIVRELGVEGGCNVQYALNPDSEEYIVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324 Query: 292 M--------VEDASCLR 300 + +E+A + Sbjct: 325 IAAGYTLDEIENAVTKK 341 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 89/288 (30%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G++ I D D V V+ +P+ G Sbjct: 580 ALKEEGYETIIINNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREQPEGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A ++ P ++ + + H Sbjct: 640 INLAGPLHSCGVKILGTSVDDIDRAEDRERFDEVLTEVGIPRPKGHTVFDVEGAVKAAHD 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P +++P + ++ D + + + + +L++ Y+ G E+ + Sbjct: 700 DGYPVMVRPSYVLGGRAMEIVYNDDQLRYYMANAVKASKEHPVLVDHYLMGTEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + I + + + +G+ Sbjct: 760 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPRTLSEHIIEAIIEYTNKLALTLHVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ K++ +E+N + T P ++ G S ++ Sbjct: 817 LNIQYIV--RDEKLYIIEVNPRSSRT----VPFLSKVTGISMVDVATK 858 >gi|163794417|ref|ZP_02188388.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium BAL199] gi|159180141|gb|EDP64664.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium BAL199] Length = 1089 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPEMVRRVIERERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G LE + + + A + D+ + + + + G+ S + Sbjct: 89 TMGGQTALNIARALARDGTLEEFGVELIGADLAAIEKAEDRQQFRVAMDAIGLDTPRSRM 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +F ++ L P +I+P G + + + + +++L+E+ Sbjct: 149 IGKFEEAAEALDHVGLPAIIRPSYTMGGQGGGIAYNREEFEQIVQNGLRLSPSNEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVIRDRADNCIIVCSIENIDPMGIHTGDSMTVAPALTLTDKEYQRMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVDTGGSNVQFAVDPATGRQIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 100/326 (30%), Gaps = 51/326 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL DAGF+ + D D S Sbjct: 573 IVILGGGPN-------RIGQGIEFDYCCVHAAYALSDAGFETIMVNCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL----------------LEIPYTHSGILA 86 L L + ++ G ++ I++ + I T + Sbjct: 626 RLYFEPLTIEDVIELVDGERANGEVLGVIVQFGGQTPLKLAAALEKAQIPILGTSPDAID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + I P VI+P + ++ Sbjct: 686 LAEDRERFQKLLHKLKLRQPENGTATSTEQAEKVADTIGYPVVIRPSYVLGGRAMEIVHD 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + + +LI+ + E+ + D + + + Sbjct: 746 IEGLRRYMSNAVVVSGKNPVLIDSFLRSATEIDVDAVCDGTDVFIAGVMEHIEEAGIHSG 805 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P +P I EV+R + +G G+ F +VF LE+N + Sbjct: 806 ---DSACSLPPVSLPDSIIAEVKRQTTMLAHGLGVVGLMNVQFAV--KDGEVFILEVNPR 860 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P +A G ++ Sbjct: 861 ASRT----VPFVAKATGVPIAKIAAR 882 >gi|303279222|ref|XP_003058904.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460064|gb|EEH57359.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1107 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G++V ++ + + V +L KPD Sbjct: 47 SGTQACKALRSEGYEVVLLNSNPATIMTDPETASRTYVGPMTPELVEEILKKEKPDALLP 106 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ILE + + + A + D+ K ++ G+ PS Sbjct: 107 TMGGQTALNLTKTLAETGILEKYNVELIGAKLDAINKAEDRQLFKDAMTKIGLKTPPSGT 166 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + P +I+P G + + + + + Q+LIE Sbjct: 167 ANTWEEALKIQEEIGNFPLIIRPAFTLGGSGGGIAYNMEEYENIVTGGLNASSTTQVLIE 226 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 227 KSLLGWKEYELEVMRDLADNVVIVCSIENLDPMGVHTGDSITIAPAQTLTDKEYQRLRDA 286 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S +P ++ +E+N P ++ S + G+ ++ Sbjct: 287 SVDIIREIGVECGGSNVQMAVNPEDGELMIIEMN--PRVSRSS--ALASKATGFPIAKMA 342 Query: 290 LWM 292 + Sbjct: 343 AKL 345 Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 9/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +++P + ++ D + + + + +L+++Y+ Sbjct: 737 ANNIGYPVMVRPSFVLGGRAMEIVSSDADLKRYITTAVEVDPEKPVLVDKYL-ANATELD 795 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + + + +S ++ + P I ++ + +G Sbjct: 796 VDALCDAEGNVVICGIMEHIEQAGVHSGDSACSIPPQTISEKSLAIIRDWTPKVAKRLGV 855 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 G+ + P + +V+ +E N + T P +A G+ + L+ Sbjct: 856 IGLINIQWAVTP-NDEVYIIEANPRASRT----VPFVAKAIGHPLAKYASLV 902 >gi|326790915|ref|YP_004308736.1| carbamoyl-phosphate synthase, large subunit [Clostridium lentocellum DSM 5427] gi|326541679|gb|ADZ83538.1| carbamoyl-phosphate synthase, large subunit [Clostridium lentocellum DSM 5427] Length = 1081 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 90/298 (30%), Gaps = 32/298 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 S A AL+ G + ++ D + KP Sbjct: 577 SVHAIM-ALKKKGIETIIVNNNPETVSTDFNTSDKLYFEPLTDEDFYHIYLKEKPMGVIL 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + TH + A +K P +I Sbjct: 636 QFGGQTAIKLAKFCEKMNIPVLGTHPKHMDEAEDREKFDEILEKLHIKRPKGKAIWSVEE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P +++P G+ + + + L+ + + + +LI++Y+ G E Sbjct: 696 GLKVAEELEYPVLVRPSYVLGGQGMEITYEAHQLERYLINAFDRDPENPVLIDRYLMGRE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + D + + + ++T IP I +++ + + Sbjct: 756 IEVDALSDGENILIPGIMEHLERAGIHSG---DSTTLYPSVNIPDHIKEKIITCTQMLAK 812 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-LLWMV 293 + G+ ++ ++ +E+N + T P ++ G +L + M+ Sbjct: 813 ELKVLGMINIQYI--EYKNDLYIIEVNPRSSRT----VPYISKVTGVPIIDLAVEAML 864 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A+ + G +V ++ + + V+A +PD Sbjct: 29 SGTQACQAIREEGIEVVLVNSNPATIMTDEEIADKIYIEPLTVEFLEKVIAKERPDSVLA 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G SA+ + R + Sbjct: 89 GVGGQTALNLAVELNDKGILEKYNVRVIGTQISAIKEGEDRELFRALMKRINQPCIESEI 148 Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T+++ I P V++P G + + ++ + + Q+LIE+ Sbjct: 149 VETVEAAVAFSRKIGYPVVVRPAYTLGGTGGGIAETEEELREICASGLHLSRVHQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + + +S V P++ D Y+ ++R Sbjct: 209 CIKG--WKEIEYEVMRDNYGTAITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRR 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + A RG P S + +EIN P ++ S + GY + Sbjct: 267 ASLDIISACDIRGGCNVQLALHPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIARVS 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 >gi|262282329|ref|ZP_06060097.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp. 2_1_36FAA] gi|262261620|gb|EEY80318.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp. 2_1_36FAA] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFADGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAGNGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D L + + + +S + P + + + + C G Sbjct: 759 SDGRLVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|328675203|gb|AEB27878.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida 3523] Length = 1094 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYGVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + N++ G + + I T + Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + ++ Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ +LI+++++ V A + + Sbjct: 746 QDELDTYIRTNAKCILEGPILIDKFLEN-ATELDVDALADGGERVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + +++ +E+N + Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELYVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|291528553|emb|CBK94139.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale M104/1] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD A G + L + + + + D+ ++ Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+P + + I P +++P G+ + D I + Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 ++ +L+++Y+ G E+ + D + + + + S + Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + + QA+ G+ F+ + ++ +E+N + T P + Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845 Query: 278 AAYAGYSFRELLLWMV 293 + G +L ++ Sbjct: 846 SKVTGIPIVDLAARII 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + S+ ++ KPD Sbjct: 30 GTQACRSLKEEGVEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + +++ T + + A + + + Sbjct: 90 LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + +Q + L + ++L+E+ Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|291523985|emb|CBK89572.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale DSM 17629] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD A G + L + + + + D+ ++ Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+P + + I P +++P G+ + D I + Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 ++ +L+++Y+ G E+ + D + + + + S + Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + + QA+ G+ F+ + ++ +E+N + T P + Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845 Query: 278 AAYAGYSFRELLLWMV 293 + G +L ++ Sbjct: 846 SKVTGIPIVDLAARII 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + S+ ++ KPD Sbjct: 30 GTQACRSLKEEGVEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + +++ T + + A + + + Sbjct: 90 LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + +Q + L + ++L+E+ Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|238923139|ref|YP_002936652.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale ATCC 33656] gi|259585679|sp|C4ZEK2|CARB_EUBR3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|238874811|gb|ACR74518.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale ATCC 33656] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KPD A G + L + + + + D+ ++ Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + G+P + + I P +++P G+ + D I + Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 ++ +L+++Y+ G E+ + D + + + + S + Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + + QA+ G+ F+ + ++ +E+N + T P + Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845 Query: 278 AAYAGYSFRELLLWMV 293 + G +L ++ Sbjct: 846 SKVTGIPIVDLAARII 861 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + S+ ++ KPD Sbjct: 30 GTQACRSLKEEGIEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + +++ T + + A + + + Sbjct: 90 LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + +Q + L + ++L+E+ Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|166711938|ref|ZP_02243145.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1080 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|332361057|gb|EGJ38861.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1056] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVMILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIAEYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|323351423|ref|ZP_08087079.1| exopolyphosphatase [Streptococcus sanguinis VMC66] gi|322122647|gb|EFX94358.1| exopolyphosphatase [Streptococcus sanguinis VMC66] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + ++ + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEAALRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|171912641|ref|ZP_02928111.1| Allophanate hydrolase subunit 2 [Verrucomicrobium spinosum DSM 4136] Length = 1204 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + D + + + +++ Sbjct: 149 AQGIGYPVMLKSTAGGGGIGMRVCENDSDLRAQFESVQRLSMANFKDSGLFLEKFVRHAR 208 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + E V ++ + PA + E+ A +A+ Sbjct: 209 HIEVQIFGDGEGRVLALGERDCSVQRRNQKVIEETPAPHLSSEGRAELLACAERLGKAVN 268 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D SRK ++LE+N + G+T G +L+ WMV Sbjct: 269 YRSAGTVEFVYDADSRKFYFLEVNTRLQVEHGVTE--------EVLGI---DLVEWMVRL 317 Query: 296 ASCL 299 A+ Sbjct: 318 AAGD 321 >gi|58617380|ref|YP_196579.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium str. Gardel] gi|58416992|emb|CAI28105.1| Carbamoyl-phosphate synthase large chain [Ehrlichia ruminantium str. Gardel] Length = 1075 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L+ G+++ I+ + + + ++ KP Sbjct: 29 SGTQACKTLKKEGYRIILINSNPATIMTDPEIADSTYIEPITTHILEKIIIKEKPSAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + LE + + A + D+ +Q + G SI+ Sbjct: 89 TVGGQTALNAAISLCNAGILEQYNVKLIGATKEAIKKAEDRNLFRQAMDRIGAKYPKSII 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P +G + + ++ + + ++ +++ Sbjct: 149 IRSIDEINHALEYIGLPAIIRPSFTLGGIGGGISYNKEEFQKNIEYGLNISPISEVQVDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + + + + ++ K Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + GY ++ Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNNDILVIEMN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 12/225 (5%) Query: 72 LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129 L I + + L+ D+M+ +Q++ + P+I N + + P + Sbjct: 659 LHQKNIRILGTSFDSIDLAEDRMKFQQLLMQLNIKQPPNITCNSKDELLKNIETLDFPIL 718 Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 ++P G I+ + + + + ++HG LL + + +E+ + D Sbjct: 719 VRPSYVLGGQSMSIIRDNNALLNYLTIHKNIFDHGSLLLDQFLTNAVEVDVDAICDGKDT 778 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + +S ++ + + + + A+ +G + Sbjct: 779 YIAGIMEHIEEAG---VHSGDSACSLPAYTLTKETIDTIASYTKKISLALNVQGFINIQY 835 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +++ LE+N + T P +A G ++ ++ Sbjct: 836 AI--HNNEIYILEVNPRASRT----VPFIAKATGIPIAKIATEIL 874 >gi|332366727|gb|EGJ44468.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1059] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|332359676|gb|EGJ37493.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK355] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|325687612|gb|EGD29633.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK72] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|324992755|gb|EGC24675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK405] gi|324994599|gb|EGC26512.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK678] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|324991001|gb|EGC22935.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK353] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVAGLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|311108161|ref|YP_003981014.1| carbamoyl-phosphate synthase large chain [Achromobacter xylosoxidans A8] gi|310762850|gb|ADP18299.1| carbamoyl-phosphate synthase large chain [Achromobacter xylosoxidans A8] Length = 1079 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPRDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL D G++ + D D S Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALRDDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAAEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ + E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868 >gi|125718157|ref|YP_001035290.1| carbamoyl phosphate synthase large subunit [Streptococcus sanguinis SK36] gi|167006451|sp|A3CNI5|CARB_STRSV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|125498074|gb|ABN44740.1| Carbamoyl-phosphate synthase large chain, putative [Streptococcus sanguinis SK36] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|325694685|gb|EGD36592.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK150] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 79/267 (29%), Gaps = 12/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ +P G + ++I T L Sbjct: 606 DKLYFEPLTF---EDVMNVIELEQPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D P + +++ I P +++P + +++ Sbjct: 663 RAEDRDLFEQALKELDIQQPPGQTATNEEEAVEAARKIGFPVLVRPSYVLGGRAMEIVEN 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L++ Y+ G E + D + + + + Sbjct: 723 EADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVLIPGIMEHIERAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + + + + C G+ F+ +V+ +E+N + Sbjct: 780 SGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFVI--KDEQVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ ++ ++ Sbjct: 838 SRT----VPFLSKVTDIPMAQVATRLI 860 >gi|317405988|gb|EFV86266.1| carbamoyl-phosphate synthase large subunit [Achromobacter xylosoxidans C54] Length = 1080 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL D G++ + D D S Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALRDDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDIAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAAEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ + E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + D+ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSADVIAEIKRQTSMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868 >gi|257466976|ref|ZP_05631287.1| carbamoyl phosphate synthase large subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315918117|ref|ZP_07914357.1| carbamoyl-phosphate synthase subunit large [Fusobacterium gonidiaformans ATCC 25563] gi|313691992|gb|EFS28827.1| carbamoyl-phosphate synthase subunit large [Fusobacterium gonidiaformans ATCC 25563] Length = 1068 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + ++ KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 ++I T + + A +K P + + + Sbjct: 641 AIKLAKDLEKRNIKILGTSAEKIDEAEDREKFEEMMESLDIKRPRGRASWDVEHGIAIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P G+ + + ++ L S S + +LI++Y++GIEL + Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEVNLVKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + +E+ + +A+ + Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYKGTEEEILDITRKIARALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ F+ +++ +E+N + T P ++ +G E+ M Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRT----VPYISKISGLPVIEIASRM 861 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+ +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + ILE I + I + D+ R + Sbjct: 88 GMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILTSHV 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G Q + LL+ S + Q+LIE+ Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++R Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + IG G F P S + +EIN P ++ S + GY + Sbjct: 266 ASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TKL 324 >gi|217968162|ref|YP_002353668.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum DSM 6724] gi|217337261|gb|ACK43054.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum DSM 6724] Length = 1054 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + ++ KPD Sbjct: 26 SGTQACRALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVIERIIEKEKPDGIIA 85 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ ILE IP + + + +++ D+ R + V Sbjct: 86 TLGGQTGLNLAMELASIGILEKYGIPLLGASLESISMAEDRELFRKRMEEIGEPVLPSVV 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +I P VI+P G +++ + LL+S + Q L+E+ Sbjct: 146 VRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVESVEEFEKALLRSLKLSPVSQALLEK 205 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + ++ Y+ ++ Sbjct: 206 SVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHTGDSIVVAPTQTLNDIE-YQMLRTA 264 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G + +P R+ + +E+N P ++ S + G+ L Sbjct: 265 SLKIITALKIEGGCNIQYALNPNKREYYVIEVN--PRVSRSS--ALASKATGFPIARLTA 320 Query: 291 WM 292 + Sbjct: 321 KI 322 Score = 43.7 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 19/261 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ +P + G + + T + A +K Sbjct: 614 SEDVTNIMEQEEPLGFLSQFGGQTAINLSKNLEKRGFYLLGTSQKSIDLAEDREKFDRFL 673 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + P I + I P +++P +I++ + + + Sbjct: 674 RKNKIPRPKGFYIRNINEAKEVIEEIGFPVLLRPSYVLGGRAMIIVYNMEDLESYFERKD 733 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 L ++Q++ G E ++ D P + S +ST V P Sbjct: 734 IIL---PLWMDQFIVGKEAEVDLLCDGKEVFI----PGIMEHIERAGIHSGDSTTVFPHY 786 Query: 219 I-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVS 272 ++ ++ + + +G+ ++ +V+ LE N P ++ Sbjct: 787 TLSQEVVDKIVDYSTKIALGLEVKGLLNIQYVISSKDEEVYVLEANPRASRTIPYLSKAL 846 Query: 273 IFPEMAAYA-----GYSFREL 288 P + YA GY+ REL Sbjct: 847 KLP-LVKYATKIALGYTLREL 866 >gi|71279813|ref|YP_270132.1| carbamoyl phosphate synthase large subunit [Colwellia psychrerythraea 34H] gi|71145553|gb|AAZ26026.1| carbamoyl-phosphate synthase, large subunit [Colwellia psychrerythraea 34H] Length = 1071 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +P Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPCAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L+ + + A + D+ R + + + G+ + + Sbjct: 89 TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLDTPNAEI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ ++ P +I+P G + + + + +LLI++ Sbjct: 149 VHTIEEAHAASKVLGFPCIIRPSFTMGGTGGGIAYNIEEFDEICTRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGICPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 36/294 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESITFEDVLEIVRIEKPKGVIVQYGGQTP 646 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P ++ M Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTSLEEAMAKAEG 706 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + ++ S ++ +L++ ++D V Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDLDDLRRYMTEAVSVSNDSPVLLDHFLDD---AIEVDI 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D D T++ + + + S +S LPA +I +++ +G G Sbjct: 764 DVVCDGTDVVIGGIMQHIEQAGVHSGDSACSLPAYSLSQEIQDVMRKQVTDLAFELGVIG 823 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287 + + +V+ +E+N P ++ + P A AG S +E Sbjct: 824 LMNTQMAV--KDNEVYIIEVNPRAARTIPFVSKATSVPLAKVGARVMAGKSLKE 875 >gi|327474346|gb|EGF19752.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK408] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSKKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|327462491|gb|EGF08815.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK1] Length = 1059 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDIIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|320333552|ref|YP_004170263.1| carbamoyl-phosphate synthase large subunit [Deinococcus maricopensis DSM 21211] gi|319754841|gb|ADV66598.1| carbamoyl-phosphate synthase, large subunit [Deinococcus maricopensis DSM 21211] Length = 1028 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V + D D V V+A KPD Sbjct: 29 SGTQALKALRREGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVERVIALEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G + L + G A+ + R + + Sbjct: 89 TLGGQTALNLAMDLHERGTLEQYNVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ Q + P VI+P G + + + +L+E+ Sbjct: 149 VHSMDEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLRITEGGLRDSPVTSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + ++ + + Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDQS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVATGGSNIQFAVNPQNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 42.6 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 35/291 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ AG++ + D D V ++ H +P L G Sbjct: 580 ALQQAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIVDHERPVGVIVQLGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + +A + P + Sbjct: 640 LKLARRLEDAGAPIIGTSPTTIHTAEDRASFNALCERLGIPQPKGKVAENAEQALQLAEA 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGV 181 + P + +P + ++ + L + + G ++ +Q+++G EL Sbjct: 700 LGFPLMARPSYVLGGRAMRTVRSMDELRTYLTEVYAAVEGQPSILLDQFLEGALELDVDT 759 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S ++ + P + ++ EV+ + +G R Sbjct: 760 LCDGEHAVVAGVMEHIEAAG---VHSGDSACILPPVHLSPELLAEVKATTERLARELGVR 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 G+ + + LE N + T P ++ G + L+ Sbjct: 817 GLMNVQWAV--KDGVPYILEANPRASRT----VPFVSKAIGVPLAKYAALI 861 >gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] Length = 1355 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 96/292 (32%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------G 60 C AL+ AG++V + D D S L L P+ V+H G Sbjct: 575 CVWALKKAGYEVVIVNNNPETVSTDFDTSDRLYFEPLTPEDVMGVIHTEKPYGVVVAFGG 634 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + T + A ++ +++ ++ Sbjct: 635 QTAIKLAKFLDDQGINVLGTSFDSIDMAEDRERFDELLEKHHVKRAEGFTVMTTEEALEV 694 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + I P +++P +I+ D I + + + +LI++Y+ G EL Sbjct: 695 ANRIGYPVLMRPSYVLGGQNMIIAFNDADIKEYMAIILAQEIENPILIDKYLMGTELEVD 754 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239 + D + P + S +S V PA D+ + + ++ Sbjct: 755 AICDGEDILI----PGIMEHIERTGVHSGDSIAVYPAWNINDVMTDKIIESSRNLAISLN 810 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ +L +++ +E+N + T P ++ G +L Sbjct: 811 TKGLVNIQYLI--YHNELYVIEVNPRSSRT----IPYISKVTGVPMVDLATR 856 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL + G +V ++ + +V ++ KPD + Sbjct: 30 GTQACRALREEGLEVVLVNSNPATIMTDNAMADKIYIEPLTLETVKRIIKKEKPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G +Q LE + + + D+ K + S G P PS + Sbjct: 90 LGGQTGLTLSMQLAKEGFLEENGVTLLGANPETIDKAEDRQMFKDTMESIGQPCIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +I+P G +++ ++ + + Q+L+E+ Sbjct: 150 NTVEGAVDFANEIGYPLIIRPAFTLGGSGGGIVENEEELREITENGLRLSPITQVLVEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + S +F ++ + + Y+ ++ A Sbjct: 210 VSGWKEIEFEVIRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADQEYQMLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LDIINVLKVEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|30249625|ref|NP_841695.1| xarbamoyl-phosphate synthase [Nitrosomonas europaea ATCC 19718] gi|30138988|emb|CAD85572.1| Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain [Nitrosomonas europaea ATCC 19718] Length = 1065 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V I+ + + V ++ +PD Sbjct: 29 SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQAVEKIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +LE + + A + D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDKAEDREKFKQAMTRIGLQSARSAM 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M +Q +I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEAMQAQAMIGYPAIIRPSFTLGGSGGGIAYNREEFIEICERGLEASPTRELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVIGWKEYEMEVIRDKQDNCIIVCAIENVDPMGVHTGDSITVAPAQTLTDKEYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAINPENGNMLVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + A KP G Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDVSDRLYFEPLTLEDVLEIAAVEKPAGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ A ++ ++ P + + + Sbjct: 642 LKLARALETNGVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPSNFTARTAETALAAADK 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++ Y + IE+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEARDLERYIQEAVKVSNDSPVLLDHYLNNAIEVDVDAI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S ++ + P + + +E++R A+ G Sbjct: 762 SDGKAVLIGGIMEHIEQAG---VHSGDSACSLPPFSLSASLQEELRRQTEAMAYALNVNG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F V+ LE+N + T P ++ G ++ Sbjct: 819 LMNIQFAI--QDDTVYVLEVNPRASRTA----PFVSKATGLQLAKIAAR 861 >gi|197118283|ref|YP_002138710.1| carbamoyl-phosphate synthase large subunit lipoprotein [Geobacter bemidjiensis Bem] gi|197087643|gb|ACH38914.1| carbamoyl-phosphate synthase, large subunit lipoprotein, glutamine-dependent [Geobacter bemidjiensis Bem] Length = 1082 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V LE + + + A + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVRIGLDVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M+ + P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYQEAMEVIKFVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + + + Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + G++ + D D S L L + N++ G Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + + Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAER 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I +I +E++R + + +G Sbjct: 778 CDGQVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISKEIVEEIRRQTKMMALELNVKG 834 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ +E+N + T P ++ G ++ Sbjct: 835 LMNVQFAV--KGNDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877 >gi|317129273|ref|YP_004095555.1| carbamoyl-phosphate synthase, large subunit [Bacillus cellulosilyticus DSM 2522] gi|315474221|gb|ADU30824.1| carbamoyl-phosphate synthase, large subunit [Bacillus cellulosilyticus DSM 2522] Length = 1070 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL + G++V I+ D SV V+ +PD Sbjct: 30 GTQACQALMEEGYEVILINSNPATIMTDESVADRVYIEPLTVDFVSRVIRQEQPDGILAT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111 L G G + IL+ + + + A + D+ + + VP + Sbjct: 90 LGGQTGLNLAVELSESGILDEYGVELLGTNLEAIQKAEDREMFRSLMNELNEPVPPSDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M I P +++P G ++ ++ + +L + +Q LIE+ Sbjct: 150 QSLDGAMKFVEEIGYPVIVRPAYTLGGTGGGLVYNEEQLREIVLGGLHQSPVNQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDANNQAIVVCNMENIDPVGIHTGDSIVVAPSQTMTDREYQILRNSS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G +G F DP S F +E+N P ++ S + GY +L Sbjct: 269 LKIIRALGIQGGCNVQFALDPDSENYFIIEVN--PRVSRSS--ALASKATGYPIAKLSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ I+ + V V+ P G Sbjct: 579 KAIQEAGYEAIIINNNPETVSTDFQISDKLYFEPLTVEDVMHVILQENPIGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + +++ T + A + DK + P + + + Sbjct: 639 ALNLAADLEARGVKLLGTSLENMDRAENRDKFEQTLMQLEIPQPEGKTATSVNEAVTIAN 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +Q + + ++ N +LI++Y+ G E+ + Sbjct: 699 GIGYPVLVRPSYVLGGRAMEIVYNEQDLLKYMDRAVKVNEKHPVLIDRYLTGKEIEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241 D V P + S +S V P I + +++ + Sbjct: 759 SDGETVVI----PGVMEHIERAGVHSGDSIAVYPSQNISHQLKQQLIDYTIRLARGFNII 814 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +++ LE+N + T P ++ G + + + Sbjct: 815 GLLNIQFVIHR--DEIYVLEVNPRSSRT----VPFLSKITGVNMANIATKAI 860 >gi|257095280|ref|YP_003168921.1| carbamoyl-phosphate synthase large subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047804|gb|ACV36992.1| carbamoyl-phosphate synthase, large subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1068 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + DV + V ++A +PD Sbjct: 29 SGAQACKALLEEGYRVILVNSNPATIMTDPEMADVTYIEPITWKVVEKIIARERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110 + G D +LE + + A + D+ + K ++ G+ + Sbjct: 89 TMGGQTALNCALDLARHGVLEKFGVEMIGATRQAIDKAEDREKFKTAMTGIGLASARSAA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q +I P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQAMIGYPAIIRPSFTMGGSGGGIAYNQEEFVDICKRGLEASPTRELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P ++ +E+N P ++ S + G+ ++ Sbjct: 269 VAVLREIGVDTGGSNVQFAICPSDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++A KP Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPVGVIVQY 636 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + +A ++ + P + + Sbjct: 637 GGQTPLKLARDLEANGVPIIGTSPDRIDAAEDRERFQKLLQQLGLRQPANRTARTEPEAL 696 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 I P V++P + ++ + + + ++ ++ +L++++ D IE+ Sbjct: 697 RLAAEIGYPLVVRPSYVLGGRAMEIVHDPRDLERYMREAVKVSNDSPVLLDRFLNDAIEV 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + ++ E++R L + Sbjct: 757 DVDALSDGEEVLIGGVMEHIEQAG---VHSGDSACSLPPYSLSAELQDELRRQTRLMARG 813 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G+ F S VF LE+N + T P ++ G ++ Sbjct: 814 LKVCGLMNVQFAI--QSGVVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 861 >gi|325925176|ref|ZP_08186589.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans 91-118] gi|325544430|gb|EGD15800.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans 91-118] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|294666705|ref|ZP_06731941.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603530|gb|EFF46945.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|294624590|ref|ZP_06703265.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601125|gb|EFF45187.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|167627029|ref|YP_001677529.1| carbamoyl phosphate synthase large subunit [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597030|gb|ABZ87028.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1094 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G+ V + D SVG ++A +PD Sbjct: 29 SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G ILE + + + + ++ R + ++ G+ V +++ Sbjct: 89 TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P +I+P G + + + S + +++LI++ Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + I + + + + Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + K+ +E+N P ++ S + GY ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPETGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 42.2 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 37/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A +L++ G + I D D S Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625 Query: 43 GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + +++ G + + I T + Sbjct: 626 KLYFEPLMAENVLDIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P+ + P V++P + ++ Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + ++ +LI+++++ V A + + Sbjct: 746 KEELDAYIKTNAKCILEGPILIDKFLEN-ATELDVDALADGGDRVFVAGIMEHIEEAGIH 804 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + + + +EV++ + + G+ F + + ++ +E+N + Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELCVIEVNPRA 862 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292 T P +A G S + + Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884 >gi|157150233|ref|YP_001450393.1| carbamoyl phosphate synthase large subunit [Streptococcus gordonii str. Challis substr. CH1] gi|189081836|sp|A8AX83|CARB_STRGC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|157075027|gb|ABV09710.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 1059 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + + + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEGELQEIAENGLKISPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAIEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|21108068|gb|AAM36724.1| carbamoyl-phosphate synthase large chain [Xanthomonas axonopodis pv. citri str. 306] Length = 1090 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 39 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 98 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 99 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 158 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 279 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334 Query: 291 WM 292 + Sbjct: 335 KL 336 Score = 43.3 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883 >gi|78047465|ref|YP_363640.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035895|emb|CAJ23586.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.9 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ ++ + V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYGTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|161485715|ref|NP_642188.2| carbamoyl phosphate synthase large subunit [Xanthomonas axonopodis pv. citri str. 306] gi|22095491|sp|P58942|CARB_XANAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.3 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|21231291|ref|NP_637208.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768657|ref|YP_243419.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris pv. campestris str. 8004] gi|188991525|ref|YP_001903535.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris pv. campestris str. B100] gi|22095492|sp|P58943|CARB_XANCP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|21112944|gb|AAM41132.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573989|gb|AAY49399.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris pv. campestris str. 8004] gi|167733285|emb|CAP51484.1| Carbamoyl-phosphate synthase large chain [Xanthomonas campestris pv. campestris] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ +P G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNADEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F D V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNDAGDDIVYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873 >gi|325510054|gb|ADZ21690.1| carbamoyl phosphate synthase large subunit [Clostridium acetobutylicum EA 2018] Length = 1065 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A+++ G + ++ + +V ++ +PD Sbjct: 29 SGTQACKAVKEEGIETVLVNSNPATIMTDSHIADKVYIEPLTEEAVEKIIEKERPDGILA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + + + + +S + A ++ ++ VP Sbjct: 89 GFGGQTALNLAMNLNDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P +I+P G + + + + + Q+L+EQ Sbjct: 149 ATHIDECIDFVNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + ++ + + Y ++ Sbjct: 209 SVAGWKELEYEVMRDAKDNCIIVCNMENLDP-VGVHTGDSIVTAPSQTLTDKEYHMLRHS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G F +P S +E+N P ++ S + AGY ++ Sbjct: 268 ALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 104/290 (35%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG+K I D D +V ++ KP+ G Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A +K + ++ ++ Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ ++ + ++ + + +LI++Y+ G E+ + Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + T +P ++ ++ + +A+ +G+ Sbjct: 762 DGENILIPGIMEHIERTG---VHSGDSITMYPYHTLPKEVVDKLVKYTKSLAKALEVKGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++D + V+ +E+N + T P ++ G +L + ++ Sbjct: 819 MNIQYVYDGEN--VYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862 >gi|15895902|ref|NP_349251.1| carbamoyl phosphate synthase large subunit [Clostridium acetobutylicum ATCC 824] gi|22095520|sp|Q97FT3|CARB_CLOAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|15025672|gb|AAK80591.1|AE007762_1 Carbamoylphosphate synthase large subunit [Clostridium acetobutylicum ATCC 824] Length = 1065 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A+++ G + ++ + +V ++ +PD Sbjct: 29 SGTQACKAVKEEGIETVLVNSNPATIMTDSHIADKVYIEPLTEEAVEKIIEKERPDGILA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + + + + +S + A ++ ++ VP Sbjct: 89 GFGGQTALNLAMNLNDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSII 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P +I+P G + + + + + Q+L+EQ Sbjct: 149 ATHIDECIDFVNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + ++ + + Y ++ Sbjct: 209 SVAGWKELEYEVMRDAKDNCIIVCNMENLDP-VGVHTGDSIVTAPSQTLTDKEYHMLRHS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G F +P S +E+N P ++ S + AGY ++ Sbjct: 268 ALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 104/290 (35%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG+K I D D +V ++ KP+ G Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A +K + ++ ++ Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ ++ + ++ + + +LI++Y+ G E+ + Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + T +P ++ ++ + +A+ +G+ Sbjct: 762 DGENILIPGIMEHIERTG---VHSGDSITMYPYHTLPKEVVDKLVKYTKSLAKALEVKGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +++D + V+ +E+N + T P ++ G +L + ++ Sbjct: 819 MNIQYVYDGEN--VYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862 >gi|256752200|ref|ZP_05493065.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256748928|gb|EEU61967.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1072 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 94/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A +P+ Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKERPEGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A+ G F DP S K + +E+N P ++ S + GY Sbjct: 268 SIKIIKALKIEGGCNIQFALDPKSHKYYVIEVN--PRVSRSS--ALASKATGYP 317 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 14/263 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + KP + G + + ++I T + Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNRVKILGTSYESID 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + +K + P L D + P +I+P + + Sbjct: 663 ISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALKLGFPLLIRPSYVIGGQSMEKVNT 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q I + ++ + G +LI++Y+DG E+ + D + P + Sbjct: 723 LQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S + PA+ + + +A+ +G+ F V+ LE+N + Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P M+ G +L Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855 >gi|167036658|ref|YP_001664236.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115085|ref|YP_004185244.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226700941|sp|B0KBW4|CARB_THEP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|166855492|gb|ABY93900.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928176|gb|ADV78861.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1072 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 94/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G +V ++ + + V ++A +P+ Sbjct: 29 SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKERPEGILA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + + IL+ + + + + D+ + K V + Sbjct: 89 TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +I+P G + D+ + + + ++L+E+ Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D +F + + Y+ ++ Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A+ G F DP S K + +E+N P ++ S + GY Sbjct: 268 SIKIIKALKIEGGCNIQFALDPKSHKYYVIEVN--PRVSRSS--ALASKATGYP 317 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 32/286 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG K I D D V + KP + G Sbjct: 580 ALREAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDVLNIYEKEKPLGVMVMFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + + +K + P L D Sbjct: 640 INLTEGLVKNRVKILGTSYESIDISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALK 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +I+P + + Q I + ++ + G +LI++Y+DG E+ + Sbjct: 700 LGFPLLIRPSYVIGGQSMEKVNTLQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + PA+ + + +A+ +G Sbjct: 760 DGECVLI----PGIMEHIERAGVHSGDSFSIYPARNLSEREINTIIEYTERISKALNVKG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F V+ LE+N + T P M+ G +L Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855 >gi|326789392|ref|YP_004307213.1| carbamoyl-phosphate synthase, large subunit [Clostridium lentocellum DSM 5427] gi|326540156|gb|ADZ82015.1| carbamoyl-phosphate synthase, large subunit [Clostridium lentocellum DSM 5427] Length = 1068 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 99/303 (32%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G ++ + D+ + ++A +PD Sbjct: 25 SGTQACKALRKLGHQIILVNSNPATIMTDPGIADITYIEPLNAERLEEIIAKERPDWLLP 84 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + L+ + + A D++ K+ + S G+ + S Sbjct: 85 NLGGQSGLNLCSELNQLGILKKYNVEVIGVQVDAIERGEDRVEFKKTMDSLGIEMARSEV 144 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 145 AYTVEEALAIAEQLGYPVVLRPAYTMGGAGGGLVYNTDELKTVCARGLQASLVGQVLVEE 204 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I D+ KE+QR Sbjct: 205 SILGWEELELEVVRDAKGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEDVQKELQRQ 263 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ +AI G + F + ++ +EIN + T S + G+ L+ Sbjct: 264 AYKIVEAIEVIGGTNVQFARHTETGRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 318 Query: 291 WMV 293 M+ Sbjct: 319 AML 321 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 91/294 (30%), Gaps = 31/294 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 A+AL++ GF+ + D D V + KP G Sbjct: 574 AATALKELGFETIMVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPLGVIAQFGG 633 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + A D R+ +P + + Sbjct: 634 QTPLNLAADLKKAGVNILGTSPETIDFAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAI 693 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P G+ V+ +S+ + + + +LI++++ Sbjct: 694 AKRIGYPVMVRPSYVLGGRGMEVVHDAESLEVYMKAAVGVTPDRPILIDRFL---HNAME 750 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239 DA D + VP + S +S +LP+ + ++ + +G Sbjct: 751 CEADAISDGENVFVPAVMEHIELAGIHSGDSACILPSLNISEENVAIIKDYTKRIAKEMG 810 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 RG+ + KV+ LE N + T P ++ L ++ Sbjct: 811 VRGLMNMQYAI--EDNKVYVLEANPRASRT----VPLVSKVCNVQMVRLATEII 858 >gi|255020831|ref|ZP_05292887.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus ATCC 51756] gi|254969622|gb|EET27128.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus ATCC 51756] Length = 1076 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V + D D ++V ++ +PD Sbjct: 29 SGVQACKALREEGCRVILVNSNPATIMTDPDTADAVYIEPVEWQTVAKIIERERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G D + ILE + + I A + D+ + V Sbjct: 89 TMGGQTALNCALDLHREGILERFGVELIGASIEAIQEAEDRGRFKRAMEEIGLEVARSAF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +I+P G + + + + ++LIE+ Sbjct: 149 AHTLDEARAIAEDVGFPVIIRPSYTLGGSGGGIAYNREEFEDIAARGLEASPSHEILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEFEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDREYQVMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLRRIGVDTGGSNVQFALNPRNGRMLVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 95/321 (29%), Gaps = 45/321 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + +L GG + G+ A AL GF+ + D D Sbjct: 560 IVILGGGPN-------RIGQGIEFDYCCVHAAMALRTDGFETIMVNCNPETVSTDYDTSD 612 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++A KP+ G + I T + A Sbjct: 613 RLYFEPLTLEDVLEIVALEKPEGVIVQFGGQTPLKLANDLESAGVPIIGTSPDSIDLAED 672 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + P V++P + ++ ++ + Sbjct: 673 RERFQQLITRLGLRQPENAIARSADEALQLARQLGYPLVVRPSYVLGGRAMRIVYSEEDL 732 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 ++++ + +L++++++ V + + + S Sbjct: 733 ARYMVEAVRVSEDQPILLDRFLNDALEVDVDAVADGKQVVVAGIMEHIEQAGVHSGDSAC 792 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270 P + I E++R A QA+G G+ F +++ LE+N + T Sbjct: 793 CLP--PYSLAQPIQDELRRQAECLGQALGVIGLMNCQFAV--QEDRIYVLEVNPRASRT- 847 Query: 271 VSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 ---VPFVSKACGVPLAKIAAR 865 >gi|138894347|ref|YP_001124800.1| carbamoyl phosphate synthase large subunit [Geobacillus thermodenitrificans NG80-2] gi|134265860|gb|ABO66055.1| Carbamoylphosphate synthetase heavy subunit [Geobacillus thermodenitrificans NG80-2] Length = 1042 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 41/311 (13%) Query: 18 SGKACASALEDAGFKVSQI----------DVDRS-----------VGLVLAHLKPDLAFN 56 SG AL++ G++V + DV + ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 VTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMKQFIALVEKGLAESPIRQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGVHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279 A A+G G F DP S++ + +E+N P ++ S +P A Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSSALASKATGYPIARIAAKL 325 Query: 280 YAGYSFRELLL 290 GY+ EL+ Sbjct: 326 AVGYTLAELIN 336 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ I+ + SV V+ + Sbjct: 578 SVHSVF-ALQKEGYETIMINNNPETVSTDFAIADRLYFEPLTLESVLDVIEAEQIQHVIV 636 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + I+ D+ Sbjct: 637 QFGGQTAINLVKGLEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +++P G+ +I+ + + + Q +LI+ Y+DG E Sbjct: 697 LVAKAAEIGYPVLLRPSYVIGGRGMFIIRSEAQLAALIEQGELTY---PILIDAYLDGKE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAH 235 ++ D + + +P + + S +S LPA+ + + + A Sbjct: 754 AEADIVTDGTDIL----LPTIIEHVEKAGVHSGDSYAWLPAQTLTEEERANIVDYARRIA 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G +GI ++ V+ LE+N + T P ++ G ++ ++ Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861 >gi|119478512|ref|ZP_01618474.1| carbamoyl-phosphate synthase large subunit [marine gamma proteobacterium HTCC2143] gi|119448493|gb|EAW29741.1| carbamoyl-phosphate synthase large subunit [marine gamma proteobacterium HTCC2143] Length = 1075 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + +V ++ KPD Sbjct: 29 SGAQACKALREEGIRVILVNSNPATIMTDPAMADATYIEPVEWQTVARIIEVEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D +LE + + A + D+ + + G+ S Sbjct: 89 TMGGQTALNCALDLDRHGVLEKHGVEMIGASKEAIDKAEDRDLFDKAMKRIGLECPRSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 Q + P +I+P G + + + + +LLI++ Sbjct: 149 AHSMEEAFQVQSQLGFPCIIRPSFTMGGSGGGIAYNKEEFAEICERGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + + +E+N P ++ S + G+ + Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRFVIIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/294 (10%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHKEKPKGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + A ++ + P ++ + Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQHMIQKLGLKQPPNTTVRSTDEAI 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 + I P V++P + ++ + + + ++ ++ +L++ +++ +E+ Sbjct: 702 AAAASIGYPLVVRPSYVLGGRAMEIVYDEDELLRYMKEAVQASNESPVLLDHFLNAAVEM 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + ++ + P + +++ + Sbjct: 762 DVDAVSDGKDVVIGAIMQHIEQAGIHSG---DSACSLPPYSLSAAQQDKMREQVKIMAIE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ ++F +E+N + T P ++ G S ++ Sbjct: 819 LGVCGLMNVQ--LAEQDGEIFIIEVNPRASRT----VPFVSKCIGVSLAKIAAR 866 >gi|50120847|ref|YP_050014.1| putative allophanate hydrolase [Pectobacterium atrosepticum SCRI1043] gi|49611373|emb|CAG74820.1| putative allophanate hydrolase [Pectobacterium atrosepticum SCRI1043] Length = 1200 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 16/186 (8%) Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P ++K GG +G+ V + + +++ Sbjct: 145 CAAAEIGYPVMLKSTAGGGGIGMRVCYSATELSEAFETVKRLGQNNFSDAGVFIEKYIER 204 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237 + + V ++ + PA D + + A QA Sbjct: 205 ARHLEVQIFGDGQGEVLALGVRDCSVQRRNQKVIEETPAPNLPDGVADALCSAAISLAQA 264 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + R +F++D + + ++LE+N + G+T ++ G +L+ WM+ Sbjct: 265 VNYRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMI 313 Query: 294 EDASCL 299 E A+ Sbjct: 314 ELAAGD 319 >gi|308193610|gb|ADO16336.1| vancomycin resistance protein A [Enterococcus faecium] Length = 225 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 9/205 (4%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 D+AF+ LHG GEDG +Q + EL IP+ I +SA+ MDK + V + G+ Sbjct: 23 DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 82 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++N+ + P +KP + GSS G+ + + + S+ + ++LIEQ Sbjct: 83 VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 140 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS-------THVLPAKIPLDIY 224 V G E+ C V+G+++ V Y + + +PA + + Sbjct: 141 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVPADLSAEER 200 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFL 249 +Q A ++A+GCRG++R D Sbjct: 201 GRIQETAKKIYKALGCRGLARVDMF 225 >gi|150400899|ref|YP_001324665.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus Nankai-3] gi|150013602|gb|ABR56053.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus Nankai-3] Length = 1061 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + V ++ +PD Sbjct: 29 SGSQACKALKELGYEIVLVNSNPATIMTDPEMADEIYIEPLVPEVVEKIIEKEQPDAILP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + V + IL+ + + + A + D+ K+ GV V S Sbjct: 89 TLGGQTALNLAVELADKGILDKYGVELIGAKLDAIRKAEDRELFKEACKKVGVDVLKSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P V++P G V + + + ++ +Q+LIE+ Sbjct: 149 AYTVEESLSIAEKLGYPVVVRPAFTLGGTGGGVAFNPEELKSIASKGLEYSLKNQILIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SIIGWKEYEYEVIRDLNDNVIIVCTIENIDPMGIHTGDSITVAPTQTLSDEEYQLLRDYS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + GY ++ Sbjct: 269 IKIIREIGVETGGSNIQFAVNPENGRIVAIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 96/290 (33%), Gaps = 29/290 (10%) Query: 23 ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGED 65 +L++ GF+ + D D + L L P+ N++ G Sbjct: 583 IKSLKEEGFETIMVNCNPETVSTDFDLADKLYFEPLYPEDVLNIIEKENPYGVVIQVGGQ 642 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123 + + + + + L D+ + +++ + P+ +V + Sbjct: 643 TPLNLSKYISDNMIVGTPKESIDLVEDREKFSNILNELKILQPPNGIVFDEKTAVEVAEK 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + ++ ++ + + ++ + +LI+++ D IE+ + Sbjct: 703 IGYPVLVRPSYVIGGRAMHIVYNNEELKKYMKEAVMVSPELPILIDKFLEDAIEVDVDAI 762 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + S+ + L+I K+ + L + G Sbjct: 763 CDGEDVFIGGIMEHIEEAGIHSGDSACVIPTQTLSNETLNIIKDYTKKLSLKLKIKGL-- 820 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + V+ LE N + T P ++ G S ++ + Sbjct: 821 ---INIQYAIKDNTVYVLEANPRASRT----IPYLSKAIGISLAKIAAKI 863 >gi|260437973|ref|ZP_05791789.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus DSM 2876] gi|292809599|gb|EFF68804.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus DSM 2876] Length = 1065 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + +S+ ++ KPD Sbjct: 30 GTQACRSLKEEGMEVVLVNSNPATIMTDKNIADEVYIEPLTVKSLEQIILKEKPDSILPT 89 Query: 58 LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111 L G G + + L E G A + + R + + + + + Sbjct: 90 LGGQAGLNLAMEIAETGFLEEHNVKLIGTTAETIRKAEDRLEFKTTMEKIGEPCAPSLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + K ++ + L + Q+L+E+ Sbjct: 150 ENVEDGIAFANQIGYPVVLRPAYTLGGSGGGIAKNEEELIDILSNGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIDELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A + G++ I D D V ++ PD A G Sbjct: 581 AFKAEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVESIVELEHPDGAVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + + ++ +++ + Sbjct: 641 IKLTKALMEMGVPILGTSAEDVDAAEDRELFDEILEQTGIPRAAGKTVFTTEEALEAANE 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAISDKDIVEFMEIINRQVQEHPILVDKYLMGKEIEVDAVC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P I I ++ +A+ +G Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSISQKIVDMLEDYTIKLARALHVKG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 817 LINIQFIV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861 >gi|313680221|ref|YP_004057960.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus DSM 14977] gi|313152936|gb|ADR36787.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus DSM 14977] Length = 1024 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 93/298 (31%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G++V ++ + + ++A +PD Sbjct: 29 SGTQAVKALRREGYRVVLVNSNPATIMTDPRLADATYIEPLRLDFLEKIIARERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + ++ LE + + A D+ + + + G+ V + Sbjct: 89 TLGGQTALNLAMELYEAGVLERYGVELIGANYAAIKKGEDREQFQAAMKKIGLDVPRGRM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ + + P +++P G V + ++ L + + L+E+ Sbjct: 149 VSSLEDGLAFAREVGYPVIVRPSFTLGGTGGGVAADEAALRELLGRGLRLSPAHTALVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + ++ K Sbjct: 209 SIVGWKEYELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLTDVEYQKMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 269 KDIIREIGVDTGGSNIQFAVDPKTGRLVVIEMN--PRVSRSS--ALASKATGYPIAKI 322 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 88/297 (29%), Gaps = 31/297 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 S AL++AG+ + D D V +L +PD Sbjct: 579 SAVHAVWALQEAGYTTLMVNSNPETVSTDYDTADKLYFEPLTAEDVLEILERERPDGVIV 638 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 L G I T + +A + P Sbjct: 639 QLGGQTPLKLARALEEAGQPIWGTSPASIHAAEDREAFNRLAAELGIPQPAGAVAADEPE 698 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + P +++P + V+K + + L Q + ++ Sbjct: 699 ALEHARRLGYPLMVRPSYVLGGRAMQVVKNEDELKAYLSQVYAELAARPTILLDAYLDGA 758 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + V A + +A +S ++T + P +P + + V+ + Sbjct: 759 IEIDVDALADGERVVVAGVMEH-VERAGVHSGDSATVLPPVTLPAEAVETVRDYTRKLAR 817 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELLL 290 A+ +G+ + + +V+ LE N + T P ++ G+ + L+ Sbjct: 818 ALEVKGLLNVQYAY--KDGQVYVLEANPRASRT----VPFVSKAVGHPLAKYAALIS 868 >gi|225387905|ref|ZP_03757669.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme DSM 15981] gi|225045990|gb|EEG56236.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme DSM 15981] Length = 839 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 89/290 (30%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ I D D V ++ KPD A G Sbjct: 353 AFSKEGYETVIINNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 412 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A ++ + P ++ + + Sbjct: 413 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDAILEQCDIPRPAGHTVFTAEEAKKAAND 472 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 473 LGYPVLVRPSYVLGGQGMQIAICDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 532 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + + + I + +A+ +G+ Sbjct: 533 DGTDILIPGIMQHIERTGIHSG---DSISVYPAQDITQKNVDTLVEYTEKLARALHVKGM 589 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ D V+ +E+N + T P ++ G L ++ Sbjct: 590 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 633 >gi|196248043|ref|ZP_03146745.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. G11MC16] gi|196212827|gb|EDY07584.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. G11MC16] Length = 1042 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 41/311 (13%) Query: 18 SGKACASALEDAGFKVSQI----------DVDRS-----------VGLVLAHLKPDLAFN 56 SG AL++ G++V + DV + ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 VTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFIALVEKGLAESPIRQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGVHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279 A A+G G F DP S++ + +E+N P ++ S +P A Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSSALASKATGYPIARIAAKL 325 Query: 280 YAGYSFRELLL 290 GY+ EL+ Sbjct: 326 AVGYTLAELIN 336 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ I+ + SV V+ + Sbjct: 578 SVHSVF-ALQKEGYETIMINNNPETVSTDFAIADRLYFEPLTLESVLDVIEAEQIQHVIV 636 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + I+ D+ Sbjct: 637 QFGGQTAINLVKGLEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + I P +++P G+ +I+ + + + Q +LI+ Y+DG E Sbjct: 697 LVAKAAEIGYPVLLRPSYVIGGRGMFIIRSEAQLAALIEQGELTY---PILIDAYLDGKE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAH 235 ++ D + + +P + + S +S LPA+ + + + A Sbjct: 754 AEADIVTDGTDIL----LPTIIEHVEKAGVHSGDSYAWLPAQTLTEEERANIVDYARRIA 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G +GI ++ V+ LE+N + T P ++ G ++ ++ Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861 >gi|194365589|ref|YP_002028199.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas maltophilia R551-3] gi|194348393|gb|ACF51516.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas maltophilia R551-3] Length = 1080 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL D G++V ++ + +V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T+D I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVDIVSRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGINPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P ++ + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDNLGLKQPPNRIARNDQEALLLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + +S +S + P + E++R +A+ G+ Sbjct: 767 IADAQGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQAELRRQVVELAKALNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F D ++ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAIQTSDEGDDTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873 >gi|237751022|ref|ZP_04581502.1| carbamoyl-phosphate synthase subunit large [Helicobacter bilis ATCC 43879] gi|229373467|gb|EEO23858.1| carbamoyl-phosphate synthase subunit large [Helicobacter bilis ATCC 43879] Length = 1215 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L+ G++V I D D + + ++ D Sbjct: 40 SGTQAVKTLKSLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIADIIKRESVDAILP 99 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE +E + + + +P Sbjct: 100 TMGGQTALNVAMSMYEKGMLEGIEFLGAKPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 159 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + +++LIE+ + Sbjct: 160 TEEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKAVAKNGLETSPINEILIEESL 219 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 220 LGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 279 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 280 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 335 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID +R V V+ KPD ++H + L + + + D Sbjct: 719 FEPIDFER-VRAVIEREKPDGI--IVHFGGQTPLKLANSLTKINAKIIGTSAKVIDTAED 775 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V++ G+ + + + I P +++P + ++ D + Sbjct: 776 REKFASFVNNLGLKQPQNGIAYEKEQAYSVANKIGFPVLVRPSYVLGGRAMRIVYDDDEL 835 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + +LI+++++ + D D + + + E S + Sbjct: 836 KQYMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGESVYIGGIMEHIEEAGIHSGD 892 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S LP + + + +G G+ + + +++ +E+N + T Sbjct: 893 SASSLPTINIRESMLKEIEQSTAKIALKLGVVGLMNVQYAI--YNNELYLIEVNPRASRT 950 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 951 ----VPFVSKATGLPLAKIATR 968 >gi|153004934|ref|YP_001379259.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. Fw109-5] gi|152028507|gb|ABS26275.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp. Fw109-5] Length = 1083 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSV------------GLVLAHLKPDLAFN 56 SG AL++ G+++ + D + +LA KPD+ Sbjct: 29 SGTQACKALKEEGYEIVLLNSNPATIMTDPGFADRTYVEPITPAVAEQILAREKPDVLLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + L + + + A + D+ ++ +P Sbjct: 89 TLGGQTALNLAVALAKNGALARHGVELIGAQLEAIEKAEDRLLFKAAMERVGVELPKSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + ++ + + +L E+ Sbjct: 149 ATSWEEARAIAEDIGFPIIIRPSFTMGGEGGGVAYNREEFEPLARRALTLSPTHTILCEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SIIGWKEYELEVMRDRNDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IRIIREIGVETGGSNIQFGVHPRTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 36/299 (12%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL AG++ + D D S L + + ++H G Sbjct: 589 ALSRAGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHVEKPEGLIVQYGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P Sbjct: 649 LKLAVPLHELGVPIFGTTPDAIDRAEDRERFAALIEKLGLRQPQNGVARSADEAFAVARR 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + V+ D+ + L ++ ++ +L++++ D E+ V+ Sbjct: 709 IGYPVMVRPSYVLGGRAMEVVYDDKDLDTYLREAVQASNERPVLVDRFLRDAAEVDVDVV 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + ++ + P + + E+++ + + +G G Sbjct: 769 SDGEDVVVGGVMEHIEEAGIHSG---DSACALPPFSLAPERVAEIEQQSIALAKELGVVG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE-----LLLWMVEDA 296 + F V+ LE+N + T P + G + ++ +E+A Sbjct: 826 LMNVQFAI--QGNDVYVLEVNPRASRT----VPFVGKATGLPLAKAGSLCMVGKSLEEA 878 >gi|319939245|ref|ZP_08013608.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV] gi|319811641|gb|EFW07917.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV] Length = 1059 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 81/267 (30%), Gaps = 12/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ KP G + ++I T L Sbjct: 606 DKLYFEPLTF---EDVMNVIELEKPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D + P + + + I P +++P + +++ Sbjct: 663 RAEDRDLFEQALKDLNIPQPPGQTATNEEEAVAAARKIGFPVLVRPSYVLGGRAMEIVEN 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L++ Y+ G E + D + + + + Sbjct: 723 EVDLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGRQVLIPGIMEHIERAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + + + + + + C G+ F+ KV+ +E+N + Sbjct: 780 SGDSMAVYPPQTLSVQVQQTIADYTKKLAIGLHCIGMMNIQFVI--KDEKVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ ++ ++ Sbjct: 838 SRT----VPFLSKVTNIPMAQVATQLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ E + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKEGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGVHTGDSIVFAPTQTISDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|315084349|gb|EFT56325.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein [Propionibacterium acnes HL027PA2] Length = 478 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 14/271 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ +PD G + + I T L Sbjct: 16 DKLYFEPLTF---EDVMNVVDLEQPDGVIVQFGGQTAINLAGPLSAAGVPILGTQVADLD 72 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + S + + + P +++P + ++ Sbjct: 73 RAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAEELGYPVLVRPSYVIGGRAMAIVTS 132 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L+++Y++G+E + D + + + + + Sbjct: 133 AEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAICDGTDVLIPGIMEHIERAG---VH 189 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRK--VFWLEI 262 S + P ++ + + + + + +GI F+ DP + + V+ +E Sbjct: 190 SGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKGILNIQFVVANDPATGEETVYVIEA 249 Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 N + T P ++ G S E+ ++ Sbjct: 250 NPRASRT----VPFLSKVTGVSMAEVATRII 276 >gi|253700925|ref|YP_003022114.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21] gi|251775775|gb|ACT18356.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21] Length = 1082 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V + D D + + ++ +PD Sbjct: 29 SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V LE + + + A + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVKIGLDVPRSGL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + M+ ++ P +I+P G + + + + D++L+E+ Sbjct: 149 AHNYQEAMEVIKVVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I +F + + + + Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLHIVDVEKPTGVIVQFGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V + I T + A ++ + P + + Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAER 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182 I P V++P + ++ ++ + + + +LI++++ + IE+ + Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + + ++ + P I +I +E++R + + +G Sbjct: 778 CDGQVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISKEIVEEIRRQTKMMALELNVKG 834 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F ++ +E+N + T P ++ G ++ Sbjct: 835 LMNVQFAV--KGNDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877 >gi|170079083|ref|YP_001735721.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. PCC 7002] gi|169886752|gb|ACB00466.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC 7002] Length = 1090 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V V+ +PD Sbjct: 29 SGTQSCKALREEGYEVVLVNSNPATIMTDPETADRTYVEPITPEIVAKVIEKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + LE + + + A ++ D+ K+ ++ GVPVCPS + Sbjct: 89 TMGGQTALNTAVSLAKNGTLEKFNVELIGAKLEAIEMAEDRNLFKEAMARIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + I P +I+P G + + + Q+L+E Sbjct: 149 ASTMEEAREVAIEIGSYPLIIRPAFTMGGSGGGIAYNQEEYEKICKSGLEASPVSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +PL+ +V +E+N P ++ S + G+ + Sbjct: 269 SLKIIREIGVETGGSNIQFSVNPLNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%) Query: 22 CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58 C +A L DAG++ ++ V ++ P Sbjct: 590 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPAGVIIQF 649 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------- 111 G V L + ++ + I Sbjct: 650 GGQTPLKLAVPLDNYLNAGDCPVDTKIWGTQPDAIDTAEDRERFEKILHDLEILQPANGI 709 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P + ++ D+ + + + +L+++ Sbjct: 710 ARDYKEAQKIANRVGYPVVVRPSYVLGGRAMEIVYSDEELDHYMKYAVQVEPDHPILVDK 769 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 +++ + V + + +S ++ + +P ++ ++ Sbjct: 770 FLEN-AIEVDVDALCDHTGKVVIGGIMEHIEEAGIHSGDSACSIPHTSLPDEVLSTIREW 828 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 Q + G+ + +V+ LE N + T P ++ G ++ Sbjct: 829 TVKLAQTLKVVGLMNIQYAV--KDNQVYILEANPRASRT----VPYVSKATGRPLAKI 880 >gi|169780672|ref|XP_001824800.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus oryzae RIB40] gi|238505138|ref|XP_002383798.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus flavus NRRL3357] gi|83773540|dbj|BAE63667.1| unnamed protein product [Aspergillus oryzae] gi|220689912|gb|EED46262.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus flavus NRRL3357] Length = 711 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 92/288 (31%), Gaps = 44/288 (15%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57 E++L G+ A G +V+ + D A P AFN+ Sbjct: 49 EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103 Query: 58 --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +H G E+ + + A DK +SK+++++ GVP Sbjct: 104 AKREGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 163 Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157 P I P +IK +KGG G+ + L Sbjct: 164 CVPGYHGQNQDPSFLEAEADKIKYPVLIKAIKGGGGKGMRIAHSKSEFQAQLQSAKSEAM 223 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +S+ L+ + + V D + + K + LP Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNSVALGERDCSIQRRHQKILEESPAPHLPD 283 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 D++ + + A +G G +F+FD + + F++E+N + Sbjct: 284 ATRKDLWAKARAAAEA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 327 >gi|70948370|ref|XP_743705.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56523332|emb|CAH77133.1| hypothetical protein PC000014.02.0 [Plasmodium chabaudi chabaudi] Length = 856 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 12/202 (5%) Query: 96 SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + + +I + I P +IK +GG GI ++ + I Sbjct: 212 FENNSINQDIYNKSTIHSLEECISECKRIGYPVMIKASQGGGGKGIRKVENENEIKKYYE 271 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 Q + + + + + + D+ S + Sbjct: 272 QVQNELPNSPIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGP 328 Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---G 267 P+ +P I++E+++ + + I RG ++L+D ++ K ++LE+N P G Sbjct: 329 PSIVPPHIFREMEKASIRLTKMIKYRGAGTIEYLYDQINNKYYFLELNTRLQVEHPVSEG 388 Query: 268 MTPVSIFPEMAA-YAGYSFREL 288 +T +I G + + Sbjct: 389 ITDTNIVAIQLQVAMGIPLQNI 410 >gi|332283353|ref|YP_004415264.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7] gi|330427306|gb|AEC18640.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7] Length = 1080 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 95/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ GF+ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKADGFRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + +LE + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLVHNGVLEKHGVELIGANEHAIEKAEDRQKFKQAMNDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAWEVQRRIGDEAGNSGFPVVIRPSFTMGGSGGGIAYNSEEFESICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + S+D I + + + + Sbjct: 209 NELLIEESLLGWKEFEMEVVRDSVDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL D ++ + D D S Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALRDDDYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHATEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++ + + E+ + D + + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLNNATEVDVDCIADGEVVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + +I E++R L +A+ +G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSQEIIAEIKRQTELMARALNVKGLMNVQFAI--QDGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868 >gi|325963375|ref|YP_004241281.1| carbamoyl-phosphate synthase large subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469462|gb|ADX73147.1| carbamoyl-phosphate synthase large subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 1104 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKERPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +LE + + I A L D+ + K VV CG S Sbjct: 89 TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + + + P V++P LG + + + + Q ++ ++L+E+ Sbjct: 149 IHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + + Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQRLRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|224437568|ref|ZP_03658526.1| carbamoyl phosphate synthase large subunit [Helicobacter cinaedi CCUG 18818] Length = 1232 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L+ G++V I D D + + ++ D Sbjct: 29 SGTQAVKTLKSLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIADIIKRESVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE +E + + + +P Sbjct: 89 TMGGQTALNVAMSMYEKGMLEGIEFLGAKPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + +++LIE+ + Sbjct: 149 TEEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKAVAKNGLETSPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID +R V V+ KPD ++H + L + + + D Sbjct: 752 FEPIDFER-VRAVIEREKPDGI--IVHFGGQTPLKLANSLTKINAKIIGTSAKVIDTAED 808 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V++ G+ + + + I P +++P + ++ D + Sbjct: 809 REKFASFVNNLGLKQPQNGIAYEKEQAYSVANKIGFPVLVRPSYVLGGRAMRIVYDDDEL 868 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + + + + +LI+++++ + D D + + + E S + Sbjct: 869 KQYMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGESVYIGGIMEHIEEAGIHSGD 925 Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S LP + + + +G G+ + + +++ +E+N + T Sbjct: 926 SASSLPTINIRESMLKEIEQSTAKIALKLGVVGLMNVQYAI--YNNELYLIEVNPRASRT 983 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 984 ----VPFVSKATGLPLAKIATR 1001 >gi|315221721|ref|ZP_07863637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus anginosus F0211] gi|315189208|gb|EFU22907.1| carbamoyl-phosphate synthase, large subunit [Streptococcus anginosus F0211] Length = 1059 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 80/267 (29%), Gaps = 12/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ KP G + ++I T L Sbjct: 606 DKLYFEPLTF---EDVMNVIELEKPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D + P + + + I P +++P + +++ Sbjct: 663 RAEDRDLFEQALKDLNIPQPPGQTATNEEEAVVAASKIGFPVLVRPSYVLGGRAMEIVEN 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + + + +L++ Y+ G E + D + + + + Sbjct: 723 EADLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGHQVLIPGIMEHIERAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + + + + + C G+ F+ KV+ +E+N + Sbjct: 780 SGDSMAVYPPQTLSAQVQRTIADYTKKLAIGLHCIGMMNIQFVI--KDEKVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ ++ ++ Sbjct: 838 SRT----VPFLSKVTDIPMAQVATRLI 860 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKKGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGVHTGDSIVFAPTQTISDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|255528292|ref|ZP_05395105.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] gi|255508010|gb|EET84437.1| carbamoyl-phosphate synthase, large subunit [Clostridium carboxidivorans P7] Length = 1068 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 87/278 (31%), Gaps = 33/278 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ G + ++ + V ++ KP+ G Sbjct: 583 ALKKLGIETIIVNNNPETVSTDFNVSDKLYFEPLTEEDVLNIIEKEKPNGVILQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + + A ++ P I ++ Sbjct: 643 IKLAKFLKEKNILTLGTTADQIDMAEDRERFDELLEKLGISRPKGKGIWNTEEGLEEAKK 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ + Sbjct: 703 LGFPVLVRPSYVIGGQGMEITHDEKELIYYLSNAFEKDKKNPILIDKYLMGREIEVDAIS 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + P I ++ ++ IG +G Sbjct: 763 DGKDVLI----PGIMEHLERAGVHSGDSITMYPSQNISAEMKGKILDYTKKIALEIGIKG 818 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 + F+ ++ +E+N P ++ VS P Sbjct: 819 MINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V I+ + V V+ +PD Sbjct: 29 SGTQACEALREEGIEVVLINSNPATIMTDKETADKVYLEPLTLEFVEKVIKEERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 + G G + V+ L+ + + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELYDKGILDKYNVKVIGTSIESIKEGEDRELFRNMMNRIGQPVIESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I M I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 ITDMESGMAFASKIGYPVIVRPAYTLGGTGGGIAENEEELEEILESGLQLSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAVGIEGGCNVQLALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|256825106|ref|YP_003149066.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius DSM 20547] gi|256688499|gb|ACV06301.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius DSM 20547] Length = 1118 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 46/302 (15%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L + G +V I+ + V ++A +PD Sbjct: 29 SGTQACRVLREEGLRVILINSNPATIMTDPEFADATYVEPITPEVVERIIAAERPDAVLA 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G D +LE P + + A L D+ K VV CG V S++ Sbjct: 89 TLGGQTALNCAIDLHEAGVLEKYGCPLIGANVEAIQLGEDRQLFKGVVERCGADVARSVI 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + + + ++L+E+ Sbjct: 149 CHTMDELLAGAEELGYPLVLRPSFTMGGLGSGFAHNEDELRRMGQAGLRDSPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + + K Sbjct: 209 SILGWKEYELEVMRDRADNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQKLRDVA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P +V +E+N P ++ S + G+ ++ Sbjct: 269 IKVIREVGVDTGGCNIQFAVNPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 M Sbjct: 325 KM 326 >gi|169832659|ref|YP_001694700.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae Hungary19A-6] gi|226700938|sp|B1IC65|CARB_STRPI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|168995161|gb|ACA35773.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae Hungary19A-6] Length = 1058 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVEFLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|307706740|ref|ZP_07643545.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis SK321] gi|307617825|gb|EFN96987.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis SK321] Length = 1058 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|332654271|ref|ZP_08420015.1| carbamoyl-phosphate synthase, large subunit [Ruminococcaceae bacterium D16] gi|332517357|gb|EGJ46962.1| carbamoyl-phosphate synthase, large subunit [Ruminococcaceae bacterium D16] Length = 1069 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G +V ++ D+ + V+ +PD Sbjct: 30 GTQACRALKEEGIEVVLVNSNPATIMTDKDIADHVYIEPLNIPSVTQVIEKERPDSILPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + L + + + + D+ K + S P S + Sbjct: 90 LGGQTGLNLAMALHENGTLAKYGVKLLGTSPESIRKAEDRQGFKDCMESINQPCVTSEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + S+ + + + Q+LIE+ Sbjct: 150 ESVEDAVAFAEKIGYPVIVRPAYTLGGTGGGIAYDEYSLREISDRGINLSRVGQVLIERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + + + Y+ ++ A Sbjct: 210 IAGWKEIEFEVMRDSAGNVITVCSMENIDPVGVHTGDSIVVAPT-QTLANKEYQMLRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LDIISALEIEGGCNCQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 91/288 (31%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KP A G Sbjct: 584 AFRRLGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVQNIVEQEKPWGAVVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 ++I T S + +A ++ ++ + + + + Sbjct: 644 IKLAKALTEMGVQILGTSSDGVDAAEDRERFDEILEKCGIPRAKGRTVYTTQEALKAANE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D++I + + +LI++Y+ G EL + Sbjct: 704 LGYPVLVRPSYVLGGQGMEIAYSDRNIEEFMKIINMTVQEHPILIDKYLMGRELEVDGVF 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + + + + +G G+ Sbjct: 764 DGEDILIPGIMEHVERAG---VHSGDSIAVYPPINLEDKHRELILKHTKNMAKHLGVIGL 820 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + ++ + ++ +E+N + T P ++ G +L Sbjct: 821 INAQYIL--YNDDIYVIEVNPRSSRT----IPYISKVTGVPIIDLATK 862 >gi|222618703|gb|EEE54835.1| hypothetical protein OsJ_02282 [Oryza sativa Japonica Group] Length = 1172 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++A +PD Sbjct: 99 SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIAAERPDALLP 158 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L+ L + + + A + D+ KQ + G+ PS + Sbjct: 159 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 218 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +++P G + + +H Q+L+E Sbjct: 219 GTTLEECISIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 278 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 279 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 338 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P +V +E+N P ++ S + G+ ++ Sbjct: 339 SVAIIREIGVECGGSNVQFAVNPADGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 394 Query: 290 LWM 292 + Sbjct: 395 AKL 397 >gi|328953823|ref|YP_004371157.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca acetoxidans DSM 11109] gi|328454147|gb|AEB09976.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca acetoxidans DSM 11109] Length = 1066 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 100/296 (33%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + S+ ++ +PD Sbjct: 29 SGTQACKALRQLGYEIVLVNSNPATIMTDPGMADFTYIEPLNLASMTEIIKKEQPDALLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +LE + + A D++ K+ ++ G+ + S + Sbjct: 89 NLGGQSGLNLSSELARSGVLEKYGVRIIGVEVDAIQRGEDRLAFKETMNRLGIDMPESAI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P V++P G ++ + + + S + Q+L+E+ Sbjct: 149 ATSPEEAERIADKLGYPVVVRPAYTMGGWGGGLVYNLEELRTIASRGISASLVGQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + T + I ++ + +Q+ Sbjct: 209 SVLGWEELELEVVRDAKNQMITVCFIENVDAMGVHTGDSFCTAPM-LTIAPELQQLLQKY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ +AI G + F +P + +V +EIN + T S + G+ Sbjct: 268 SYDIVEAIQVIGGTNIQFAHNPRTGRVVVIEINPR---TSRSS-ALASKATGFPIA 319 >gi|220904368|ref|YP_002479680.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868667|gb|ACL49002.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1080 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D ++ V+ +PD Sbjct: 29 SGSQAVKALKEEGYEVVLVNSNPATIMTDPQLADATYVEPIEHDTLAAVIRKERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111 L G + L E G A + + R + + + Sbjct: 89 TLGGQTALNAALGLAKSGVLAEYGVELIGAQAEVIEKAESRELFREAMEKIGLKMPASGI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ P +++P G V + + + +++IEQ Sbjct: 149 ARTIDEVRQLGNVLPFPLIVRPAFTLGGTGGGVAYNLADLEEVAGNGLAASPTSEVMIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + + Sbjct: 209 SVLGWKEIEMEVMRDVNDNCVIICSIENLDPMGVHTGDSITVAPVQTLSDAEYQQIRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFGVNPANGEIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ G + V + + I T + Sbjct: 618 DRLYFEPLTF---EDVMNIVETEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P + + + I+ P V++P + V Sbjct: 675 RAEDRERFQALIQKLGLLQPPNGTAMSLEDALAVAERIAYPVVVRPSYVLGGRAMAVAYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + +LI+++++ V DA D ++ V + E Sbjct: 735 VSELTAYFHAQVPEKPKHPILIDKFLE---HAVEVDVDAISDGKDVYVAGIMEHIEEAGI 791 Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP+ D + + + G+ F ++ LE+N + Sbjct: 792 HSGDSACVLPSYSLSYDHVALIASQTEALARELKVIGLMNIQFAI--KGDDIYILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G L Sbjct: 850 ASRTA----PFVSKATGVPLPYL 868 >gi|148543327|ref|YP_001270697.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri DSM 20016] gi|184152735|ref|YP_001841076.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri JCM 1112] gi|227364395|ref|ZP_03848487.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri MM2-3] gi|325683594|ref|ZP_08163110.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A] gi|167006441|sp|A5VHN6|CARB_LACRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|226700932|sp|B2G564|CARB_LACRJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|148530361|gb|ABQ82360.1| carbamoyl-phosphate synthase large subunit [Lactobacillus reuteri DSM 20016] gi|183224079|dbj|BAG24596.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri JCM 1112] gi|227070581|gb|EEI08912.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri MM2-3] gi|324977944|gb|EGC14895.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A] Length = 1056 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++ ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVESLSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V +E+ T + A +K + VP + Sbjct: 89 TLGGQIGLNLAVSLSETGLLDELGIELLGTKLDSIDEAEDREKFKELMNELGEPVPASQT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ H P +++P G + D + + Q LIE+ Sbjct: 149 VNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLELSPVTQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + +F + + Y+ ++ Sbjct: 209 SIAGYKEIEFEVMRDAADNVMVVCCMENFDPVGIHTGDSIVFAPNQTLSDRE-YQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPQSFQYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ I+ + V V+ +P G Sbjct: 579 KAIQRAGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L +A + + P+ + + + + Sbjct: 639 AINLAEGLAKNGVNILGTTVDDLDAAEDREVFDQVITDLNLKQPIGLTATTHSAVIKAAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + + + + L Q++S +LI+ Y++G E + Sbjct: 699 KIGYPVLVRPSYVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P DI +++ A+ C G Sbjct: 759 CDGKDVLIPGIMEHIEHAG---VHSGDSMAVYPPQHFNDDIKRQIVTATEKLAVALKCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ + +V+ LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--HNHEVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 >gi|313681206|ref|YP_004058944.1| formate-dependent phosphoribosylglycinamide formyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154066|gb|ADR32744.1| formate-dependent phosphoribosylglycinamide formyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 387 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 77/273 (28%), Gaps = 31/273 (11%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK A + G +V +D +V ++ KPD + Sbjct: 23 GKEVAIEAQRLGIEVIAVDRYNHAPAHLVANRSHVVNMQDKEAVLKLIRKEKPDYILPEI 82 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 D L A E + + + + R + Sbjct: 83 E-AISIDALFAAEAEGFCVIPNAEAVNKTMNRKNIRRFAAEDLGLKTSRYHFVSTYEDMC 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 S + P VIKP+ S G + + + + + LI + + Sbjct: 142 ASAEDVGFPCVIKPVMSSSGHGQSIARTREDLAASWEIAKEARGDASELIVEEFIRFDYE 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + T P + P ++ K Q++A + Sbjct: 202 ITLLTARNGVETVFCEPIGHI-----QKDGDYIYSWQPMEMSKKALKRSQKIAKAITDGL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268 G +G+ + +V++ E++ +P GM Sbjct: 257 GGKGLFGVELFV--AGDEVYFSEVSPRPHDTGM 287 >gi|299535895|ref|ZP_07049215.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Lysinibacillus fusiformis ZC1] gi|298728647|gb|EFI69202.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Lysinibacillus fusiformis ZC1] Length = 1065 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V I+ + V +L +PD Sbjct: 30 GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPITLDFVSRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + EI T + A D R+ VP I Sbjct: 90 LGGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + DQ + + ++ Q L+E+ Sbjct: 150 HNLDEAKRFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDAADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 89/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A + DK P + + + Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRELDIPQPQGETAVSTEEALVIGER 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + + + + +L+++Y+ G E+ + Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + P K+ + + +G G+ Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQAQKDTLVDYTTRLAKGLGIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +VF +E+N P ++ ++ P Sbjct: 817 MNIQYVISQ--NEVFVIEVNPRSSRTVPFLSKITNIPMA 853 >gi|220912753|ref|YP_002488062.1| carbamoyl phosphate synthase large subunit [Arthrobacter chlorophenolicus A6] gi|254813554|sp|B8H8U5|CARB_ARTCA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|219859631|gb|ACL39973.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter chlorophenolicus A6] Length = 1109 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKERPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +LE + + I A L D+ + K VV CG S Sbjct: 89 TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I +++ + P V++P LG + + + + Q ++ ++L+E+ Sbjct: 149 IHTMDEALEAAKDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDVS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|261403460|ref|YP_003247684.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Methanocaldococcus vulcanius M7] gi|261370453|gb|ACX73202.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Methanocaldococcus vulcanius M7] Length = 480 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G + D D + V ++ +PD Sbjct: 26 SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPKIVEKIIEKERPDAILP 85 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + +L+ I S I ++ D+ + V C + Sbjct: 86 TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEAVTKCKA 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + ++ +Q+LI++ Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205 Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + + + + + ++ LP + + Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G F + + +E+N P ++ S + GY Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314 >gi|260685111|ref|YP_003216396.1| carbamoyl phosphate synthase large subunit [Clostridium difficile CD196] gi|260688769|ref|YP_003219903.1| carbamoyl phosphate synthase large subunit [Clostridium difficile R20291] gi|306521871|ref|ZP_07408218.1| carbamoyl phosphate synthase large subunit [Clostridium difficile QCD-32g58] gi|260211274|emb|CBA66830.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Clostridium difficile CD196] gi|260214786|emb|CBE07508.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Clostridium difficile R20291] Length = 1068 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L + I D D V ++ KP+ G Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ ++I T + D R + V V Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P V++P G + ++ + L + Q+LIE+ Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + ++ + + +++ Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|126701217|ref|YP_001090114.1| carbamoyl phosphate synthase large subunit [Clostridium difficile 630] gi|115252654|emb|CAJ70497.1| Carbamoyl-phosphate synthase large chain 2 [Clostridium difficile] Length = 1068 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L + I D D V ++ KP+ G Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ ++I T + D R + V V Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P V++P G + ++ + L + Q+LIE+ Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + ++ + + +++ Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|227543792|ref|ZP_03973841.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908860|ref|ZP_07126323.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri SD2112] gi|112945585|gb|ABI26395.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri] gi|227186219|gb|EEI66290.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894267|gb|EFK87625.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri SD2112] Length = 1056 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ I+ + V V+ +P G Sbjct: 579 KAIQRAGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPVGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L +A + + P+ + + + + Sbjct: 639 AINLAEGLAKNGVNILGTTVDDLDAAEDREVFDKVITDLNLKQPIGLTATTHSAVIKAAE 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + + + + L Q++S +LI+ Y++G E + Sbjct: 699 KIGYPVLVRPSYVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P DI +++ A+ C G Sbjct: 759 CDGKDVLIPGIMEHIEHAG---VHSGDSMAVYPPQHFDDDIKQQIVTATEKLAVALKCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 I F+ +R+V+ LE+N + T P ++ G ++ ++ Sbjct: 816 IMNIQFIV--HNREVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++ ++ + S+ ++ PD Sbjct: 29 SGTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVDSLSRIIRQEYPDAILP 88 Query: 57 VLHGNFGEDGLVQAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V +E+ T + A +K + VP + Sbjct: 89 TLGGQIGLNLAVSLSKTGLLDELGIELLGTKLDSIDEAEDREKFKELMNELGEPVPASQT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ H P +++P G + D + + Q LIE+ Sbjct: 149 VNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLELSPVTQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D + +F + + Y+ ++ Sbjct: 209 SIAGYKEIEFEVMRDSADNVMVVCCMENFDPVGIHTGDSIVFAPNQTLSDRE-YQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPQSFQYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|83594218|ref|YP_427970.1| carbamoyl phosphate synthase large subunit [Rhodospirillum rubrum ATCC 11170] gi|83577132|gb|ABC23683.1| carbamoyl-phosphate synthase large subunit [Rhodospirillum rubrum ATCC 11170] Length = 1082 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALRAEGYRVILVNSNPATIMTDPETADATYIEPITPEIVEAIIERERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + + +L + + A + D++ + + G+ S Sbjct: 89 TMGGQTALNTAMALADRGVLTKYGVEMIAANKEVIAKAEDRLLFRDAMRKIGLDCPRSAL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +I+P G + + + + + Q+L+E+ Sbjct: 149 VHSIEESRQALEEIGLPVIIRPSFTLGGQGGGMAFNREEYDRIVASGLAASPVRQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQVMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 10/164 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179 + P VI+P + ++ + + ++ + + D +LI+ Y+ G IE+ Sbjct: 714 ATRVGYPVVIRPSYVLGGRAMQIVHDEAQLNDYMVNAVKVSGDDPVLIDNYLSGAIEVDV 773 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + ++ + P + E+ + + + Sbjct: 774 DAIADGETTHIAGIMQHIEEAGIHSG---DSACSLPPYSLDEATIAELTKQTEALAKGLN 830 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 RG+ F ++ LE+N + T P +A G Sbjct: 831 VRGLMNIQFAI--KDGDIYILEVNPRASRT----VPFVAKATGV 868 >gi|291570064|dbj|BAI92336.1| carbamoyl-phosphate synthase large subunit [Arthrospira platensis NIES-39] Length = 1077 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+ V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D++ KQ + GV CPS + Sbjct: 89 TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + + P +I+P G + + + + Q+L+E Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ + Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 42.6 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D+ + + + +L++++++ Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + + + + S +S +P + + + ++R +A+ Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALN 826 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F +V+ LE N + T P ++ G ++ Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872 >gi|284049940|ref|ZP_06380150.1| carbamoyl phosphate synthase large subunit [Arthrospira platensis str. Paraca] Length = 1077 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+ V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D++ KQ + GV CPS + Sbjct: 89 TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + + P +I+P G + + + + Q+L+E Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ + Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 42.6 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D+ + + + +L++++++ Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + + + + S +S +P + + + ++R +A+ Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALN 826 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F +V+ LE N + T P ++ G ++ Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872 >gi|262278629|ref|ZP_06056414.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202] gi|262258980|gb|EEY77713.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202] Length = 1201 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ ++ + + S + Y++ Sbjct: 147 AARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGLYLEKFVQHAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239 + + V ++ + PA + + Q++A Q++ Sbjct: 207 HIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQCDYLQKVAIQLMQSVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F+ D +++ ++LE+N + G+T G +L+ WMV Sbjct: 267 YRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV---DLVEWMVTL 315 Query: 296 ASCL 299 AS Sbjct: 316 ASGD 319 >gi|254526071|ref|ZP_05138123.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9202] gi|221537495|gb|EEE39948.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9202] Length = 1098 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 96/315 (30%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL +AG+++ I D D V ++ KPD Sbjct: 29 SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 + G + V+ I A +++K +++ + ++ Sbjct: 89 TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + S+ + S P +I+P +G + + + +Q+LIE Sbjct: 149 ASNLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAINPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 Score = 40.6 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 8/177 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++K + + + ++ + +L++QY++ + Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYITEAVKVSPDHPILLDQYLNN-AIEID 782 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + + + +S ++ + + L + V++ L Q + Sbjct: 783 VDALCDSKGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNV 842 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+ F + K +F LE N + T P ++ G +L +++ Sbjct: 843 VGLINLQFAVTNTNNKENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895 >gi|157413412|ref|YP_001484278.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9215] gi|157387987|gb|ABV50692.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9215] Length = 1098 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 96/315 (30%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL +AG+++ I D D V ++ KPD Sbjct: 29 SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 + G + V+ I A +++K +++ + ++ Sbjct: 89 TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + S+ + S P +I+P +G + + + +Q+LIE Sbjct: 149 ASDLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAINPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 65/177 (36%), Gaps = 8/177 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++K + + + ++ + +L++QY++ + Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYINEAVKVSPDHPILLDQYLNN-AIEID 782 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + + + + +S ++ + + L + V++ L Q + Sbjct: 783 VDALCDSNGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNV 842 Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G+ F + K +F LE N + T P ++ G +L +++ Sbjct: 843 VGLINLQFAVTNTNNKENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895 >gi|154487011|ref|ZP_02028418.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis L2-32] gi|154084874|gb|EDN83919.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis L2-32] Length = 1126 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + + +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + + + ++ D++LIE+ Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAVNPGTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|255308625|ref|ZP_05352796.1| carbamoyl phosphate synthase large subunit [Clostridium difficile ATCC 43255] Length = 1068 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L + I D D V ++ KP+ G Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNTPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ ++I T + D R + V V Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P V++P G + ++ + L + Q+LIE+ Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + ++ + + +++ Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|299821733|ref|ZP_07053621.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM 20601] gi|299817398|gb|EFI84634.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM 20601] Length = 1069 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYRVVLVNSNPATIMTDTEMADKVYIEPITLDFVSRIIRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110 L G G + + + E + +L + L+ K R VP Sbjct: 90 LGGQTGLN-MAMELAEAGILEECGVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPDSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I I P +++P G + D+ + + + Q L+E+ Sbjct: 149 IHNLEEAKRFVERIGYPVIVRPAYTLGGSGGGICHDDKDLQEIVSSGLKLSPVTQCLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + V + ++ + + Y+ ++ + Sbjct: 209 SIAG-FKEVEYEVMRDANDNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDV 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 268 SLKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I+ + V V+ +P G Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHVIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A + D+ + P + + Sbjct: 640 INLAEGLAAKGVKILGTSLEAIDRAENRDEFEKALEKLAIPQPEGKTATSVEEALTIARQ 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + +++ ++ + + + N +L+++YV G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEGLKYYMNNAVKVNPKHPVLVDRYVQGQEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V P +I + + + G Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRISQKVKDTIVDYTTRLAIGLDIIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + ++ +VF +E+N + T P ++ + ++ Sbjct: 816 MLNIQYVI--AGEEVFVIEVNPRSSRTA----PFLSKITDIPMANVATKII 860 >gi|148272964|ref|YP_001222525.1| putative carbamoyl-phosphate synthase large subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|167006437|sp|A5CRX5|CARB_CLAM3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|147830894|emb|CAN01838.1| putative carbamoyl-phosphate synthase large subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1096 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG L + G +V + D + ++ +PD Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPGFADATYIEPITSEVLEKIIIKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G + ++ L + + + A D+ K +V V Sbjct: 89 TLGGQTALNAAIRLDELGILAKHGVELIGAKVEAIQKGEDRQLFKDLVIESGADVARSHV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P VI+P LG Q + + + ++L+E+ Sbjct: 149 AKTLEQAVEFAEDLGYPLVIRPSFTMGGLGSGFAHTRQELERMVADGLQSSPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D T + + + + + Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQHMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP ++ +E+N P ++ S + G+ ++ Sbjct: 269 IDIIRRVGVDTGGCNIQFAVDPADGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|56419330|ref|YP_146648.1| carbamoyl phosphate synthase large subunit [Geobacillus kaustophilus HTA426] gi|56379172|dbj|BAD75080.1| carbamoyl-phosphate synthase(arginine-specific) large chain [Geobacillus kaustophilus HTA426] Length = 1042 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVEAVEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLNESPIHQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ I+ + SV V+ + Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ Sbjct: 637 QFGGQTAINLVKGLEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLVANNAEE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +++P G+ ++ + + + Q +LI+ Y+DG E Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLAALIEQGELTY---PILIDAYLDGKE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAH 235 ++ D T+I +P + + S +S LPA+ + ++ A Sbjct: 754 AEADIVTD----GTDIVLPVIIEHVEKAGIHSGDSYAWLPAQTLTGEEKAKIIDYAGRIA 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G +GI ++ V+ LE+N + T P ++ G ++ ++ Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861 >gi|149174998|ref|ZP_01853622.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Planctomyces maris DSM 8797] gi|148846335|gb|EDL60674.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain [Planctomyces maris DSM 8797] Length = 1084 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + + V+ KPD Sbjct: 29 SGTQACKALREDGYEVVLVNSNPATIMTDPETAHRTYIEPITWQYIQKVIEIEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 L G + L ++ G + ++ + R + + + + Sbjct: 89 TLGGQTGLNAAMDLARRGILDQLGVELIGAKEAVIAKAESRDQFKEAMTKIGLDCPRSAV 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M+ + I P +I+ G V + + + + +++L+E+ Sbjct: 149 VHNMEEANAAVKDIGLPIIIRASYTLGGTGGGVAYNREEFVEKVRSGLALSPVNEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SILGWKEYEMEVMRDQADNVVIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAT 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IACMREIGVETGGSNVQFAVNPDTGRMTIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 31/286 (10%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ G + ++ V + +KPD G Sbjct: 593 ALQELGIESIMVNSNPETVSTDYDTSDHLFFEPLTTEDVLNICDRMKPDGVIVQFGGQTP 652 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ ++ P + Sbjct: 653 LNLARGLEAAGVNIIGTSPEMIDAAEDRERFQAILEKLELHQPPNGIATDTESARNVASK 712 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + + ++S+ + ++ + + +L++++++ V Sbjct: 713 IGYPILVRPSYVLGGRAMEICYDEESLVRYMNEAVNASPDHPVLVDRFLED---AIEVDV 769 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 DA D V + E S +S VLP + + E++R + + +G Sbjct: 770 DAISDGITTLVGGVMEHIEEAGVHSGDSACVLPPHSLPESVINEIKRATHALARELKVKG 829 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + F + V+ LE+N + T P ++ G S Sbjct: 830 LMNIQFAVKQTDDEYKVYILEVNPRASRTS----PFVSKATGISLP 871 >gi|312135186|ref|YP_004002524.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor owensensis OL] gi|311775237|gb|ADQ04724.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor owensensis OL] Length = 1075 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 98/318 (30%), Gaps = 42/318 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + + ++ + D Sbjct: 29 SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G + IL+ + + I A + D+ + + V Sbjct: 89 TLGKQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMIKIGEPVVPSDV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + S++ Q+L+E+ Sbjct: 149 VNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARKGLSYSPVHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 + G + + + + +S V P++ Y+ ++ Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRT 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A A+ G F +P S + +E+N P ++ S + GY + Sbjct: 267 SALKIIDALKIEGGCNVQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322 Query: 290 LWM--------VEDASCL 299 + +E+A Sbjct: 323 AKIALGYTLDEIENAITK 340 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S + AL G K I D D S L L + N++ Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDILFFEPLTKEDVLNIIETVKAEGVIV 636 Query: 60 -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116 + L I + ++ D+ R ++++ + + Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPQGFTCYTLQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 ++ + + P +++P G+ + D I L + + + +LI++Y+ G E Sbjct: 697 ALEIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNDHPILIDKYIVGKE 755 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235 + + D + P + S +S + PA+ I + + Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEDRIVEYTYKIA 811 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + C+G+ F+ + +++ +E+N + T P ++ G EL Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858 >gi|251771868|gb|EES52442.1| carbamoyl-phosphate synthase, large subunit [Leptospirillum ferrodiazotrophum] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 31/301 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L++ G++VS + D D V VL +PD Sbjct: 29 SGTQAVKTLKEEGYRVSLVNSNPATIMTDPDLADATYMVPLTVEKVSEVLERERPDAILP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + IL+ L I S + ++ D+ + K+ ++ G+ V S L Sbjct: 89 TMGGQTALNLAVALARDGILDRLGIVLLGSSLETIEMAEDRGKFKEAMARIGLSVPQSFL 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L +S P +I+P G V+ + +L + ++L+E+ Sbjct: 149 VRSLPEAMETLSSLSFPLLIRPSFTLGGTGQSVVYNREEFSRAVLFGIDQSPIGEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + Sbjct: 209 SLIGWKEFELEVVRDKKDNAIIVCSIENVDPMGVHTGDSITVAPAMTLTDREYQRLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +E+N P ++ S + G+ + Sbjct: 269 IDILREVGVETGGSNVQFAVNPADGRFVVIEMN--PRVSRSS--ALASKATGFPIARVAT 324 Query: 291 W 291 Sbjct: 325 R 325 Score = 42.2 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 + P + + E+ R + +A+ +G+ F + V+ LE+N + T Sbjct: 793 CFIPPRSLSETVLAEICRQTRVLGEALSVKGLMNIQFAV--QNETVYVLEVNPRASRT-- 848 Query: 272 SIFPEMAAYAGYSFRELLLWM 292 P + G S +L + + Sbjct: 849 --VPFTSKAIGLSLPKLAMRI 867 >gi|222148841|ref|YP_002549798.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium vitis S4] gi|221735827|gb|ACM36790.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium vitis S4] Length = 1243 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 LI P ++K GG +G+ + S+ Y++ Sbjct: 146 QAELIGYPVMLKSTAGGGGIGMQLCHDATSLQAAFDTVQRTAKASFGDARVYLERFVSKA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + + V L+ + PA D + + + A +++ Sbjct: 206 RHVEVQIFGDGQGRVIALGERDCSLQRRNQKVIEETPAPGLSDAVRQRLHAAAVSLGRSV 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 R +F++DP ++ ++LE+N P +T A G +L+ WM+ Sbjct: 266 HYRSAGTVEFIYDPARKEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMI 313 Query: 294 EDAS 297 A+ Sbjct: 314 RQAA 317 >gi|160892510|ref|ZP_02073300.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50] gi|156865551|gb|EDO58982.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50] Length = 1067 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A E G++ + D D V ++ +PD A G Sbjct: 583 AFERKGYQTIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVDLERPDGAVVQFGGQTA 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ +++ + Sbjct: 643 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTRDEALEAANE 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 703 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHVQEHPVLVDKYIMGKEVEVDAVC 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ I + ++ ++ G Sbjct: 763 DGEDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKIKRVIEDYTRKLANSLHVIG 818 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 819 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 863 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 42/317 (13%), Positives = 97/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G V I+ D+ + V+ KPD Sbjct: 30 GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTADVVKAVIEKEKPDSLLPT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + ++ + + T S + A + + V + Sbjct: 90 LGGQAALNIAMELEESGFLREHDVMLIGTSSSTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + + ++ L+ + Q+L+E+ Sbjct: 150 TTVKAGLEFVKKIGYPVVLRPAYTLGGSGGGIAENEEEFVEILMNGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + RG F P + + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNIRGGCNVQFALHPTTFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYNLDEIQNAITKK 341 >gi|88705674|ref|ZP_01103384.1| Carbamoyl-phosphate synthase large chain [Congregibacter litoralis KT71] gi|88700187|gb|EAQ97296.1| Carbamoyl-phosphate synthase large chain [Congregibacter litoralis KT71] Length = 1072 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + +V ++ KPD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWQTVQRIIEVEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G D + +LE + + A + D+ Q + G+ Sbjct: 89 TMGGQTALNCALDLAREGVLEANGVELIGATKEAIDKAEDRELFDQAMKRIGLETPRASF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G + + ++ + +LLI++ Sbjct: 149 ARSMDEAHAVLDKIGFPCIIRPSFTMGGSGGGIAYNREEFEEICVRGLDLSPTSELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + + Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAVLREIGVETGGSNVQFGMCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 101/299 (33%), Gaps = 37/299 (12%) Query: 20 KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 A A+ + G++ I D D V ++A +P+ Sbjct: 583 HAVL-AMREDGYETIMINCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPEGVIVQF 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + A ++ + P ++ + Sbjct: 642 GGQTPLKLARALEAAGVPIIGTTPDAIDRAEDRERFQHLIQDLDLLQPANTTVRSVEEAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 ++ I P V++P + ++ +++ + + ++ S + +L++ ++ IE+ Sbjct: 702 EAARSIGYPLVVRPSYVLGGRAMEIVYREEDLLRYMREAVSVSDESPVLLDSFLSAAIEV 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S ++ + P +P + E++ A Sbjct: 762 DIDAVSDGEQVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAAVQDEMREQVRQMALA 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAA-YAGYSFRE 287 +G +G+ + +V+ +E+N P ++ S+ A AG S ++ Sbjct: 819 LGVKGLMNVQLAW--QDEQVYVIEVNPRASRTVPFVSKCIGTSLAKVAARCMAGVSLKD 875 >gi|33592551|ref|NP_880195.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis Tohama I] gi|33572197|emb|CAE41743.1| carbamoyl-phosphate synthase large chain [Bordetella pertussis Tohama I] gi|332381969|gb|AEE66816.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis CS] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + + Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + G++ + D D S Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVSIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P ++ G L + A R Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|33595902|ref|NP_883545.1| carbamoyl phosphate synthase large subunit [Bordetella parapertussis 12822] gi|33565981|emb|CAE36532.1| carbamoyl-phosphate synthase large chain [Bordetella parapertussis] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + + Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + G++ + D D S Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P ++ G L + A R Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|33600433|ref|NP_887993.1| carbamoyl phosphate synthase large subunit [Bordetella bronchiseptica RB50] gi|33568032|emb|CAE31945.1| carbamoyl-phosphate synthase large chain [Bordetella bronchiseptica RB50] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L+ + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + + Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + G++ + D D S Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P ++ G L + A R Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|325695911|gb|EGD37802.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis SK160] Length = 1059 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ L + + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + I Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELHIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPILVDSYILGDECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860 >gi|184200978|ref|YP_001855185.1| carbamoyl phosphate synthase large subunit [Kocuria rhizophila DC2201] gi|226700929|sp|B2GI87|CARB_KOCRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|183581208|dbj|BAG29679.1| carbamoyl-phosphate synthase large chain [Kocuria rhizophila DC2201] Length = 1106 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+D G +V ++ + +V ++A +PD Sbjct: 29 SGTQALRVLKDEGLRVILVNSNPATIMTDPEFADATYVEPITPETVEKIIAKERPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G + LE + + + A L D+ K VV CG S+ Sbjct: 89 TLGGQTALNTALALDANGALEKYGVELIGADVDAINLGEDREAFKGVVERCGAESARSVI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P LG + + + ++ ++L+E+ Sbjct: 149 VHSMDEALAAAEQLGYPMVVRPSFTMGGLGSGLAYNETDLHRIAGAGIQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M + D + + + + + + Sbjct: 209 SILGWKEYELEMMRDAKDNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDREYQRMRDIA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|169827040|ref|YP_001697198.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Lysinibacillus sphaericus C3-41] gi|226700934|sp|B1HQC1|CARB_LYSSC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|168991528|gb|ACA39068.1| Carbamoyl-phosphate synthase pyrimidine-specific large chain [Lysinibacillus sphaericus C3-41] Length = 1065 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V I+ + V +L +PD Sbjct: 30 GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + EI T + A D R+ VP I Sbjct: 90 LGGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + DQ + + ++ Q L+E+ Sbjct: 150 HSLDEAKRFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDAVDNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 90/279 (32%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A + DK + P + + + Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRDLNIPQPQGETAVSTVEALAIGER 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + + + + +L+++Y+ G E+ + Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + P K+ + + +G G+ Sbjct: 760 DGEHVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQYQKDTLVDYTTRLAKGLGIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +V+ +E+N P ++ ++ P Sbjct: 817 MNIQYVISQ--GEVYVIEVNPRSSRTVPFLSKITNIPMA 853 >gi|126649699|ref|ZP_01721935.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905] gi|126593418|gb|EAZ87363.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905] Length = 1065 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V I+ + V +L +PD Sbjct: 30 GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + EI T + A D R+ VP I Sbjct: 90 LGGQTGLNMAIELDQSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + DQ + + ++ Q L+E+ Sbjct: 150 HSLDEAKKFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + + ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDAVDNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 89/279 (31%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ +P G Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + A + DK P + + + Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRDLDIPQPQGETAVSTVEALAIGER 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + + + + +L+++Y+ G E+ + Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELKHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + P K+ + + +G G+ Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQHQKDTLVDYTTRLAKGLGIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +VF +E+N P ++ ++ P Sbjct: 817 MNIQYVISQ--GEVFVIEVNPRSSRTVPFLSKITNIPMA 853 >gi|116621513|ref|YP_823669.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter usitatus Ellin6076] gi|116224675|gb|ABJ83384.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter usitatus Ellin6076] Length = 1070 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG A AL GF+V + D + + ++ +PD + Sbjct: 29 SGTQAAKALRADGFEVILVNSNPATIMTDPNLADKTYVEPLTRPYLEEIIRRERPDALLS 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G G + V+ +L+ + + I A + D++ K + G+ S Sbjct: 89 TVGGQTGLNLSVELAEAGVLDKYGVELIGAKIDAIKKAEDRLLFKDAMRKIGLATPQSQL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I ++ I P +++P G + + + L + + + ++L+E+ Sbjct: 149 ISTVAAGLEFAEKIGYPNILRPSFTMGGTGGGIAYNKEELVEILERGIALSPVHEVLMEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 G + + D I +F + + + Sbjct: 209 SALGWKEYELEVMRDLADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDREYQMMRDGA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 LRCLREIGVDTGGSNVQFAINPDDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 37.2 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 100/265 (37%), Gaps = 17/265 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + +V ++ KPD G + + L+ L +P + Sbjct: 606 DRLYFEPLTL---ENVLNIVDTEKPDGVIVQFGGQTPLNLALP--LKRLGVPIIGTDPEN 660 Query: 87 SALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 L+ D+ +++ +P + + P +++P +++ Sbjct: 661 IDLAEDRKLFGKLLDDLKIPCPANGTATSVEEACAVAARVGYPVLVRPSYVLGGRAMVIA 720 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 ++ + + ++ +++ +L++++++ V DA D T++ + + E Sbjct: 721 YDEEMVRQYMREAVTFSQERPVLVDRFLED---ATEVDVDALGDGTDVLIAGIMEHIEEA 777 Query: 205 KYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 S +S+ VLPA+ +I ++ +A+ G+ + + V+ LE+N Sbjct: 778 GVHSGDSSCVLPAQSLSREILDTIEDYTVRLAKALKVIGLMNVQYAI--QNGVVYVLEVN 835 Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288 + T P ++ G ++ Sbjct: 836 PRASRT----VPYVSKATGVPLPKI 856 >gi|319793966|ref|YP_004155606.1| carbamoyL-phosphate synthase, large subunit [Variovorax paradoxus EPS] gi|315596429|gb|ADU37495.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus EPS] Length = 1082 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/309 (12%), Positives = 82/309 (26%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111 + G + + L + + + + + Sbjct: 89 TMGGQTALNCALDLWRNGVLDKYTGASTHKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148 Query: 112 --------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 Q + P VI+P G + + + Sbjct: 149 GSARSGIAHTMDEAWAVQKTLGFPTVIRPSFTLGGTGGGIAYNPDEFETICKRGIEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 96/295 (32%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + +S P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 704 EKAAALSYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAVE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + + + +S ++ + P + + E++R + A+ Sbjct: 763 CDVDCIRDAEGGTLIGGVMEHIEQAGVHSGDSACSLPPYSLSAETIAELKRQSAAMAAAL 822 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F K ++ LE+N + T P ++ G ++ Sbjct: 823 NVVGLMNVQFAIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGIQLAKVAAR 873 >gi|167629522|ref|YP_001680021.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium modesticaldum Ice1] gi|167592262|gb|ABZ84010.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium modesticaldum Ice1] Length = 1084 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + S+ ++A +PD Sbjct: 30 GTQACKALKEEGIEVVLVNSNPATIMTDANMADHVYIEPLDVPSLTKIIAQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V L+ + + + + D+ + +P+ + Sbjct: 90 LGGQTGLNLAVALSQAGVLDQYNVRLLGTSLETIKKAEDRELFKKTMQEIGEPIPLSEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P +I+P G + + + + + Q+L+EQ Sbjct: 150 SNLDQAVAFARQAGFPLIIRPAYTLGGTGGGIAHTEAELLTICDRGLKKSMIGQVLLEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + S D + ++ + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDSNDNCITICNMENLDP-VGIHTGDSIVVAPSQTLTDKEYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F P S +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKVEGGCNVQFALHPESDSYIVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 75/246 (30%), Gaps = 8/246 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ KP G + + I T + +A K + Sbjct: 616 EDVLNIVDKEKPRGVVVQFGGQTAINLAAGLHEHGVPILGTSLEGIDAAEDRKKFEALLK 675 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 S + P +++P + V++ + + + + Sbjct: 676 RLGIPQSEGRSATSADEAKAIAEELGFPVLVRPSYVIGGRAMEVVENVKDLASYMETAVR 735 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + +L+++Y+ G E+ + D + + + +S + P + Sbjct: 736 ISPKHPILVDKYIRGREVEVDAISDGNDTLIPGIFEHIERAG---VHSGDSMAVYPPQSL 792 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 + + +A+G G+ ++ D KV+ LE+N + T P ++ Sbjct: 793 KREERDTIVDYTMRIAKALGVIGLLNIQYVVDGQ-GKVYVLEVNPRASRT----VPILSK 847 Query: 280 YAGYSF 285 G Sbjct: 848 VTGVPM 853 >gi|309776342|ref|ZP_07671330.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308915938|gb|EFP61690.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 1068 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V I+ + ++ +PD Sbjct: 30 GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTLEFASRIIYKERPDAILGS 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110 L G G + V + + IL + L R VP Sbjct: 90 LGGQTGLNL-VVELANSGILKEYEVEILGTDLDAINKAEDRELFRDLMYEIKEPVPESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P V++P G ++ + + + Q LIE+ Sbjct: 149 VHTVEEAISFANEIGYPVVVRPAYTLGGTGGGFADNEEELRVIADNGLKLSPVHQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + I V + ++ + + ++ ++ Sbjct: 209 SIAG-FKEIEYEVMRDYNDNAIVVCNMENIDPVGIHTGDSMVVAPVQTLSDREHQMLRNA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 32/280 (11%) Query: 26 LEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFNVLH-------------GNFGED 65 L + G++ I+ D S+ L + +P +V+H Sbjct: 581 LRECGYEAIVINNNPETVSTDFSISDKL-YFEPLTIEDVMHVVDLEQPLGVVVQFGGQTA 639 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHL 123 + L + + + + D+ + ++ +P + + Sbjct: 640 INLADQLVERGVKILGTSLENIDRAEDRHAFEAMLHELDIPQPTGQTAVEVEEAVKIANR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ D+ + + + +H +L+++Y+ G EL + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVHNDEDLRIYMATAVKEISHDAPILVDKYIVGKELEIDAI 759 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + P I + + + G Sbjct: 760 CDGEQVYIPGIMEHIERAGIHSG---DSISVYPPQTISDKVRDTIIDYGIRIGKGFHFIG 816 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ + + +V+ LE+N P ++ ++ P Sbjct: 817 LYNIQFIVEAGTEQVYVLEVNPRSSRTVPFLSKITGVPMS 856 >gi|288553456|ref|YP_003425391.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus OF4] gi|288544616|gb|ADC48499.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus OF4] Length = 1048 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G KV ++ + S+ ++ KPD Sbjct: 30 GTQACLALKEEGIKVILVNNNPATVMTDEACADVVYFEPLTVESIKKIIQKEKPDGILAT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + +E+ T + ++ R+ + VP + Sbjct: 90 LGGQTGLNLALALHDKGILEELDVELLGTPIESIKKGEDREEFRALMHELNEPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + + + + + + + +Q L+E+ Sbjct: 150 TTVDGALQFAESVGYPIIVRPAYTLGGAGGGIAENEAELLRIIKGGLALSPINQCLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDENDTCITICNMENIDPVGIHTGDSMVVAPSQTLTDVEYQMLRSVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 269 VKIIRALGIVGGCNIQFALDPYSKRYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324 Query: 292 M 292 + Sbjct: 325 L 325 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 34/292 (11%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 A +L G++ I+ + V ++ +P+ L G Sbjct: 582 AKSLHQLGYEAIIINNNPETVSTDYATADRLYFEPLTVEDVLNIIDIEEPEGVVVGLGGQ 641 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + + I T + + K + + ++ Sbjct: 642 TAISLVEGLEEAGIHIYGTKTETIDQLEDRGKFYEFMNQVNVPHIPGVTAEHKADAIEKA 701 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P +++P G+++ Q + L LLI+ Y G+EL V Sbjct: 702 SEIGYPVLVRPSYVIGGQGMMIATSKQELKEVLDSKQYDLTY-PLLIDAYYPGVELEVDV 760 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + + +S + + ++ + + + + R Sbjct: 761 LTDGNDIYIAGLFEQIEKAG---VHSGDSIAVTPSYSVSDEVKELILTYTSKMAKGMDLR 817 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ S ++ +EIN + T P ++ G L+ + + Sbjct: 818 GIFNVQFVLFEES--LYVIEINPRASRT----VPILSKING---ENLIEYTI 860 >gi|325959948|ref|YP_004291414.1| carbamoyl-phosphate synthase, large subunit [Methanobacterium sp. AL-21] gi|325331380|gb|ADZ10442.1| carbamoyl-phosphate synthase, large subunit [Methanobacterium sp. AL-21] Length = 1060 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L D G + + DVD V ++ KPD Sbjct: 29 SGSQACKSLMDEGIETVLVNSNPATIQTDVDMADTVYVEPLTPEIVAKIIEKEKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + L+ +E+ + + + + + + +P C ++ Sbjct: 89 TMGGQTGLNIATGLEKIGALKDVEVIGSSVQTIRNVEDRELFGKFMLELNEPIPHCRAVT 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +D+ I P +++P G V + + + + +Q+LI++ V Sbjct: 149 TLDEAIDAVTEIGYPVIVRPAFTLGGTGGGVAHNQKELVDIATRGLDMSFINQVLIDESV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLA 231 G + + + + S V P++ D+ + ++ + Sbjct: 209 IG--WKEFEYEVVRDKNDTCIIVCNMENLDPMGIHTGESVVVAPSQTLSDVDNQRLRNAS 266 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ +G F F+ + +E+N P ++ S + GY ++ Sbjct: 267 IKIIRALQIQGGCNIQFAFNAETGAYKVIEVN--PRVSRSS--ALASKATGYPIAKISSK 322 Query: 292 M 292 + Sbjct: 323 I 323 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 86/290 (29%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+D G + I D+ V ++ +PD G Sbjct: 576 ALKDEGIETIIINNNPETVSTDYDISNKLYFEPLTLEDVMSIMDKEEPDGVVVQFGGQTS 635 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V E ++I T + ++ + + Sbjct: 636 INLAVPLAEEGIQILGTAHESIDRVEDRERFTEVLNLLEIPQADYGIAYSFEDSKLVADK 695 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + ++ + + ++ + +L++++ D IE+ + Sbjct: 696 IGYPVLVRPSYVLGGRAMEIVYDANELKRYMKEAVKISPEHPILVDKFLEDAIEIDVDAL 755 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P I ++ ++ + G Sbjct: 756 SDGEDVFIGGIMEHIEEAG---VHSGDSACVIPPQSISKEVLDTMKEYTTRLALELEVVG 812 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + KV+ LE N + T P ++ G ++ + Sbjct: 813 LMNIQYAV--KDEKVYILEANPRASRT----VPFVSKAVGVPLAKIAAML 856 >gi|304315759|ref|YP_003850904.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777261|gb|ADL67820.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1073 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 32/290 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G K I D D V ++ KP + G Sbjct: 581 ALRSKGVKSIIINNNPETVSTDFDTGDRLYFEPLTLEDVLNIVEKEKPLGVMVMFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + ++ +K + P L D Sbjct: 641 INLAQGLYSSGVNILGTSFESIDTSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALT 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + + Q I + + + G +LI++YV+G E+ + Sbjct: 701 LGFPLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAIKVSPGKPILIDKYVEGREVEVDAVS 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S + PA+ + + + +G Sbjct: 761 DGVDVLI----PGIMEHIERAGVHSGDSFSMYPARNLSEHEIFTIIDYTKKISNVLNVKG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ V+ LE+N + T P M+ G ++ + + Sbjct: 817 LINIQFVV--KDGVVYVLEVNPRASRT----VPVMSKATGVPMIDIAVKI 860 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG +L++ G KV ++ + + + ++ +PD Sbjct: 29 SGTQACKSLKEEGLKVILVNNNPATIMTDTEIADIVYMENPEVDVLEAIIDKERPDGILG 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + I++ I + I + + D+ + K + + Sbjct: 89 TIGGQTGLNVVVKLKESGIIDKYGIKVLGTSIDSIKTAEDRELFKKKMEEIGEPIAESTT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P +++P G ++ ++ + + + ++LIE+ Sbjct: 149 VNNVEDAVKFAEKCGYPLIVRPAFTLGGTGGGIVNNEEELRVVTDMGLKKSMAHEVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D +F + + Y+ ++ Sbjct: 209 SLYGYKEIEYEVMRDSNDNCITICNMENFDPVGVHTGDSIVVAPSQTLTDYE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + +A+ G F DP S + + +E+N P ++ S + GY Sbjct: 268 SLKIIKALKIEGGCNIQFALDPNSHQYYVIEVN--PRVSRSS--ALASKATGYP 317 >gi|256809979|ref|YP_003127348.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanocaldococcus fervens AG86] gi|256793179|gb|ACV23848.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanocaldococcus fervens AG86] Length = 481 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 90/297 (30%), Gaps = 38/297 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G ++ + + V ++ +PD Sbjct: 26 SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPDIVEKIIEKERPDAILP 85 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + +L+ I S I ++ D+ + V C + Sbjct: 86 TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAKAMAEINEPVTKCKA 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + ++ Q+LI++ Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDIASKGLKYSIIHQVLIDE 205 Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + + + + + ++ LP + + Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G F + + +E+N P ++ S + GY Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314 >gi|237737121|ref|ZP_04567602.1| carbamoyl-phosphate synthase subunit large [Fusobacterium mortiferum ATCC 9817] gi|229420983|gb|EEO36030.1| carbamoyl-phosphate synthase subunit large [Fusobacterium mortiferum ATCC 9817] Length = 1068 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + +L KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMAILEKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 ++I T + + A ++ + P + ++ + Sbjct: 641 AIKLANDLSDRGIKIIGTSADKIDEAEDRERFEEMMEELNINRPKGRGVWDVAHGIEIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P G+ + + ++ L S + + +LI++Y++GIEL + Sbjct: 701 EIGYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFERDSANPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + + +E+ + +A+ + Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEEELLEITKKMAKALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ K++ +E+N P ++ VS P Sbjct: 817 GMMNIQFI--AYQNKLYVIEVNPRSSRTVPYISKVSGVP 853 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 91/303 (30%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+A +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITVEFVEKVIAKERPDSILA 87 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + V+ IL+ + + I + D+ R + Sbjct: 88 GMGGQTALNMAVELAEKGILDKYGVKVIGTPIESIKRGEDRELFREAMEKIGEPIIKSKI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G D + L + + + Q+LIE+ Sbjct: 148 VESLEEGFKVANEIGYPVVVRPAYTLGGTGGGFANNDAELEDILSKGLALSRVGQVLIEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++ Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A IG G F P S + +EIN P ++ S + GY + Sbjct: 266 SALKIVNEIGVVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TRL 324 >gi|329767647|ref|ZP_08259167.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans M341] gi|328839074|gb|EGF88660.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans M341] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + IL+ + + + + + D+ R + VP I Sbjct: 90 LGGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + ++ Q L+E+ Sbjct: 150 TTLEEAREFVAEIGYPVIVRPAFTMGGTGGGICYDKKDLEEIVSSGLHYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A++DAG++ ++ + V ++ H P G Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPLGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T + +A DK P+ + + + Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + +L ++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + ++ + + G+ Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282 ++ +VF LE+N P ++ ++ P AG Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858 >gi|322374548|ref|ZP_08049062.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. C300] gi|321280048|gb|EFX57087.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. C300] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|322387503|ref|ZP_08061113.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis ATCC 700779] gi|321142032|gb|EFX37527.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis ATCC 700779] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|307704966|ref|ZP_07641854.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Streptococcus mitis SK597] gi|307621476|gb|EFO00525.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Streptococcus mitis SK597] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAQAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|307709226|ref|ZP_07645685.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis SK564] gi|307620172|gb|EFN99289.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis SK564] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|307708818|ref|ZP_07645280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis NCTC 12261] gi|307615184|gb|EFN94395.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis NCTC 12261] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|306825482|ref|ZP_07458822.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432420|gb|EFM35396.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|289168074|ref|YP_003446343.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis B6] gi|288907641|emb|CBJ22478.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis B6] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62 A++ AG++ + D SV L L + NV+ G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVVDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQMVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|229075644|ref|ZP_04208626.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18] gi|228707420|gb|EEL59611.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18] Length = 1018 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + ++ +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|229098357|ref|ZP_04229303.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29] gi|229104449|ref|ZP_04235117.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28] gi|229117382|ref|ZP_04246759.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3] gi|228666082|gb|EEL21547.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3] gi|228678971|gb|EEL33180.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28] gi|228685062|gb|EEL38994.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29] Length = 1018 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + ++ +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|285018123|ref|YP_003375834.1| carbamoyl-phosphate synthetase large chain protein [Xanthomonas albilineans GPE PC73] gi|283473341|emb|CBA15846.1| probable carbamoyl-phosphate synthetase large chain protein [Xanthomonas albilineans] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMGEIGLECPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 ARTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTSEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F + + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 39.9 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ +P G Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDLEQPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDQLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNESPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R +A+ G+ Sbjct: 767 IADKDGKVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPATQAELRRQVVELAKALHVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F D V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNDAGDDIVYLLEVNPRASRT----VPFVSKAIGVPLAKIAAR 873 >gi|269856951|gb|ACZ51500.1| DUR1p [Cryptococcus heveanensis] Length = 1237 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 19/187 (10%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177 I P ++K GG +G+ + I + + + + Sbjct: 154 AEKIGYPVMLKATAGGGGMGLQICWDSSEIEAAFESVHARGATLFSNTSMFMEKYVAKSR 213 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 V + + + + + + + + A + Sbjct: 214 HVEVQVFGNGLGQAVHFGERECSIQRRHQKVVEECPSPFVHRHPGMRERITSCAVSLASS 273 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPV-------SIFPEMAAYA----- 281 +G +FL D ++LE+N + G+T S+ + A Sbjct: 274 VGYGSAGTVEFLVDDTDGAFYFLEMNTRLQVEHGITEQCYGVDLVSLMLQQAEMQARGKG 333 Query: 282 GYSFREL 288 G F L Sbjct: 334 GIPFDNL 340 >gi|255657546|ref|ZP_05402955.1| carbamoyl phosphate synthase large subunit [Clostridium difficile QCD-23m63] Length = 1068 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C +L + I D D V ++ KP+ G Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + +A +K P + ++ Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + +H + +LI++Y+ G E+ Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P I +I +++ + Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ +G +L Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G +V I+ + + ++ +PD Sbjct: 29 SGTQACQSLKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ ++I T + D R + V V Sbjct: 89 GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P V++P G + + ++ + L + Q+LIE+ Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + ++ + + +++ Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ +G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|284161775|ref|YP_003400398.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus profundus DSM 5631] gi|284011772|gb|ADB57725.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus profundus DSM 5631] Length = 1091 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D D V ++ PD Sbjct: 29 SGSQACKALKEEGYEVVLVNSNPATIMTDPDMADRVYIEPLTADVVAKIIERETPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110 L G + + L E G A+ + R + P Sbjct: 89 TLGGQTALNLAVELGEMGVLDEYGVELIGAKLDAIKKAEDRELFKECMRKIGLDVPRSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + + + + + Q+LIE+ Sbjct: 149 ARDVDEALAIAEEIGYPVVVRPAFTLGGTGGGIAYNKKELREIVEKGLKLSLIHQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + ++ + Sbjct: 209 GVIGWKEYELEVMRDLADNVVIICSIENFDPMGIHTGDSITVAPAQTLSDVEYQQLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKIIRAIGVETGGSNIQFAVHPENGRIVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 84/289 (29%), Gaps = 31/289 (10%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ G++ ++ V + + KP+ G Sbjct: 592 LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYDNEKPEGVIVQFGGQTPL 651 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + +I T + A ++ P + I Sbjct: 652 NIAKDLEESGAKILGTSVDSIDFAEDRERFSKLLEELGIPQPEHGIAHSVEEAKEVARKI 711 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183 P +++P + ++ D+ + + ++ + +LI+++ D +E + Sbjct: 712 GYPVLVRPSYVLGGRAMEIVYDDEELERYVREAVEVSPEKPILIDKFLEDAVEAEVDALC 771 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S ++ + P +P I + A+ G+ Sbjct: 772 DGEEVVIGGILEHIEEAG---VHSGDSACVIPPISLPKHIIDTIIDYTRKIALALKVVGL 828 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 F V+ LE N + T P ++ G ++ + Sbjct: 829 INIQFAI--KDNVVYVLEANPRASRT----VPFISKATGLPLAKIAAKL 871 >gi|78355380|ref|YP_386829.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217785|gb|ABB37134.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1087 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++ +P Sbjct: 29 SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPCALLP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ ++ A S D R VP Sbjct: 89 TLGGQTGLNTALAVAETGVLEECGVELIGATRDVINKAESRDLFRQAMANIGLKVPASGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + + Q + + ++L+EQ Sbjct: 149 ARTMDDVRRLGAEMPFPLIVRPAFTLGGSGGGIAYNMEDLEEIASQGLAASMQSEILVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + ++ Sbjct: 209 SVLGWKEYEMEVMRDRNDNCVIVCSIENIDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + + +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFGINPENGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 13/263 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KPD G + V + + I TH + Sbjct: 618 DRLYFEPLTF---EDVMNIVEAEKPDGVIVQFGGQTPLNLAVPLMRAGVPILGTHPDSID 674 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ ++ P +++ + + I P V++P + V+ Sbjct: 675 RAEDRERFQALIQKLDLLQPANDTVMSLEEALKASETIGYPVVVRPSYVLGGRAMEVVYD 734 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + S +LI+++++ E+ + D + + Sbjct: 735 AEQLRTYFANSVGKAPEHPILIDKFLENATEVDVDALSDGCDTYVAGIMEHIEEAGIHSG 794 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P +P DI +E++R + G+ F +VF LE+N + Sbjct: 795 ---DSACVIPPHTLPADIVEEIRRQTVALATELKVVGLMNIQFAI--KDGRVFILEVNPR 849 Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288 T P ++ G L Sbjct: 850 ASRTA----PFVSKATGVPLPRL 868 >gi|239826269|ref|YP_002948893.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. WCH70] gi|239806562|gb|ACS23627.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. WCH70] Length = 1040 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + SV ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHEEGILEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +I+P G + + + + + + + Q L+E+ Sbjct: 149 ITSVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIDLVEKGLAESPITQCLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-YKEIEYEVMRDHTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL++ G++ ++ + V V+ + Sbjct: 577 SVHSVY-ALQEEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ Sbjct: 636 QFGGQTAINLVKGLEEANITLLGVTYDVIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + I P +++P G+ ++K +Q + L Q +LI+ Y+DG E Sbjct: 696 LISNAKKIGYPILLRPSYVIGGRGMFIVKNEQQLCALLEQRIITY---PVLIDAYLDGKE 752 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235 V+ D + + +P + + S +S +LP I + ++ A Sbjct: 753 AEVDVVADGNDIL----LPTIIEHVEKAGVHSGDSYAMLPAQTITDEEQSKIITYAEKIV 808 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + +GI ++ + +V+ LE+N + T P ++ G ++ ++ Sbjct: 809 KKLQFKGIMNIQYVI--ANDQVYVLEVNPRASRT----VPIVSKATGIPLAQIATKLL 860 >gi|88604413|ref|YP_504591.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1] gi|88189875|gb|ABD42872.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1] Length = 492 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 41/287 (14%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56 E+S+ A + G I + + H D AF Sbjct: 14 EISIR----VMRACRELGIDTVAIYSEADKDSLFVHY-ADEAFPVGPAPPSKSYLNKERI 68 Query: 57 ----------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103 +H G E+ + I + A K+RSKQ + Sbjct: 69 ISVAKKAGAEAIHPGYGFLAENAEFAKLCTEEGITFIGPKSKTIAAMGSKIRSKQTMKGA 128 Query: 104 GVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 GVPV P +D I P ++K GG +G+ ++ I + + Sbjct: 129 GVPVLPGTDGGIDDLDMAATVADSIGYPVIVKASAGGGGIGMQIVHDPSEIESAIEGAMR 188 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218 +++ + ++ P Sbjct: 189 IAESAFGDRTVFIEKYLQKPRHVEVQVFCDEHDNRIHMFERECSIQRRHQKLIEEAPCPV 248 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + ++ + + A +A+ +FL+D + + +++E+N + Sbjct: 249 MTPELRERMTNSALRVAEAVDYVNAGTVEFLYD--NGEYYFMEMNTR 293 >gi|295688377|ref|YP_003592070.1| carbamoyl-phosphate synthase large subunit [Caulobacter segnis ATCC 21756] gi|295430280|gb|ADG09452.1| carbamoyl-phosphate synthase, large subunit [Caulobacter segnis ATCC 21756] Length = 1097 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D D V ++ +PD Sbjct: 29 SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPEMVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + Q +L+ + + + D+ + + + G+ S Sbjct: 89 TMGGQTALNTALALEEQGVLKKFGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P +I+P + G + + + + + ++L+E+ Sbjct: 149 CHTLDEAMEGLEFVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 40.6 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59 AL+ G + + D D S L L + +LH Sbjct: 596 ALDAIGVESIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLELLHVEKSKGTLAGVIVQFG 655 Query: 60 GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119 G + I T + A ++ + P Sbjct: 656 GQTPLKLAHALEEAGIPILGTSPDAIDLAEDRERFQQLLNGLDIAQPENAIARTWDEARA 715 Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P+V++P G+ +I+ +++ + + + +L++ Y+ Sbjct: 716 EGDKIGFPFVMRPSYVLGGRGMEIIRDHEAMERYIAGAGEISLEHPILLDHYLS-RATEV 774 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V +A + +S ++ + P + + +E++R A+ Sbjct: 775 DVDALCDGKDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLKAETVEELKRQTVQMALALN 833 Query: 240 CRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 RG+ F + + +++ LE+N + T P +A G + + Sbjct: 834 VRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAAKI 885 >gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] Length = 417 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 45/219 (20%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 +A++ GG S ER +SL+S ++ LE VS ++ Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172 Query: 40 -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 +S L HL+ D+ F LHG FGEDG +QA+LE +PY +G A Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232 Query: 87 SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135 + ++ DK + ++ G V + L F ++ + S V+KP + Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292 Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 GSS+G+ V + + + D+++IE + +G Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEG 331 >gi|312112027|ref|YP_003990343.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y4.1MC1] gi|311217128|gb|ADP75732.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y4.1MC1] Length = 1041 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + SV ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 ITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLAESPITQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-YKEIEYEVMRDNTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRTS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ ++ + V V+ + Sbjct: 577 SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ Sbjct: 636 QFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + I P +++P G+ ++K +Q + L Q LLI+ Y+DG E Sbjct: 696 LVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLRALLEQGMIAY---PLLIDAYLDGKE 752 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235 V D + + +P + + S +S VLP I + ++ A Sbjct: 753 AEVDVAADGNDIL----LPTIIEHVEKAGVHSGDSYAVLPAQTIANEEQSKIITYARKIV 808 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + +GI ++ + +V+ LE+N + T P ++ G ++ ++ Sbjct: 809 KKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPLAQIATKLL 860 >gi|257126366|ref|YP_003164480.1| carbamoyl phosphate synthase large subunit [Leptotrichia buccalis C-1013-b] gi|257050305|gb|ACV39489.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia buccalis C-1013-b] Length = 1061 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/287 (10%), Positives = 96/287 (33%), Gaps = 32/287 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++++G++ ++ + V ++ +P+ G Sbjct: 579 KAIKESGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMAIVELEQPEGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T + +A + DK + + P+ + + + Sbjct: 639 AINLAEKLSRHGVKILGTALEEIDNAENRDKFEALLHRLNIPQPLGKTAFDTETAVKNAA 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ +++ + + + + +L ++Y+ G E+ + Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVYREEELRQYMENAVKVSPDHPVLTDRYLVGKEIEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D V + + +S + P + + + + + + G Sbjct: 759 CDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNVTDEQKQTLIDYTIRLARGLNIVG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AAYAGY 283 + ++ +V+ LE+N P ++ ++ P A G Sbjct: 816 LLNIQYVISE--GQVYVLEVNPRSSRTVPFLSKITGVPMANLAMKGI 860 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 32/293 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G+KV ++ + V ++ +PD Sbjct: 30 GTQACLSLREEGYKVILVNSNPATIMTDKEIADKVYIEPLTVEFVSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +LE + + + + + D+ R VP I Sbjct: 90 LGGQVGLNLAVELHESGVLEECGVELLGTKLESIKQAEDRELFRDLMNELKEPVPESDII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + D+ + + ++ Q L+E+ Sbjct: 150 HNLEEARKFVEKIGYPVIVRPAFTMGGTGGGICHNDEELEDIVTNGLRYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 ISG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREYHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 +A+ G DP S + +E+N P ++ S + GY Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFNYYIIEVN--PRVSRSS--ALASKATGYP 317 >gi|190346662|gb|EDK38801.2| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC 6260] Length = 404 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 25/278 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55 +A+ S+E SL SA L G + ID+D V + + K D+ Sbjct: 34 IAI----YSAEDAESL----HVLSADEAMLLPGVGAQAY-IDIDHVVSVAINS-KADVVV 83 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---IL 112 +G E A LE I + + K ++ + S VPV P I Sbjct: 84 PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLL 167 + I P ++K GG +G+ V ++ + + S +N+ L Sbjct: 143 DIAEAQSIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G + V G+ V + + + + K++ Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQR-RHQKVIEEAPSPFVENGRTSLRKQL 261 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 A ++ + +FL D + ++LE+N + Sbjct: 262 VTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNTR 299 >gi|331266652|ref|YP_004326282.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis Uo5] gi|326683324|emb|CBZ00942.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis Uo5] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAVSIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|149277329|ref|ZP_01883471.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39] gi|149232206|gb|EDM37583.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39] Length = 938 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A +L++ G +VS I+ + S+ +L K D Sbjct: 29 SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILTERKIDAVLP 88 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G ++ + + E + + A + ++ +Q++ GV V PS Sbjct: 89 TMGGQTALNLCKEAEERGVWEKHGVRVIGVDVDAIEKTENREAFRQLMIDIGVGVAPSKI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P VI+P G + K + L + + ++L+E+ Sbjct: 149 ANSFLEGKEAAQQIGYPLVIRPSYTLGGSGGGFVHKKEDFDHALQRGLEASPTHEVLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I +F + + + Sbjct: 209 AVFGWKEYELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + + +EIN P ++ S + GY ++ Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPENDDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 88/274 (32%), Gaps = 11/274 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ L G + ++I T + Sbjct: 611 DKLYFEPVFW---EHVREIIDLEKPEGVIVQLGGQTALKMAEKLHENGIKIIGTSYNDMD 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + P + + + P +++P G+ ++ Sbjct: 668 VAEDRGRFSDLLKELEIPYPRYGVAENAEEAIVVANEVGYPVLVRPSYVLGGQGMSIVIN 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D+ + +++ G+++LI+ ++D + + I + Sbjct: 728 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEETESDSISDGEDVHIVGLMEHIEP-AGIH 785 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S +S + P + + +++ + +A+ G+ F KV+ +E N + Sbjct: 786 SGDSSAVLPPFSLSEKVMNDMEVYSKKIAKALNVIGLLNIQFAV--KDEKVYVIEANPRA 843 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 T P +A + + ++ A+ L+ Sbjct: 844 SRT----VPFIAKAYDVPYINIAAKVMLGAAKLK 873 >gi|94499475|ref|ZP_01306012.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65] gi|94428229|gb|EAT13202.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65] Length = 1222 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AQQIGYPVMLKSTAGGGGIGMQLCQNQSDLENAFDSVKRLGSNNFSNDGIFLEKYITNAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + + + + PA I +++ A ++ Sbjct: 207 HIEVQVFADGKGNALAIGERDCSSQRRNQKVVEECPAPNLSQSIREQLHNTAEALLASVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVED 295 R +F++D + ++LE+N + G + + +L+ WM+ Sbjct: 267 YRNAGTVEFIYDSDEEQFYFLEVNT-----------RLQVEHGVTETVYDIDLVEWMLRL 315 Query: 296 AS 297 AS Sbjct: 316 AS 317 >gi|149184451|ref|ZP_01862769.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. SD-21] gi|148831771|gb|EDL50204.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. SD-21] Length = 1108 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAIKALKEEGYRVILVNSNPATIMTDPEMADATYIEPITPEIVAKIIDKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G LE + + A + ++ R ++ + G+ S + Sbjct: 89 TMGGQTALNCALALFNDGTLEKYGVQMIGANADAIDKAENRQRFREAMDKIGLESARSGV 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 N L P +I+P G + + + + ++LIE+ Sbjct: 149 ANTVDEAFAVLERTGLPAIIRPSFTLGGTGGGIAYNKAEFDKIVREGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEFEMEVVRDRKDNCIIICSIENVDPMGVHTGDSITIAPALTLTDKEYQIMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 IEVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 10/161 (6%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181 I P +++P + ++ + + + + + + +L++QY D +E V Sbjct: 743 RIGYPVLLRPSYVLGGRAMEIVDSEPQLDDYINTAVNVSGDSPVLVDQYLRDAVECDVDV 802 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D S + + +S ++ + P +P DI +E++R A +A+ R Sbjct: 803 VSDGSEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLPADIVEEMERQAKALAEALEVR 859 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 G+ F +V+ +E+N + T P +A G Sbjct: 860 GLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894 >gi|302344544|ref|YP_003809073.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii DSM 2075] gi|301641157|gb|ADK86479.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii DSM 2075] Length = 1084 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A+++ G +V ++ + V VL +PD Sbjct: 29 SGTQAVKAIKEEGIQVVLVNSNPATIMTDPELADRTYVEPITCEFVCEVLRRERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + ++ + E+ ++ A S + R VP Sbjct: 89 TLGGQTALNTALEVAQTGILEELGVEMIGATPAVIRKAESRQEFREAMEKIGLRVPGSVI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G V + S + +++IE+ Sbjct: 149 CRNLDDVRRAAEELGFPLVVRPAFTLGGTGGGVAYNIDELLETSRYGLSASLTSEVMIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEFELEVMRDRKDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQMMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVETGGSNVQFAINPKNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKMAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 10/247 (4%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ +PD G + V I T + A D+ Sbjct: 629 KEDVLNIIDSERPDGVIVQFGGQTPLNLAVPLERAGAPILGTPPDAIDRAEDRDRFCELL 688 Query: 99 VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158 + P + + I P V++P + ++ Q++ + + Sbjct: 689 RLLRLRQPDNGTATNVEEAVRIAEKIGYPVVVRPSYVLGGRAMEIVHDRQALEHYMATAV 748 Query: 159 SWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +L++++ D IE+ + D L V + + +S ++ + P Sbjct: 749 KASPDHPILVDKFLEDAIEVDVDAVCDGELCVVAGIMEHIEQAG---VHSGDSACVLPPH 805 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + + E+++ +G RG+ F ++ LE+N + T P + Sbjct: 806 TLGPAMIDEIRQATHALAFELGVRGLMNIQFAI--QGGLLYLLEVNPRASRT----VPFV 859 Query: 278 AAYAGYS 284 + G Sbjct: 860 SKATGVP 866 >gi|300764063|ref|ZP_07074058.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL N1-017] gi|300515053|gb|EFK42105.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL N1-017] Length = 51 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +N PG TP S++P + G + L+ +V+ A Sbjct: 1 MNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 35 >gi|161898980|ref|YP_201526.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|188575984|ref|YP_001912913.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520436|gb|ACD58381.1| carbamoyl-phosphate synthase, large subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V +++ KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|58427104|gb|AAW76141.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1090 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V +++ KPD Sbjct: 39 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 99 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 279 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334 Query: 291 WM 292 + Sbjct: 335 KL 336 Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883 >gi|253751581|ref|YP_003024722.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84] gi|253753482|ref|YP_003026623.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7] gi|253755692|ref|YP_003028832.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407] gi|251815870|emb|CAZ51481.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84] gi|251818156|emb|CAZ55953.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407] gi|251819728|emb|CAR45577.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7] Length = 1059 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 S+E VS + F+ + V V+ KP G + Sbjct: 599 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 644 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 + I T L A D P + +++ I P Sbjct: 645 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 704 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +++P + +++ ++ + + + + +L++ Y+ G E + D Sbjct: 705 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 764 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + + +S + P + ++ + + C G+ F Sbjct: 765 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 821 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E+N + T P ++ ++ ++ Sbjct: 822 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|281417667|ref|ZP_06248687.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum JW20] gi|281409069|gb|EFB39327.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum JW20] Length = 1072 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ +V ++ + V ++ KPD Sbjct: 30 GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKIIIKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ L+ + + A ++ D+ K + G P S + Sbjct: 90 LGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTMERIGEPCIASKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I+ P V++P G + ++ + + Q+LIE+ Sbjct: 150 NTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLRLSRVHQVLIEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSKGNVITVCNMENIDPVGVHTGDSIVVAPSQTLTDRE-YQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+G G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LKIISALGIEGGCNVQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 93/289 (32%), Gaps = 32/289 (11%) Query: 26 LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G++ D V ++ K D A G Sbjct: 584 LKQEGYETIIANNNPETVSTDFDTADRLYFEPLTPEDVENIVEKEKVDGAIVQFGGQTAI 643 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + +++ T + +A +K P +I +++ + + Sbjct: 644 KLTKALVEMGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANEL 703 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P G+ + D+ I + + +LI++Y+ G E+ + D Sbjct: 704 GYPVLVRPSYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISD 763 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 + P + S +S V P + + + +++ +A+ G+ Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +++ + + + +E+N + T P ++ G + + Sbjct: 820 INIQYVY--YNNEFYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862 >gi|154148753|ref|YP_001406899.1| carbamoyl phosphate synthase large subunit [Campylobacter hominis ATCC BAA-381] gi|153804762|gb|ABS51769.1| carbamoyl-phosphate synthase, large subunit [Campylobacter hominis ATCC BAA-381] Length = 1086 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 81/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56 SG A L+ G++V I D D + + K D Sbjct: 29 SGTQAAKTLKKLGYRVVLINSNPATIMTDPDFADATYIEPITKESILKIIKKEKIDAILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ++ ++ + + + +P Sbjct: 89 TMGGQVALNVAMEVFESGEFGDVKFLGAKPEAIKKGEDRVAFKEAMLKIGMDLPKSEYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 M++ + I P +I+ G V + ++LIE+ + Sbjct: 149 NMDEAMNAANDIGFPVMIRASYTLGGAGSGVAYNIDEFKELAQNGIEISPIHEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + K Sbjct: 209 LGWKEFEMEVIRDHKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQKMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324 Score = 52.6 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 88/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID + V+ KPD ++H L ++ + ++ D Sbjct: 615 FEPIDF-EHLRSVIEREKPDGV--IVHFGGQTPLKFAKRLNVMGAKIIGTSARTIDIAED 671 Query: 93 KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + + GV + + ++ I P +++P + + + + Sbjct: 672 RKKFSEFIKHIGVKQPKNDTAISEAEAIEKAAKIGYPVLVRPSYVLGGRAMRRVYNENEL 731 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ +D EL + D + + Sbjct: 732 KEYMNEAVKVSYHSPVLLDKFLIDATELDVDAISDGKDVYIGAIMEHIEEAGIHSG---D 788 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 +++ + P + ++ V + ++G G+ F +++ +E+N + T Sbjct: 789 SASILPPMSLSDEMIDNVNSVTKEIALSLGVIGLMNIQFAIFE--NELYMIEVNPRASRT 846 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 847 ----VPYVSKATGIPMAKVATR 864 >gi|146320640|ref|YP_001200351.1| carbamoyl phosphate synthase large subunit [Streptococcus suis 98HAH33] gi|145691446|gb|ABP91951.1| Carbamoylphosphate synthase large subunit [Streptococcus suis 98HAH33] Length = 1074 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 S+E VS + F+ + V V+ KP G + Sbjct: 621 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 666 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 + I T L A D P + +++ I P Sbjct: 667 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 726 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +++P + +++ ++ + + + + +L++ Y+ G E + D Sbjct: 727 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 786 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + + +S + P + ++ + + C G+ F Sbjct: 787 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 843 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E+N + T P ++ ++ ++ Sbjct: 844 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 52 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 111 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 291 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346 Query: 292 M 292 + Sbjct: 347 I 347 >gi|146318446|ref|YP_001198158.1| carbamoyl phosphate synthase large subunit [Streptococcus suis 05ZYH33] gi|145689252|gb|ABP89758.1| Carbamoylphosphate synthase large subunit [Streptococcus suis 05ZYH33] gi|292558232|gb|ADE31233.1| Carbamoyl-phosphate synthase, large subunit [Streptococcus suis GZ1] gi|319758016|gb|ADV69958.1| carbamoyl phosphate synthase large subunit [Streptococcus suis JS14] Length = 1081 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 S+E VS + F+ + V V+ KP G + Sbjct: 621 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 666 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 + I T L A D P + +++ I P Sbjct: 667 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 726 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188 +++P + +++ ++ + + + + +L++ Y+ G E + D Sbjct: 727 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 786 Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248 + + + +S + P + ++ + + C G+ F Sbjct: 787 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 843 Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + V+ +E+N + T P ++ ++ ++ Sbjct: 844 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 52 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 111 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 291 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346 Query: 292 M 292 + Sbjct: 347 I 347 >gi|125973466|ref|YP_001037376.1| carbamoyl phosphate synthase large subunit [Clostridium thermocellum ATCC 27405] gi|256005363|ref|ZP_05430328.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 2360] gi|125713691|gb|ABN52183.1| carbamoyl-phosphate synthase large subunit [Clostridium thermocellum ATCC 27405] gi|255990682|gb|EEU00799.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 2360] gi|316940297|gb|ADU74331.1| carbamoyl-phosphate synthase, large subunit [Clostridium thermocellum DSM 1313] Length = 1072 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ +V ++ + V ++ KPD Sbjct: 30 GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKIIIKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ L+ + + A ++ D+ K + G P S + Sbjct: 90 LGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTMERIGEPCIASKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I+ P V++P G + ++ + + Q+LIE+ Sbjct: 150 NTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLRLSRVHQVLIEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSKGNVITVCNMENIDPVGVHTGDSIVVAPSQTLTDRE-YQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+G G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LKIISALGIEGGCNVQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 94/289 (32%), Gaps = 32/289 (11%) Query: 26 LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G++ D V ++ K D A G Sbjct: 584 LKQEGYETIIANNNPETVSTDFDTADRLYFEPLTPEDVENIVEKEKVDGAIVQFGGQTAI 643 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + +++ T + +A +K P +I +++ + + Sbjct: 644 KLTKALVEMGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANEL 703 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P G+ + D+ I + + +LI++Y+ G E+ + D Sbjct: 704 GYPVLVRPSYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISD 763 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 + P + S +S V P + + + +++ +A+ G+ Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +++ + +++ +E+N + T P ++ G + + Sbjct: 820 INIQYVY--YNNELYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862 >gi|332528715|ref|ZP_08404692.1| biotin carboxylation domain-containing protein [Hylemonella gracilis ATCC 19624] gi|332041781|gb|EGI78130.1| biotin carboxylation domain-containing protein [Hylemonella gracilis ATCC 19624] Length = 1217 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 16/182 (8%) Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P ++K GG +G+ V + + +++ + Sbjct: 149 KVGYPIMLKSTAGGGGIGMRVCHSASELREAYEAVRRLGQNNFSDSGVFIEQYIERARHL 208 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 V ++ + PA + + +E+ A +A+ R Sbjct: 209 EVQIFGDGRGEVIALGVRDCSVQRRNQKVLEETPAPNLPEGMAEELCAAAIRLGKAVNYR 268 Query: 242 GISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +F++D +R+ ++LE+N + G+T ++ G +L+ WM+E A+ Sbjct: 269 SAGTVEFVYDDQARRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELAA 317 Query: 298 CL 299 Sbjct: 318 GD 319 >gi|319760267|ref|YP_004124205.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia vafer str. BVAF] gi|318038981|gb|ADV33531.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia vafer str. BVAF] Length = 1088 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 104/303 (34%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D V ++ +PD + Sbjct: 29 SGTQACKALREEGYRLILVNSNPATIMTDPDMVDSTYIEAIQWEIVYKIIQKERPDALLS 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G D + IL+ + I + + ++ + ++ + + S Sbjct: 89 TMGGQTALNCTLDLEKKGILKKFNVETIGVTIDSIHKAENRQKFQESIKRVKLETPKSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 M + I P +++P G + + + + +LLI++ Sbjct: 149 ARNINEAMSILNNIGLPCIVRPSFTLGGSGGGIAYTIEEFEHICQRGLFLSPNHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + L I V + ++ + T + Y+ ++ Sbjct: 209 SLIGWKEF-EMEVMCDLKDNCIVVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 AFL +AIG + G + F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 268 AFLVLRAIGIKSGGANVQFAVNPNNGRILVIEMN--PRVSRSS--ALASKATGFPIAKIS 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 Score = 44.5 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 97/303 (32%), Gaps = 34/303 (11%) Query: 22 CASA--LEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58 SA L + G+ V + D+ V ++ K Sbjct: 586 VHSAITLREEGYNVIIVNCNPETVSTDYDISDILYFEPVTLEDVLEIIRINKLKGVIVQY 645 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + I T + I+ A + ++ +S P ++ + + Sbjct: 646 GGQTPLKLATFIEKYGIPILGTSANIIDQAENRERFKSAIKYLKLKQPNSVTVSSIKLAL 705 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 + I P V++P + ++ + + L + ++ +L++ +++ IE+ Sbjct: 706 KNAKEIGYPIVVRPSYVLGGRAMQIVYNKKELLYYLKDAIQVSNNAPVLLDHFLENAIEV 765 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D + + Y +S ++ + + +I +++ Sbjct: 766 DVDLVCDGIQVFIGGIM---EHIEYAGIHSGDSACSLPAYTLDNNIQNIIRQQVEKIALY 822 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW-MVEDA 296 +G+ +V+ +EIN + T P ++ + ++ M+ + Sbjct: 823 FNIKGLMNVQLAI--KKNEVYIIEINPRAART----VPFVSKAINVALAKIGTRVMLGQS 876 Query: 297 SCL 299 C Sbjct: 877 LCD 879 >gi|194398207|ref|YP_002037878.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae G54] gi|226700937|sp|B5E512|CARB_STRP4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|194357874|gb|ACF56322.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Streptococcus pneumoniae G54] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|168575730|ref|ZP_02721645.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae MLV-016] gi|183578166|gb|EDT98694.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae MLV-016] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|113460694|ref|YP_718760.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus 129PT] gi|123327173|sp|Q0I203|PURT_HAES1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2 gi|112822737|gb|ABI24826.1| formate-dependent phosphoribosylglycinamide formyltransferase [Haemophilus somnus 129PT] Length = 393 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 85/308 (27%), Gaps = 38/308 (12%) Query: 19 GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58 GK L+ G +V +D +D + + ++ KPD + Sbjct: 24 GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRSYTISMLDGNALKALIEKEKPDYIVPEV 83 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + +P + L + + + + + Sbjct: 84 EAIATSTLVELEQAGFNVVPTAKATQLTMNREGIRRLAAEKLKLPT-SNYQFVDNFDDFQ 142 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P VIKP+ S G ++K + + G V+G Sbjct: 143 SAVENLGIPCVIKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 200 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 L V + P + + + Q +A + Sbjct: 201 D--YEITLLTVRHAEGTSFLAPIGHRQEKGDYRESWQPQAMSVQALAKAQHIAEKITTEL 258 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289 G RGI + +V + E++ +P GM +S F A G E+ Sbjct: 259 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 315 Query: 290 LWMVEDAS 297 ++ A+ Sbjct: 316 -NLISPAA 322 >gi|315612922|ref|ZP_07887833.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis ATCC 49296] gi|315315032|gb|EFU63073.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sanguinis ATCC 49296] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEKDLRSYMGTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|270292993|ref|ZP_06199204.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. M143] gi|270278972|gb|EFA24818.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. M143] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVIRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|296273931|ref|YP_003656562.1| D-alanine--D-alanine ligase domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098105|gb|ADG94055.1| D-alanine--D-alanine ligase domain protein [Arcobacter nitrofigilis DSM 7299] Length = 330 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%) Query: 40 RSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 + VL +PDL + + L+ + I YT +K+ + Sbjct: 47 EDLEKVLKR-RPDLVILAVKYIELRNKSNILLCDYFKKHNINYTGCEKDVLKYDSNKVLA 105 Query: 97 KQVVSSCGVPV-CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLD 153 K + G+ I + + + + + P +KP+ +S GI + Sbjct: 106 KSFLRRKGINTADYFIAMPKEYKEKEFPLEFPVFLKPVNTSNSYGIDEFSLANNFKEYES 165 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE-----LKYSS 208 + S + +L+E+Y+DG E T ++ ++ A+ S + Sbjct: 166 KILSLYTQFKEPILVEKYLDGREFTVAIIKKDEKELLVSAIEILAPLSNSGNNILSEKVK 225 Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268 ++ L + +++++A + + R R D + + + F+LE N+ PGM Sbjct: 226 RENSEKLLIIEDTLLKNKIEKIAQDSFMYLDIRDYGRIDIKMNKV-GECFFLEANLIPGM 284 Query: 269 TP-VSIFPEMAAYA-GYSFRELLLWMVEDA 296 FP ++ +L MVE A Sbjct: 285 NERTDYFPRAFKLTQDLNYDNILEMMVESA 314 >gi|289668839|ref|ZP_06489914.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1080 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V ++A +PD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + + Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPETQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGIPLAKIAAR 873 >gi|225856936|ref|YP_002738447.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae P1031] gi|254813663|sp|C1CL09|CARB_STRZP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|225725308|gb|ACO21160.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae P1031] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|148985175|ref|ZP_01818414.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP3-BS71] gi|147922620|gb|EDK73738.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP3-BS71] gi|301800188|emb|CBW32796.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae OXC141] Length = 1058 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|294085796|ref|YP_003552556.1| carbamoylphosphate synthase large subunit [Candidatus Puniceispirillum marinum IMCC1322] gi|292665371|gb|ADE40472.1| Carbamoylphosphate synthase large subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 1093 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G+++ + D D +V ++ +PD Sbjct: 29 SGAQACKALKSDGYRIILVNSNPATIMTDPDMADATYIEPITPATVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ ++ + + ++ D+ + + G+ + Sbjct: 89 TMGGQTALNTALSLYHDGTLDKYDVEMIGARTKSIEMAEDRELFRLAMQRIGLECARART 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 VN F + L P +I+P G + + + ++LIE+ Sbjct: 149 VNNFEDAAAALDFVGLPAIIRPSFTLGGEGGGIAYNKAEFEEIVRNGLRLSPVSEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D I + + + + Sbjct: 209 SLLGWKEFEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQNLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G S F P + +V +E+N P ++ S FP A Sbjct: 269 LAVLREIGVDTGGSNVQFAVCPNTGRVIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326 Query: 280 YAGYSFRELLLWM 292 AGY+ EL + Sbjct: 327 AAGYTLDELANDI 339 Score = 43.7 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 96/326 (29%), Gaps = 51/326 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ AL +AG++ I D D S Sbjct: 576 VVILGGGPN-------RIGQGIEFDYCCVHACYALSEAGYETIMINCNPETVSTDYDTSD 628 Query: 43 GLVLAHLKPDLAFNV----------------LHGNFGEDGLVQAILELLEIPYTHSGILA 86 L L + +V L G + I T + Sbjct: 629 RLYFEPLTDEDVISVIKRESENGTLAGVIVQLGGQTPLKIAAALETAGIPILGTSPDAID 688 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A ++ + P + P VI+P + V+ Sbjct: 689 LAEDRERFQQLLQKLDLLQPENGIAHSADEARAIVDRVGLPVVIRPSYVLGGRAMEVVHH 748 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + + + + +LI++++D +E+ + D + + + Sbjct: 749 LDDLERYMRDAVIVSGDNPVLIDRFLDHAVEVDVDALCDGTDVYIAGIMEHIEEAGIHSG 808 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + P + DI E++R A+G G+ F ++ LE+N + Sbjct: 809 ---DSACSLPPQNLSDDILAELRRQTTALAHALGVVGLMNIQFAIKGTD--IYLLEVNPR 863 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P +A G ++ Sbjct: 864 GSRT----VPFVAKTTGVPIAKIASR 885 >gi|291533192|emb|CBL06305.1| D-ala D-ala ligase N-terminus [Megamonas hypermegale ART12/1] Length = 79 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAH 48 + VLMGG SSE E+S +G A +AL++ G+ ++ V +++ + Sbjct: 6 IVVLMGGPSSEAEISRLTGTAILNALQEKGYNAVGMEFVPKTLVEDIKK 54 >gi|146418409|ref|XP_001485170.1| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC 6260] Length = 404 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 25/278 (8%) Query: 1 MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55 +A+ S+E SL SA L G + ID+D V + + +LK D+ Sbjct: 34 IAI----YSAEDAESL----HVLSADEAMLLPGVGAQAY-IDIDHVVSVAI-NLKADVVV 83 Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---IL 112 +G E A LE I + + K ++ + S VPV P I Sbjct: 84 PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLL 167 + I P ++K GG +G+ V ++ + + S +N+ L Sbjct: 143 DIAEAQLIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G + V G+ V + K + + L + K++ Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQRRHQKVIEEAPSPFVENGRTL-LRKQL 261 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 A ++ + +FL D + ++LE+N + Sbjct: 262 VTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNTR 299 >gi|16127130|ref|NP_421694.1| carbamoyl phosphate synthase large subunit [Caulobacter crescentus CB15] gi|221235930|ref|YP_002518367.1| carbamoyl phosphate synthase large subunit [Caulobacter crescentus NA1000] gi|22095525|sp|Q9A4D6|CARB_CAUCR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|13424518|gb|AAK24862.1| carbamoyl-phosphate synthase, large subunit [Caulobacter crescentus CB15] gi|220965103|gb|ACL96459.1| carbamoyl-phosphate synthase large chain [Caulobacter crescentus NA1000] Length = 1099 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D D V ++ +PD Sbjct: 29 SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPEMVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L + + + D+ + + + G+ S Sbjct: 89 TMGGQTALNTALALEADGTLAKFGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P +I+P + G + + + + + ++L+E+ Sbjct: 149 CHTLDEAMEGLEFVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 101/296 (34%), Gaps = 34/296 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--------- 66 AL+ G + + D D S L L + +LH + Sbjct: 596 ALDQIGVESIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLELLHVEMSKGTLAGVIVQFG 655 Query: 67 -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + LE +P + A L+ D+ R +Q+++ + + + + Sbjct: 656 GQTPLKLAHALEEAGVPILGTSPDAIDLAEDRERFQQLLNGLNIAQPENAIARSWDEARA 715 Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P+V++P G+ +I+ +++ + + + +L++ Y+ Sbjct: 716 EGDKIGFPFVMRPSYVLGGRGMEIIRDHEAMERYIAGAGEISLEHPILLDHYLS-RATEV 774 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V +A + +S ++ + P + + +E++R A+ Sbjct: 775 DVDALCDGKDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLKAETVEELKRQTVQMALALN 833 Query: 240 CRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 RG+ F + + +++ LE+N + T P +A G + + Sbjct: 834 VRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAAKI 885 >gi|296273014|ref|YP_003655645.1| carbamoyl-phosphate synthase large subunit [Arcobacter nitrofigilis DSM 7299] gi|296097188|gb|ADG93138.1| carbamoyl-phosphate synthase, large subunit [Arcobacter nitrofigilis DSM 7299] Length = 1079 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/300 (9%), Positives = 77/300 (25%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG L++ G++V I+ + + ++ D Sbjct: 29 SGTQATKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPITEDMIAKIIKKENIDAILP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + H + + +P + Sbjct: 89 TMGGQTALNVATTMYDKGMLDGVAFLGAHPDAIKKGEDRHLFNEAMIKIGMDLPKSANAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + I P + + + G V + + +++ I + + Sbjct: 149 SVEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKKLAEIGIEASPINEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRKDNCIIVCSIENLDPMGVHTGDSVTIAPALTLTDKEYQDMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 92/262 (35%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD ++H + L + L+ D Sbjct: 609 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTAAGAKIIGTTAEVIDLAED 665 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + + V G+ + + ++ I P +++P G+ ++ + Sbjct: 666 RKKFSKFVEDAGLLQPENGTAVEVTEAIEIAERIGYPVLVRPSFVLGGRGMKIVYSTNEL 725 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ S ++ +LI++++D IEL + D + + +S Sbjct: 726 RQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCICDGKEVYIGGIMQHIEEAG---VHSGD 782 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I ++ KE++ +G G+ + + +++ +E+N + T Sbjct: 783 SACSLPPVSISDELIKELETKTKNMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 840 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 841 ----VPFVSKATGMPLAKVATR 858 >gi|183602593|ref|ZP_02963958.1| CarB [Bifidobacterium animalis subsp. lactis HN019] gi|219683635|ref|YP_002470018.1| CarB [Bifidobacterium animalis subsp. lactis AD011] gi|241190667|ref|YP_002968061.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196073|ref|YP_002969628.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254813559|sp|B8DTW3|CARB_BIFA0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|183218234|gb|EDT88880.1| CarB [Bifidobacterium animalis subsp. lactis HN019] gi|219621285|gb|ACL29442.1| CarB [Bifidobacterium animalis subsp. lactis AD011] gi|240249059|gb|ACS45999.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250627|gb|ACS47566.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178405|gb|ADC85651.1| Carbamoyl-phosphate synthase large chain [Bifidobacterium animalis subsp. lactis BB-12] gi|295793656|gb|ADG33191.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis subsp. lactis V9] Length = 1136 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + + ++A +PD Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPEMADATYIDPISTPILEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V +L+ + + + A D+ K+VV G S Sbjct: 89 TLGGQTALNAAVALGEAGVLKKYNVELIGASLEAIDRGEDRESFKKVVKEAGAESARSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 P V++P LG + + + ++ D++LIE+ Sbjct: 149 AHTLEEVDAIAERFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGIHYSPTDEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + D + P + + + + + K Sbjct: 209 GIEGWKEYELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|319745061|gb|EFV97388.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae ATCC 13813] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPAIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|76788218|ref|YP_329753.1| carbamoyl phosphate synthase large subunit [Streptococcus agalactiae A909] gi|123601807|sp|Q3K150|CARB_STRA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|76563275|gb|ABA45859.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae A909] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|25011128|ref|NP_735523.1| carbamoyl phosphate synthase large subunit [Streptococcus agalactiae NEM316] gi|60389788|sp|Q8E5F5|CARB_STRA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|23095527|emb|CAD46736.1| Unknown [Streptococcus agalactiae NEM316] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|77414495|ref|ZP_00790643.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae 515] gi|77159445|gb|EAO70608.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae 515] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|77410551|ref|ZP_00786912.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae CJB111] gi|77163499|gb|EAO74449.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae CJB111] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|77406311|ref|ZP_00783376.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae H36B] gi|77175087|gb|EAO77891.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae H36B] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 88/280 (31%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLISKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTXSXTIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|22537201|ref|NP_688052.1| carbamoyl phosphate synthase large subunit [Streptococcus agalactiae 2603V/R] gi|76798077|ref|ZP_00780333.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae 18RS21] gi|60389784|sp|Q8DZQ7|CARB_STRA5 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|22534066|gb|AAM99924.1|AE014239_16 carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae 2603V/R] gi|76586582|gb|EAO63084.1| carbamoyl-phosphate synthase, large subunit [Streptococcus agalactiae 18RS21] Length = 1060 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG +L++ G++V ++ D+ + +L +PD Sbjct: 29 SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ T + A D + + +P Sbjct: 89 TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + + Q LIE+ Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + + ++ Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ ++GF+ ++ + V V+ KP+ G Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A + + + + P + +++ Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +LI+ Y+ G E + Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGQNILIPGIMEHIERSG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 + F+ +KV+ +E+N P ++ V+ P Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853 >gi|300853641|ref|YP_003778625.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii DSM 13528] gi|300433756|gb|ADK13523.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii DSM 13528] Length = 1068 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 88/292 (30%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C L + + D+ V ++ KP G Sbjct: 580 CIKTLRKLNIETIIVNNNPETVSTDFDISDKLYFEPITEEDVLSIIDKEKPYGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K + P + ++ Sbjct: 640 ETAIKLAEFLKEKNIVTLGTTADQIDEAEDREKFDDLLERLNISRPKGKGVWSVEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 ARRLEFPVLVRPSYVLGGQGMEITYDEKELTYYLSMAFKKDRKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239 + D + P + S +S + P++ D K+ IG Sbjct: 760 AICDGEDVLI----PGIMEHLERAGIHSGDSITMYPSQNISDEMKKKILDYTEKLATGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ F+ ++ +E+N + T P ++ +G ++ Sbjct: 816 IKGMINIQFI--EYKGNLYVIEVNPRASRT----VPYISKVSGVPIVDIATR 861 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 97/318 (30%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G +V I+ + V V+ +PD Sbjct: 29 SGTQACESLREEGLEVVLINSNPATIMTDREVADKVYIEPLTVEFVEKVIKKERPDSLLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + ILE + + I A D+ R + V Sbjct: 89 GMGGQTALNLTVELYEKKILEKYNVNIIGTSIEAIKKGEDRELFRDTMNKINQPVVESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +++P G + + ++ + L + Q+L+E+ Sbjct: 149 ITDMESGKKFANRIGYPVIVRPAYTLGGTGGGIAENEEQLETILESGLELSSIGQVLLER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S + ++ + + Y+ ++ Sbjct: 209 SIKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLDIINAVGIEGGCNVQLALNPKSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +++A + Sbjct: 324 KIALGYGLDEIKNAVTKK 341 >gi|261415243|ref|YP_003248926.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371699|gb|ACX74444.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328156|gb|ADL27357.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1072 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+K+ ++ + + + ++ +P Sbjct: 28 SGTQACKALREQGYKIVLVNSNPATIMTDPVMADATYIEPLNVARLTQIIEKERPQALLP 87 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G +L+ + + A D+ K+ + G+ S + Sbjct: 88 NLGGQTGLNLASALSKAGVLDKYGVKVIGVNLDAIERGEDREIFKETMQKLGIDTPRSGI 147 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + + Q LIE+ Sbjct: 148 CHSVEEAEKIVAEIGYPVVVRPAYTMGGAGGGFCYNVEELRTICSNGLELSMTHQCLIEE 207 Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E V+ D+ + I ++ S + L I + +E++ Sbjct: 208 SILGWEELEVEVVRDSKNQMIAICFIENIDPVGVHTGDSFCAAPFL--TIDKKLEEELKE 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 AF ++IG G + F DP + +V +EIN + T S + G+ Sbjct: 266 KAFKIVESIGVIGGTNVQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 318 Score = 36.8 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 93/295 (31%), Gaps = 32/295 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNFGED 65 AL + G++ + D D S L + + + H Sbjct: 580 ALREMGYETIMVNCNPETVSTDYDTSDKLYFEPVSLEDVLQIYHKEKPAGVIVQFGGQTP 639 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125 + L + + I + ++ D+ ++++ G+P+ S + + Sbjct: 640 LNIARALSDEGVKILGTSIDSIDIAEDRDLFRKMMDQLGIPMPESGMATNIDEALACVKQ 699 Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 P +I+P G+ VI + + + ++ LLI++++ Sbjct: 700 IGGYPVMIRPSFVLGGRGMEVIYDEAMLREYVAKAVGVTPDRPLLIDRFL---HNALECE 756 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCR 241 DA D + +P + S +S ++P ++ +A+ Sbjct: 757 ADALSDGEHVYIPSVMEHVELAGVHSGDSACIIPPVTITKENLATIKDYTRKIAEALHVC 816 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 G+ + KVF LE N + T P ++ L ++ A Sbjct: 817 GLMNMQYAI--EDGKVFVLEANPRASRT----VPLVSKVCNTQMARLATRLMLGA 865 >gi|15669568|ref|NP_248381.1| carbamoyl-phosphate synthase subunit CarB1 [Methanocaldococcus jannaschii DSM 2661] gi|22095496|sp|Q58773|CARB1_METJA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal section; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|2826402|gb|AAB99385.1| carbamoyl-phosphate synthase, medium subunit (carB1) [Methanocaldococcus jannaschii DSM 2661] Length = 482 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G ++ + + V ++ +PD Sbjct: 26 SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + IL+ I S I ++ D+ + V C + Sbjct: 86 TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 145 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + ++ +Q+LI++ Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205 Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + + + + + ++ LP + + Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G F + + +E+N P ++ S + GY Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314 >gi|329117301|ref|ZP_08246018.1| carbamoyl-phosphate synthase, large subunit [Streptococcus parauberis NCFD 2020] gi|326907706|gb|EGE54620.1| carbamoyl-phosphate synthase, large subunit [Streptococcus parauberis NCFD 2020] Length = 1058 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ KP G Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSISDKLYFEPLAFEDVMNVIDLEKPKGVLVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + + I T L A + D + P + + Sbjct: 639 SINLAEKLANAGVTILGTQVEDLDRAENRDLFEKVLKELNIPQPPGQTATNEDEAIQVAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ Q + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKQDLQSYMRTAVKASPEHPVLVDSYIIGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P K+ + ++ + C G Sbjct: 759 SDGKHVLIPGIMEHIERAG---VHSGDSMAVYPPQKLSPIVIDKIVDYTEKLAIGLKCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + F+ V+ +E+N + T P ++ G L + Sbjct: 816 MMNIQFVI--KGETVYVIEVNPRASRT----VPFLSKVTGIPMANLATKL 859 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G++V ++ D+ + ++ +PD Sbjct: 30 GTQACLALKEEGYQVVLVNSNPATIMTDKDIADKVYIEPLTLEFVSRIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +Q +E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMQLSKSGILKELDVELLGTKLSSIDQAEDRDLFKQLMEELGQPIPESKIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVDQAVDFAAKIGFPIIVRPAFTLGGTGGGMCANEEQLREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + V + + ++ + + + ++ + Sbjct: 210 IAG-YKEIEYEVIRDGADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPKSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|295401640|ref|ZP_06811607.1| carbamoyl-phosphate synthase, large subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294976260|gb|EFG51871.1| carbamoyl-phosphate synthase, large subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 1041 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + SV ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 ITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLAESPITQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-YKEIEYEVMRDNTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRAS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ ++ + V V+ + Sbjct: 577 SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ Sbjct: 636 QFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + I P +++P G+ ++K +Q + L Q LLI+ Y+DG E Sbjct: 696 LVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLRALLEQGMIAY---PLLIDAYLDGKE 752 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235 V D + + +P + + S +S VLP I + ++ A Sbjct: 753 AEVDVAADGNDML----LPTIIEHVEKAGVHSGDSYAVLPAQTIANEEQSKIITYARKIV 808 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + +GI ++ + +V+ LE+N + T P ++ G ++ ++ Sbjct: 809 KKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPLAQIATKLL 860 >gi|2127793|pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.-) - Methanococcus jannaschii Length = 487 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G ++ + + V ++ +PD Sbjct: 31 SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 90 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + IL+ I S I ++ D+ + V C + Sbjct: 91 TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 150 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + + + + ++ +Q+LI++ Sbjct: 151 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 210 Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 V G + + + + + ++ LP + + Sbjct: 211 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 268 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + +G G F + + +E+N P ++ S + GY Sbjct: 269 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 319 >gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8] gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8] Length = 1351 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C AL++ G+ V ++ D V ++ KP G Sbjct: 577 CVWALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTDEDVMNIIRVEKPAGVVVAFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 ++I T + +A ++ P +++ ++ Sbjct: 637 QTAIKLTKHLNENGVKILGTPPDSIDAAEDRERFDELLEELHIKRPEGFTVMTCEEALEV 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P +I+ + I + + +LI++Y+ GIEL Sbjct: 697 ADRIGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEID 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + + + +V + ++ Sbjct: 757 AICDGEDILIPGIMEHIERTGIHSG---DSIAVYPAWNVSDRLIDKVVDCSKRLALSLKT 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ +L +++ +E+N + T P ++ G +L Sbjct: 814 KGLVNIQYLI--YEDELYVIEVNPRSSRT----IPYISKVTGVPMVDLATK 858 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 34/303 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL+ G +V I+ + +V V+ +PD + Sbjct: 30 GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRVIIKERPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G +Q LE + + + D+ K + S G P PS +V Sbjct: 90 LGGQTGLTLSMQLAKEGFLEKYNVKLLGANPETIDKAEDRQLFKDTMESIGQPCIPSKVV 149 Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N I P +I+P G ++ ++ + + Q+L+E Sbjct: 150 NTVEDAVAFANEEGIGYPLIIRPAFTLGGTGGGIVNNEEELIEITRNGLYLSPITQVLVE 209 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S +F ++ + + Y+ ++ Sbjct: 210 KCIAGWKEIEFEVMRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRS 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + G F +P + + +E+N P ++ S + GY ++ Sbjct: 269 AALKIIDTLKVEGGCNCQFALNPETFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVA 324 Query: 290 LWM 292 + Sbjct: 325 AQI 327 >gi|307611502|emb|CBX01176.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila 130b] Length = 1067 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +L + + A + D+ + +Q++ G+ + S + Sbjct: 89 TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + ++ + +LLI++ Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL AG++ + D D V ++A +P+ Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAIEQPEGVIVHY 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T S + A ++ + P ++ + Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + I P V++P + ++ +++ + L + ++ +L++++ D IE+ Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + ++ + P + + + +++ Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F ++ LE+N + T P ++ G ++ Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861 >gi|52842831|ref|YP_096630.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629942|gb|AAU28683.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1067 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +L + + A + D+ + +Q++ G+ + S + Sbjct: 89 TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + ++ + +LLI++ Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL AG++ + D D V ++A +P+ Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T S + A ++ + P ++ + Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + I P V++P + ++ +++ + L + ++ +L++++ D IE+ Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + ++ + P + + + +++ Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F ++ LE+N + T P ++ G ++ Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861 >gi|54295464|ref|YP_127879.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila str. Lens] gi|53755296|emb|CAH16790.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila str. Lens] Length = 1067 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +L + + A + D+ + +Q++ G+ + S + Sbjct: 89 TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + ++ + +LLI++ Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL AG++ + D D V ++A +P+ Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAIEQPEGVIVHY 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T S + A ++ + P ++ + Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + I P V++P + ++ +++ + L + ++ +L++++ D IE+ Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + ++ + P + + + +++ Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F ++ LE+N + T P ++ G ++ Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861 >gi|328472010|gb|EGF42887.1| carbamoyl phosphate synthase large subunit [Vibrio parahaemolyticus 10329] Length = 1090 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 38/315 (12%), Positives = 92/315 (29%), Gaps = 44/315 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G ++ L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148 Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ----- 165 TM+ + + P +I+P G + + + + ++ Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEIWGIAYNKEEFEEICRRG 208 Query: 166 -LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP------AK 218 L I+ + + ++V + + Sbjct: 209 LDLSPTNELLIDESLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQT 268 Query: 219 IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 + Y+ ++ + + IG G S F +P ++ +E+N P ++ S Sbjct: 269 LTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALA 324 Query: 278 AAYAGYSFRELLLWM 292 + G+ ++ + Sbjct: 325 SKATGFPIAKIAAKL 339 Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V + KP G Sbjct: 600 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 659 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ ++ P ++ ++ Sbjct: 660 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTAMEQAVEKSRE 719 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ +Q + ++ S ++ +L+++++D V Sbjct: 720 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 776 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + + + + S +S LPA +I +++ +G RG Sbjct: 777 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 836 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + F +V+ +E+N + T P ++ G ++ Sbjct: 837 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 879 >gi|288930712|ref|YP_003434772.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus DSM 10642] gi|288892960|gb|ADC64497.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus DSM 10642] Length = 1081 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ PD Sbjct: 29 SGSQACKALREEGYEVVLVNSNPATIMTDPEMADKTYIEPLTPEVVAKIIERETPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +L+ + + + A + D+ K+ + + G+ V S + Sbjct: 89 TLGGQTALNIAVKLHEMGVLDKYGVELIGANVDAIKKAEDRDLFKKAMENIGLEVPRSEI 148 Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G + + + + + + Q+LIE+ Sbjct: 149 AESVSDALTIAEELGYPVVVRPAFTLGGTGGGIAYNREELKEIVRKGLELSMIHQVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVIGWKEFELEVMRDKADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDYEYQRLRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P S + +E+N P ++ S + GY ++ Sbjct: 269 IAIIREIGVETGGSNIQFAVHPSSDRFLAIEMN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 32/291 (10%) Query: 20 KACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58 A S L++ G++ ++ V + + KP+ Sbjct: 585 HAVYS-LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVLVQF 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + Q +I T + A + P Sbjct: 644 GGQTPLNIAKQLEESGAKILGTSVDSIDIAEDRKRFAEICRKLGIPQPENGIAFSVEEAK 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + I P +++P + ++ ++++ + ++ + +LI+++ D IE+ Sbjct: 704 EVAKKIGYPVLVRPSYVLGGRAMEIVYDEETLERYIREALEVSPEKPILIDKFLEDAIEV 763 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + +S ++ + P + ++ ++ Sbjct: 764 EVDAVCDGEEVLIGGIMEHIEEAG---VHSGDSACVLPPQSLSKEVIDKIIDYTRKLALE 820 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + G+ + +V+ LE N + T P ++ G ++ Sbjct: 821 LKVIGLINVQYAV--KDNEVYILEANPRASRT----VPFVSKATGIPLAKI 865 >gi|189499508|ref|YP_001958978.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium phaeobacteroides BS1] gi|189494949|gb|ACE03497.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium phaeobacteroides BS1] Length = 495 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D++ V ++ KPD Sbjct: 29 SGTQACRALKEEGYRVVLVNSNPATIMTDIEFADSTYIEPITPEYVQKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V +LE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVSLAESGVLERNGVELIGAKLRAIRKAENREFFSDAMKKLGLDMAKGFF 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAKEALEDIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQLLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IRIIREIGVETGGSNIQFAINPEDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|189346010|ref|YP_001942539.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium limicola DSM 245] gi|189340157|gb|ACD89560.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium limicola DSM 245] Length = 495 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D++ V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVILVNSNPATIMTDIEMADATYIEPITPEYVRKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVTLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAREALEEIGLPIVIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPISEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + Sbjct: 209 CLVGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQVLRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IRIIREIGVETGGSNIQFAINPENGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|256847340|ref|ZP_05552786.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus coleohominis 101-4-CHN] gi|256716004|gb|EEU30979.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus coleohominis 101-4-CHN] Length = 1058 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------G 60 C A++ G++ + D S+ L L + NV G Sbjct: 577 CVKAIQRHGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEQPAGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L +A PV + + + + Sbjct: 637 QTAINLAAGLDQHGIKILGTSVQDLDAAEDRRVFDQVIKDLQLKQPVGLTATTHEGVIAA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + L +++ +LI+ Y++G E Sbjct: 697 ATKIGYPVLVRPSYVLGGKAMEIVYNETELEQYLQDNANVAADHPILIDAYLEGRECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + +S + P DI +++ A+ C Sbjct: 757 AICDGTDVLLPGIMEHIERAG---VHSGDSMAVYPPQSFDQDIKQQIVDATKKLCLALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + + + LE+N + T P ++ G ++ ++ Sbjct: 814 IGIMNIQFII--HNHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++ ++ + SV ++ PD Sbjct: 29 SGTQACLALKEEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRQEYPDAILP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +++ T + A ++ + VP + Sbjct: 89 TLGGQIGLNLAVALAKTGLLDELGIQLLGTKLDSIDQAEDRERFKELMQQLHEPVPASQT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + H I P +++P G + D + + + Q LIE+ Sbjct: 149 VSTVDEALAFAHQIGYPVIVRPAFTMGGTGGGMCHDDDEMKIIAANGLDLSPVTQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDAKDDAMVVCCMENFDPVGIHTGDSIVFAPNQTLSDREYQMLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G DP S +E+N P ++ S + GY ++ Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|188588895|ref|YP_001919509.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum E3 str. Alaska E43] gi|226700924|sp|B2UX86|CARB_CLOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|188499176|gb|ACD52312.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum E3 str. Alaska E43] Length = 1069 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V I+ + + V+A KPD Sbjct: 29 SGTQACEALKSEGVEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKVIAKEKPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G G + V+ L+ + + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D + I P +++P G + ++ + L + Q+L+E+ Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+G G F +P + + +EIN P ++ S + GY +L Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 95/300 (31%), Gaps = 32/300 (10%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ + + D+ V ++ P G Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++ T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + + +LI++Y+ G E+ Sbjct: 700 AERLGFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + D + P + S +S + P++ D I ++ AIG Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDKIKGKILEYTKKLALAIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 +G+ F+ ++ +E+N + T P ++ +G ++ ++ A Sbjct: 816 IKGMINIQFI--EFEGSLYVIEVNPRASRT----VPYISKVSGVPIVDIATQVMLGAKLN 869 >gi|149908713|ref|ZP_01897374.1| carbamoyl-phosphate synthase large subunit [Moritella sp. PE36] gi|149808255|gb|EDM68194.1| carbamoyl-phosphate synthase large subunit [Moritella sp. PE36] Length = 1072 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V ++ + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIEKERPDAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + + L E G A A+ + RS+ + + + Sbjct: 89 TMGGQTALNCALELDSKGVLAEFNVELIGATADAIDKAEDRSRFDKAMKAIGLETPRAGI 148 Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ + P +I+P G + + + +LLI++ Sbjct: 149 AHTLEEAKGVLAEVGFPCIIRPSFTMGGSGGGIAYNMEEFEDICTLGLDLSPTTELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 MAVLREIGVETGGSNVQFGINPADGRMVIIEMN--PRVSRSS--ALASKATGFPIARIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 33/294 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPKGVIVQY 641 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T + + ++ + P ++ + Sbjct: 642 GGQTPLKLARELEAAGVPIIGTSPDAIDRSEDRERFQQAVERLGLLQPDNATVTTTEQAV 701 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177 S I P V++P + ++ + + ++ S ++ +L+++++D IEL Sbjct: 702 ISAEGIGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFKEAVSVSNESPVLLDRFLDNAIEL 761 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D V + + +S + + P + +I ++ Sbjct: 762 DVDAICDGKDVVIGGIMEHIEQAG---VHSGDSGCSLPPHSLSPEILDVMRDQVRALALE 818 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G+ + F +V+ +E+N + T P ++ G ++ Sbjct: 819 LGVIGLMNTQFAV--KDNEVYLIEVNPRAART----IPFVSKATGVQLAKIAAR 866 >gi|149007057|ref|ZP_01830726.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae SP18-BS74] gi|307127134|ref|YP_003879165.1| carbamoyl-phosphate synthase large subunit [Streptococcus pneumoniae 670-6B] gi|147761361|gb|EDK68327.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae SP18-BS74] gi|306484196|gb|ADM91065.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae 670-6B] gi|332074609|gb|EGI85083.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA17545] Length = 1058 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ S ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNISMAQVATKLI 860 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|83747767|ref|ZP_00944801.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum UW551] gi|83725539|gb|EAP72683.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum UW551] Length = 1038 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ + D D V ++ KP G Sbjct: 549 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 608 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T ++ +A ++ + P + + Sbjct: 609 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 668 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + + ++ ++ +L++++ D IE + Sbjct: 669 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 728 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + E++R +A+ G Sbjct: 729 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 785 Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G S ++ Sbjct: 786 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 832 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 82/276 (29%), Gaps = 19/276 (6%) Query: 32 KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGIL 85 V+ I+ V ++A +PD + G D +L+ + + Sbjct: 19 DVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLQKYNVELIGASPE 78 Query: 86 ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGG 136 A + D+ + K ++ G+ S + + P VI+P Sbjct: 79 AIDKAEDRQKFKDAMTKIGLGSAKSGIAHSLEEALAVQAQIARETGTSGYPIVIRPSFTL 138 Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196 G + + + + ++LLIE+ + G + + D I Sbjct: 139 GGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKEYEMEVVRDKKDNCIIVCSI 198 Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 + + + + + + G S F +P + Sbjct: 199 ENLDPMGIHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGR 258 Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +E+N P ++ S + G+ ++ + Sbjct: 259 MIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 290 >gi|220907713|ref|YP_002483024.1| urea carboxylase [Cyanothece sp. PCC 7425] gi|219864324|gb|ACL44663.1| urea carboxylase [Cyanothece sp. PCC 7425] Length = 1209 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 94/312 (30%), Gaps = 47/312 (15%) Query: 22 CASALEDAGF--------------------KVSQIDVDRSVGLVLAHLKP-DLAF----N 56 +L+ G + + L + D+A Sbjct: 17 VLRSLDRLGIASVVVYSEADATAPHVLQAKEAVCLGPAPVGESYLRGDRILDIALQTGAE 76 Query: 57 VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110 +H G E+ + E I + K ++ + GVP+ P Sbjct: 77 AIHPGYGFLSENVEFASRCEQQGIAFIGPTPEQIRAFGLKHTARALAEQQGVPLVPGTDL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ V + + + + + + Sbjct: 137 LDTLVEAQTAARAIGYPVMLKSTAGGGGIGMQVCRDEAELIAGYEKVQRLSQTNFKQRGV 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 Y++ T + + V + + PA + + + + Sbjct: 197 YLEKYLQTARHIEVQIFGDGQGQVVALGERDCSTQRRNQKVIEETPAPGISEALRQALYS 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 A +A+ R +F+ D S + ++LE+N + G+T A G Sbjct: 257 AAIRLGKAVNYRSAGTVEFILDVESEQFYFLEVNTRLQVEHGITE--------AVTGL-- 306 Query: 286 RELLLWMVEDAS 297 +L+ WM+ A+ Sbjct: 307 -DLVEWMLRVAA 317 >gi|332981995|ref|YP_004463436.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis 50-1 BON] gi|332699673|gb|AEE96614.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis 50-1 BON] Length = 1080 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 97/294 (32%), Gaps = 32/294 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------G 60 C AL +AG+ I D D S L L + NVL G Sbjct: 580 CVWALREAGYGTIIINNNPETVSTDFDTSDRLYFEPLTAEDVANVLEAEQPLGVVVQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + I T + A ++ + P ++ + MD+ Sbjct: 640 QTAIKLTKPVADMGMPIIGTQPLYIDMAEDREEFDKLLNELNIPRPAGATVFTVQEAMDA 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + D+ I + + +L+++Y+ G EL Sbjct: 700 ANKLGYPVLVRPSYVLGGQGMEIAHSDKDIEEYIGIVNRVKQEHPILVDKYLMGKELEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239 + D + P + S +S V PA+ ++++ + +A+ Sbjct: 760 AICDGQDILI----PGIMEHVERAGVHSGDSISVYPAQNISAKHQDIIVDYTYKLAKALH 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ + V+ +E+N + T P ++ G L V Sbjct: 816 VIGLVNIQFIV--YNDDVYIIEVNPRSSRT----VPYISKVTGIPMVNLATRAV 863 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/301 (10%), Positives = 81/301 (26%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL+ G + ++ + + + ++ PD Sbjct: 30 GTQACQALKAEGIETVLVNSNPATIMTDTNMADNVYIEPLTVDMIEAIIQREHPDSLLPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G +++ T + + A + R + Sbjct: 90 LGGQTGLNLAMELAEKGILDKYNIKLLGTSAQSIRKAEDREAFRETMKAIGEPIVDNVIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +++P G + + + + + Q+++E Sbjct: 150 NDLDTALAFARKVGYPVIVRPAYTLGGTGGGIARDEYELRRIASDGLRLSRVHQVIVEPS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + ++ + + Y+ ++ + Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G F DP S F +E+N P ++ S + GY + Sbjct: 269 INIINALEIEGGCNVQFALDPNSMDYFVIEVN--PRVSRSS--ALASKATGYPIARVATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|325848841|ref|ZP_08170351.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480485|gb|EGC83547.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1069 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 AL + G + I D D V ++ PD G Sbjct: 578 AIKALINMGIETITINNNPETVSTDFDTSDKLYFEPLSQEDVLDIIEKENPDGVILAFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + I T ++ A +K + + P + + Sbjct: 638 QTAIKLAKDLHEHKINIIGTGFDVIDRAEDREKFEALLEKLNIKRPKGYGVKSLEQGLKV 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +I+P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 698 AKDLGYPVLIRPSYVLGGQGMEITYDEERLKQYLKAAFKRDKENPVLIDKYLIGREIEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + D + P + S +ST + P+ D I +++ + + + Sbjct: 758 AISDGDNILI----PGIMEHLERAGVHSGDSTSIYPSINISDQIKEKIYQETLKIAKELK 813 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 814 VKGMINIQFI--EYQDDIYIIEVNPRASRTVPYISKVSTVP 852 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L+ G + I D + +V ++ +PD Sbjct: 29 SGTQACETLKSLGVETVLINSNPATIMTDPNLADRTYIEAINFETVVKIIEKERPDSIIA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + IL+ I + I A D+ R + Sbjct: 89 TMGGQTSLNMTLKLYEEGILDKYNIKIIGTDIEAIKKGEDRELFRKTMKEIGQPIVSSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P VI+P G D+ + L S + + LIE+ Sbjct: 149 ARSLDQGLKIAQKIGYPLVIRPAYTLGGSGGGFANNDEELKEVLSLGLSLSPVSECLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G L + +I V + ++ + + + ++++ Sbjct: 209 SIKGW-LEIEFEVLRDNEGKKIVVCDMENVDPVGVHTGDSIVVAPCQSLEKESVNKLKQA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +AIG +G ++ + + +EIN P ++ S + GY + Sbjct: 268 SLDIVEAIGVKGACNVQLAYNKENDEYAVIEIN--PRVSRSS--ALASKAVGYPIARIAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|218295540|ref|ZP_03496353.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus Y51MC23] gi|218244172|gb|EED10698.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus Y51MC23] Length = 1030 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL AG++ + D D ++ V+A PD Sbjct: 29 SGTQAVKALRGAGYEAILVNSNPATIMTDPDLAERTYVEPLTLEALEKVIAKEAPDALLP 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + +E+ ++ + + + VP Sbjct: 89 TLGGQTALNLSMALHEEGILKRYGVELIGANAEAIKKGEDREAFQKAMRKIGLEVPRGKM 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G + K + + L + + + L+E+ Sbjct: 149 VASVEEGLHFAREVGYPVVVRPSFTLGGTGGGIAKDEGELKEVLARGLALSPVHTALVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + ++ + Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDVEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP + + +E+N P ++ S + G+ ++ Sbjct: 269 KAVIREIGVDTGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322 Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 28/289 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG++ + D D V ++ H KP L G Sbjct: 583 ALKEAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPLGVIATLGGQTP 642 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 +++ T + A + P ++ Sbjct: 643 LKLAQGLEEAGVKLLGTPFQAIHQAEDREAFHRLCQRLGIPQPEGRVAKSPEEALELAKE 702 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P + +P + V+K + + L + ++ L V Sbjct: 703 VGFPLLARPSYVLGGRAMRVLKSQEELKRYLEEVYGPLQEKPSILLDRYLEGALELDVDA 762 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + IA +S ++T + P + + ++V+ A+G RG+ Sbjct: 763 LSDGEEVMIAGVMEH-VERAGVHSGDSATVLPPVHLSQEALEKVRAYTRRLALALGVRGL 821 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +V+ LE N + T P ++ G +L + Sbjct: 822 LNVQYAVL--GEEVYILEANPRASRT----VPFVSKAIGVPLAKLAALI 864 >gi|91202515|emb|CAJ72154.1| strongly similar to pyruvate carboxylase [Candidatus Kuenenia stuttgartiensis] Length = 1149 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 15/244 (6%) Query: 32 KVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 + +D + LA K D +G E+ E I + L Sbjct: 60 DPVKAYLDIEGIIQLAKDKGIDAIHPG-YGFLSENAGFARACEKAGIVFIGPRSEILELL 118 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKK 146 +K+ ++Q+ VP+ D P +IK GG G+ ++ Sbjct: 119 GNKISARQIAGQAQVPILSGNKYPIRHPDEAKAFCREVGYPVIIKAANGGGGRGMRIVLG 178 Query: 147 DQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201 + + L + +++ + + + + + ++GD ++ + Sbjct: 179 ESELVGRLNEAQRESMTAFGYDECFIEKYIEKARHIEVQILGDKHKNIVHLYERDCTLQR 238 Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261 K + L A + DI A +++ +FL D +++E Sbjct: 239 RHQKVVEIAPAQHLDASVRQDICN----AAVKICKSVNYDNAGTVEFLLDTEKNTFYFIE 294 Query: 262 INVQ 265 IN + Sbjct: 295 INPR 298 >gi|188996965|ref|YP_001931216.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] gi|188932032|gb|ACD66662.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sulfurihydrogenibium sp. YO3AOP1] Length = 476 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 102/314 (32%), Gaps = 48/314 (15%) Query: 19 GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54 A ++ G K I + L + + DLA Sbjct: 17 ATRIIRACKELGIKTVAIYSEADAKSIYVKKADEAYLIPGDPIQAYLNYFRIVDLAKQTK 76 Query: 55 FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110 + +H G E+ I + AL DKM +K+ + GVP+ P Sbjct: 77 CDAIHPGYGFLSENPEFAEYCVRQGIIFIGPKPEHIALFGDKMAAKKKMRELGVPILPGS 136 Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162 I + + + I P ++K GG G+ +++ + + + Sbjct: 137 DEPISDMKKAKEIANEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGK 196 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 GD + + + + +M D +V + + + + Sbjct: 197 GDVFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQ----RRHQKIVEIARSPSLDEE 252 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + KE+ R + A +G + ++L D + +++E+N + + EM G Sbjct: 253 VKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNTR--LQVEHTVTEM--VTG 307 Query: 283 YSFRELLLWMVEDA 296 +++ M+E A Sbjct: 308 I---DIVQKMIEIA 318 >gi|290580681|ref|YP_003485073.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans NN2025] gi|254997580|dbj|BAH88181.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans NN2025] Length = 1059 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NSVDEAVAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 30/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ +P G Sbjct: 579 KAIQNAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D + P + + S Sbjct: 639 AINLAEPLSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAIVSAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + F+ V+ +E+N + T P ++ ++ ++ +S Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQIATKLILGSS 864 >gi|170782387|ref|YP_001710720.1| carbamoylphosphate synthetase large chain [Clavibacter michiganensis subsp. sepedonicus] gi|189081826|sp|B0REV9|CARB_CLAMS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|169156956|emb|CAQ02125.1| carbamoylphosphate synthetase large chain [Clavibacter michiganensis subsp. sepedonicus] Length = 1096 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG L + G +V + D + ++ +PD Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPGFADATYIEPITSEVLEKIIIKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G + ++ L + + + A D+ K +V V Sbjct: 89 TLGGQTALNAAIRLDELGILAKHGVELIGAKVEAIQKGEDRQLFKDLVIESGADVARSHV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P VI+P LG Q + + + ++L+E+ Sbjct: 149 AKTLEQAVEFAEDLGYPLVIRPSFTMGGLGSGFAHTRQELERMVADGLQSSPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D T + + + + + Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQHMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IDIIRRVGVDTGGCNIQFAVDPTNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|163857856|ref|YP_001632154.1| carbamoyl phosphate synthase large subunit [Bordetella petrii DSM 12804] gi|163261584|emb|CAP43886.1| carbamoyl-phosphate synthase large chain [Bordetella petrii] Length = 1080 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ KPD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D Q +L + + A + D+ + KQ ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHQGVLAKHNVELIGANEQAIEKAEDRQKFKQAMTDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHSMDEAWEVQRRIAAETGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 +LLIE+ + G + + D I + + + + Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPDNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + VL GG + G+ A AL + G++ + D D S Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++H G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + P + + I P V++P + ++ + Q + Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAADIGYPLVVRPSYVLGGRAMEIVHEQQDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ + E+ + D + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + ++ E++R + +A+ G+ F V+ LE+N + T Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMARALNVNGLMNVQFAI--QGGDVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 P ++ G L + A R Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|24379315|ref|NP_721270.1| carbamoyl phosphate synthase large subunit [Streptococcus mutans UA159] gi|81845295|sp|Q8DUP3|CARB_STRMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|24377237|gb|AAN58576.1|AE014927_5 carbamoylphosphate synthetase, large subunit [Streptococcus mutans UA159] Length = 1059 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NSVDEAVAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 30/295 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+++AG++ ++ + V V+ +P G Sbjct: 579 KAIQNAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D + P + + S Sbjct: 639 AINLAEPLSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAVASAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVESENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 + F+ V+ +E+N + T P ++ ++ ++ +S Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQIATKLILGSS 864 >gi|148358640|ref|YP_001249847.1| carbamoyl phosphate synthase large subunit [Legionella pneumophila str. Corby] gi|148280413|gb|ABQ54501.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila str. Corby] Length = 1049 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 11 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 70 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +L + + A + D+ + +Q++ G+ + S + Sbjct: 71 TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 130 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + ++ + +LLI++ Sbjct: 131 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTRELLIDE 190 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 191 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 250 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 251 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 306 Query: 291 WM 292 + Sbjct: 307 KL 308 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL AG++ + D D V ++A +P+ Sbjct: 562 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 621 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T S + A ++ + P ++ + Sbjct: 622 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 681 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + I P V++P + ++ +++ + L + ++ +L++++ D IE+ Sbjct: 682 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 741 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + ++ + P + + + +++ Sbjct: 742 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 798 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F ++ LE+N + T P ++ G ++ Sbjct: 799 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 843 >gi|54298614|ref|YP_124983.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila str. Paris] gi|296108270|ref|YP_003619971.1| carbamoyl-phosphate synthase large chain [Legionella pneumophila 2300/99 Alcoy] gi|53752399|emb|CAH13831.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila str. Paris] gi|295650172|gb|ADG26019.1| carbamoyl-phosphate synthase large chain [Legionella pneumophila 2300/99 Alcoy] Length = 1067 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++ +PD Sbjct: 29 SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D + + +L + + A + D+ + +Q++ G+ + S + Sbjct: 89 TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + Q + P +I+P G + + ++ + +LLI++ Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTRELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL AG++ + D D V ++A +P+ Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G ++I T S + A ++ + P ++ + Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177 + + I P V++P + ++ +++ + L + ++ +L++++ D IE+ Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + ++ + P + + + +++ Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G G+ + F ++ LE+N + T P ++ G ++ Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861 >gi|322391730|ref|ZP_08065197.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris ATCC 700780] gi|321145440|gb|EFX40834.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris ATCC 700780] Length = 1058 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q LIE+ Sbjct: 150 NTVEGAVAFAATIGYPVIVRPAFTLGGTGGGMCANEAELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAS 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + C G Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQDTIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|313889246|ref|ZP_07822900.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844800|gb|EFR32207.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1067 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 92/292 (31%), Gaps = 32/292 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 AL G + I D D V ++ KP G Sbjct: 578 AIKALIKMGIETITINNNPETVSTDFDTSDKLYFEPLTEEEVKSIIDTEKPMGVILAFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + I T + A +K P + + +++ Sbjct: 638 QTAIKLAKYLHEQKVNIFGTDFEDIDRAEDREKFDEMLEELKINRPKGHGVFTIKEGLET 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 +S P +++P G+ + + S+ L + + + +LI++Y+ G E+ Sbjct: 698 AKELSYPLLVRPSYVLGGQGMQITYDENSLMTYLKSAFERDAINPVLIDKYLVGREIEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P I +I ++ +A+ Sbjct: 758 AISDGEDVLI----PGIMEHLERAGVHSGDSITIYPSINISSEIKDKILDYTKKIAKALH 813 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ F+ ++ +E+N + T P ++ +G +L Sbjct: 814 VKGMINIQFI--EYKNDLYIIEVNPRASRT----VPYISKVSGVPIVDLATK 859 Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L++ G + ++ + + + ++ +PD Sbjct: 29 SGTQACETLKNNGVETVLVNSNPATIMTDKGVADKIYIEPITISFIEKIIEKERPDSLIA 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + ++ +++ T + D R + Sbjct: 89 GMGGQTGLNMTLELDKRGILDKYGIKVIGTDIDAIKKGEDRDIFRKTMQEIGEPIIESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G ++ + L S + ++ L+E+ Sbjct: 149 ATSLEEGKELAKKIGYPLVVRPAYTLGGTGGGFAYDEEELVEVLSHGLSLSPVNECLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + +I V + ++ + + D+ ++++ Sbjct: 209 SIRGW-MEIEFEVIRDSAGEKIIVCDMENVDPVGVHTGDSIVVAPCQSLDKDVLQKLKNS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G +P + +EIN P ++ S + GY + Sbjct: 268 ALNIVENVNVVGACNVQLALNPETLDYAVIEIN--PRVSRSS--ALASKATGYPIARIAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|309800594|ref|ZP_07694739.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis SK1302] gi|308115774|gb|EFO53305.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis SK1302] Length = 1058 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|288961257|ref|YP_003451596.1| urea carboxylase [Azospirillum sp. B510] gi|288913565|dbj|BAI75052.1| urea carboxylase [Azospirillum sp. B510] Length = 1228 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 16/179 (8%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +IK GG +G+ + ++ +++ S + + +++ + Sbjct: 150 IGYPVMIKSTAGGGGIGMQLCREPETLEPMFEAVSRLSRNNFKDGGVFLEKFIERARHIE 209 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242 + V + + PA I D+ +++ A +A+ + Sbjct: 210 VQIFGDGQGGVVALGERDCSAQRRNQKVIEETPAPGIGDDLRRKLFDAAERLGRAVNYQS 269 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +F++D + + ++LE+N + G+T G +L+ WM+ A+ Sbjct: 270 AGTVEFVYDEAAGEAYFLEVNTRLQVEHGVTE--------EVTGI---DLVEWMIRQAA 317 >gi|89098721|ref|ZP_01171603.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL B-14911] gi|89086683|gb|EAR65802.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL B-14911] Length = 1070 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V ++ +PD Sbjct: 30 GTQACIALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDAIVPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +E+ T + A D RS VP I Sbjct: 90 LGGQTGLNLAVELSKAGVLEECGVEVLGTKLSAIEKAEDRDLFRSLMNELGEPVPESEII 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q L+E+ Sbjct: 150 HNIDEALAFAEQIGYPVIVRPAFTLGGTGGGICHDEEELLEITASGLKNSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ ++ Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALEIEGGCNVQLALDPYSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ A G Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGAVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + ++I T L A DK P + Sbjct: 640 INLAAELVKRGVKILGTSLENLDRAEDRDKFEMALTDLGIPQPQGKTAFSAEDAAVIAAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ K++ + + + N +LI++Y+ G E+ + Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMKNAVRVNPEHPVLIDRYLTGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + ++ ++ + +G G+ Sbjct: 760 DGERVVIPGIMEHIERAG---VHSGDSIAVYPPQNLTDEVKAKLAEYTEKLAKGLGIIGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ +VF LE+N P ++ ++ P Sbjct: 817 LNIQYVV--AKGEVFVLEVNPRSSRTVPFLSKITNVPMA 853 >gi|87119094|ref|ZP_01074992.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121] gi|86165485|gb|EAQ66752.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121] Length = 1240 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 87/270 (32%), Gaps = 28/270 (10%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 + + + D +G E+ + E I + L K +++ Sbjct: 64 EKLIHIAKQHQVDAIHPG-YGFLSENTEFVSQCEQANIAFIGPTSAQMNLFGLKHLAREA 122 Query: 100 VSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GVP+ P + + + I P ++K GG +G+ + Sbjct: 123 AEKAGVPLVPGSPLLTKQEDAIQWANEIGYPIMLKSTAGGGGIGMQACFNQDEMVGAWES 182 Query: 157 -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + +++ L + + + + GD + K Sbjct: 183 VKRLGENYFSNDGVFLEKLIQNARHIEVQIFGDGQGQAISLGERDCSAQRRNQKVIEETP 242 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PG 267 H LP + +++ A ++ R +F+FD ++ ++LE+N + G Sbjct: 243 AHNLPH----AVREQLHHTAERLMASVNYRNAGTVEFIFDDDAKAFYFLEVNTRLQVEHG 298 Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +T A G +L+ M++ A+ Sbjct: 299 VTE--------AVWGV---DLVACMIKQAA 317 >gi|298675345|ref|YP_003727095.1| carbamoyl-phosphate synthase large subunit [Methanohalobium evestigatum Z-7303] gi|298288333|gb|ADI74299.1| carbamoyl-phosphate synthase, large subunit [Methanohalobium evestigatum Z-7303] Length = 1076 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 97/302 (32%), Gaps = 29/302 (9%) Query: 12 REVSLSSGKACASALEDAGFKVSQIDVD------------RSVGLVLAHLKPDLAFNVLH 59 VS S + S + + + D D V V+ +PD Sbjct: 574 HAVSAISEENIESHIINNNPETVSTDYDTSDKLFFEPLTLEDVMNVIEKEQPDGVLVQFG 633 Query: 60 GNFGEDGLVQAILELLEIPY-------THSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 G + + EL T + +A DK + P L Sbjct: 634 GQTSVNLSLPLQHELERRNDLKTKIFGTSPDKIDTAEDRDKFYALMKELGINQPDGRYAL 693 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P +++P + ++ ++ + L +S + + +LI+ ++ Sbjct: 694 SQGEAINFATEIGYPVLVRPSYVLGGRAMEIVYDEEELKRYLRESVCVSKDNPILIDDFL 753 Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 +G +E+ + D + + + +S ++ + P + + + V+ Sbjct: 754 EGAVEIDVDAVCDGENVLIGAIMEHIEEAG---VHSGDSACVIPPQSLTEETMEIVRDYT 810 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 ++ +G+ +V+ LE N + T P ++ G ++ Sbjct: 811 RKIALSLDVKGLINIQM--AKRDGEVYVLEANPRSSRT----IPFVSKAVGIPLAKIAAQ 864 Query: 292 MV 293 ++ Sbjct: 865 VI 866 Score = 52.6 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + R V ++ +PD Sbjct: 30 SGSQACRALREEGIEVVLVNSNPATIMTDPEMADSVYIEPLEPRVVEKIIERERPDGIIA 89 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G G + + LE + + + A + D+ K+ + VP + Sbjct: 90 GLGGQTGLNVTSELSDLGALEKYNVKLLGTPLDAITNTEDRELFKEKMGDIGEKVPQSKA 149 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + + + P +++P G + + + + + + Q+L+E+ Sbjct: 150 ISSLKEAEEMIDELGLPLIVRPAYTLGGAGGGIAHTKEQLFEIVERGLRRSRIHQVLVEE 209 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + T + + + + ++ + + + ++ ++ Sbjct: 210 SVLGWKEF-EYEVMRDSNDTCVIICNMENFDPMGIHTGESIVVTPSQTLSDEEHQMLRSS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A ++ G G F +E+N P ++ S + GY + Sbjct: 269 AINIIRSFGIEGGCNIQFAV--KDGDYRVVEVN--PRVSRSS--ALASKATGYPIARVTA 322 Query: 291 WM 292 + Sbjct: 323 KI 324 >gi|297622731|ref|YP_003704165.1| carbamoyl-phosphate synthase large subunit [Truepera radiovictrix DSM 17093] gi|297163911|gb|ADI13622.1| carbamoyl-phosphate synthase, large subunit [Truepera radiovictrix DSM 17093] Length = 1027 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 31/298 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL AGF+V I+ + V+A +PD Sbjct: 29 SGTQACKALRAAGFEVVLINANPATIMTDPEVADRTYIEPLTPEVAERVIAQERPDALLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +LE + + A D+ + + G+ + Sbjct: 89 TLGGQTALNLAKALYETGVLERYGVELIGANYEAINKGEDRELFQAAMRKIGIKTPAGKM 148 Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V +D I P +I+P G V + + + + +L+EQ Sbjct: 149 VGSLEEALDFVATIGYPAIIRPSFTLGGTGGGVAYDEAEFRQIVRRGLHDSPVHTVLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEYELEVMRDHNDTVVIICSIENVDPMGVHTGDSITVAPAQTLSDKEYQRLRDDA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F +P + +V +E+N P ++ S + GY ++ Sbjct: 269 IAIIREIGVDTGGSNIQFAVNPRNGEVMVIEMN--PRVSRSS--ALASKATGYPIAKI 322 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 31/289 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG++ I D D V V+ +P L G Sbjct: 580 ALKEAGYETIMINSNPETVSTDYDTADRLYFEPLTFEDVLNVIEREEPAGVIVQLGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + +A A D P + Sbjct: 640 LKLAAPLEAAGVPIWGTPARAIAEAEDRDAFHRLCARLGVPQPAGGVAQRPAEALTLAAS 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + V++ + ++ L + + G ++ V Sbjct: 700 LGYPLMVRPSFVLGGRAMQVVEDEGALERYLREVYAELPGSPSILLDAFVAGAQEVDVDA 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + +A +S ++ P + ++ + + +AIG RG+ Sbjct: 760 LADGERVVVAGIMEHIEG-AGVHSGDSACITPPVSLSDEVIATLHDYSTRLARAIGVRGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 F+ +V +E N + T P ++ G+ + L+ Sbjct: 819 INLQFVV--KGGEVLVIEANPRASRT----VPYLSKAIGHPLAKYAALI 861 >gi|170717932|ref|YP_001784982.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus 2336] gi|168826061|gb|ACA31432.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus 2336] Length = 414 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 82/308 (26%), Gaps = 38/308 (12%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK L+ G +V +D ++ ++ KPD + Sbjct: 45 GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRSYTISMLDGDALKALIEKEKPDYIVPEV 104 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + +P + L + + + + + Sbjct: 105 EAIATSTLVELEQAGFNVVPTAKATQLTMNREGIRRLAAEKLKLPT-SNYQFVDNFDDFQ 163 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P VIKP+ S G ++K + + G V+G Sbjct: 164 SAVENLGIPCVIKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 221 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 L V + P + + + Q +A + Sbjct: 222 D--YEITLLTVRHAEGTSFLAPIGHRQEKGDYRESWQPQAMSVQALAKAQHIAEKITTEL 279 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289 G RGI + V + E++ +P GM +S F A G E+ Sbjct: 280 GGRGIFGVEMFVCGDD--VIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 336 Query: 290 LWMVEDAS 297 ++ A+ Sbjct: 337 -NLISPAA 343 >gi|152966945|ref|YP_001362729.1| carbamoyl-phosphate synthase, large subunit [Kineococcus radiotolerans SRS30216] gi|189081829|sp|A6WCC6|CARB_KINRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|151361462|gb|ABS04465.1| carbamoyl-phosphate synthase, large subunit [Kineococcus radiotolerans SRS30216] Length = 1104 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L G +V ++ + + V ++A +PD Sbjct: 29 SGTQACRVLRAEGLRVILVNSNPATIMTDPEMADATYVEPITPAVVEAIIAKERPDAVLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +LE + + A L D+ K VV CG S L Sbjct: 89 TLGGQTALNTAIALYENGVLEKYGTELIGADVEAIKLGEDRQLFKGVVERCGAESARSHL 148 Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + + Q + ++L+E+ Sbjct: 149 CHSMEEVLAGAADLGYPVVVRPSFTMGGLGSGFAYDEADLRRIAGQGLHHSPVTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + +F + + + + Sbjct: 209 SILGWKEYELELMRDRADNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQRMRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 >gi|302670200|ref|YP_003830160.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio proteoclasticus B316] gi|302394673|gb|ADL33578.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio proteoclasticus B316] Length = 1088 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57 G +L++ G +V + D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVKVLEQIIEKEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ L+ + + + D+ K + G P S + Sbjct: 90 LGGQAGLNLGMELDESGFLKSHGVKLLGTTAETIRKAEDRQEFKDTMEKIGEPCAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + L + +++L+E+ Sbjct: 150 HNVEDGISFAGKIGYPVVLRPAFTLGGSGGGIAYNAAQCREILENGLRLSRANEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + SL + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSLGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLSDKEYQMLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIDELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 90/287 (31%), Gaps = 34/287 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++ I D D V ++ KPD A G Sbjct: 603 AFKNEGYETIIINNNPETVSTDFDIADKLYFEPLTAEDVENIVRLEKPDGAVVQFGGQ-- 660 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121 + L + + + + D+ Q++ + + + Sbjct: 661 TAIKLTQDLMKMGVKIYGTDAKDVDAAEDREIFDQILEETQIKRAQGATVYTAEEAKEVA 720 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P G+ + D+ I + + + +L+++Y+ G+E Sbjct: 721 NRLGYPVLVRPSYVLGGQGMQIALSDEEIEEFMNIINRYAQDHPILVDKYLQGVETEVDA 780 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + + + + + + + +A+ Sbjct: 781 VCDGEDIVIPGIMEHIERSGIHSG---DSISVYPAQSLSDKVKETIAEYTKRLAKALHVI 837 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 G+ F+ + +V+ +E N + T P ++ G +L Sbjct: 838 GLINVQFI--AVGDEVYIIEANPRSSRT----VPYISKVTGIPIVDL 878 >gi|299770714|ref|YP_003732740.1| urea carboxylase [Acinetobacter sp. DR1] gi|298700802|gb|ADI91367.1| urea carboxylase [Acinetobacter sp. DR1] Length = 1201 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LADEAEALTEATRIGYPVMLKSTAGGGGIGMRLVWNEVELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|253688770|ref|YP_003017960.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755348|gb|ACT13424.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1201 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + + +++ Sbjct: 147 AVAIGYPVMLKSTAGGGGIGMRVCYSATELSDAFETVKRLGQNNFSDAGVFIEKYIECAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V ++ + PA D + + A QA+ Sbjct: 207 HLEVQIFGDGQGDVLALGARDCSVQRRNQKVIEETPAPNLPDGVADALCAAAISLAQAVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D + + ++LE+N + G+T ++ G +L+ WM+E Sbjct: 267 YRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315 Query: 296 ASCL 299 A+ Sbjct: 316 AAGD 319 >gi|257437802|ref|ZP_05613557.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium prausnitzii A2-165] gi|257199725|gb|EEU98009.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium prausnitzii A2-165] Length = 1083 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G + + D D V +L KPD Sbjct: 29 SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILEIEKPDSVLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ L+ I + D+ + + Sbjct: 89 NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + + Q+L+E+ Sbjct: 149 VETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKEKLIEIGTNGLRLSPIHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + Y+ ++ Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +G G F P S +E+N P ++ S + GY ++ Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSYDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 10/250 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV ++A KPD G L I T + + A ++ Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158 ++ + + I P +++P +IV + + + + Sbjct: 686 RCKIPRAPGRTVFNLEEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L+++Y+ G E + D + + + + +S + Sbjct: 746 HVDMDHPVLLDKYIMGTECEVDAICDGENFLIPGIMEQVERTG---VHSGDSICVYPAQH 802 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + + G+ + + KV+ +E+N + T P ++ Sbjct: 803 LTQAEIDTMVDYTGRFARELHVTGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856 Query: 279 AYAGYSFREL 288 G +L Sbjct: 857 KVTGVPMVDL 866 >gi|283797347|ref|ZP_06346500.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1] gi|291075019|gb|EFE12383.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1] gi|295090497|emb|CBK76604.1| carbamoyl-phosphate synthase large subunit [Clostridium cf. saccharolyticum K10] Length = 1071 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + DV + ++ +PD Sbjct: 28 SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLTQIIEKERPDALLP 87 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +L+ + + A D+ K+ ++S G+ + S Sbjct: 88 NLGGQSGLNLCSELAAAGVLDKYNVQVIGVQVDAIERGEDREEFKETMASLGIEMARSEV 147 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 148 AYSVEEALAIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + S + + ++ + I ++ K +Q Sbjct: 208 SILGWEELELEVVRDSKNNMITVCFIENIDP-VGVHTGDSFCSAPMLTISEEVQKRLQEK 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +AI G + + DP + + +EIN + T S + G+ L+ Sbjct: 267 SYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA-LVS 321 Query: 291 WMV 293 M+ Sbjct: 322 AML 324 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 97/290 (33%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL++ GF+ + D D S L L + ++ H G Sbjct: 578 ALKELGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTP 637 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A D R+ + +P + ++ + Sbjct: 638 LNLAADLKKYGVNILGTTPETIDMAEDRDLFRAMMDKLNIPMPESGMAVNVEEALEIANK 697 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ D+++ + Q+ +LI++++ Sbjct: 698 IGYPVMVRPSYVLGGRGMEVVHDDEAMSFYMQQAVGVTPDRPILIDRFL---HHATECEA 754 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 DA D + VP + S +S +LP++ +D + ++ + + G Sbjct: 755 DAISDGENVFVPAVMEHIELAGIHSGDSACILPSRNLTMDQVETIKDYTSRIAKEMHVVG 814 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + +V+ LE N + T P ++ +L + Sbjct: 815 LMNMQYAI--EDGEVYVLEANPRASRT----VPLVSKVCNIKMVKLATDI 858 >gi|119960857|ref|YP_948005.1| carbamoyl phosphate synthase large subunit [Arthrobacter aurescens TC1] gi|166989830|sp|A1R6Z3|CARB_ARTAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|119947716|gb|ABM06627.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter aurescens TC1] Length = 1102 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +LE + + I A L D+ + K VV CG S Sbjct: 89 TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + + P V++P LG + + + + Q ++ ++L+E+ Sbjct: 149 IHTMEEAFAAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDVS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F DP + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|149927093|ref|ZP_01915351.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105] gi|149824314|gb|EDM83534.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105] Length = 1076 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+KV ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYKVVLVNSNPATIMTDPEMADVTYIEPITWQVVERIIEKERPDAVLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L + + A + D+++ K ++S G+ S + Sbjct: 89 TMGGQTALNCALDLAKHGVLAKYNVELIGAKEEAIEKAEDRLKFKNAMTSIGLDSAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P +I+P G + + + + Sbjct: 149 AHSMEEALEVQARIAKEVGSNGFPVIIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + S D I + + + + Sbjct: 209 NELLIEESLIGWKEYEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDREY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QLMRNASIAILREIGVDTGGSNVQFSINPANGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 103/313 (32%), Gaps = 47/313 (15%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39 + VL GG + G+ A AL + G++ + D D Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAAMALREDGYETIMVNCNPETVSTDYDTSD 615 Query: 40 ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90 V ++A KP G + I T + A Sbjct: 616 RLYFEPLTLEDVLEIVAIEKPVGVIVQYGGQTPLKLAKSLEANGVPIIGTSPESIDIAED 675 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 ++ + + P + + I P V++P + ++ + + + Sbjct: 676 RERFQKLLTKLNLRQPPNRTARTEAEAIAHAQEIGYPLVVRPSYVLGGRAMEIVHEQKDL 735 Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ ++ +L++++ D IE+ + D + + + +S Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDALCDGQTVMIGGVMEHIEQAG---VHSGD 792 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P + D+ E++R + L +A+ G+ F + V+ LE+N + T Sbjct: 793 SACCLPPYSLSADMVTELKRQSELMAKALNVIGLMNVQFAI--QNDTVYVLEVNPRASRT 850 Query: 270 PVSIFPEMAAYAG 282 P ++ G Sbjct: 851 ----VPYVSKATG 859 >gi|331087292|ref|ZP_08336362.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408978|gb|EGG88439.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1075 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 100/306 (32%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADVTYIEPLNVDRIEQIIKKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K+ + S G+ + S Sbjct: 89 NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + ++ + +P ++ K + Sbjct: 209 SILGWEELELEVVRDANNNMITVCFIENIDPLGVHTGDSFCAAPMLTIP----ENVQKRL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q ++ +AI G + + DP + + +EIN + T S + G+ Sbjct: 265 QEKSYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSAML 325 Score = 42.6 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKQLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYEKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R+ +P + ++ Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALEIAEK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ +S+ + + +LI++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVHDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+K + + + + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ L + +V R Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869 >gi|325663772|ref|ZP_08152176.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470265|gb|EGC73498.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 4_1_37FAA] Length = 1075 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 100/306 (32%), Gaps = 39/306 (12%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + D D + ++ +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADVTYIEPLNVDRIEQIIKKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K+ + S G+ + S Sbjct: 89 NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + ++ + +P ++ K + Sbjct: 209 SILGWEELELEVVRDANNNMITVCFIENIDPLGVHTGDSFCAAPMLTIP----ENVQKRL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287 Q ++ +AI G + + DP + + +EIN + T S + G+ Sbjct: 265 QEKSYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA- 319 Query: 288 LLLWMV 293 L+ M+ Sbjct: 320 LVSAML 325 Score = 42.6 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKQLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYEKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R+ +P + ++ Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALEIAEK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ +S+ + + +LI++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVHDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+K + + + + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ L + +V R Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869 >gi|254787389|ref|YP_003074818.1| urea carboxylase [Teredinibacter turnerae T7901] gi|237686682|gb|ACR13946.1| urea carboxylase [Teredinibacter turnerae T7901] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 79/267 (29%), Gaps = 20/267 (7%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 + ++A D +G E+ A + I + K ++ Sbjct: 63 TEKLFAIMAQAGVDAVHPG-YGFLSENADFVAECDKRNIAFIGPRPEHMQAFGLKHEARA 121 Query: 99 VVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155 + + VP+ P + + + I P ++K GG +G+ V K + + Sbjct: 122 LAVAQQVPLLPGSDLLDSEDEALLAAATIGYPIILKSTAGGGGIGMQVCKDAAELQKNFA 181 Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215 + +++ + + Sbjct: 182 SVKRLGANNFANDGVFIEKYIEFARHIEVQVFGDGAGNAVAFGERDCSAQRRHQKVIEET 241 Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274 P IP D+ ++ A A+ +F++D + + ++LE+N Sbjct: 242 PAPNIPDDVRSQLHLTATKLLAAVNYLNAGTVEFIYDQNTHQFYFLEVNT---------- 291 Query: 275 PEMAAYAGYSFR----ELLLWMVEDAS 297 + G + +L+ WMV A+ Sbjct: 292 -RLQVEHGVTEEVFKVDLVAWMVRQAA 317 >gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74] gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM 74] Length = 551 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 4/140 (2%) Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIP 220 D++L E+++ G E +CGV+ D + + + +E KY + +P + Sbjct: 298 DEVLFEEFITGQEFSCGVIQDDDQVAIALPPTEIYNVTSFDFESKYKLNTTKKRIPVETS 357 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 L+ +++Q +G SR D P V + N PGM+P S+ + A Sbjct: 358 LENNRKIQLAVAQVFTRLGINVYSRIDGFLTPA-GDVLLHDPNTIPGMSPSSLIFKQMAE 416 Query: 281 AGYSFRELLLWMVEDASCLR 300 G + L +++ + R Sbjct: 417 IGLNLANSLTYLIRQSLRER 436 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 55/201 (27%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39 + + GG + EREVS + G+ + L+ F+ + VD Sbjct: 3 IGIFFGGPAREREVSFAGGRTALANLDKGLFEPVLVFVDGRGRFRLVSPDFLQSPSLHDA 62 Query: 40 -----------------RSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELL 75 ++ +L L+P DLAF +HG EDG +Q +LE Sbjct: 63 LPQDSSGFSVYDESLAVDTLDAILPELRPEQFRDHFDLAFLAMHGPDCEDGAIQGLLEWH 122 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------- 126 ++PYT G++ SA+ ++K+ ++++ + ++R + Sbjct: 123 KMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATISRDDYEQADKAQFFQSLVEHLG 182 Query: 127 -PYVIKPLKGGSSLGIIVIKK 146 P VIK GSS+G+ ++++ Sbjct: 183 LPIVIKAPHQGSSIGVAIVRE 203 >gi|153808795|ref|ZP_01961463.1| hypothetical protein BACCAC_03095 [Bacteroides caccae ATCC 43185] gi|149128621|gb|EDM19839.1| hypothetical protein BACCAC_03095 [Bacteroides caccae ATCC 43185] Length = 388 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 49/306 (16%) Query: 19 GKACASALEDAGFKVSQIDVDRSV--------------------------GLVLAHLKPD 52 A A L+ +G++V+ I D++ L K D Sbjct: 14 AMAIAECLKKSGYEVAVICDDKNEYGYHTKFADERYLGVNSNKKEYAEFMLKFLKEHKFD 73 Query: 53 LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + + + L+ L S + DK V G P ++ Sbjct: 74 VLIPTSDTSAEFMSFHKEELQKLTGVMMPSREIFEK-GYDKNNLMHVCQKNGFPCPKTVD 132 Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + S+ ++ P ++KP G+I++ + + + + L Sbjct: 133 LKGWDCCSEDILKDFFYPGLLKPNLTSGGRGMILVNNFEELKNVYPEIHAGYGNCHLQQF 192 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 G ++ +M D DV +V Y SS + + E+ Sbjct: 193 IKEGGRQVKVQIMTDIKGDVAYSSVIWKQRYYPVNGGSSCCNVTID--------DPEIAT 244 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP---EMAAYAGYSFR 286 + + IG G + D + DP ++++ +EIN + P A +G + Sbjct: 245 ICGKVLKTIGWVGFADFDLIEDPQTKQLLIMEINPR--------IPACVRSAFKSGMDYA 296 Query: 287 ELLLWM 292 ++ M Sbjct: 297 TMIADM 302 >gi|229822746|ref|ZP_04448816.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271] gi|229787559|gb|EEP23673.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271] Length = 1059 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L++ G++V ++ + V ++ +PD Sbjct: 30 GTQACLSLKEEGYQVILVNSNPATIMTDRQIADKVYMEPLTLEFVSKIIRKERPDALLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111 L G G + Q +L+ + + + + + D+ +Q++ VP + Sbjct: 90 LGGQVGLNLAVQLHRQGVLDQYGVELLGTKLASIEQAEDRQLFRQLMQELGEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D I P +++P G + DQ + + ++ Q L+E+ Sbjct: 150 TNLDQARDFVAQIGYPVIVRPAFTMGGTGGGICYNDQDLDEIVSSGLHYSPVTQCLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y ++ ++ Sbjct: 210 IAG-YKEIEYEVMRDANDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.9 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 94/299 (31%), Gaps = 36/299 (12%) Query: 20 KACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVL 58 A A++ AG++ I+ + V +L H +P Sbjct: 576 HAVL-AIKAAGYEAIIINNNPETVSTDFTISDKLYFEPLTEEDVMAILNHEQPLGVVVQF 634 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + ++I T + A + DK P+ + + Sbjct: 635 GGQTAINLADKLQRHGVKILGTSLEEIDKAENRDKFEQLLHELDIPQPLGKTASDTETAV 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P +++P + ++ ++ + + + + +L ++Y+ G E+ Sbjct: 695 ANAASIGYPVLVRPSYVLGGRAMEIVYEEADLRRYMETAVRVSPEHPVLTDRYLIGQEIE 754 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D V + + +S + P + +++ + + Sbjct: 755 VDAICDGQTVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSQAQKEQLVDYTIRLAKGL 811 Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 G+ ++ +++ LE+N P ++ ++ P G S +L Sbjct: 812 NIVGLLNIQYVL--SKGELYVLEVNPRSSRTVPFLSKITGVPMAQLAMQAILGQSLSDL 868 >gi|322376823|ref|ZP_08051316.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. M334] gi|321282630|gb|EFX59637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. M334] Length = 1058 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVILVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVLAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVVDLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KNEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|312277931|gb|ADQ62588.1| Carbamoyl-phosphate synthase large chain [Streptococcus thermophilus ND03] Length = 1059 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 >gi|293608524|ref|ZP_06690827.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829097|gb|EFF87459.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 743 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LSDEAEALTEAAHIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQR 229 Y++ + + V ++ + PA + + +Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQREYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|294650425|ref|ZP_06727787.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194] gi|292823696|gb|EFF82537.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 90/314 (28%), Gaps = 47/314 (14%) Query: 22 CASALEDAGFKVSQID--VDRS-VGLVLAHL--------------KPDLAF--------N 56 L+ G + + DR + + LA D N Sbjct: 17 VIRTLKKLGIQSVAVYSEADRDSLHVTLADEAIYIGDAPASQSYLNVDKILEVAKQTGAN 76 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E + A L + +P Sbjct: 77 AIHPGYGFLSENADFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFATVSYLAQANFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQR 229 Y++ + + V ++ + PA D + +Q Sbjct: 197 YLEKFVQNARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNDQQRSYIQT 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D ++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNTRLQVEHGVTE--------QVYGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|225017616|ref|ZP_03706808.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum DSM 5476] gi|224949581|gb|EEG30790.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum DSM 5476] Length = 1067 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 92/267 (34%), Gaps = 14/267 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F I V ++A KP G + + I T + + Sbjct: 604 DRLYFDPVYI---EDVASIIATEKPYGVVVQFGGQTAIKLTKKLQEMGVRILGTSADSID 660 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 +A ++ P ++ + + + + P +++P +I+ Sbjct: 661 AAEDRERFDELLEKCGIPRPAGTTVFTAEEAVKAANELEYPVLLRPSYVLGGQNMIIAHS 720 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D+ I + +S N + +L+++Y+ G+E+ + D + P + Sbjct: 721 DKDIEEYMAIITSHNIENPVLVDKYMMGVEVEVDAICDGEDYLI----PGIMEHIERAGV 776 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S V P + I + + A+ RG+ ++ + +V+ +E+N + Sbjct: 777 HSGDSISVYPCQNLSKSIRETIIDYTAKLALALDVRGLLNIQYVV--YNDEVYVIEVNPR 834 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ G +L + Sbjct: 835 SSRT----VPYISKVTGVPMVDLATKI 857 Score = 52.6 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + +V ++ KPD + Sbjct: 30 GTQACRALKEEGLEVVLVNSNPATIMTDKAMADHIYIEPLTLETVKRIIEIEKPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G +Q L + + + D+ K + G P PS + Sbjct: 90 LGGQTGLTLSMQLAKDGFLAEHGVKLLGARPETIDKAEDRQEFKDTMEKIGQPCIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P +I+P G + + + + Q+L+E+ Sbjct: 150 ENIDDAVAFANEIGLPLIIRPAFTLGGTGGGIAETMEEFIEIATNGLRLSPITQILVEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + ++ + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVIRDSKGNVITVCSMENVDP-VGVHTGDSIVVAPAVTLTDKEYQMLRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F P S + +E+N P ++ S + GY ++ Sbjct: 269 LDIISELEVEGGCNCQFALHPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKIATK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|261419031|ref|YP_003252713.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. Y412MC61] gi|319765848|ref|YP_004131349.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC52] gi|261375488|gb|ACX78231.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC61] gi|317110714|gb|ADU93206.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. Y412MC52] Length = 1042 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + + ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDVLEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLAESPIRQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ I+ + SV V+ + Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ Sbjct: 637 QFGGQTAINLVKGLEEAGVSLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAEE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +++P G+ ++ + + + Q +LI+ Y+DG E Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLAALIEQGELTY---PILIDAYLDGKE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235 ++ D T+I +P + + S +S LPA+ + ++ A Sbjct: 754 AEADIVTD----GTDIVLPVIIEHVEKAGVHSGDSYAWLPAQTLTDEEKAKIIDYASRIA 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G +GI ++ V+ LE+N + T P ++ G ++ ++ Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861 >gi|254416184|ref|ZP_05029939.1| carbamoyl-phosphate synthase, large subunit [Microcoleus chthonoplastes PCC 7420] gi|196177117|gb|EDX72126.1| carbamoyl-phosphate synthase, large subunit [Microcoleus chthonoplastes PCC 7420] Length = 1072 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + V V+A +PD Sbjct: 17 SGTQACKALQQEGYEVVLVNSNPATIMTDPETADRTYIEPLTPEIVEKVIAKERPDALLP 76 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A ++ D+ K+ + G+ VCPS + Sbjct: 77 TMGGQTALNIAVTLAKNGVLDKYGVDLIGAKLDAIEMAEDRQLFKEAMGRIGIGVCPSGI 136 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + P +I+P G + + + Q+L+E Sbjct: 137 ASNLDEAKALAQRIGTYPLIIRPAYTLGGTGGGIAYNQEEYEEMAQAGLDASPVSQILVE 196 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 197 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P+S V +E+N P ++ S + G+ + Sbjct: 257 SIQIIREIGVETGGSNIQFAINPVSGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 312 Query: 290 LWM 292 + Sbjct: 313 AKL 315 Score = 44.1 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 83/299 (27%), Gaps = 38/299 (12%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL GF+ ++ V ++ KP+ G Sbjct: 574 ALAKQGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETEKPEGIIIQFGGQTP 633 Query: 64 EDGLVQAILELLEIPYTHSGILASA--------LSMDKMRSKQVVSSCGVPVCPS--ILV 113 V L S ++ D+ R ++++ + P+ Sbjct: 634 LKLAVPLQEFLNNPEIPTSVPTKIWGTSPDSIDIAEDRERFEKILRQLDIKQPPNGIARS 693 Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 ++ I P V++P + ++ D + + + +LI+++++ Sbjct: 694 YEEALNIAKRIGYPVVVRPSYVLGGRAMEIVYSDLELERYMTFAVQVEPEHPILIDKFLE 753 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 + V A + + +S ++ + + + ++ Sbjct: 754 N-AIEVDVDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSIPFISLSPTAMETIRTSTHQ 812 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + G+ F V+ LE N + T P ++ G L + Sbjct: 813 LATKLKVIGLMNIQFAV--QGETVYILEANPRASRT----VPYVSKATGVPLAALASRI 865 >gi|183979202|emb|CAQ42993.1| carbamoyl phosphate synthetase [Streptococcus thermophilus] Length = 1059 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 >gi|55820608|ref|YP_139050.1| carbamoyl phosphate synthase large subunit [Streptococcus thermophilus LMG 18311] gi|55822498|ref|YP_140939.1| carbamoyl phosphate synthase large subunit [Streptococcus thermophilus CNRZ1066] gi|116627411|ref|YP_820030.1| carbamoyl phosphate synthase large subunit [Streptococcus thermophilus LMD-9] gi|81820333|sp|Q5M0W9|CARB_STRT1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|81820496|sp|Q5M5F6|CARB_STRT2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|122267990|sp|Q03LT8|CARB_STRTD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|55736593|gb|AAV60235.1| carbamoyl phosphate synthetase, large chain [Streptococcus thermophilus LMG 18311] gi|55738483|gb|AAV62124.1| carbamoyl phosphate synthetase, large chain [Streptococcus thermophilus CNRZ1066] gi|116100688|gb|ABJ65834.1| carbamoyl-phosphate synthase large subunit [Streptococcus thermophilus LMD-9] Length = 1059 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 >gi|126641323|ref|YP_001084307.1| allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC 17978] gi|126387207|gb|ABO11705.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC 17978] Length = 900 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 49 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 108 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 109 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 168 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 169 YLEKFVQHARHIEVQIFGDGQGKVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 228 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 229 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 278 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 279 -DLVEWMVTLASGD 291 >gi|260549612|ref|ZP_05823830.1| biotin carboxylase [Acinetobacter sp. RUH2624] gi|260407405|gb|EEX00880.1| biotin carboxylase [Acinetobacter sp. RUH2624] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAVQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|254432413|ref|ZP_05046116.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC 7001] gi|197626866|gb|EDY39425.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC 7001] Length = 1113 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 94/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V + D D V V+A KPD Sbjct: 29 SGTQACKALRAEGYEVVLVNSNPASIMTDPDMADRTYIEPLTPEVVARVIAIEKPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L + + + A + D+ KQ + GV VCPS + Sbjct: 89 TMGGQTALNLAVTLAENGTLAEFGVELIGADLEAIRKAEDRQLFKQAMEKIGVAVCPSGI 148 Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + S P +I+P G + + + Q+LIE Sbjct: 149 ANNLEEAEAVGDAIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAFCKSGLEASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + + D I + + + + + + Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P + V +E+N P ++ S + G+ +L Sbjct: 269 SIAIIREIGVDTGGSNIQFAINPANGDVVVIEMN--PRVSRSS--ALASKATGFPIAKLA 324 Query: 290 LWM 292 + Sbjct: 325 ARL 327 >gi|187477421|ref|YP_785445.1| carbamoyl phosphate synthase large subunit [Bordetella avium 197N] gi|115422007|emb|CAJ48529.1| carbamoyl-phosphate synthase large chain [Bordetella avium 197N] Length = 1079 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 92/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL+ G++ + DV ++V ++ +PD Sbjct: 29 SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIERERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G D +L ++ + A + D+ + K ++ G+ S + Sbjct: 89 TMGGQTALNCALDLAHNGVLAKYKVELIGANEHAIEKAEDRQKFKMAMNDIGLESAKSGV 148 Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 + + P VI+P G + + + + Sbjct: 149 AHTMEEAWEVQRRIAAEIGTSGFPAVIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P + ++ +E+N P ++ S + G+ Sbjct: 269 QIMRDASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAARL 333 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 93/298 (31%), Gaps = 35/298 (11%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + GF+ + D D S L L + ++H G Sbjct: 589 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + A ++ + P + + Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHAAE 708 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + Q + + ++ ++ +L++++ + E+ + Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + DI E++R +A+ G Sbjct: 769 ADGETVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSADIVAEIKRQTTTMARALNVSG 825 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + F V+ LE+N + T P ++ G L + A R Sbjct: 826 LMNVQFAV--QDGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873 >gi|15921798|ref|NP_377467.1| carbamoyl phosphate synthase large subunit [Sulfolobus tokodaii str. 7] gi|22095518|sp|Q970U7|CARB_SULTO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|15622585|dbj|BAB66576.1| 1049aa long hypothetical carbamoyl-phosphate synthase large subunit [Sulfolobus tokodaii str. 7] Length = 1049 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 32/296 (10%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAF- 55 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETILVNSNVATVQTSRKFADKLYMIPVTWWAVEKVIERERPDGIMV 86 Query: 56 -----NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L+ +++ T + ALS +K R + VP S Sbjct: 87 GFGGQTALNVGVDLYNKGILQKYGVKVLGTPIEGIERALSREKFRETMINVGLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +++ G IV ++ + D+ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEALEKARQIGYPVMVRVSFNLGGRGSIVAWNEEELKRDIGRALSQSYIHEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 Y+ + + + ++ ++ + +++++ + Sbjct: 207 YLHHW-IELEYEVMRDKYGNSAVIACIENLDPMGVHTGESTVISPCQTLDNKEFQDMRFM 265 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + ++I G F DP + +E N P M+ S + GY Sbjct: 266 SMDVAKSIDLVGECNVQFALDPKGYNYYVIETN--PRMSRSS--ALASKATGYPLA 317 Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 74/225 (32%), Gaps = 7/225 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ K G G + + E + + T + +A +K Sbjct: 619 ERVLDLIRKEKFTYVATFTGGQIGNNISKKLEEEGIRLLGTSGRSIDTAEDREKFSKLLD 678 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P S + + P +I+P S + ++ D + L +++ Sbjct: 679 KLGIKQPEWISARSLEEVKEFISKVGYPVLIRPSYVLSGAAMKIVNNDLELMEYLKRATE 738 Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 + ++I +Y++ + + + E S ++T +P + Sbjct: 739 VSPEHPVVISKYLN----DAIEAEIDAAGDGKGVYGVVIEHVEEAGVHSGDATMSIPYRK 794 Query: 220 -PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263 ++ +++ + + + +G F+ + + + +E+N Sbjct: 795 LSSNVVNKMKENVHMIVRELEIKGPFNVQFVI--KNNEPYIIELN 837 >gi|225851167|ref|YP_002731401.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella marina EX-H1] gi|225645341|gb|ACO03527.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella marina EX-H1] Length = 478 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 62/325 (19%) Query: 19 GKACASALEDAGFKVSQID--VDRSVGLV--------------------------LAHLK 50 A ++ G K I D + V + Sbjct: 19 ATRIIRACKELGIKTVAIYSEADSNGIWVKKADEAYMIPGDPIRAYLNFYKIVDLAKQTR 78 Query: 51 PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 D +G E+ + E + + AL DK+ SK+ + GVPV P Sbjct: 79 CDGIHPG-YGFLSENADFASYCEKRGLIFIGPKPEHIALFGDKIASKKAMKEVGVPVLPG 137 Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161 I + I P +IK GG G+ +++K+ + Sbjct: 138 TDEPITDIDYAKKIAREIGFPVIIKAAYGGGGRGMRIVEKESDFEELFRSATAEAEKFFG 197 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 GD + + + + +M D +V + + ++ Sbjct: 198 KGDVFIEKYVKNPRHIEIQIMADKYGNVIHLGERDCSIQ----RRHQKIVEIAPSPRLND 253 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280 ++ +E+ R+A + +G + +FL D +++E+N + + Sbjct: 254 EVRRELYRVAVKSMFKLGYESVGTLEFLVDEDDN-FYFIEMNTR----------LQVEHT 302 Query: 281 -----AGYSFRELLLWMVEDASCLR 300 G +L+ M++ A R Sbjct: 303 VTETVTGV---DLVQRMIQIAEGTR 324 >gi|209528194|ref|ZP_03276664.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima CS-328] gi|209491379|gb|EDZ91764.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima CS-328] Length = 1077 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+ V ++ + + V V+ +PD Sbjct: 29 SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +L+ + + + A + D++ KQ + GV CPS + Sbjct: 89 TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVGCCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N P +I+P G + + + + Q+L+E Sbjct: 149 ANNLNEARAIAEQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELAIAGLDASPMSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P++ V +E+N P ++ S + G+ + Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 42.2 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ D+ + + + +L++++++ Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + + + + S +S +P + + + ++R +A+ Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQSLSETVLATIRRQTIQLAKALN 826 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F +V+ LE N + T P ++ G ++ Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872 >gi|228922639|ref|ZP_04085939.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837068|gb|EEM82409.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1018 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ I+ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95 V ++ +PD L G G + V+ +L+ + + + A + D+ Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77 Query: 96 SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153 + ++ P PS I + I P +++P G + ++ + Sbjct: 78 FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137 Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213 + + Q L+E+ + G + + S D + + + Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197 Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253 Query: 274 FPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 -ALASKATGYPIAKLAAKI 271 >gi|239815598|ref|YP_002944508.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus S110] gi|239802175|gb|ACS19242.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus S110] Length = 1082 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+KV I DV ++V ++A +PD Sbjct: 29 SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 + G + + + + A + D+++ K ++ G+ Sbjct: 89 TMGGQTALNCALDLWRHGVLDKYTGAATNKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148 Query: 106 PVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163 S Q + P VI+P G + + + + Sbjct: 149 GSARSGIAHSMDEAWAVQKSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPT 208 Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223 ++LLIE+ + G + + D I + + + + Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEY 268 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 + + G S F +P ++ +E+N P ++ S + G+ Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324 Query: 284 SFRELLLWM 292 ++ + Sbjct: 325 PIAKVAAKL 333 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 95/295 (32%), Gaps = 30/295 (10%) Query: 22 CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +AL + G++ + D D V ++ KP Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + I T ++ +A ++ + P + + Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 703 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P V++P + ++ + + + + ++ ++ +L++++++ + Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAVE 762 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 C V + + + +S ++ + P + + E++R + A+ Sbjct: 763 CDVDCIRDAEGQTLIGGVMEHIEQAGVHSGDSACSLPPYSLSAETIAELKRQSAAMAAAL 822 Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F K ++ LE+N + T P ++ G ++ Sbjct: 823 NVVGLMNVQFAIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGIQLAKVAAR 873 >gi|237752815|ref|ZP_04583295.1| carbamoyl-phosphate synthase subunit large [Helicobacter winghamensis ATCC BAA-430] gi|229376304|gb|EEO26395.1| carbamoyl-phosphate synthase subunit large [Helicobacter winghamensis ATCC BAA-430] Length = 1089 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 87/300 (29%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A L++ GFKV I+ + V ++ K D Sbjct: 29 SGTQAAKTLKELGFKVVLINSNPATIMTDPEFADRTYIEPITEEVVADIIKKEKVDAILP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE ++ + + + +P Sbjct: 89 TMGGQTALNIAMSMFEKGMLEGVKFLGAKPEAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + +++LIE+ + Sbjct: 149 TLEEALEAAKEIGFPLIIRASYTLAGGGSGVAYNIDEFKALAQNGLEVSPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + +D I + + + + + Sbjct: 209 LGWKEYEMEVIRDRVDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F +P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAINPSTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 30/262 (11%), Positives = 89/262 (33%), Gaps = 16/262 (6%) Query: 32 KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + +V V+ KPD ++H + L + + + Sbjct: 616 DVLYFEPITFENVRSVIEREKPDGI--IVHFGGQTPLKLAKKLTTIGAKIIGTSAKTIDI 673 Query: 90 SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 + D+ + + V G+ + + I P +++P + ++ Sbjct: 674 AEDREKFAKFVEENGLLQPKNGTAYTKEEAISIAQNIGFPVLVRPSYVLGGRAMRIVYSV 733 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ S + +LI+++ + IEL ++ D + + Sbjct: 734 LELQEYMSEAVSVSEDSPVLIDKFLNNAIELDVDIICDGEDVYIAGIMQHIEEAGIHSG- 792 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ++ + I + +E+++ + +G G+ + + + ++ +E+N + Sbjct: 793 --DSACSLPTISISQEKLEEIEQTTAKIARNLGVIGLMNTQYAIFEDT--LYLIEVNPRA 848 Query: 267 GMTPVSIFPEMAAYAGYSFREL 288 T P ++ G ++ Sbjct: 849 SRT----VPFVSKATGIPLAKV 866 >gi|156102637|ref|XP_001617011.1| carbamoyl phosphate synthetase II [Plasmodium vivax SaI-1] gi|148805885|gb|EDL47284.1| carbamoyl phosphate synthetase II, putative [Plasmodium vivax] Length = 2192 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAH--------- 48 G S E + S C + K I D D S L Sbjct: 1670 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1726 Query: 49 ---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K G + + + I T + + + +K + Sbjct: 1727 YSFEKSHGVIIAFGGQTSNNLVFSLYKNSVNILGTSAKSVDCCENRNKFSNLCDSLKIDQ 1786 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P + + + P +++P S + V+ + + L++++ + + Sbjct: 1787 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 1846 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++I ++++ + + + A+ + + + I ++ ++ Sbjct: 1847 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1904 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++++ +++ G F+ ++ +E N + FP ++ +F Sbjct: 1905 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1958 Query: 286 RELLLWMV 293 +L ++ Sbjct: 1959 IDLATRIL 1966 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G V ++ + V ++ KPD Sbjct: 662 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 721 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110 G + +L+ + + + ++ ++ + + + S Sbjct: 722 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLREINEIIAPYGS 781 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + I P +++ L I ++ + + +++ I++ Sbjct: 782 ARNVEQAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELIKK-CKEIFLQTDNEIFIDK 840 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G IA+ + ++ + + Y + + + Sbjct: 841 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREI 899 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A + G F +P + + +E+N + ++ S + GY Sbjct: 900 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 951 >gi|325121676|gb|ADY81199.1| UreA amidolyase related protein [Acinetobacter calcoaceticus PHEA-2] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|194477256|ref|YP_002049435.1| carbamoyl-phosphate synthase, large subunit [Paulinella chromatophora] gi|171192263|gb|ACB43225.1| carbamoyl-phosphate synthase, large subunit [Paulinella chromatophora] Length = 1100 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 41/314 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G++V I D D V V+ +PD Sbjct: 29 SGTQACKALRAEGYEVVLINSNPASIMTDPDMADRTYIEPLTPEVVTRVIELERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V ILE + + + A + D++ KQ + V VCPS + Sbjct: 89 TMGGQTALNLAVTLARVGILERFGVELIGANLQAIQKAEDRLLFKQAMERIEVHVCPSGI 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P G + + + + Q+LIE Sbjct: 149 ASNLEEAKEVGETIGSYPRIIRPAFTLGGSGGGIAYNPEEFFAICKEGLEASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + + D I + + + + + + Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279 + + G S F +P+ +V +E+N P ++ S ++AA Sbjct: 269 SIAIIREIGVDTGGSNIQFAINPVDGEVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326 Query: 280 -YAGYSFRELLLWM 292 GY+ E+L + Sbjct: 327 LAVGYTLDEILNDI 340 Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 7/172 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V++P + V+ + + ++ +LI+QY++ + Sbjct: 729 ADNVGYPVVVRPSYVLGGRAMEVVFDKADLKRYINEAVKVEPNHPVLIDQYLEN-SIEVD 787 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V ++ + + +S ++ + + ++ + A+ Sbjct: 788 VDAICDINQQVVIGGLMEHIEPAGIHSGDSACCLPAISLSNKTLDIIREWSKDLAIALEV 847 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ F +V+ +E N + T P +A G + + Sbjct: 848 NGLINLQFAV--QGEQVYIIEANPRASRT----IPFVAKATGVPLARIASQL 893 >gi|170077261|ref|YP_001733899.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002] gi|169884930|gb|ACA98643.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002] Length = 384 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 35/310 (11%) Query: 19 GKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELL 75 A+ALED GF+ V + D ++G L + LA+ G G + + ILE+L Sbjct: 55 AHDIAAALEDLGFQHVFVLPDDATLGDRLRKHQIHLAWLNTGGVQGYNPVCHTPAILEML 114 Query: 76 EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124 +PY L S++ +K K+ + G P P ++ + + Sbjct: 115 GVPYIGHNPLNSSILDNKHSFKRELQGLGFPTAPFMIWHPAQGKFTAKDNARFQQTFGDY 174 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 +++KP+ G +SL I + + Q + + H + LIE ++ G E V G Sbjct: 175 QGSFLVKPVSGRASLNIHFVDQPQDLGEAIANIHQQTH-NTALIEPFLTGREFCVSVCGY 233 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-------------- 230 + +S F L+ + + I + R Sbjct: 234 VRHRQGQFEKLESPFTFSILERLLEADEKIFTSMDKKAITGQRIRFLDDSDPAKKKLAKL 293 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSF 285 A + + R D D + + LE N +P + S+ + + G ++ Sbjct: 294 AQQVYWEFSLNALIRIDARMDAMGN-IQILEANPKPDLKRPAANVTSLVAQGLSEEGMTY 352 Query: 286 RELLLWMVED 295 +L+L ++ D Sbjct: 353 EDLILSLISD 362 >gi|149019270|ref|ZP_01834632.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP23-BS72] gi|147931140|gb|EDK82119.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP23-BS72] Length = 1058 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPVQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|257467326|ref|ZP_05631637.1| carbamoyl phosphate synthase large subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315918455|ref|ZP_07914695.1| carbamoyl-phosphate synthase subunit large [Fusobacterium gonidiaformans ATCC 25563] gi|313692330|gb|EFS29165.1| carbamoyl-phosphate synthase subunit large [Fusobacterium gonidiaformans ATCC 25563] Length = 1068 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 33/279 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + ++ KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 ++I T + + A +K P + + + Sbjct: 641 AIKLAKDLEKRKIKILGTSAEKIDEAEDREKFEEMMEDLDIKRPRGRASWDVEHGIAIAN 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P G+ + + ++ L S S + +LI++Y++GIEL + Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEINLVKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + +++ + +A+ + Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYAGTEEQILEITTKIARALKVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ +++ +E+N P ++ +S P Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+ +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + ILE I + I + D+ R + Sbjct: 88 GMGGQTALNMVVELFEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILTSHV 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G Q + LL+ S + Q+LIE+ Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++R Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + IG G F P S + +EIN P ++ S + GY + Sbjct: 266 ASLKIVEEIGIIGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TKL 324 >gi|297530997|ref|YP_003672272.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. C56-T3] gi|297254249|gb|ADI27695.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. C56-T3] Length = 1042 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V ++A +PD Sbjct: 29 SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDAVEAIIAKERPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G G + Q LE + + I A D+ R+ VP Sbjct: 89 TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + + + + + Q LIE+ Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLAESPIRQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G T I V + ++ + + + Y+ ++ Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F DP S++ + +E+N P ++ S + GY + Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S + AL+ G++ I+ + SV V+ + Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + ++ D+ + Sbjct: 637 QFGGQTAINLVKGLEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAQE 696 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 I P +++P G+ ++ + + + Q +LI+ Y+DG E Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLVALIEQGELTY---PILIDAYLDGKE 753 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235 + + D T+I +P + + S +S LPA+ + ++ A Sbjct: 754 AEADI----ATDGTDILLPTIIEHVEKAGVHSGDSYAWLPAQTLTDEEKAKIIDYAGRIA 809 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + +G +GI ++ V+ LE+N + T P ++ G ++ ++ Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861 >gi|295094928|emb|CBK84019.1| carbamoyl-phosphate synthase, large subunit [Coprococcus sp. ART55/1] Length = 1068 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI-----------DVDRSVGLV-LAHLKPDLAFNVLH-------GNFGED 65 A E G++ + D+ + L + N+ H Sbjct: 584 AFERKGYETIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVNLEHPDGAVVQFGGQTA 643 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123 + L + +P + + D+ +++ C +P + +++ + Sbjct: 644 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 704 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVC 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + ++ G Sbjct: 764 DGDDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 820 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G V I+ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTVDVVKAIIEKEKPDSLLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + ++ + T S + A + + V + Sbjct: 90 LGGQAALNIAMELDESGFLREHDVLLIGTSSTTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + + ++ L+ + Q+L+E+ Sbjct: 150 TTVQGGLNFVKKIGYPVVLRPAYTLGGSGGGIAENEEEFKEILMNGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYNLDEIKNAITKK 341 >gi|225375971|ref|ZP_03753192.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM 16841] gi|225212224|gb|EEG94578.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM 16841] Length = 1068 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++A KPD Sbjct: 30 GTQACRSLKEEGVEVVLVNSNPATIMTDKEIADEVYIEPLTVDVLEKIIAKEKPDSVLPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + + Q +L+ + + + D+ K + G P S + Sbjct: 90 LGGQAGLNLGMELAEQGVLDKYGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + + I P V++P G + +Q + L + ++L+E+ Sbjct: 150 NNVQDGIKFTNTIGYPVVLRPAFTLGGSGGGIAHNEQELVDILTNGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 85/257 (33%), Gaps = 13/257 (5%) Query: 39 DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98 V ++ KPD A G + L + + + + D+ + Sbjct: 616 TEDVEAIVKIEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDE 673 Query: 99 VVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 ++ +P + + + + P +++P G+ + D+ I + Sbjct: 674 ILEKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDEEIEEFIGI 733 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + +L+++Y+ G E+ + D + + + + + + Sbjct: 734 INRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGIHSG---DSISVYPA 790 Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 I + + + QA+ G+ F+ + +V+ +E+N + T P Sbjct: 791 PTISEPVKEMIVEYTKRLAQALHVIGLINIQFIV--MDEQVYVIEVNPRSSRT----VPY 844 Query: 277 MAAYAGYSFRELLLWMV 293 ++ G +L ++ Sbjct: 845 ISKVTGIPIVDLATKVI 861 >gi|163815132|ref|ZP_02206513.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759] gi|158449541|gb|EDP26536.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759] Length = 1068 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI-----------DVDRSVGLV-LAHLKPDLAFNVLH-------GNFGED 65 A E G++ + D+ + L + N+ H Sbjct: 584 AFERKGYETIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVNLEHPDGAVVQFGGQTA 643 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123 + L + +P + + D+ +++ C +P + +++ + Sbjct: 644 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + +L+++Y+ G E+ + Sbjct: 704 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVC 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + + ++ G Sbjct: 764 DGDDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ + +V+ +E+N + T P ++ G +L ++ Sbjct: 820 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 96/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G V I+ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTVDVVKAIIEKEKPDSLLPT 89 Query: 58 LHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + ++ + T S + A + + V + Sbjct: 90 LGGQAALNIAMELDESGFLREHDVLLIGTSSTTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++ I P V++P G + ++ L+ + Q+L+E+ Sbjct: 150 TTVQGGLNFVKKIGYPVVLRPAYTLGGSGGGIANNEEEFKEILMNGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYNLDEIKNAITKK 341 >gi|114777974|ref|ZP_01452888.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1] gi|114551761|gb|EAU54313.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1] Length = 1199 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + K + + + +++ Sbjct: 147 AESIGYPVMLKSTAGGGGIGMQLCWKAEDLVSAFESVKRLGRSNFSNDGVFLEKYIEHAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V + + PA D + + A +A+ Sbjct: 207 HIEVQIFGDGKGFVTALGERDCSTQRRNQKVLEESPAPNISDAVRAAMMDTAVRLGEAVE 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++DP S ++LE+N + G+T G +L+ WM+ Sbjct: 267 YRSAGTVEFIYDPNSESFYFLEVNTRLQVEHGVTE--------EVTGV---DLVEWMIRL 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|258510765|ref|YP_003184199.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477491|gb|ACV57810.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 24/188 (12%) Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD 173 I P ++K GG +G+ V++++ ++ + + + Sbjct: 145 CVCADIGYPVILKSTAGGGGIGMRVVEREDALADAFESVRRLAGQHFRDDGVFVEKYVPR 204 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 + + G+ ++ I + + + + + + A Sbjct: 205 ARHIEVQIFGNRQGELVAIGERDCTLQ----RRNQKVVEECPAHVLSDETRRRLHEAALS 260 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELL 289 +A+G R +FL+DP S ++LE+N + G+T G +L+ Sbjct: 261 VARAVGYRSAGTVEFLYDPSSASFYFLEVNTRLQVEHGVTE--------EVYGI---DLV 309 Query: 290 LWMVEDAS 297 WM+ +A+ Sbjct: 310 EWMIREAA 317 >gi|225175359|ref|ZP_03729354.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] gi|225169111|gb|EEG77910.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter alkaliphilus AHT 1] Length = 1086 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+K+ ++ + + + +++ KPD Sbjct: 29 SGTQACKALREEGYKIVLVNSNPATIMTDPEMADAVYIEPLNTDILEMIIDKEKPDAILP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V+ IL+ + +GI A + D+ + + G+ V S Sbjct: 89 TIGGQTALNLTVELAEKGILDKYRVELIGAGIDAIKKAEDRELFRAAIQKVGLDVPQSFA 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ +D I P +++P G + Q L + + Q+L+E+ Sbjct: 149 VSSLAEGLDVIGEIGFPAILRPAFTLGGTGGGIAYNIQEYREILEKGLDLSPTKQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I +F + + + + Sbjct: 209 SVLGWKEFELEVMRDKKDNVVIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIIREIGVDTGGSNIQFGISPQDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A D G++ + D D V ++ KP G Sbjct: 597 ACRDLGYEAVMVNCNPETVSTDYDTADRLYFEPLTAEDVMNIIELEKPRGVILQFGGQTP 656 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A + + P + + + + Sbjct: 657 LKLAMTLWQAGVKILGTSPDSVDRAEDRKRFKELLDKLELKQPESVTAVSVEEALAAVQN 716 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182 I P +++P + +I D ++ + ++ + +LI++Y++G IE+ + Sbjct: 717 IGYPVIVRPSYVLGGRAMEIIYSDDNLLDYMNRAMVASPEHPVLIDKYLEGAIEVDVDAV 776 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + + ++ + P I DI +E++ +G G Sbjct: 777 SDGTNTLIAGIMEHIEEAGIHSG---DSACSLPPYSISSDIIEEIRVQTKALATELGVCG 833 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + + + ++ LE+N + T P ++ G F +L ++ Sbjct: 834 LMNIQYAV--KNGDIYILEVNPRASRT----IPFVSKVTGIPFAKLATRVI 878 >gi|184157603|ref|YP_001845942.1| biotin carboxylase [Acinetobacter baumannii ACICU] gi|332874565|ref|ZP_08442466.1| urea carboxylase [Acinetobacter baumannii 6014059] gi|183209197|gb|ACC56595.1| Biotin carboxylase [Acinetobacter baumannii ACICU] gi|322507909|gb|ADX03363.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii 1656-2] gi|323517505|gb|ADX91886.1| biotin carboxylase [Acinetobacter baumannii TCDC-AB0715] gi|332737203|gb|EGJ68129.1| urea carboxylase [Acinetobacter baumannii 6014059] Length = 1201 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LSDEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285 +A Q++ R +F+ D +++ ++LE+N + G+T G Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306 Query: 286 RELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 -DLVEWMVTLASGD 319 >gi|268678831|ref|YP_003303262.1| carbamoyl-phosphate synthase, large subunit [Sulfurospirillum deleyianum DSM 6946] gi|268616862|gb|ACZ11227.1| carbamoyl-phosphate synthase, large subunit [Sulfurospirillum deleyianum DSM 6946] Length = 1085 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 83/300 (27%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A L++ G++V ++ + + ++ D Sbjct: 29 SGTQAAKTLKELGYRVVLVNSNPATIMTDPEFADRTYIEPITPEVIARIIEKESVDAVLP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L + + + + + +P+ Sbjct: 89 TMGGQTALNVAMTMHEKGMLNNVTFLGANPAAIKKGEDRQAFKEAMLKIGMDLPISAYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + I P +I+ + G V + + +++LIE+ + Sbjct: 149 NMEDAYVAAEKIGFPLIIRASYTLAGGGSGVAYNIDEFKELAMAGLDASPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSICPNTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 43.3 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 85/260 (32%), Gaps = 11/260 (4%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD G + + +I T + ++ A + Sbjct: 616 FEPIDF-EHVRSVVEKENPDGIIVHFGGQTPLKLAKKLTVMGAKIIGTTARVIDMAEDRE 674 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K ++ P + ++ I P +++P + ++ + + Sbjct: 675 KFSKFITENNIKQPNNATATSEEEAIEKAKEIGYPVLVRPSYVLGGRAMRIVYNESELRT 734 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + ++ S +H +LI+Q++D + V I + E S +S Sbjct: 735 YMNEAVSVSHNSPVLIDQFLD-RAIEVDVDAICDGKDVYIGG--IMQHIEEAGIHSGDSA 791 Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271 LP+ D I +++ +G G+ + V+ +E+N + T Sbjct: 792 CSLPSVSLSDAILAKIEAQTQQIALNLGVVGLMNIQYAIYQDD--VYMIEVNPRASRT-- 847 Query: 272 SIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 848 --VPFVSKATGMPMAKIATR 865 >gi|308177492|ref|YP_003916898.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Arthrobacter arilaitensis Re117] gi|307744955|emb|CBT75927.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Arthrobacter arilaitensis Re117] Length = 1092 Score = 60.3 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + LE ++ + I A L D+ + K VV CG S++ Sbjct: 89 TLGGQTALNTAIALDKSGALEKYDVELIGANIEAIELGEDREKFKGVVERCGAESARSVI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ ++ P V++P LG + + + ++ ++L+E+ Sbjct: 149 VHTLDEAFAAVEELNYPVVVRPSFTMGGLGSGMAYNPEDLRRIAGAGLQYSPTTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + K Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDREYQKLRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAIEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|323702041|ref|ZP_08113709.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum nigrificans DSM 574] gi|323532923|gb|EGB22794.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum nigrificans DSM 574] Length = 1073 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G +V ++ + V V+ KPD Sbjct: 30 GTQACRSLREEGLEVVLVNSNPATIMTDANMADKVYIEPLTPEFVTRVIRQEKPDGLLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 L G G + +Q IL+ + + + A + D+ K ++ VP + Sbjct: 90 LGGQVGLNIALQLAERGILDEEGVTLLGTPLDAIRKAEDREMFKLMMEQIGEPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 R ++ I P +++P G + K + + ++ + Q+L+E+ Sbjct: 150 CTVREAVEFADSIGYPVIVRPAYTLGGTGGGIAKNREQLEAVAIKGLKHSLIGQILVERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + S D + + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDSADNCITVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNVQFALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 85/289 (29%), Gaps = 32/289 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + I D D V VLA KP G Sbjct: 584 ALREEGLEAITINNNPETVSTDFDTADRLYFEPLVVEDVLNVLAKEKPQGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A ++ P + Sbjct: 644 INLAKPLAQAGIKIIGTSVDAIDMAEDRERFDRLLTELGIPKPPGGTAFSVEQAAVIAEK 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + ++ +L+++Y+ G E + Sbjct: 704 IGFPVLVRPSYVLGGRAMEIVYSQAELLAYMERAVQVTPEHPVLVDRYLAGREFEVDAVC 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ ++ QA+G +G Sbjct: 764 DGETVLI----PGIMEHIERAGVHSGDSIAVYPAQTLTQAQTDQMVDYTQRLAQALGIKG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + ++ +V+ +E+N + T P ++ G L Sbjct: 820 LVNIQYVLHE--GQVYVIEVNPRSSRT----VPYLSKVTGIPMVNLATK 862 >gi|301794351|emb|CBW36778.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae INV104] gi|332203124|gb|EGJ17192.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA47901] Length = 1058 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|168491194|ref|ZP_02715337.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC0288-04] gi|183574365|gb|EDT94893.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC0288-04] Length = 1058 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|148989300|ref|ZP_01820680.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP6-BS73] gi|225854738|ref|YP_002736250.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae JJA] gi|254813662|sp|C1CEM9|CARB_STRZJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|147925278|gb|EDK76357.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP6-BS73] gi|225724177|gb|ACO20030.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae JJA] Length = 1058 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|328952761|ref|YP_004370095.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca acetoxidans DSM 11109] gi|328453085|gb|AEB08914.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca acetoxidans DSM 11109] Length = 1080 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ GF+V I+ + + V ++ +PD Sbjct: 29 SGVQACKALKEEGFEVVLINSNPATIMTDPEIADRTYIEPITPEMVCKIIERERPDAILP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G IL+ L + + + D+ + +++ + V S Sbjct: 89 TLGGQTGLNCAVAVADTGILKRLGVEMIGASPEVIKKAEDRQLFRDAMANINLRVPTSVI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ ++S P +++P G + + + + ++++E+ Sbjct: 149 VRSMAEVLEAPEVLSYPIIVRPSFTLGGTGGGIAYNLEDLKELSAYGLEASMIQEVMLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVLGWKEFELEVMRDVKDNVVIICSIENLDPMGVHTGDSITVAPAQTLSDREYQRMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVETGGSNIQFAVQPQTGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 10/180 (5%) Query: 121 QHLISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P V++P G IV + L+ + D IE+ Sbjct: 710 AKQIGYPVVVRPSYVLGGRAMQIVADDRVLANFMSWALEASPEHPILIDKFLEDAIEVDV 769 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + + ++ + P +P I KE+ R +G Sbjct: 770 DAIADGKTTIIGGIMEHIEEAGIHSG---DSACVLPPYSLPPAILKEITRQTQALAAELG 826 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+ F +V+ LE+N + T P ++ G +L ++ A+ Sbjct: 827 VVGLMNIQFAV--KDGQVYILEVNPRASRT----IPFVSKATGVPLAKLATKVMLGATLD 880 >gi|294055599|ref|YP_003549257.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221] gi|293614932|gb|ADE55087.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221] Length = 1208 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ + Sbjct: 156 AIDIGYPVMLKSTAGGGGIGMQICVDEAELIEAYASVERLSQSHFGQGGIFLEKFVVHAR 215 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + V + + P ++ +Q A A+ Sbjct: 216 HLEVQIFGDGAGQVVSLGVRDCSAQRRNQKVIEETPPVNVSDEVISGIQEAALRLATAVK 275 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D S + ++LE+N + G+T + G +L+ WMV+ Sbjct: 276 YRSAGTVEFIYDNDSHEYYFLEVNTRLQVEHGVTEL--------VTGV---DLVSWMVQM 324 Query: 296 ASCL 299 AS Sbjct: 325 ASGD 328 >gi|270290830|ref|ZP_06197054.1| carbamoyl-phosphate synthase, large subunit [Pediococcus acidilactici 7_4] gi|270280890|gb|EFA26724.1| carbamoyl-phosphate synthase, large subunit [Pediococcus acidilactici 7_4] Length = 1057 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L++ G++ + D D + V ++ +PD Sbjct: 29 SGTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ + + A ++ RS VP Sbjct: 89 TLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMKELGEPVPDSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D P +++P G ++ + + + + Q+LIEQ Sbjct: 149 ATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLTLSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G++ + D + +F + + ++ + ++ Sbjct: 209 SIAGMKEIEFEVMRDHADNAIVVCNMENFDPVGIHTGDSIVYAPVQTLSDREVQE-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+ G F DP+ + + +E+N P ++ S + GY ++ Sbjct: 268 ALRIIRALKIEGGCNVQFALDPVQNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/292 (11%), Positives = 87/292 (29%), Gaps = 30/292 (10%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 A+ G++ ++ + V V+ +P G Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + + + T + A D+ + P + + + Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + I P V++P + ++ + + + +H +LI+QY+ G E V Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S + + + ++ +A + + C Sbjct: 758 VSDGHDVVIPGIMEHIERSG---VHSGDSMAVYPAQTLSTTVQNQIVEIATKLARCLRCV 814 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ + + Sbjct: 815 GLMNVQFIV--HDEQVYVIEVNPRASRT----IPLISKVTDLPLARIATKAI 860 >gi|227328912|ref|ZP_03832936.1| putative allophanate hydrolase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1201 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + + +++ Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMRVCYSTTELSDAFETVKRLGQNNFSDAGVFIEKYIERAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V ++ + PA D + + A QA+ Sbjct: 207 HLEVQIFGDGQGDVLALGVRDCSVQRRNQKVIEETPAPNLPDGVADALCAAAISLAQAVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D + + ++LE+N + G+T ++ G +L+ WM+E Sbjct: 267 YRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315 Query: 296 ASCL 299 A+ Sbjct: 316 AAGD 319 >gi|303244549|ref|ZP_07330883.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanothermococcus okinawensis IH1] gi|302485097|gb|EFL48027.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanothermococcus okinawensis IH1] Length = 479 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 33/302 (10%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G ++ + + V ++ +PD Sbjct: 28 SGSQACKSLREEGIYTILVNSNPATIQTDTNIADKVYLEPLHPKIVEKIIEKERPDAILP 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + IL+ + S + S D+ V + Sbjct: 88 TMGGQTGLNLAMDLHRMGILDKYGVELLGSKVEVIETSEDRELFNKAMEEIGEPVTKSHA 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ + P +++P G + ++ + + +++ +Q+LI++ Sbjct: 148 VHSVEEALNAVAELGYPVIVRPAFTLGGSGGGIAHNEEELREITEKGLNYSLINQVLIDE 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D + + ++ + + ++++ ++ Sbjct: 208 SVLGWKEYEYEVMRDAKDNCIVVCNMENMDPMG-IHTGESIVVAPSQTLSDEVHQRLRNA 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G F + +E+N P ++ S + GY ++ Sbjct: 267 ALKIIKHLRIEGGCNVQFAVSKDMTEYRVIEVN--PRVSRSS--ALASKATGYPIAKIAS 322 Query: 291 WM 292 + Sbjct: 323 KI 324 >gi|169350664|ref|ZP_02867602.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552] gi|169292527|gb|EDS74660.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552] Length = 1060 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + + + ++ + +PD Sbjct: 30 GTQACLALKEEGYEVVLCNCNPATIMTDTTIADKVYMEPLTLEFIAKIIRYERPDAILPG 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 + G G + +Q +E+ T S + A + + + V Sbjct: 90 IGGQTGLNLAMQLEKKGILKECQVELLGTRSKSIEQAEDRELFKELCTNLNEPVLPSDIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P V++P G ++ + + + + + Q+LIE+ Sbjct: 150 NSIEEGIEVAKKIGYPVVLRPAFTLGGTGGGFADDEKELKSLIKHALTLSPTHQVLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + I V + ++ + + Y ++ A Sbjct: 210 IKG-YKEIEYEVIRDKNDSAITVCNMENLDPVGIHTGDSIVVCPSQTLTNKEYHMLRDSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S + + +E+N P ++ S + +GY + Sbjct: 269 LKIIRALEIEGGCNVQFALDPKSFQYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 95/307 (30%), Gaps = 38/307 (12%) Query: 8 ISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVL 46 S+ VS +++AG++ I+ + V ++ Sbjct: 569 YSTVHAVS---------TIKNAGYEAIIINNNPETVSTDYTCSDKLYFEPLCVEDVMNII 619 Query: 47 AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 KP L G + +++ T + A + D + Sbjct: 620 ELEKPIGVIATLGGQTAINLANPLSELGVKLIGTDCTGIERAENRDVFEKLLDKLNIPQA 679 Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166 ++ ++ I P +++P + +I D+ + L + + + Sbjct: 680 KGKAVTNVFDGLEVASEIGYPVLVRPSFVLGGRAMQIINNDEQLKHYLKTAVEIDEDKPV 739 Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226 L+++Y+ G E+ + D + + + + I + Sbjct: 740 LVDKYIRGKEVEVDAICDGKDVFIPGIMELVERTGIHSG---DSISVYPTFSISEKVKNT 796 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++ IG G+ F+ D V+ +E+N + T P ++ YS Sbjct: 797 IKEYTTKLGLGIGIIGLFNIQFIVD-KDENVYIIEVNPRSSRT----VPFLSKVTKYSLA 851 Query: 287 ELLLWMV 293 ++ +++ Sbjct: 852 DIATYVI 858 >gi|210623371|ref|ZP_03293768.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275] gi|210153632|gb|EEA84638.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275] Length = 1068 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + ++ ++ +PD + Sbjct: 29 SGTQACQALKEDGKEVILVNSNPATIMTDNAMADKIYIEPLTVTTLKRIIEKERPDSILS 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110 L G +Q LE + + + + D+ K + V Sbjct: 89 TLGGQTALTLSMQLAKEGYLEKMGVKLLGADPETIDKAEDRQMFKDTMLEIGQPVIPSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + ++ + Q+L+E+ Sbjct: 149 VEDLDSAVEFAGKIGYPVIVRPAFTLGGSGGGIANDEEEFKKIAENGLRLSPITQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + +F ++ + + Y+ ++ Sbjct: 209 CISGWKEIEFEVVRDGAGNAITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+G G F +P S + +E+N P ++ S + GY ++ Sbjct: 268 AIKIVDAMGVEGGCNCQFALNPNSDEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 102/287 (35%), Gaps = 34/287 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59 S C AL+ AGF V I D D + L L P+ NV++ Sbjct: 572 SAVHCVWALKKAGFDVVIINNNPETVSTDFDTADRLYFEPLTPEDVMNVMNTEKPYGVVV 631 Query: 60 ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + + + + + + A ++ P ++L Sbjct: 632 AFGGQTAINLTKFLESQGINVLGSSAESIDMAEDRERFDELLESLHIKRPQGHTVLTEDE 691 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI 175 + + + + P +++P +I+ D+ I + S + +LI++Y+ G+ Sbjct: 692 ALKAANELGYPVLMRPSYVLGGQNMIIAFGDEDIKEYMKIILKSNKKDNPILIDKYMMGV 751 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLA 234 E+ + D + P + S +S V P+ + + +++ + Sbjct: 752 EVEVDAICDGEGILI----PGIMEHIERAGVHSGDSIAVCPSWNISEKLKEKIVEYSKQL 807 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276 ++ +G+ ++ K++ +E+N P ++ ++ P Sbjct: 808 AVSLKTKGLVNIQYVI--YEGKIYVIEVNPRSSRTIPYLSKITGVPM 852 >gi|6634660|emb|CAB64527.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34 >gi|291544810|emb|CBL17919.1| carbamoyl-phosphate synthase large subunit [Ruminococcus sp. 18P13] Length = 1064 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 95/290 (32%), Gaps = 32/290 (11%) Query: 26 LEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ G++ D V ++ +P G Sbjct: 580 LKEMGYEAIICNNNPETVSTDFDTADRLYFDPLTKEDVESIIETEQPYGVVVQFGGQTAI 639 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + I T + + +A ++ P +++ + + + + + Sbjct: 640 KLTRHLADMGVNILGTSADDIDAAEDRERFDELLERCQIPRPAGHTVMTMKEAVAAANDL 699 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P +I+ D + + + + +LI++Y+ G E+ + D Sbjct: 700 GYPVLLRPSYVLGGQNMIIAHSDSDVVEYMGIITRTMIENPVLIDKYMMGTEVEVDAICD 759 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGI 243 + + P + S +S V PA+ +I + + + +G+ Sbjct: 760 GTDFLI----PGIMEHIERAGVHSGDSISVYPAQTLSKEIRETIVEYTRRLAMELHVKGL 815 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ + +V+ +E+N + T P ++ G ++ +V Sbjct: 816 VNIQYVV--YNNQVYVIEVNPRSSRT----VPYISKVTGIPMVDIATKLV 859 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL+ G +V I+ + +V V+ KPD + Sbjct: 30 GTQACRALKQEGLEVVLINSNPATIMTDKAMADKIYIEPLTLETVKRVIEIEKPDSVLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G +Q L+ + + + D+ K + G P PS + Sbjct: 90 LGGQTGLTLSMQLAAEGFLDAHNVKLLGADPETIHKAEDRQAFKDTMEKIGEPCIPSKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D I P +++P G + ++ + + Q+LIE+ Sbjct: 150 ETIEDAVDFAEEIGYPVIVRPAFTLGGTGGGIAADEEELRDIAKNGLRLSPITQVLIEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + +F + + Y+ ++ A Sbjct: 210 ISGWKEIEFEVIRDRKGNVITVCSMENFDPVGVHTGDSIVIAPAVTLSDRE-YQMLRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 Q + G F P S + +E+N P ++ S + GY ++ Sbjct: 269 INIIQELKVEGGCNCQFALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATR 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|293365151|ref|ZP_06611868.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis ATCC 35037] gi|307703689|ref|ZP_07640630.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis ATCC 35037] gi|291316601|gb|EFE57037.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis ATCC 35037] gi|307622524|gb|EFO01520.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis ATCC 35037] Length = 1058 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L +PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|262371626|ref|ZP_06064905.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii SH205] gi|262311651|gb|EEY92736.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii SH205] Length = 652 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 7/230 (3%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ V D +G E+ I + A L K SK + Sbjct: 66 NIIEVCKKTGADAVHPG-YGFLSENTDFAQACSDHGITFIGPNAAAIHLMGSKRLSKIAM 124 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GVP P +R ++ I P ++K GG G+ ++ + + L Sbjct: 125 IEAGVPCVPGYEGDRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSADLLEALKT 184 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + S E ++ + + T ++ P Sbjct: 185 ARSEAENAFGSGELIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAP 244 Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + ++ +++ A A +A G +FL D S + ++LE+N + Sbjct: 245 CPVMTPELRQQMGEAAVAAAKACDYIGAGTVEFLLD-HSGEFYFLEMNTR 293 >gi|38505138|gb|AAR23110.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Emericella nidulans] gi|40388397|gb|AAR85468.1| 3-methylcrotonyl-CoA carboxylase biotin-containig subunit [Emericella nidulans] Length = 723 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57 E++L G+ A G +V+ + D A P AFN+ Sbjct: 50 EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104 Query: 58 --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +H G E+ + + A DK SK ++++ GVP Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKRCSKHIMTAAGVP 164 Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157 PS + I P +IK +KGG G+ + + + L Sbjct: 165 CVPSYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +S+ L+ + + V D + + K + LP Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 284 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 DI+ + + A + G +F+FD + + F++E+N + Sbjct: 285 ATRKDIWAKARSAALA----VRYEGAGTVEFIFDNDTGEFFFMEMNTR 328 >gi|322372453|ref|ZP_08046989.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. C150] gi|321277495|gb|EFX54564.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. C150] Length = 1059 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLHQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFASKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D + + P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALIDLNIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KGETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 >gi|258542492|ref|YP_003187925.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01] gi|256633570|dbj|BAH99545.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01] gi|256636629|dbj|BAI02598.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-03] gi|256639682|dbj|BAI05644.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-07] gi|256642738|dbj|BAI08693.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-22] gi|256645793|dbj|BAI11741.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-26] gi|256648846|dbj|BAI14787.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-32] gi|256654890|dbj|BAI20817.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-12] Length = 1179 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 20/183 (10%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + + S + +++ Sbjct: 147 ATRIGYPVMLKSTAGGGGIGMQVCHNETELRDCFAAVSRMGGNNFGDARVFLEKFIACAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239 + + + L+ + PA D ++ + A A+ Sbjct: 207 HVEVQIFGDGKGNILTLGERDCSLQRRNQKVIEETPAPGLSDTTRQGLREAARALGAAVA 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA------GYSFRELLLWMV 293 +F++D S + ++LE+N + + G +L+ WMV Sbjct: 267 YESAGTVEFIYDTESGEFYFLEVNTR----------LQVEHCVTEEVFGI---DLVEWMV 313 Query: 294 EDA 296 A Sbjct: 314 RQA 316 >gi|330837670|ref|YP_004412311.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides DSM 17374] gi|329749573|gb|AEC02929.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides DSM 17374] Length = 1081 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 106/313 (33%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A +PD Sbjct: 29 SGTQAVQALREEGYEVVLVNPNPATVMTTPGIADAIYLEPLTVPYVTDIIARERPDAILT 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + + IL+ + +GI + L+ D+ K++++S G+ S+ Sbjct: 89 TMGGQTGLNLTIELHKKGILDTYGVQVIGAGINSIELAEDRRLFKEIITSLGLESARSVT 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V P +++P +G +I+ ++ + + + ++L+E+ Sbjct: 149 VKSVAEAEAFKKIVGLPLILRPSFTLGGMGGGIIRSEEEFHPAMKHALEASPVGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + K Sbjct: 209 SLLGWKEFELEVMRDKNDNAIIVCSIENVDPMGVHTGDSITVAPIQTLSDQAYQKMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA- 279 + G S F P + ++ +E+N P ++ S FP A Sbjct: 269 IDILRAIGVDCGGSNVQFAVQPGTGRMVVIEMN--PRVSRSSALASKATGFPIARCSAKL 326 Query: 280 YAGYSFRELLLWM 292 G++ E+L + Sbjct: 327 AIGFTLDEVLNEI 339 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL G + I D + S L + L P+ VL G Sbjct: 590 ALRKLGHRTIMINSNPETVSTDFNISDRLYVEPLTPEHVLRVLELEKTRTVVLQLGGQTP 649 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + +++ T ++ A K + + M + Sbjct: 650 LNMMDTLVAHGVKVVGTSPADVSIADDRGKFAALIRKLGLHQSENRTAYSPSEVMTHANE 709 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + + D ++ L + + LL++++++ Sbjct: 710 VGYPVLLRPSHVLGGRNMFIAFDDDAVRGFLDGGVNVSSASPLLVDKFLEDAFEYDL--D 767 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 S + +S ++ P K ++ +++ A A+ +G Sbjct: 768 AVSDGTSLYIGGILQHIEAAGIHSGDSAAVFPPYKSTPEVLNAMRKAALDLACALSIKGF 827 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 F +++ +E+N + T P ++ +G E+ + + E Sbjct: 828 MNIQFAV--KDGQLYVIEVNPRASRT----VPFISKASGVDLVEVAVRVWE 872 >gi|193084131|gb|ACF09797.1| carbamoyl-phosphate synthase large chain [uncultured marine group III euryarchaeote SAT1000-53-B3] Length = 1062 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 100/303 (33%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG C SAL +AG V ++ + S+ ++ KPD Sbjct: 22 SGSQCCSALREAGHTVVLVNSNPATIQTDPETADIVYIEPMTVESLTRIIEKEKPDAIIP 81 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G G + + L+ + + + + ++ D+ R K + V Sbjct: 82 GMGGQTGLNLTIDLHKAGVLQKHGMKILGTSLKSIEMAEDRNLFRKKMIEIGEPVAESGI 141 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + P V++P G + + + + + + + QLLIE+ Sbjct: 142 AQTINQSLKLAEKLDYPVVVRPAFTLGGTGGGIAYNENELEIIAGRGLTLSPVKQLLIEE 201 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229 + G + D I + + S V PA D Y++++ Sbjct: 202 SILGWLEFEFEVLRDEDDNAIIVCSMENLDPM--GVHTGESIVVAPALTLPDTAYQKLRT 259 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A +++G G F ++ + +E+N P ++ S + G + Sbjct: 260 SALKVVRSLGIVGGCNVQFAYNSKTEDYILIEVN--PRVSRSS--ALASKATGVPIARIA 315 Query: 290 LWM 292 + Sbjct: 316 SML 318 Score = 44.9 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 37/293 (12%) Query: 24 SALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF 62 A+ AG++ + D D SV +L KP L G Sbjct: 574 QAVRKAGYEAVVVNNNPETVSTDFDASDRLYFEPLDAESVFEILDAEKPYGIILQLGGQT 633 Query: 63 GEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 + + I T + +A K + +P + Sbjct: 634 AVNLASEVEAHIKKEKLKTRILGTKVRDMDAAEDRGKCGELMRKAGIKMPKWAIAKSSDE 693 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175 + I P +++P G+ ++ D+ + L S +L++++++G I Sbjct: 694 VITRAEEIGFPVLVRPSFVLGGRGMEIVHNDKQLKKYLRLESHATPKRPVLVDKFLEGAI 753 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 EL ++ D V + + + +S ++ + P I + EV +++ Sbjct: 754 ELDVDLISDGKKVVIGAIMEQIEMAG---VHSGDSACVMPPQSISKKLEDEVIKISKKVA 810 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G + VF LEIN + T P ++ GY L Sbjct: 811 KKMKIIGAANLQLAI--KDSNVFLLEINPRASRT----LPFVSKSTGYPLARL 857 >gi|126696383|ref|YP_001091269.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9301] gi|126543426|gb|ABO17668.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9301] Length = 1098 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 101/315 (32%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL +AG+++ I+ + + V ++ KPD Sbjct: 29 SGTQACKALRNAGYEIVLINSNPASIMTDPEVASKTYIEPLTPEIVSQIILREKPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ I + + A + D+ K+ + V VCPS + Sbjct: 89 TMGGQTALNLAVKLSESNFLKQNNIELIGADLRAINKAEDRQLFKESMEKINVNVCPSGI 148 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + S P +I+P +G + + + +Q+LIE Sbjct: 149 ASNLDEAIEVSRKICSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFAINPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 >gi|226953227|ref|ZP_03823691.1| urea carboxylase [Acinetobacter sp. ATCC 27244] gi|226836017|gb|EEH68400.1| urea carboxylase [Acinetobacter sp. ATCC 27244] Length = 1201 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 22/255 (8%) Query: 56 NVLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCP 109 N +H +G +L E + A L + +P Sbjct: 76 NAIHPGYGFLSENAEFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQ 135 Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + I P ++K GG +G+ ++ + + S + Sbjct: 136 LLADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFTTVSYLAQANFKDAG 195 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQ 228 Y++ + + V ++ + PA D + +Q Sbjct: 196 LYLEKFVQNARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNDQQRSYIQ 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284 +A Q++ R +F+ D ++ ++LE+N + G+T G Sbjct: 256 TVAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNTRLQVEHGVTE--------QVYGV- 306 Query: 285 FRELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 307 --DLVEWMVTLASGD 319 >gi|50954778|ref|YP_062066.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951260|gb|AAT88961.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1093 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L + G +V + D D + ++A KP+ Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYVEPITWEVIETIIAKEKPEAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQ--VVSSCGVPVCPS 110 L G + +LE + + A D+ K + + V Sbjct: 89 TLGGQTALNEAMQLHEHGVLEKYGVELIGAKFEAIQKGEDRQIFKDLVIAAGADVARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG + + + + ++L+E+ Sbjct: 149 AHTVEEALAFADDLGYPLVVRPSFTMGGLGSGFAYTSEELRRIVGDGIHQSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D T + + + + + K Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQKLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F DP +V +E+N P ++ S + G+ ++ Sbjct: 269 IDIIRAVGVDTGGCNIQFAVDPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|78221881|ref|YP_383628.1| carbamoyl phosphate synthase large subunit [Geobacter metallireducens GS-15] gi|78193136|gb|ABB30903.1| carbamoyl-phosphate synthase large subunit [Geobacter metallireducens GS-15] Length = 1066 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ ++ + ++ ++ +PD Sbjct: 29 SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYIEPLNVDTLTEIIRKERPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 L G + L G+ A+ + R + + + + Sbjct: 89 NLGGQTGLNLSSALAQAGVLDRYGVRVIGVNLDAIKRGEDRETFKETMTRLGIETARSEI 148 Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 TM+ I P VI+P G + + + + + Q+L+E+ Sbjct: 149 ATTMEGALDVVSRIGLPVVIRPAYTMGGTGGGFAYNMEEFRTIVARGLAASPVSQILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G E + + + + + + T + I ++ +Q Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSYCTAPM-LTISSELQARLQDY 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ AI G + F DP + +V +EIN + T S + G+ ++ Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA-MVS 322 Query: 291 WMV 293 ++ Sbjct: 323 SLL 325 Score = 42.2 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 31/284 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D D V + A KP+ G Sbjct: 580 ALREAGYETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIHAKEKPEGVVVQFGGQTP 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V+ + I T + A + P + Sbjct: 640 LNIAVELEAAGVRIIGTTPETIDLAEDRQRFARVMTELGIPQPESGMASTLDEALAVAGR 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ ++ + + ++ + +LI+++++ Sbjct: 700 IDYPLMVRPSYVLGGRAMEVVHDEEMLREYVTKAVDVSPERPILIDRFLEN---AIEAEA 756 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T+ VP + S +S V+P + + A+G G Sbjct: 757 DAISDGTDAFVPAVMEHIELAGVHSGDSACVIPPVSIPQKHIDTIDEYTRKIAVAMGVVG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + + V+ LE N + T P ++ Sbjct: 817 LMNIQYAI--ADNTVYILEANPRASRT----VPLVSKVCNIPMP 854 >gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] Length = 1411 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 33/302 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + ++ ++ KPD + Sbjct: 30 GSQACKALKEQGLEVVLVNSNPATLMTDHTMADQIYIEPLIPETIQRIIEKEKPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPS 110 L G G ++ LE + + + D+ K + +P Sbjct: 90 LGGQTGLTLSMELAKSGFLENHGVKLLGAKPETIDKAEDRQMFKDTMLAIGEPCIPSKVV 149 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +I+P G ++ D+ + + Q+L+E+ Sbjct: 150 TTYEDALDFVKNEIGYPAIIRPAFTLGGTGGGIVHNDEEMDEIAHNGLHRSPIHQILVEK 209 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S +F + + Y+ ++ Sbjct: 210 CISGWKEIEFEVMRDSAGNVLTVCSMENFDPVGVHTGDSIVIAPT-VTLSDKEYQMLRSA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A ++G G F +P S + +E+N P ++ S + GY ++ Sbjct: 269 ALNIISSLGMEGGCNCQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 324 Query: 291 WM 292 + Sbjct: 325 LI 326 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 93/289 (32%), Gaps = 30/289 (10%) Query: 21 ACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GN 61 C AL+ G+ V I D D S L L P+ +V++ Sbjct: 607 QCVWALKRLGYDVVTINNNPETVSTDFDTSDRLYFEPLTPEDVMSVVNTEKPVGVVVAFG 666 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + L+ I + + L+ D+ R +++ + + + + Sbjct: 667 GQTAIKLTKFLDSQGIRILGTSADSIDLAEDRERFEELCEKLHINRPKGLTIFTEEEALE 726 Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P +++P +I+ D + + + + +LI+QY+ G EL Sbjct: 727 ATQKLGYPVLLRPSYVLGGQNMIIAFNDDDVKEYMKIILAQGIENPVLIDQYMMGTELEV 786 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + + S I + R LA +G Sbjct: 787 DAICDGKDILIPGIMEHIERTGIHSGDSIAVYPSWNLNDILREKIINQSRELALA---LG 843 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +G+ +L + ++ +E+N + T P ++ +L Sbjct: 844 TKGLVNIQYLI--YNNDLYIIEVNPRSSRT----VPYISKVTNVPMVDL 886 >gi|295396982|ref|ZP_06807101.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans ATCC 11563] gi|294974782|gb|EFG50490.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans ATCC 11563] Length = 1059 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL++ G++V I+ + + V +L KPD Sbjct: 30 GTQACFALKEEGYEVVLINSNPATIMTDRKMADKIYIEPITEEMVSKILYEEKPDAILPS 89 Query: 58 LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + +E+ T+ + A + ++ VP + Sbjct: 90 LGGQTGLNMALTLDASGILEELDIELIGTNLKAIDQAEDRELFKNLMTSIGQPVPDSTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + S+ + + Q LIE+ Sbjct: 150 HTVDEAVDFANEIGYPIIVRPAFTMGGSGGGICEDQASLEKIVKNGLILSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + + +A Sbjct: 210 IAG-YQEIEYEVMRDGAGVAKVITSMENFDPVGVHTGDSIVFAPNQSLDQAQNDMLADVA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 QA+ G P +++ + +E+N P ++ S + G+ + Sbjct: 269 IKIIQALEIEGGCNVQLALKPDTQEYYIIEVN--PRVSRSS--ALASKATGFPIARVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 99/297 (33%), Gaps = 33/297 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ AG++ I+ + +V ++ +P G Sbjct: 579 CVKALQKAGYEALIINSNPETVSTDFSISDKLFFEPVTFENVMAIIEREQPIGVMIQFGG 638 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFT 117 + L+ I + + + D+ +Q ++ + + + Sbjct: 639 Q--TAINLANDLKEAGIQILGTSVEDMNRAEDRKLFEQALTQLNIAQPEGDTALSLEEAL 696 Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 + + P +++P G+ V+ ++++ + + + +H + +D Sbjct: 697 AIPEKIGGYPVLVRPSFVLGGRGMEVVYDEENLTTYMNDALAESHKLKQEAPILIDHYVQ 756 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236 V DA D T++ +P + S +S V P + + ++ Sbjct: 757 GIEVEVDAICDGTDVFIPGIMEHIEAAGVHSGDSMAVFPTQRLSQAVIDQIIDETIKIGN 816 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G G+ F+ + KVF +E+N + T P ++ ++ ++ Sbjct: 817 GLGTIGMVNIQFIV--ENDKVFIIEVNPRASRT----VPFLSKVTDIEIAQIATNVI 867 >gi|242053347|ref|XP_002455819.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor] gi|241927794|gb|EES00939.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor] Length = 1171 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL + G++V + D D V ++ +PD Sbjct: 97 SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIDAERPDALLP 156 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L+ L + + + A + D+ KQ + G+ PS + Sbjct: 157 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 216 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + P +++P G + + +H Q+L+E Sbjct: 217 GTTLEECLAIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 276 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + Sbjct: 277 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 336 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P +V +E+N P ++ S + G+ ++ Sbjct: 337 SVAIIREIGVECGGSNVQFAVNPADGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 392 Query: 290 LWM 292 + Sbjct: 393 AKL 395 >gi|210610312|ref|ZP_03288341.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787] gi|210152542|gb|EEA83548.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787] Length = 1057 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 29/286 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 ++ AG++ I+ + V ++ +PD L G Sbjct: 576 QTIQSAGYEAIIINNNPETVSTDYTCSDKLYFEPLCVEDVMNIIELEQPDGVIATLGGQT 635 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T + A + D P ++ + + + Sbjct: 636 AINLAEPLRARGVNIIGTDCDAIERAENRDSFEKLLASLHIPQPKGQAVTSIEDGIRAAN 695 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + ++ K++++ L + N +L+++Y+ G E+ + Sbjct: 696 EIGYPVLVRPSFVLGGRAMQIVAKEEALRNYLKTAVEINEEKPVLVDKYIRGKEVEVDAV 755 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S + + I + + + IG G Sbjct: 756 CDGKNVFVPGIMELVERTG---VHSGDSISIYPTHSISEKVKETILDYTQKLGLGIGIIG 812 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + F+ D V+ +E+N + T P ++ GYS ++ Sbjct: 813 LFNIQFIVDEFEN-VYIIEVNPRSSRT----VPFLSKATGYSLADI 853 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + + V ++ + +PD Sbjct: 30 GTQACLALKEEGYEVVLCNSNPATIMTDTSIADKVYMEPLTLEYVAKIVRYERPDAILPG 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110 + G G + +Q + + + +L + +S + + V Sbjct: 90 IGGQTGLNLAMQLE-KKGILAECRTELLGTKISSIERAEDRELFKELCEELGEPVLPSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G ++ + + + S + Q+LIE+ Sbjct: 149 ASSIEEGLKVAEKIGYPLVLRPAFTLGGTGGGFADNEEELVALMKNALSLSPVHQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I + + ++ + + Y+ ++ Sbjct: 209 SIKG-YKEIEYEVMRDSNDTAITICNMENLDPVGIHTGDSIVVCPSQTLTNKEYQMLRYS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +A+G G F DP S + + +E+N P ++ S + +GY + Sbjct: 268 ALKIIRALGIEGGCNVQFALDPHSFQYYLIEVN--PRVSRSS--ALASKASGYPIARVSA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|150400482|ref|YP_001324248.1| carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus aeolicus Nankai-3] gi|150013185|gb|ABR55636.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus aeolicus Nankai-3] Length = 479 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 93/294 (31%), Gaps = 32/294 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFN 56 SG +L + G ++ D+ + ++ +PD Sbjct: 28 SGSQACKSLREEGIYTILVNSNPATIQTDKDIADKVYLEPLNPKIVEKIIEKERPDAILP 87 Query: 57 VLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G G + + + L + G + + R + + + Sbjct: 88 TMGGQTGLNLAVDLHRMGILEKYGVKLLGSTVDVIETSEDRELFNKAMDEIGEPVTKSYA 147 Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +++ + P +++P G + ++ + + + +++ +Q+LI++ Sbjct: 148 VESIEKALEAVEELGYPVIVRPAFTLGGTGGGIPYTEEELRDIVEKGLNYSMINQVLIDE 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + ++ + + +++ ++ Sbjct: 208 SVLGWKEYEYEVMRDAKDNCIIVCNMENIDPMG-IHTGESIVVAPSQTLSDKMHQRLRNA 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A + + G F P + +E+N P ++ S + GYS Sbjct: 267 ALKIIRHLNIIGGCNVQFSVSPDDSEYRVIEVN--PRVSRSS--ALASKATGYS 316 >gi|294651512|ref|ZP_06728824.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC 19194] gi|292822600|gb|EFF81491.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC 19194] Length = 649 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 7/230 (3%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ D +G E+ I + A L K SK + Sbjct: 67 NIIEACKKTGADAVHPG-YGFLSENTDFAQACNDHGITFIGPNAAAIHLMGSKRLSKIAM 125 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GVP P +R ++ I P ++K GG G+ ++ + + L Sbjct: 126 IEAGVPCVPGYEGDRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSTDLLEALKT 185 Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216 + S E ++ + + T ++ P Sbjct: 186 ARSEAENAFGSGELIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAP 245 Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + ++ +++ A A +A G +FL D S + ++LE+N + Sbjct: 246 CPVMTPELRQQMGEAAVAAAKACDYIGAGTVEFLLD-QSGEFYFLEMNTR 294 >gi|323485581|ref|ZP_08090925.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum WAL-14163] gi|323692929|ref|ZP_08107151.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673] gi|323401099|gb|EGA93453.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum WAL-14163] gi|323503012|gb|EGB18852.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673] Length = 1070 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL++ G+++ + DV + ++ +PD Sbjct: 28 SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIDKERPDALLP 87 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G G + + +L+ + + A D++ K + S G+ + S + Sbjct: 88 NLGGQSGLNLCSELAAAGVLDKYNVKVIGVQVDAIERGEDRIEFKHAMESLGIEMARSEV 147 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 148 AYTVEHALEIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + + ++ + I ++ K +Q Sbjct: 208 SILGWEELELEVVRDAKNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKRLQEK 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 ++ +AI G + + DP + + +EIN + T S + G+ L+ Sbjct: 267 SYKIVEAIEVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA-LVS 321 Query: 291 WMV 293 M+ Sbjct: 322 AML 324 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 101/323 (31%), Gaps = 47/323 (14%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ A AL++ GF+ + D D S Sbjct: 553 IMILGGGPN-------RIGQGIEFDYCCVHAAIALKELGFETIIVNCNPETVSTDYDTSD 605 Query: 43 GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90 L L + ++ H G + + I T + A Sbjct: 606 KLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTPLNLAADLKKYGVTILGTTPETIDMAED 665 Query: 91 MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 D R +P + + + I P +++P G+ V+ D+++ Sbjct: 666 RDLFRDMMDKLQIPMPESGMAVNVDEALVIANRIGYPVMVRPSYVLGGRGMEVVHDDEAL 725 Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210 + ++ +LI++++ DA D + VP + S + Sbjct: 726 TYYMKEAVGVTPDRPILIDRFL---HHATECEADAISDGENVFVPAVMEHIELAGIHSGD 782 Query: 211 STHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 S +LP++ D ++ + + G+ + +V+ LE N + T Sbjct: 783 SACILPSRNLTKDQVDTIRDYTSRIAKEMHVVGLMNMQYAI--EDGEVYVLEANPRASRT 840 Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292 P ++ +L + Sbjct: 841 ----VPLVSKVCNIKMVKLATDI 859 >gi|6634639|emb|CAB64513.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634657|emb|CAB64525.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634663|emb|CAB64529.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634681|emb|CAB64533.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634687|emb|CAB64537.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34 >gi|123968578|ref|YP_001009436.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. AS9601] gi|123198688|gb|ABM70329.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. AS9601] Length = 1098 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/315 (13%), Positives = 99/315 (31%), Gaps = 41/315 (13%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL +AG++V I+ + + V ++ KPD Sbjct: 29 SGTQACKALRNAGYEVVLINSNPASIMTDPEIASKTYIEPLTPEIVSQIILREKPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113 + G + V+ I A +++K +++ + ++ Sbjct: 89 TMGGQTALNLAVKLSESDFLKENNVELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148 Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + S+ + S P +I+P +G + + + + +Q+LIE Sbjct: 149 ASNLDEAVEVSKKISSYPLIIRPAFTLGGVGGGIAFNLEEFVVLCKSGLEESPSNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + + D I + + + + + Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288 + + G S F +P + +V +E+N P ++ S + G+ ++ Sbjct: 269 SLKIIREVGVETGGSNIQFALNPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 289 --------LLWMVED 295 L ++ D Sbjct: 325 ALLSVGYTLDEIIND 339 >gi|225027058|ref|ZP_03716250.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353] gi|224955522|gb|EEG36731.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353] Length = 1188 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 85/282 (30%), Gaps = 37/282 (13%) Query: 19 GKACASALEDAGF--------------------KVSQIDVDR----------SVGLVLAH 48 AL + G + ++ D+ ++ + Sbjct: 20 AIRVFRALSELGIGSVAVYSKEDRYALFRTKADEAYPLNPDKGPVDAYLDIPTIIRIAKE 79 Query: 49 LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108 K D +G E+ +I + + A + DK+ +K+ VP+ Sbjct: 80 KKVDAIHPG-YGFLSENPEFAEACRKNDIVFIGPNVEAMNIMGDKISAKRAAEESKVPII 138 Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 I M I P ++K GG G+ +++ + + +S + + Sbjct: 139 DGSDFIIHDVDTAMKIADEIGYPVMLKASNGGGGRGMRIVQSQEEMEEAFEKSRNESKRV 198 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223 + +++ + + L + L+ + P I + Sbjct: 199 FGEAKLFIEKYLIHPKHIEVQILGDNYGNIVHLYDRDCSLQRRNQKVIEFAPAWSISEET 258 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 K++ A + +G +FL D +++E+N + Sbjct: 259 RKKILDSAKRLARRVGYTNAGTMEFLVDEEEH-PYFIEMNPR 299 >gi|157737613|ref|YP_001490296.1| carbamoyl phosphate synthase large subunit [Arcobacter butzleri RM4018] gi|157699467|gb|ABV67627.1| carbamoylphosphate synthase, large subunit [Arcobacter butzleri RM4018] Length = 1081 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V I+ + V ++ D Sbjct: 29 SGTQATKTLKELGYRVVLINSNPATIMTDPEFADKTYIEPITEEVVAKIIEKENIDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE ++ H + +P + Sbjct: 89 TMGGQTALNVATSMYEKGMLEGIKFLGAHPDSIKKGEDRHLFNEAMKKIGMDLPKSANAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + I P + + + G V + + + +++ I + + Sbjct: 149 TLEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKVLAASGIEASPINEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQDMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 89/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD ++H + L + L+ D Sbjct: 611 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTKAGAKIIGTTAEVIDLAED 667 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V G+ + + ++ I P +++P G+ ++ + Sbjct: 668 RKKFSAFVEKIGLLQPENGTAVEVTEAIEIAEKIGYPVLVRPSFVLGGRGMKIVYSTDEL 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ S ++ +LI++++D IEL + D + + Sbjct: 728 KQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCISDGKEVYIGGIMQHIEEAGIHSG---D 784 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I D+ KE++ +G G+ + + +++ +E+N + T Sbjct: 785 SACSLPPVSISDDLIKELETKTKEMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 842 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 843 ----VPFVSKATGMPLAKVATR 860 >gi|269215538|ref|ZP_06159392.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC 700122] gi|269131025|gb|EEZ62100.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC 700122] Length = 1091 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 36/313 (11%), Positives = 91/313 (29%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56 SG L+D G++V ++ + ++ +PD Sbjct: 29 SGTQACKVLKDEGYEVVLVNSNPATIMTDPALVDRTYVEPITPDFIERIIEAERPDALLA 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G + +LE + + A D+ + ++ + Sbjct: 89 TIGGQTALNAAVSLARSGVLERFGVELIGCDLPAIETGEDRKLFAEAMADIGVEIARSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P V++P G + + + Q + ++L+E+ Sbjct: 149 AYALDDALALAESIGYPVVLRPSFTLGGAGGGIAHDANELRDIVSQGLELSPTGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 ++G + + + I + + + ++ + Sbjct: 209 SIEGWKEYEMEVMRDTAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDIEYQRMRAAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + + G S F +P ++ +E+N P ++ S + AA Sbjct: 269 LAILERVGVETGGSNVQFAVNPTDGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326 Query: 280 YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 327 AVGYTLDEIMNDI 339 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254039945|gb|ACT56741.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 32/255 (12%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116 +G E+ ILE I + + DK+ +K+ G+PV P + Sbjct: 82 YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQY 171 M I P ++K GG G+ + + + + Q+ S + + + + Sbjct: 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + + + GD + K + V+ A+ +I + Sbjct: 202 ENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGE----TC 257 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSF 285 A + I RG +FL+ + + +++E+N + + G Sbjct: 258 VKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTR----------LQVEHPVTEAITGI-- 303 Query: 286 RELLLWMVEDASCLR 300 +L+ + AS R Sbjct: 304 -DLVHEQIYVASENR 317 >gi|6634645|emb|CAB64517.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634648|emb|CAB64519.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 34 >gi|304386350|ref|ZP_07368683.1| carbamoyl-phosphate synthase, large subunit [Pediococcus acidilactici DSM 20284] gi|304327707|gb|EFL94934.1| carbamoyl-phosphate synthase, large subunit [Pediococcus acidilactici DSM 20284] Length = 1057 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L++ G++ + D D + V ++ +PD Sbjct: 29 SGTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQIIRKERPDAILP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ + + A ++ RS VP Sbjct: 89 TLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMKELGEPVPDSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D P +++P G ++ + + + + Q+LIEQ Sbjct: 149 ATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLTLSPVTQVLIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G++ + D + +F + + ++ + ++ Sbjct: 209 SIAGMKEIEFEVMRDHADNAIVVCNMENFDPVGIHTGDSIVYAPVQTLSDREVQE-LRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A L +A+ G F DP+ + + +E+N P ++ S + GY ++ Sbjct: 268 ALLIIRALKIEGGCNVQFALDPVQNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/292 (11%), Positives = 87/292 (29%), Gaps = 30/292 (10%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 A+ G++ ++ + V V+ +P G Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + + + T + A D+ + P + + + Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + I P V++P + ++ + + + +H +LI+QY+ G E V Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S + + + ++ +A + + C Sbjct: 758 VSDGHDVVIPGIMEHIERSG---VHSGDSMAVYPAQTLSTTVQNQIVEIATKLARCLRCV 814 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ + + Sbjct: 815 GLMNVQFIV--HDEQVYVIEVNPRASRT----IPLISKVTDLPLARIATKAI 860 >gi|268611000|ref|ZP_06144727.1| urea carboxylase [Ruminococcus flavefaciens FD-1] Length = 990 Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +GI + + + + + +V+ Sbjct: 147 AERIGYPVMLKSTAGGGGIGIRICENAEELEDSFDNVRHLAENNFNDGGVFVEKYIKIAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + ++ + PA + + +++ R A + G Sbjct: 207 HVEVQIFGNEYGETAVIGERDCSVQRRNQKVVEECPAPCLSESVRQDMFRAAKSLAKTSG 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +FL+D K ++LE+N + G+T G +L+ M+++ Sbjct: 267 YRNAGTVEFLYDASCEKFYFLEVNTRLQVEHGITE--------EVYGV---DLVEMMIKE 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|94987381|ref|YP_595314.1| carbamoylphosphate synthase large subunit (split gene in MJ) [Lawsonia intracellularis PHE/MN1-00] gi|94731630|emb|CAJ54993.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Lawsonia intracellularis PHE/MN1-00] Length = 1076 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+ V + D +V ++ +P Sbjct: 29 SGTQGIKALKEEGYNVVLVNSNPATIMTDPTLANHTYIEPLELETVTAIIRKERPCALLP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + E+ + ++ A S +K R VP Sbjct: 89 TLGGQTALNIALNLAKSGILHECGTELIGASADVIEKAESREKFRQSMENIGLKVPSSAI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G + + + L +Q + + ++++IEQ Sbjct: 149 AKTIEEVHQIALNIPFPVIVRPAFTLGGTGGGIAYNMEDLELIAIQGLTASPTNEVMIEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + ++ K Sbjct: 209 SVIGWKEFEMEVVRDAADNCIIICSIENLDPMGIHTGDSITVAPAQTLSDIEYQKMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVKTGGSNIQFGVNPKNGELVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 10/262 (3%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++A +PD G + + + + I T + Sbjct: 616 DRLYFEPLTF---EDVMNIIAQEQPDGVVVQFGGQTPLNLALPLVRAGVPILGTSPEAID 672 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + + ++ P + I P V++P + +I + Sbjct: 673 RAENRSRFQALLQKLKLQQPANGTATSINEAASIAKTIGYPIVVRPSYVLGGRAMQIIYE 732 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + D+ ++ + V + IA + Sbjct: 733 EKELIHYFSLYGKDCNLDRPILIDQFLEYAIEVDVDALSDGTNVYIAGVMEHIEE-AGIH 791 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S +S + P + ++ ++++ + + G+ F ++ LE+N + Sbjct: 792 SGDSSCVIPPHSLSQELIEDIKSQTTALAKELQVIGLMNIQFAI--KDNVIYILEVNPRA 849 Query: 267 GMTPVSIFPEMAAYAGYSFREL 288 T P ++ G L Sbjct: 850 SRTT----PFVSKATGVPLPYL 867 >gi|302561741|ref|ZP_07314083.1| carbamoyl-phosphate synthase, large subunit [Streptomyces griseoflavus Tu4000] gi|302479359|gb|EFL42452.1| carbamoyl-phosphate synthase, large subunit [Streptomyces griseoflavus Tu4000] Length = 1102 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/308 (11%), Positives = 84/308 (27%), Gaps = 37/308 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V ++ + V ++A +PD Sbjct: 29 SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88 Query: 57 VL------------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104 L HGN + ++ + + K++ Sbjct: 89 TLGGQTALNTAISLHGNGVLEKYGVELIGANVEAIHKGEDRDLFKEVVEEVRKKIGHGES 148 Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 ++ + L P V++P G ++ + Q + + Sbjct: 149 ARSHICHSMDDVLRGVEALGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++L+E+ + G + + D + +F + + + Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + + G F +P +V +E+N P ++ S + G+ Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324 Query: 285 FRELLLWM 292 ++ + Sbjct: 325 IAKIAAKL 332 >gi|315637389|ref|ZP_07892602.1| carbamoyl-phosphate synthase, large subunit [Arcobacter butzleri JV22] gi|315478281|gb|EFU69001.1| carbamoyl-phosphate synthase, large subunit [Arcobacter butzleri JV22] Length = 1081 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G++V I+ + V ++ D Sbjct: 29 SGTQATKTLKELGYRVVLINSNPATIMTDPEFADKTYIEPITEEVVAKIIEKENIDAILP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE ++ H + +P + Sbjct: 89 TMGGQTALNVATSMYEKGMLEGIKFLGAHPDSIKKGEDRHLFNEAMKKIGMDLPKSANAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 + I P + + + G V + + + +++ I + + Sbjct: 149 TLEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKVLAAAGIEASPINEIEIMESM 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQDMRNASFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 89/262 (33%), Gaps = 15/262 (5%) Query: 33 VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92 ID V V+ PD ++H + L + L+ D Sbjct: 611 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTKAGAKIIGTTAEVIDLAED 667 Query: 93 KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150 + + V G+ + + ++ I P +++P G+ ++ + Sbjct: 668 RKKFSAFVEKIGLLQPENGTAVEVTEAIEIAEKIGYPVLVRPSFVLGGRGMKIVYSTDEL 727 Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + ++ S ++ +LI++++D IEL + D + + Sbjct: 728 KQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCISDGKEVYIGGIMQHIEEAGIHSG---D 784 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 ++ + P I D+ KE++ +G G+ + + +++ +E+N + T Sbjct: 785 SACSLPPVSISDDLIKELETKTKEMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 842 Query: 270 PVSIFPEMAAYAGYSFRELLLW 291 P ++ G ++ Sbjct: 843 ----VPFVSKATGMPLAKVATR 860 >gi|228902391|ref|ZP_04066546.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis IBL 4222] gi|228857248|gb|EEN01753.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis IBL 4222] Length = 1018 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLGEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|228909713|ref|ZP_04073536.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis IBL 200] gi|228850002|gb|EEM94833.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis IBL 200] Length = 1018 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|228966839|ref|ZP_04127883.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar sotto str. T04001] gi|228792938|gb|EEM40496.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar sotto str. T04001] Length = 1018 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92 V ++ +PD L G G + + + + + IL + L D Sbjct: 18 EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76 Query: 93 KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 R+ + +P I + I P +++P G + ++ + Sbjct: 77 LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136 Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212 + + Q L+E+ + G + + S D + + + Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196 Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272 + Y+ ++ + +A+G G DP S + + +E+N P ++ S Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253 Query: 273 IFPEMAAYAGYSFRELLLWM 292 + GY +L + Sbjct: 254 --ALASKATGYPIAKLAAKI 271 >gi|75763136|ref|ZP_00742909.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489373|gb|EAO52816.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 975 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++AG++ ++ + V ++ KP+ G Sbjct: 483 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 542 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A DK + PV + + Sbjct: 543 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 602 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + + +LI++Y+ G E+ + Sbjct: 603 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 662 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + +S + P + + +++ + + G+ Sbjct: 663 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 719 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ +V+ +E+N + T P ++ G + ++ Sbjct: 720 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 763 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 5/203 (2%) Query: 90 SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149 D R+ + +P I + I P +++P G + ++ Sbjct: 31 DRDLFRTLMQELNEPIPSSTIIHTLGEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEE 90 Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209 + + + Q L+E+ + G + + S D + + + Sbjct: 91 LIEIVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDS 150 Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269 + Y+ ++ + +A+G G DP S + + +E+N P ++ Sbjct: 151 IVVAPSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVS 207 Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292 S + GY +L + Sbjct: 208 RSS--ALASKATGYPIAKLAAKI 228 >gi|121999139|ref|YP_001003926.1| urea amidolyase-like protein [Halorhodospira halophila SL1] gi|121590544|gb|ABM63124.1| urea amidolyase related protein [Halorhodospira halophila SL1] Length = 1200 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175 I P ++K GG +G+ + ++ +++++ L + G Sbjct: 147 AARIGYPVMLKSTAGGGGIGMQLCHDAAALREAYDSVRRLSANNFSNDGLFLEKYVEHGR 206 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + + GD V + + + + D + + A Sbjct: 207 HIEVQLFGDGCGTVIALGERDCSLQ----RRNQKVVEETPAPGLDADTRQALLDAAERLG 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291 + + R +++ D + ++LE+N + G+T A G +L+ W Sbjct: 263 RQVAYRSAGTVEYILDADTGAFYFLEMNTRLQVEHGVTE--------AVTGI---DLVGW 311 Query: 292 MVEDAS 297 MVE A+ Sbjct: 312 MVEAAA 317 >gi|6634684|emb|CAB64535.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ +L+ +V+ A Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34 >gi|15606634|ref|NP_214014.1| biotin carboxylase [Aquifex aeolicus VF5] gi|2983860|gb|AAC07413.1| biotin carboxylase [Aquifex aeolicus VF5] Length = 477 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 53/315 (16%) Query: 22 CASALEDAGFKVSQID---------VDRSVGLVLAHLKP-----DLAFN----------V 57 A ++ G K I V ++ L P D Sbjct: 17 IIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYLDYVRIVDLAKQVGADA 76 Query: 58 LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110 +H G E+ I + + DK+++K+V+ G+P P Sbjct: 77 IHPGYGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAKKVMKEVGLPTIPGTEEP 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQ 165 + + I P ++K GG G+ VI+ ++ + + + + GD Sbjct: 137 VRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELEKNFESAFREAETFFGKGDL 196 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 + + + + ++GD ++ + K + + LP D+ Sbjct: 197 FIEKYVENPKHIEVQILGDKYGNIIHLGERDCSIQRRHQKLIEIAPSPKLPQ----DLRM 252 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA---G 282 ++ A A +G +FL D + + +++E+N + + Sbjct: 253 KILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMNTR----------LQVEHTITEA 302 Query: 283 YSFRELLLWMVEDAS 297 + +++ M+ A+ Sbjct: 303 ITGVDIVEAMIRIAA 317 >gi|307721321|ref|YP_003892461.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Sulfurimonas autotrophica DSM 16294] gi|306979414|gb|ADN09449.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Sulfurimonas autotrophica DSM 16294] Length = 475 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 97/308 (31%), Gaps = 46/308 (14%) Query: 21 ACASALEDAGFKVSQIDVD--------------RSVGLVLAHLKPDLAFNVLHGNFGEDG 66 A S ++ G V + D +++ + + D +G E Sbjct: 32 AIFSEVDKDGVWVQKADNSFAISGDPVEAYLDYKNLINIAMRTRCDAIHPG-YGFLSESA 90 Query: 67 LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQH 122 E +I + AL DKM SK V GVPV ++ + Sbjct: 91 EFAKACEENDIIFIGPKAEHIALFGDKMASKTAVKKVGVPVLEGTVEPVMDAKEGEQIAS 150 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIEL 177 I P +IK GG G+ ++ + + G+ + + + + Sbjct: 151 EIGFPVIIKAAFGGGGRGMRIVHNAKEFQELFESATNEAIKYFGKGEVFIEKFVQNPRHI 210 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ D +V + + ++ K++ + A A Q Sbjct: 211 EVQIVADKYGNVVHLGERDCSIQ----RRHQKVIEIAPSPRLSDATRKKLCQTAVNAVQE 266 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292 IG + +FL D +++E+N P +T + S +++ M Sbjct: 267 IGYENVGTVEFLVDDNDD-FYFIEMNTRVQVEHP-VTEI-----------ISGVDIIQRM 313 Query: 293 VEDASCLR 300 +E A + Sbjct: 314 IEIAGGDK 321 >gi|170288181|ref|YP_001738419.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2] gi|226700943|sp|B1L8T8|CARB_THESQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|170175684|gb|ACB08736.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2] Length = 1099 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 103/299 (34%), Gaps = 33/299 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ AG++V + D + S + ++ +PD Sbjct: 29 SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V + IL+ + + + + + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVELAERGILDKYGVQLIGAKLDSIKKAEDRELFKETMEKAGLEVLRSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +I+P G + ++ + + + + +LIE+ Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + + + ++ Y+ ++ Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A AIG G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 268 AHKVIDAIGIETGGSNIQFAVDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322 Score = 42.6 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 93/290 (32%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++ + D D V ++ + KP G Sbjct: 575 AFQEEGYETIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLEIVRNEKPKGVVVAFGGQTP 634 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + E + I T + A +K P + + Sbjct: 635 LKIAKYLVEERVNIIGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAEN 694 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ Q + + + +++ + G +LI+++++ + Sbjct: 695 LGYPVLVRPSYVLGGRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDV 751 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D D + + E S +S VLP + + +E++ + +A+ G Sbjct: 752 DVVSDGKYVWIAGLMEQIEEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVG 811 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 ++ +++ +E N + T P ++ G + + Sbjct: 812 VANIQLAV--KDEEIYIIEANPRASRT----VPFVSKAIGIPVARIAAKI 855 >gi|218283802|ref|ZP_03489725.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989] gi|218215608|gb|EEC89146.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989] Length = 1069 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 36/297 (12%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C L + G++ I+ V V+ KP G Sbjct: 577 CVQTLREEGYEAIVINNNPETVSTDFSISDKLYFEPLTTEDVMHVIDLEKPLGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118 + L + + + + L+ D+ + ++ +P ++ Sbjct: 637 Q--TAINLADSLVEHGVKILGTSLHSIDLAEDRHEFEAMLHKLNIPQPQGETAVTVEESL 694 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177 + I P +++P + ++ D + + + +H +L+++Y+ G EL Sbjct: 695 VIANKIGYPVLVRPSYVLGGRAMEIVHNDDELRVYMATAVKEISHDAPILVDKYIVGKEL 754 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236 + D P + S +S V P +I + + + + + Sbjct: 755 EIDAIADGKNVYI----PGVMEHIERAGIHSGDSISVYPTQIINEKVKETIIDYGTRIGK 810 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ D + V+ LE+N + T P ++ G + ++ V Sbjct: 811 GFEFVGLYNIQFIVDKENN-VYVLEVNPRSSRT----VPFLSKITGVAMSQIATKCV 862 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V I+ + V+ +PD Sbjct: 30 GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTVDFAKRVIYKERPDAILGS 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + IL+ + + + A + D+ RS + VP + Sbjct: 90 LGGQTGLNLVVELHEDGILDEFGVEILGTDLHAINRAEDRELFRSLMQEINEPVPESMIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ P V++P G + + + Q LIEQ Sbjct: 150 HTVEEAVEFAKREGYPLVVRPAYTLGGTGGGFADDEAELREICDSGLKASPVHQCLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ ++ + + ++ + Sbjct: 210 IAG-YKEIEYEVMRDAKDNAIVVCNMENIDPVGVHTGDSTVVAPVQTLTDRENQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G +P S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKICGGCNVQLALNPDSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKISAK 324 Query: 292 M 292 + Sbjct: 325 L 325 >gi|307103805|gb|EFN52062.1| hypothetical protein CHLNCDRAFT_49120 [Chlorella variabilis] Length = 1040 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 32/276 (11%), Positives = 77/276 (27%), Gaps = 28/276 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + + V +L +PD Sbjct: 19 SGTQACKALKAEGYEVVLLNSNPATIMTDPGTADRTYVGPMTPELVEQILEKERPDAILP 78 Query: 57 VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + ILE + + + + + D+ + + + S + Sbjct: 79 TMGGQTALNLAKALSESGILEKYNVELIGAKLASINKAEDRELFANAMDKLNLKMAQSCI 138 Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + P +I+P G + + + Q+ IE Sbjct: 139 ATTMEECMKAAEEIGRLPLIIRPAFTLGGTGGGIAYNMDEFAEICKAGLNASMTSQVQIE 198 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I + + + + + + Sbjct: 199 QSLLGWKEFELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPVQTLTDKEYQRLRDA 258 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + G S +P + +E+N + Sbjct: 259 SVDIIREMGVECGGSNVQMAINPADGAMVIIEMNPR 294 Score = 44.5 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 10/174 (5%) Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + P +++P + ++ DQ I + + + +L+++Y+D Sbjct: 669 QIANSLGYPVMVRPSYVLGGRAMEIVYSDQDIHRYINTAVEVDPDRPVLVDKYLD-RADE 727 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 V A D + +S ++ + P I + ++ +A+ Sbjct: 728 LDVDALADKDGNVVICGIMQHIEQAGVHSGDSACSIPPQTISPECLAVIRDWTPKLAKAL 787 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289 G+ + V+ +E N + T P +A G+ + LL Sbjct: 788 KVVGLINIQYAV--QDNTVYIIEANPRASRT----VPFVAKAIGHPLAAYASLL 835 >gi|323359988|ref|YP_004226384.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum StLB037] gi|323276359|dbj|BAJ76504.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum StLB037] Length = 1095 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG L + G +V + D D + ++A KPD Sbjct: 29 SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYIEPITPEVIESIIAKEKPDAVLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + ILE ++ + A D+ K++V G V S++ Sbjct: 89 TLGGQTALNAAIQLHKRGILEKYDVELIGADFDAINRGEDRQIFKELVIEAGADVAASVI 148 Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P LG ++ + + +++L+E+ Sbjct: 149 CHSMDELLAGAEKLGYPLVVRPSFTMGGLGSGFAYDEEDLRRIGGAGLHDSPTNEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D T + + + + + + Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQRLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F DP + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IDIIRAVGVDTGGCNIQFAVDPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|302412655|ref|XP_003004160.1| urea amidolyase [Verticillium albo-atrum VaMs.102] gi|261356736|gb|EEY19164.1| urea amidolyase [Verticillium albo-atrum VaMs.102] Length = 1794 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 95/289 (32%), Gaps = 26/289 (8%) Query: 22 CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81 L G VS+ +D L+LA A +G E+ + +E + + Sbjct: 697 IIKTLRKLG--VSETYLDGQQILILAKESGAEAIIPGYGFLAENADFASQVEAAGLVWIG 754 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGS 137 K +++V S GVPV P ++D I P ++K GG Sbjct: 755 PTPDQMRKLGLKHLAREVAISAGVPVVPGSKSLLESVDQALAEAERIKYPVMLKSTAGGG 814 Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197 +G+ +S+ + +V+ + L E V + Sbjct: 815 GIGLSRCDDAKSLTEAYHSVQRLAEANFGDAGMFVEHFIENARHIEVQMLGDGEGNVTTA 874 Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256 L+ + P +P + ++ A A+ R + ++++D + + Sbjct: 875 GERDCSLQRRNQKVVEESPAVFVPPAVRDRMREAAKRLAAAVKYRNVGTIEYIYDVDTEE 934 Query: 257 VFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCL 299 ++LE+N + + G +L+ MV+ AS Sbjct: 935 FYFLEVNTR----------LQVEHPVTESVTGL---DLVEAMVKIASGN 970 >gi|229581956|ref|YP_002840355.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus Y.N.15.51] gi|259585689|sp|C3NH23|CARB_SULIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|228012672|gb|ACP48433.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus Y.N.15.51] Length = 1051 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVSVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ +V + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|300869330|ref|ZP_07113921.1| Urea carboxylase [Oscillatoria sp. PCC 6506] gi|300332707|emb|CBN59119.1| Urea carboxylase [Oscillatoria sp. PCC 6506] Length = 1207 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 16/181 (8%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P ++K GG +G+ V ++ + + + + +++ T + Sbjct: 150 IGYPVMLKSTAGGGGIGLQVCLSEEDLAEAFEKVQRLSQSNFKQSGVFLEKYIQTARHIE 209 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 + V ++ + PA D + +++ A +A+ + Sbjct: 210 VQIFGDGKGNVIALGERDCSVQRRNQKVIEETPAPGIRDQLREQLYAAAVKMGKAVNYQS 269 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298 +F++D +++ ++LE+N + G+T + +L+ WM++ AS Sbjct: 270 AGTVEFVYDVDTKQFYFLEVNTRLQVEHGVTET-----------VNRIDLVEWMIKLASG 318 Query: 299 L 299 Sbjct: 319 D 319 >gi|162319798|ref|YP_451768.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1080 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V +++ KPD Sbjct: 29 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 89 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + ++ + T + +Y+ ++ Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMG-VHTGDSITVAPAQTLTDKVYQRLRDA 267 Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + IG G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 268 SIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVA 323 Query: 290 LWM 292 + Sbjct: 324 AKL 326 Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873 >gi|84368336|dbj|BAE69494.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1090 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL D G++V + D + ++V +++ KPD Sbjct: 39 SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G A+ M + R V+ + + Sbjct: 99 TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 T++ I P +I+P G + + + + + + ++L+E+ Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + ++ + T + +Y+ ++ Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMG-VHTGDSITVAPAQTLTDKVYQRLRDA 277 Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + IG G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 278 SIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVA 333 Query: 290 LWM 292 + Sbjct: 334 AKL 336 Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D GF+ + D D V ++ KP G Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + T + A ++ + P + Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 717 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ + + + + ++ +L+++++D + V Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A D + + +S +S + P + E++R + + + G+ Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836 Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + F + V+ LE+N + T P ++ G ++ Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883 >gi|260555533|ref|ZP_05827754.1| urea carboxylase [Acinetobacter baumannii ATCC 19606] gi|260412075|gb|EEX05372.1| urea carboxylase [Acinetobacter baumannii ATCC 19606] Length = 1201 Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 78/254 (30%), Gaps = 22/254 (8%) Query: 57 VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110 +H +G +L E +L L + +P Sbjct: 77 AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P ++K GG +G+ ++ + + S + Sbjct: 137 LADEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229 Y++ + + V ++ + PA + ++ Q+ Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR 286 +A Q++ R +F+ D +++ ++LE+N + G + F Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVTEQVFS 305 Query: 287 -ELLLWMVEDASCL 299 +L+ WMV AS Sbjct: 306 VDLVEWMVTLASGD 319 >gi|313114931|ref|ZP_07800428.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310622753|gb|EFQ06211.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1083 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G + + D D V +L KPD Sbjct: 29 SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ L+ I + D+ + + Sbjct: 89 NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + I P +++P G + + + + Q+L+E+ Sbjct: 149 VETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLRLSPIHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + Y+ ++ Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +G G F P S +E+N P ++ S + GY ++ Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSYDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 10/250 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV ++A KPD G L I T + + A ++ Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158 ++ + + I P +++P +IV + + + + Sbjct: 686 RCRIPRAPGRTVFNLDEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L+++Y+ G E + D + + + + +S + Sbjct: 746 HVDMDHPVLLDKYILGTECEVDAICDGENFLIPGIMEQVERTG---VHSGDSICVYPAQH 802 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + + G+ + + KV+ +E+N + T P ++ Sbjct: 803 LTQAEIDTMVDYTGRFARELHVNGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856 Query: 279 AYAGYSFREL 288 G +L Sbjct: 857 KVTGVPMVDL 866 >gi|147678144|ref|YP_001212359.1| carbamoylphosphate synthase large subunit [Pelotomaculum thermopropionicum SI] gi|146274241|dbj|BAF59990.1| carbamoylphosphate synthase large subunit [Pelotomaculum thermopropionicum SI] Length = 809 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G +V I+ + V V+ +PD Sbjct: 30 GTQACRSLREEGLEVVLINSNPATIMTDSNMADRVYIEPLTPEFVTRVIRAERPDGLLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPSI 111 L G G + +Q +LE + + + A + D+ K+++ +P Sbjct: 90 LGGQVGLNLALQLAESGVLEEHGVQLLGTPLEAIKRAEDREMFKEMMQAIKEPIPESTIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +I+P G + + + + + Q+L+E+ Sbjct: 150 STLEEAEIFAERIGLPLIIRPAYTLGGTGGGIAYTMDDLRATVTRGLKHSIIGQVLLERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D + + + Y ++ + Sbjct: 210 VVGWKEIEYEVMRDGADNCITVCNMENIDPMGIHTGDSIVVAPSQTLSDRE-YHMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F DP S + + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNIQFALDPGSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 21/193 (10%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G++ I+ V +V ++ KPD G Sbjct: 584 ALREEGYEAIIINNNPETVSTDFDTADRLYFEPLVAENVLNIIDREKPDGVIVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + A ++ + P + Sbjct: 644 INLAKPLARAGVNILGTSVEDIDRAEDRERFDKLLIELGIPKPPGRTAFSVEEAYAIASE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + + + +L+++Y+ G EL + Sbjct: 704 IGFPVLVRPSYVLGGRAMEIVYNNKELFDYMSSAVKVSPEYPVLVDKYIYGKELEVDAIS 763 Query: 184 DASLDVTEIAVPK 196 D + + + Sbjct: 764 DGADILIPGIMEH 776 >gi|15897554|ref|NP_342159.1| carbamoyl phosphate synthase large subunit [Sulfolobus solfataricus P2] gi|284174875|ref|ZP_06388844.1| carbamoyl phosphate synthase large subunit [Sulfolobus solfataricus 98/2] gi|2500032|sp|Q59969|CARB_SULSO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|1304392|gb|AAA99059.1| carbamoylphosphate synthetase, large subunit [Sulfolobus solfataricus P2] gi|6015831|emb|CAB57658.1| carbamoylphosphate synthetase, large subunit [Sulfolobus solfataricus P2] gi|13813809|gb|AAK40949.1| Carbamoyl-phosphate synthase large subunit (carB) [Sulfolobus solfataricus P2] gi|261602317|gb|ACX91920.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus solfataricus 98/2] Length = 1051 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYNVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++L+E+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLLEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ AV + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|281411775|ref|YP_003345854.1| carbamoyl-phosphate synthase, large subunit [Thermotoga naphthophila RKU-10] gi|281372878|gb|ADA66440.1| carbamoyl-phosphate synthase, large subunit [Thermotoga naphthophila RKU-10] Length = 1099 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ AG++V + D + S + ++ +PD Sbjct: 29 SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V + IL+ + + + + + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +I+P G + ++ + + + + +LIE+ Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + + + ++ Y+ ++ Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+ AIG G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322 Score = 42.9 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ + KP G + E + I T + Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEEKVNIIGTSFESIE 657 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A +K P + + + P +++P + ++ Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + + +++ + G +LI+++++ + D D + + E Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP + + +E++ + +A+ G++ +++ +E N + Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANIQLAV--KDEEIYIIEANPR 832 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ G + + Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855 >gi|148269507|ref|YP_001243967.1| carbamoyl-phosphate synthase, large subunit [Thermotoga petrophila RKU-1] gi|167006453|sp|A5IJL8|CARB_THEP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|147735051|gb|ABQ46391.1| carbamoyl-phosphate synthase large subunit [Thermotoga petrophila RKU-1] Length = 1099 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ AG++V + D + S + ++ +PD Sbjct: 29 SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V + IL+ + + + + + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +I+P G + ++ + + + + +LIE+ Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + + + ++ Y+ ++ Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+ AIG G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322 Score = 42.9 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ + KP G + E + I T + Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEEKVNIIGTSFESIE 657 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A +K P + + + P +++P + ++ Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + + +++ + G +LI+++++ + D D + + E Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP + + +E++ + +A+ G++ +++ +E N + Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANIQLAV--KDEEIYIIEANPR 832 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ G + + Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855 >gi|15643323|ref|NP_228367.1| carbamoyl-phosphate synthase, large subunit [Thermotoga maritima MSB8] gi|22095541|sp|Q9WZ27|CARB_THEMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|4981072|gb|AAD35642.1|AE001730_10 carbamoyl-phosphate synthase, large subunit [Thermotoga maritima MSB8] Length = 1099 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ AG++V + D + S + ++ +PD Sbjct: 29 SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V + IL+ + + + + + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +I+P G + ++ + + + + +LIE+ Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + + + ++ Y+ ++ Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+ AIG G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322 Score = 42.2 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ + KP G + E + I T + Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEERVNIIGTSFESIE 657 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A +K P + + + P +++P + ++ Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + + +++ + G +LI+++++ + D D + + E Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774 Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S VLP + + +E++ + +A+ G++ +++ +E N + Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVGVANIQLAV--KDEEIYIIEANPR 832 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292 T P ++ G + + Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855 >gi|317502339|ref|ZP_07960508.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089946|ref|ZP_08338837.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA] gi|316896295|gb|EFV18397.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403084|gb|EGG82647.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA] Length = 1075 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV + ++ +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPEIADVTYIEPLNVDRIEQIIKKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K + G+ + S Sbjct: 89 NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKHTMDQLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 149 AYSVDEALAIAEKLGYPVVLRPAYTMGGAGGGLVYNVDELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I ++ + +Q Sbjct: 209 SILGWEELELEVVRDAEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQQRLQEK 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++ G + DP + + +EIN + T S + G+ L+ Sbjct: 268 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R +P + ++ Sbjct: 641 LNLAADLERNGVKILGTAPSVIDLAEDRDLFREMMDKLEIPMPESGMAVTVDDALEIAEK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ +S+ + + +LI++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+K + + + + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKNISEENVKTIKEYTRKIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ L + +V R Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869 >gi|153815196|ref|ZP_01967864.1| hypothetical protein RUMTOR_01428 [Ruminococcus torques ATCC 27756] gi|145847455|gb|EDK24373.1| hypothetical protein RUMTOR_01428 [Ruminococcus torques ATCC 27756] Length = 1086 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV + ++ +PD Sbjct: 40 SGTQACKALRNLGYEIVLVNSNPATIMTDPEIADVTYIEPLNVDRIEQIIKKERPDALLP 99 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K + G+ + S Sbjct: 100 NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKHTMDQLGIEMARSEV 159 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + Q+L+E+ Sbjct: 160 AYSVDEALAIAEKLGYPVVLRPAYTMGGAGGGLVYNVDELKTVCARGLQASLVGQVLVEE 219 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + + + ++ + I ++ + +Q Sbjct: 220 SILGWEELELEVVRDAEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQQRLQEK 278 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++ G + DP + + +EIN + T S + G+ L+ Sbjct: 279 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 333 Query: 291 WMV 293 M+ Sbjct: 334 AML 336 Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL+ GF+ + D D V + KP G Sbjct: 592 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 651 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R +P + ++ Sbjct: 652 LNLAADLERNGVKILGTAPSVIDLAEDRDLFREMMDKLEIPMPESGMAVTVDDALEIAEK 711 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ +S+ + + +LI++++ Sbjct: 712 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 768 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+K + + + + + +G Sbjct: 769 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKNISEENVKTIKEYTRKIAEEMHVKG 828 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ L + +V R Sbjct: 829 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 880 >gi|37521338|ref|NP_924715.1| carbamoyl phosphate synthase large subunit [Gloeobacter violaceus PCC 7421] gi|35212335|dbj|BAC89710.1| carbamoyl phosphate synthetase large chain [Gloeobacter violaceus PCC 7421] Length = 1083 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 96/303 (31%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ ++ + V ++ +PD Sbjct: 29 SGTQACKALREEGYEIVLVNSNPATIMTDPATADRTYIEPVTAEFVERIIERERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V+ +L+ + + + A + D+ KQ + G+ V S Sbjct: 89 TMGGQTALNVTVELAESGVLDRYGVELIGAKLPAIKKAEDRELFKQAMEKIGLAVPRSGF 148 Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + ++ + S P +++P G + + + + Q+L+E Sbjct: 149 AHTLEEARVVAEEIGSFPLILRPSFTLGGTGGGIAYNREEFERMIRVGLDASPTSQVLVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G + + D I +F + + + + Sbjct: 209 ESALGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 AIKVIREIGVETGGSNIQFAVHPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 41.4 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 83/290 (28%), Gaps = 28/290 (9%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63 AL + GF+ + D D S L L + N++ G Sbjct: 586 ALSEDGFETIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNIVEAEKPVGVIVQFGGQTP 645 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + I T + A ++ P + Sbjct: 646 LNLAVPLEKAGVPIWGTSPDSIDIAEDRERFEQLCQQLGIRQPANGMARSTADAVAVAGR 705 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P V++P + ++ D+ + + + +LI+++++ + V Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYTDEGLGRYMAHAVQVEPDRPILIDKFLE-DAVEVDVDA 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S ++ + + + ++ +A+ G+ Sbjct: 765 ICDRTGQVVIGGIMEHIEQAGIHSGDSACVLPTRTLDESVLAVIRDWTVKLARALKVVGL 824 Query: 244 SRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +V+ LE N + T P +A G ++ Sbjct: 825 MNIQYAVKAHREGAEVYVLEANPRASRT----VPFVAKATGVPLAKIAAR 870 >gi|308173088|ref|YP_003919793.1| arginine-specific carbamoyl-phosphate synthetase large subunit [Bacillus amyloliquefaciens DSM 7] gi|307605952|emb|CBI42323.1| arginine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus amyloliquefaciens DSM 7] gi|328554070|gb|AEB24562.1| carbamoyl phosphate synthase large subunit [Bacillus amyloliquefaciens TA208] gi|328911149|gb|AEB62745.1| arginine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus amyloliquefaciens LL3] Length = 1031 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + S+ ++ KPD Sbjct: 29 SGTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTPESIEAIIEKEKPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110 L G + V+ L+ + + + D+ + + VP Sbjct: 89 NLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMKELDQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + K ++ + Q+ + Q L+E+ Sbjct: 149 VDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALLASPISQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDKNHTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLAIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 92/294 (31%), Gaps = 33/294 (11%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G++ I+ + V H D A G Sbjct: 585 LQKLGYETIMINNNPETVSTDYEIADRLYFEPLTTEHILNVAEHENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L + D + + I Sbjct: 645 NAAEPLEKAGIPLLGTSFETLDALEDRDLFYKLLDDLDLKHAKGETAYTKEEAAEKASRI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I+++ + I L + + +LI+QY+ G E+ ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVESEAQISELLENEAGMPY--PILIDQYITGKEVEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + ++ +E++ A + +GI Sbjct: 763 GHEVFV----PTCTEHIERAGVHSGDSFAILPGPSVTPEMQRELKEAAEKIAVKLAFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + LE+N + T P ++ G L ++ AS Sbjct: 819 MNIQFVIDEK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867 >gi|284997965|ref|YP_003419732.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus L.D.8.5] gi|284445860|gb|ADB87362.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus L.D.8.5] Length = 1051 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ +V + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|227830471|ref|YP_002832251.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus L.S.2.15] gi|229579283|ref|YP_002837681.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus Y.G.57.14] gi|259585687|sp|C3MQE3|CARB_SULIL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|259585690|sp|C3NEM0|CARB_SULIY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|227456919|gb|ACP35606.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus L.S.2.15] gi|228009997|gb|ACP45759.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus Y.G.57.14] Length = 1051 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ +V + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|34557492|ref|NP_907307.1| urea amidolyase-related protein [Wolinella succinogenes DSM 1740] gi|34483209|emb|CAE10207.1| UREA AMIDOLYASE-RELATED PROTEIN [Wolinella succinogenes] Length = 1200 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + +Q + L + +++ T Sbjct: 147 AKRIGYPVMLKSTAGGGGIGMQLCSNEQELEESFLTVKRLSENHFANSGVFLEKYVSTAH 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239 + + V L+ + PA +E A +++ Sbjct: 207 HIEVQVFGDRKGKVTILGDRDCSLQRRNQKVVEETPAPHLSQECRESLYACAKKLMESVS 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 +F++DPL +K ++LE+N + G+T +G +L+ WMV Sbjct: 267 YLSAGTVEFIYDPLEQKFYFLEVNTRLQVEHGITE--------EVSGV---DLVEWMVHQ 315 Query: 296 A 296 A Sbjct: 316 A 316 >gi|313897862|ref|ZP_07831403.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2] gi|312957397|gb|EFR39024.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2] Length = 1072 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G +L + G++V I+ + ++ +PD Sbjct: 30 GSQACQSLREEGYEVVLINSNPATIMTDTAIADRVYIEPLTLEFASRIIYKERPDAILGS 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + +V+ ILE ++ + + A + D+ R+ + VP + Sbjct: 90 LGGQTGLNLVVELAESGILEEYDVEILGTDLAAINKAEDRELFRNLMYEINEPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G ++ + + + Q LIE+ Sbjct: 150 HTVEEAIAFANSIGYPVVVRPAYTLGGTGGGFADTEEELRIIADNGLKLSPVHQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + ++ ++ + Sbjct: 210 IAG-FKEIEYEVMRDNNDNAIVVCNMENIDPVGIHTGDSMVVAPVQTLSDREHQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 89/294 (30%), Gaps = 33/294 (11%) Query: 26 LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L + G++ I+ + V V+ +P G Sbjct: 581 LRERGYEAIVINNNPETVSTDFSISDKLYFEPLTIEDVMHVVDLEQPLGVIVQFGGQTAI 640 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + ++I T + A + P + + ++ + I Sbjct: 641 NLADKLVERGVKILGTSLKDIDRAEDRHAFEAMLHTLDIPQPQGETAVEVEEAVNIANRI 700 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMG 183 P +++P + ++ D + + + +H +L+++Y+ G EL + Sbjct: 701 GYPVLVRPSYVLGGRAMEIVHNDDDLRVYMATAVKEISHDAPILVDKYIVGKELEIDAIC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + P I + + + + G+ Sbjct: 761 DGEHVYIPGIMEHIERAGIHSG---DSISVYPPQTISDKVRDTIVDYSIRIGKGFHFIGL 817 Query: 244 SRSDFLFD-PLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ + P K V+ LE+N + T P ++ G + + V Sbjct: 818 FNIQFIVEAPKDGKEEMVYVLEVNPRSSRT----VPFLSKITGVAMSHIATRCV 867 >gi|229541904|ref|ZP_04430964.1| urea carboxylase [Bacillus coagulans 36D1] gi|229326324|gb|EEN91999.1| urea carboxylase [Bacillus coagulans 36D1] Length = 1200 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 55/319 (17%) Query: 19 GKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP--------DLAF------ 55 L G + + VD++ VL P DL Sbjct: 14 ATRIERTLSKMGIQSVAVYTKADQDSLHVDQADEAVLIGEGPAAESYLNADLIIKTAIET 73 Query: 56 --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 +H G E+ I + + K ++ + GVP+ P Sbjct: 74 GAEAIHPGYGFLSENSDFARACRKNGITFIGPEPEQMEVFALKHTARNMARKAGVPLLPG 133 Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162 I ++ I P ++K GG +G+ + + ++ + + Sbjct: 134 TDLITTLEDAVEQAAQIGYPVILKSTAGGGGIGMRICDDEAALRKSFKAVRHLASSNFKN 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 L + + + G+ +VT + K + LP Sbjct: 194 DGVYLEKYIAKARHVEVQIFGNRFGEVTALGERDCSLQRRNQKVIEESPAPNLPQH---- 249 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMA 278 + + A + R +FL+DP + F+LE+N + G+T Sbjct: 250 VRAAMLVSAKKLAATVNYRSAGTVEFLYDPDTLSFFFLEVNTRLQVEHGVTE-------- 301 Query: 279 AYAGYSFRELLLWMVEDAS 297 G +L+ WMV++A+ Sbjct: 302 EVLGI---DLVEWMVKEAA 317 >gi|254472985|ref|ZP_05086383.1| pyruvate carboxylase [Pseudovibrio sp. JE062] gi|211957706|gb|EEA92908.1| pyruvate carboxylase [Pseudovibrio sp. JE062] Length = 1148 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 14/234 (5%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 + V + D +G E I + +K+ ++++ Sbjct: 67 EIIRVAKEQRVDAIHPG-YGFLSESPEFAEACAENGIIFIGPSPETMRRLGNKVSARELA 125 Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GVPV P+ M+ I P ++K GG G+ VIK ++++ ++++ Sbjct: 126 IKAGVPVMPATDPLPDDMEEIKRLALEIGYPVMLKASWGGGGRGMRVIKDEETLEREVVE 185 Query: 157 SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 + + + L + + ++GD ++ + + Sbjct: 186 AKREARAAFGKDEVYLEKLVERARHVEVQILGDQHGNLVHLFERDCSIQ----RRHQKVV 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + +E+ + +G G +FL D + KV+++E+N + Sbjct: 242 ERAPAPYLDEEKRRELCEYGLKIGREVGYCGAGTVEFLMDADTGKVYFIEVNPR 295 >gi|78044442|ref|YP_360331.1| carbamoyl-phosphate synthase large subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996557|gb|ABB15456.1| carbamoyl-phosphate synthase, large subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 1064 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + + V+ KP Sbjct: 30 GTQACRALKEEGYEVVLVNSNPATIMTDANIADRVYIEPLTVEFLEKVIIQEKPQGIVAT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + + IL+ + + + A + D+ + + VP + Sbjct: 90 LGGQAGLNLTVELFERGILQRESVQVLGTPLEAIKKAEDRELFKETMLAIGEPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +I+P G + D+ + + Q+L+E+ Sbjct: 150 TNVEDGLSFARSIGYPVIIRPAYTLGGSGGGIAHNDEEFKEICQRGLKQSLIQQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G I V + ++ + + Y+ ++ + Sbjct: 210 VAGW-KEIEYEVLRDAMDNAIIVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F DP S K + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKIEGGCNVQFALDPKSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 33/278 (11%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L + G+K I D D V ++ H KP+ G Sbjct: 578 LREEGYKAVIINNNPETVSTDFDTSDRLYFDPLTFEDVKNIIDHEKPEGVVVQFGGQTAI 637 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + +++ + + +A K + P + + + I Sbjct: 638 NLAKPLAQAGIKLFGSSVEAIDTAEDRQKFDAFLNSLGLKRPAGKGVFAISEAVQTAKEI 697 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P V++P + ++ ++ + + ++ + +LI++Y++G+E+ + D Sbjct: 698 GYPVVVRPSYVLGGRAMEIVYNEEELKNYMKWATQISPEHPVLIDRYLEGLEIEVDALAD 757 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGI 243 P + S +S V P ++ ++ +G +G+ Sbjct: 758 GKEVFI----PGIMEHIERAGVHSGDSIAVYPTLHLDAEMIDKIYEYTCKIALGLGIKGL 813 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276 ++ +++ LE+N P ++ ++ P Sbjct: 814 LNIQYVV--YENELYVLEVNPRASRTIPFLSKITGVPM 849 >gi|23098535|ref|NP_692001.1| arginine specific carbamoyl-phosphate synthase large chain [Oceanobacillus iheyensis HTE831] gi|22776761|dbj|BAC13036.1| arginine specific carbamoyl-phosphate synthase large chain [Oceanobacillus iheyensis HTE831] Length = 1075 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 102/308 (33%), Gaps = 42/308 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 S A AL+ AG++ I+ + V V+ K D Sbjct: 578 SVHAV-QALQKAGYETIMINNNPETVSTDYSVADKLYFEPLALEDVLHVIEKEKVDGV-- 634 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVN 114 +L + LE IP + D+ + Q ++ G+P + Sbjct: 635 MLQFGGQTAINLANELEKEGIPLLGTKPKEIDQMEDREQFYQFLNQLGIPHIKGEIVHNQ 694 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--LIEQYV 172 + + + + P +I+P + + ++ + + + H LI+ Y+ Sbjct: 695 KEVISTVKDLGFPVLIRPSYVIGGQSMYICYNEKDLLSYVSKIQEDTHDRCWPLLIDDYL 754 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G+E V+ D V V + +S + P ++ + + + +A Sbjct: 755 PGMEYDVDVISDGENIVIPGIVEHIEKAG---VHSGDSIGVFPPRELKSEQQERMIEIAK 811 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AA---YAGY 283 + GI F+ + ++ LE+N P ++ V+ P + A GY Sbjct: 812 QIAGKLPIVGIMNIQFVIHHQT--IYVLEVNPRASRTVPVISKVTGVPMIEWAVYSQLGY 869 Query: 284 SFRELLLW 291 +++ Sbjct: 870 PLTDIVSK 877 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 41/308 (13%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL+D G +V ++ + ++ ++ KPD Sbjct: 30 GTQACLALKDEGIEVVLVNNNPATIMTDEQIADNVYLEPLNKETLVKIIEKEKPDGLIGT 89 Query: 58 LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ +E+ T + +K R + + + + Sbjct: 90 LGGQTGLNLSIELFEAGILEKYEVELLGTSVDSIQKGEDREKFRELMIEINEPISESKIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + L + + Q+L+E+ Sbjct: 150 TNVEEGLRFIDQIGFPIILRPAYTLGGEGGGFAHNEAEFEELLNRGLGLSPIHQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ + Sbjct: 210 IKGW-KEVEYEVMRDANDTCIIVCNMENMDPVGVHTGDSIVVAPSQTLTDHQYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA-Y 280 +A+ G F +P S + +E+N P ++ S +P A Sbjct: 269 VKVIRALNVVGGCNIQFALNPDSNEYCIIEVN--PRVSRSSALASKATGYPIASMAAKCA 326 Query: 281 AGYSFREL 288 G + EL Sbjct: 327 IGLNLDEL 334 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] gi|300076538|gb|ADJ65937.1| urea amidolyase protein [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P ++K GG +G+ V + D + + +++ Sbjct: 147 ASRVGYPVMLKSTAGGGGIGMRVCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + V ++ + PA D + + + A +A+ Sbjct: 207 HLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLEETPAPNLPDGMAEALCAAAIKLAKAVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D L+ + ++LE+N + G+T ++ G +L+ WM+E Sbjct: 267 YRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315 Query: 296 ASCL 299 A+ Sbjct: 316 AAGD 319 >gi|302876837|ref|YP_003845470.1| carbamoyl-phosphate synthase, large subunit [Clostridium cellulovorans 743B] gi|307687522|ref|ZP_07629968.1| carbamoyl-phosphate synthase, large subunit [Clostridium cellulovorans 743B] gi|302579694|gb|ADL53706.1| carbamoyl-phosphate synthase, large subunit [Clostridium cellulovorans 743B] Length = 1076 Score = 59.5 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 41/319 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + G +V ++ + + ++ +P Sbjct: 28 SGTQGCKALREEGIEVILLNSNPATIMTDFKVADRVYIEPMTLEACEEIIKKERPQGIIA 87 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + Q ILE + + + ++ D+ + K+++ P+ S Sbjct: 88 TLGGQTALNLACQLSESGILEKYNVKLLGTSVETIEMAEDREKFKKLMEDIKEPMAESEI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ I P +++P G + ++ + + + Q+L+E+ Sbjct: 148 VTTIEAALNFAKTIGYPVIVRPAYTLGGTGGGIADNEEQLKEIAHSGIALSPIGQILVEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G T I + + ++ + + + Y ++ Sbjct: 208 SLLG-YKEIEYEVMRDSVGTCITICNMENIDPVGVHTGDSIVVAPTQTLNDEQYHLLRTA 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279 + + G F P + +E+N P ++ S +P A Sbjct: 267 SLKIIDNLKIEGGCNVQFALSPYDNSYYVIEVN--PRVSRSSALASKVTGYPIAKVAAKI 324 Query: 280 YAGYSFRELLLWMVEDASC 298 GYS E++ + + +C Sbjct: 325 AIGYSLFEIINPITKKTAC 343 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 104/299 (34%), Gaps = 36/299 (12%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62 CA AL++ G + I D D S L L + N++ Sbjct: 575 CAMALKEMGIEAIMINNNPETVSTDFDTSDKLYFEPLTLESVLNIIEVEKPMGVIAQFGG 634 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120 + A L+ + + + ++ D+ + + G+ + Sbjct: 635 QTSLNLVAGLQHFGVNILGTSTESLDIAEDRSSFEAFLEKLGIERPMGKTAVNLEEARTA 694 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179 I P +I+P +++++ + + + ++ + I++Y++G E+ Sbjct: 695 IKEIGFPALIRPSYVIGGEAMMIVRNQEQFEHYMSTALRVVSNEEPILIDKYIEGKEVEI 754 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAI 238 +G + + V + S +S + P K ++ +++Q+ + + Sbjct: 755 DGIGAVTEKGYALKVIGIMEHIERAGIHSGDSMTIYPPKNLSEVVLEKIQKYSRAIADGL 814 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 G+ ++ +V+ +E+N + T P + G + +VE+A+ Sbjct: 815 KVIGMINIQYVV--KDEQVYVIEVNPRASRT----VPIFSKATGVN-------VVEEAT 860 >gi|332074887|gb|EGI85359.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA41301] Length = 1058 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|210623079|ref|ZP_03293566.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275] gi|210153882|gb|EEA84888.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275] Length = 450 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 15/234 (6%) Query: 41 SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100 ++ + L+ D G E+ + I + L DK ++++ + Sbjct: 67 NILYIAEKLECDAIHPGF-GFLSENPEFVRRCKEKNIIFIGPSEEQMVLMGDKSKARRTM 125 Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156 GVPV P + I P +IK GG G+ ++ + + + Sbjct: 126 QKLGVPVVPGSKAVLKDKEEAKKMAEEIGYPVMIKASAGGGGRGMRIVHQPEDLEKSFEI 185 Query: 157 -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211 S + +GD + + + + V GD + + + + Sbjct: 186 AKSEAISYFKNGDLYMEKFIQNPRHIEVQVFGDKFGNAIHLGERDCSMQ----RRNQKMI 241 Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + K + A A + G +F+ D +++E+N + Sbjct: 242 EESPSCYLNDEERKGLYESALKAVKGTNYEGAGTVEFIVDKDKN-FYFIEMNTR 294 >gi|237755850|ref|ZP_04584447.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691986|gb|EEP60997.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 499 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 98/314 (31%), Gaps = 48/314 (15%) Query: 19 GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54 A ++ G K I + L + + DLA Sbjct: 40 ATRIIRACKELGIKTVAIYSEADAKSIYVKKADEAYLIPGDPIQAYLNYFRIVDLAKQTK 99 Query: 55 FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 + +H G E+ I + AL DKM +K+ + GV + P Sbjct: 100 CDAIHPGYGFLSENPEFAEYCVKQGIIFIGPKPEHIALFGDKMAAKKKMRELGVSILPGS 159 Query: 112 LVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162 + I P ++K GG G+ +++ + + + Sbjct: 160 DEPISDLKKAKEIASEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGK 219 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222 GD + + + + +M D +V + + + + Sbjct: 220 GDVFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQ----RRHQKIVEIARSPSLDEE 275 Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 + KE+ R + A +G + ++L D + +++E+N + + EM G Sbjct: 276 VKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNTR--LQVEHTVTEM--VTG 330 Query: 283 YSFRELLLWMVEDA 296 +++ M+E A Sbjct: 331 I---DIVQKMIEIA 341 >gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053] gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053] Length = 566 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 64/224 (28%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50 + + GG S ERE+S + GK L+ + F+ + VD +L + Sbjct: 3 IGIFFGGPSREREISYAGGKTAFEYLDKSLFEPVPVFVDSFGRFILLQNELMYLSEIREF 62 Query: 51 ------------------------------------------PDLAFNVLHGNFGEDGLV 68 D AF +HG EDG + Sbjct: 63 YPAPGIQKDGFKTYVESFPELAAAPVPSEIGKQINPSEFKQYFDFAFLAMHGPDCEDGAI 122 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVV----------SSCGVPVCPSILVNRFTM 118 Q +LE +IPY+ G++ SA+ +DK+ ++ + Sbjct: 123 QGLLEWYKIPYSGPGLMGSAVGIDKILQNDMIALVNGQEKKSWTLKYSQWVPRDYPLLFQ 182 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKD--QSIPLDLLQSSSW 160 + + P V K GSS+G+ ++K D + + Q Sbjct: 183 VLKKHLGLPLVFKAPHQGSSIGVAIVKDDSLEEFIAAVNQCFFQ 226 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 5/141 (3%) Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219 DQ+L+E++V G E +CG + + + + + KY S P Sbjct: 297 DQVLVEEFVSGQEFSCGCIQFDDGSPLALPPSEVIKMVEVFDFNTKYKPGASRKRTPVGT 356 Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279 L+ +E+Q++ + +G R D P + + N PGM+P S + A Sbjct: 357 TLEKNREIQQMIAATFRQLGIDACVRIDGFLKP-DGTILLHDPNTIPGMSPTSFIFKQMA 415 Query: 280 YAGYSFRELLLWMVEDASCLR 300 G + + L ++V + R Sbjct: 416 EIGLTVTQALTYLVRQSLRER 436 >gi|221060811|ref|XP_002261975.1| carbamoyl phosphate synthetase [Plasmodium knowlesi strain H] gi|193811125|emb|CAQ41853.1| carbamoyl phosphate synthetase, putative [Plasmodium knowlesi strain H] Length = 2169 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 33/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAH--------- 48 G S E + S C + K I D D S L Sbjct: 1647 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1703 Query: 49 ---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 K G + + + I T + + + +K + Sbjct: 1704 YNFEKSHGVIIAFGGQTSNNLVFSLYKNSVNILGTSAKSVDCCENRNKFSNLCDSLKIDQ 1763 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P + + + P +++P S + V+ + + L++++ + + Sbjct: 1764 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 1823 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++I ++++ + + + A+ + + + I ++ ++ Sbjct: 1824 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1881 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++++ +++ G F+ ++ +E N + FP ++ +F Sbjct: 1882 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1935 Query: 286 RELLLWMV 293 +L ++ Sbjct: 1936 IDLATRIL 1943 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G V ++ + V ++ KPD Sbjct: 650 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 709 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110 G + +L+ + + + ++ ++ + + + S Sbjct: 710 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESIMITENRSMFAEKLREINEIIAPYGS 769 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + I P +++ L I ++ + + +++ I++ Sbjct: 770 AKNVEQAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELVKK-CKEIFLQTDNEIFIDK 828 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G IA+ + ++ + + Y + + + Sbjct: 829 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNHEYYKFREI 887 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A + G F +P + + +E+N + ++ S + GY Sbjct: 888 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 939 >gi|320528991|ref|ZP_08030083.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis F0399] gi|320138621|gb|EFW30511.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis F0399] Length = 1075 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + ++A KPD Sbjct: 30 GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLSEIIAKEKPDGLLAT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ +E+ T + A ++ + +P + Sbjct: 90 LGGQAGLNLAVQLAEKGILEQHGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++P G + + ++ + +++ +++ Q+LIE+ Sbjct: 150 EDVHSAVEFANKIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + Y+ ++ + Sbjct: 210 VAGWKEIEFEVIRDGRDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDYE-YQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + + D S + + +E+N P ++ S + GY ++ Sbjct: 269 LRIIRELGIEGGCNAQYALDTQSDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 30/294 (10%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL G + I D+ V ++ KPD G Sbjct: 582 ALRSMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVDKEKPDGIIVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + L + T + + ++ + P S+ + Sbjct: 642 INLAAALERAGLRVYGTSVDDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAVAGAKR 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +L+++Y+ G E+ + Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMQRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P +P + + A+ +G+ Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVKGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ +VF +E+N + T P ++ + + + AS Sbjct: 819 LNIQFVVAH--DEVFIIEVNPRSSRT----VPFLSKITNVNMVSVATQVAMGAS 866 >gi|153954992|ref|YP_001395757.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri DSM 555] gi|219855435|ref|YP_002472557.1| hypothetical protein CKR_2092 [Clostridium kluyveri NBRC 12016] gi|146347850|gb|EDK34386.1| CarB2 [Clostridium kluyveri DSM 555] gi|219569159|dbj|BAH07143.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1072 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A++ G + ++ + S+ ++ +PD Sbjct: 29 SGTQACEAIKKEGIETVLVNSNPATIMTDKNIAHKTYVEPLTVESLEAIIKRERPDGVLA 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G + ++ IL+ + + + D+ ++ + + Sbjct: 89 GFGGQTALNLAMELGKLGILKKYNVELLGIKTESIKNAEDRESFKNLMEEIEEPIALSTI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +S P +I+P G + + + +Q+L+EQ Sbjct: 149 ATDLEQCKSFLDKVSLPIIIRPAYTLGGTGGGIADNYEEYLEICKNGLEESPINQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + Y+ ++R Sbjct: 209 SLAGWKELEYEIMRDKKDNCMVVCNMENLDPVGIHTGDSIVVAPSQTLTDRE-YQMLRRS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + + G F +P + +E+N P ++ S + AGY ++ Sbjct: 268 SIKIIRKLKIEGGCNIQFALNPSGNEYMVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 31/278 (11%) Query: 25 ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I D+ V V+ K D G Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFDPLYIDDVMNVINEEKVDGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + + T + A +K R + P+ S+ + Sbjct: 640 LNLSKKLNDRGVNLLGTSFESIDLAEDREKFRILLKKLNINSPIGGSVTSLKEAYKLVSE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ + + L ++ + + +L+++Y+ G E+ + Sbjct: 700 IGYPVIVRPSYVIGGRAMKVVYNPEELERYLKEAVNLSKEHPVLVDKYILGREIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + +P + + ++ + + +G+ Sbjct: 760 DGQDLIIPGIMEHVERTG---VHSGDSIAIYPASDLPEKVCQRIEEYTVNIARELNVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276 + FD K++ +E+N P ++ V+ P Sbjct: 817 LNVQYAFD--GDKIYVIEVNPRASRTVPILSKVTDVPM 852 >gi|297617745|ref|YP_003702904.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus lipocalidus DSM 12680] gi|297145582|gb|ADI02339.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1068 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60 C AL AG K + D D V ++ P+ G Sbjct: 578 CVWALRQAGIKAIIVNNNPETVSTDFDTSDRLYFEPLVWEDVMNIIEEENPEGVIVQFGG 637 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + Q ++I T + A + D+ P S+ ++ Sbjct: 638 QTAINLAQQLQQAGVKILGTSFESIDRAENRDRFDELVESLGIPRPPGGSVTSIEGGLEV 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + + + + + +L+++Y+ G EL Sbjct: 698 AERIGYPVLVRPSYVLGGRAMEIVYNETEMVEYMRGAVKVSREFPILVDKYLGGKELEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + +I D +++ +A+ Sbjct: 758 AISDGQDVLIPGIMQHIERAG---VHSGDSIAVYPAHQISQDTKEKIVDYTTKLARALAV 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 +G+ F+ +++ LE+N + T P ++ G +L ++ Sbjct: 815 KGLINIQFV--EFEGELYVLEVNPRSSRT----VPYISKVTGIPMVKLATDII 861 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + V +L +PD Sbjct: 30 GTQACRALKEEGVQVVLVNSNPATIMTDSNIADRVYLEPLVPEVVARILRKEQPDGIIAN 89 Query: 58 LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G ILE IP + + A + D+ + VP + Sbjct: 90 LGGQVGLNMALALHKMGILEETGIPLLGTPLEAIQKAEDRELFKKTMQEIGEPVPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + + + + + Q+LIE+ Sbjct: 150 EDVEAAVEFAQRIGYPVIVRPAYTLGGTGGGTAYSEGELRVIATKGLKMSVIHQVLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + D + ++ + + + Y+ ++ + Sbjct: 210 VAGFKEIEFEVMRDANDNCITICSMENIDPMG-IHTGDSIVVAPALTLNDEEYQMLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G F +P S + + +E+N P ++ S + GY + Sbjct: 269 LKIIRALGIAGGCNIQFALNPFSSEYYVIEVN--PRVSRSS--ALASKATGYPIARVTTK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|187934720|ref|YP_001884325.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum B str. Eklund 17B] gi|226700925|sp|B2THH3|CARB_CLOBB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|187722873|gb|ACD24094.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum B str. Eklund 17B] Length = 1069 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G +V I+ + + V+ +PD Sbjct: 29 SGTQACEALKSEGIEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKVIVKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 + G G + V+ LE ++ + I + D+ + +++ V Sbjct: 89 GMGGQTGLNLAVELHDSGILEKYDVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D + I P +++P G + ++ + + L + Q+L+E+ Sbjct: 149 VTDLQSGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRIILESGLQLSTIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S + ++ + + Y+ ++ Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++G G F +P + + +EIN P ++ S + GY +L Sbjct: 268 SINIINSVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 88/281 (31%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C AL+ + + D+ V ++ P G Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++ T + + A +K P I ++ Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + +LI++Y+ G E+ Sbjct: 700 AERLGFPVLVRPSYVIGGQGMEITHDEEELIFYLTNAFVKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239 + D + P + S +S + P++ +I ++ AIG Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854 >gi|108804314|ref|YP_644251.1| carbamoyl-phosphate synthase large subunit [Rubrobacter xylanophilus DSM 9941] gi|122975987|sp|Q1AVY9|CARB_RUBXD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|108765557|gb|ABG04439.1| carbamoyl-phosphate synthase large subunit [Rubrobacter xylanophilus DSM 9941] Length = 1054 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + +V V+ +PD Sbjct: 29 SGTQACRALKEEGYRVILVNSNPATIMTDPEMADTTYIEPLRAETVAEVIRRERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V+ LE + + I + + D+ ++ + G+ V S Sbjct: 89 TLGGQTALNLAVELSEAGVLEEYGVQLLGASIPSIQKAEDRQLFREAMERIGLRVPESRT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G V + ++ + + +L+E+ Sbjct: 149 VRSVPEAEELAERIGFPLIIRPSFTLGGTGGSVAEDLDALRASVRDGLDASPVRSVLVER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + Sbjct: 209 SVAGWKEFELEVMRDLADNVVIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQSLRTAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + +E+N P ++ S + G+ ++ Sbjct: 269 IRIIREIGVSTGGSNIQFAVNPEGDDFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 >gi|160914208|ref|ZP_02076429.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991] gi|158433835|gb|EDP12124.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991] Length = 1065 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 33/288 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C + + G++ I+ + V V+ KP G Sbjct: 577 CVKTIREMGYEAIVINNNPETVSTDYSISDKLYFEPLTIEDVMHVIDLEKPLGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + ++I T + A + P + ++ Sbjct: 637 QTAINLADKLVARGVKILGTSLEAIDRAEDRHEFEQMLRKLDIPQPTGDTAYEVEKAIEI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179 + I+ P +++P + ++ D+ + + + +H +L+++YV G E+ Sbjct: 697 ANRITYPVLVRPSYVLGGRAMEIVHNDEDLRVYMATAVQEISHDAPILVDKYVIGKEMEV 756 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238 + D P + S +S V PA + + A + Sbjct: 757 DAICDGEHVFI----PGIMEHIERAGVHSGDSISVYPAPTASQKVKDTIVDYAIRIGKGF 812 Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA 281 G+ F+ D KV+ LE+N P ++ ++ P Sbjct: 813 HFVGLFNIQFIVD-KDEKVYVLEVNPRSSRTVPFLSKITGVPMSYVAT 859 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 88/297 (29%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G ++L + G++V I+ + ++ +PD Sbjct: 30 GTQACTSLREEGYEVILINSNPATIMTDSVIADRVYIEPLTLEFASRIIYKERPDAVLGS 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + +V+ +EI T + A DK R VP + Sbjct: 90 LGGQTGLNLVVELAESGILDECGVEILGTELDAIEKAEDRDKFRELMYELGEPVPESVIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + P V++P G + + + + Q LIEQ Sbjct: 150 HSVEEAVEFANTNGYPVVVRPAFTLGGTGGGFANNLEELEVICENGLKLSPVHQCLIEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + ++ A Sbjct: 210 IAG-YKEIEYEVMRDNADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLTDRECGMMRAAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKL 321 >gi|154496701|ref|ZP_02035397.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC 29799] gi|150273953|gb|EDN01053.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC 29799] Length = 1098 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNV 57 G AL++ G +V + D+ SV V+ +PD Sbjct: 30 GTQACRALKEEGVEVVLVNSNPATIMTDKDIADHVYIEPLNIASVEQVIEKERPDSILPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + + L+ + + + + D+ K + + G P S + Sbjct: 90 LGGQTGLNLAMNLHEQGILQKYGVRLLGTSPESIRKAEDRQGFKDAMEAIGQPCVTSDVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + S+ + + Q+LIE+ Sbjct: 150 ESVEDAVAFAGSIGYPVIVRPAYTLGGTGGGIAYDEPSLREIADRGIHLSRVGQVLIERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + + + ++ +++ + Sbjct: 210 ISGWKEIEFEVMRDSAGNVIQICSMENIDPVGVHTGDSIVVAPT-QTLANKEFQMLRKAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G +P S + +E+N P ++ S + GY ++ Sbjct: 269 LDIISALEIEGGCNVQLALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 89/288 (30%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A + G++ I D D V V+ KP A G Sbjct: 613 AFKRLGYETIIINNNPETVSTDFDVADKLYFEPLTPEDVEAVVELEKPWGAVVQFGGQTA 672 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T + + +A ++ ++ + + Sbjct: 673 IKLAQALTDMGVPILGTPADGVDAAEDRERFDEILEQCGIPRAKGRTVFTTEEALTAAKE 732 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D++I + + +L+++Y+ G EL + Sbjct: 733 LGYPVLVRPSYVLGGQGMEIAYSDKNIIDFMKIINMTVQEHPILVDKYLMGRELEVDGVF 792 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + R + +G G+ Sbjct: 793 DGEDILLPGIMEHVERSG---VHSGDSIAVYPPLHLEDKHKDMILRYTRDMAKHLGVIGL 849 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + ++ + +++ +E+N + T P ++ G +L Sbjct: 850 INAQYIL--YNDEIYVIEVNPRSSRT----IPYISKVTGVPIIDLATK 891 >gi|313200738|ref|YP_004039396.1| urea carboxylase [Methylovorus sp. MP688] gi|312440054|gb|ADQ84160.1| urea carboxylase [Methylovorus sp. MP688] Length = 1208 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P ++K GG +G+ +I ++ + + + Y++ Sbjct: 146 HAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGLYLEKYVEAA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + V ++ + PA + I +++ A AI Sbjct: 206 RHIEVQIFGDGAGHVVALGERDCSVQRRNQKVIEETPAPNISEAIRQQLAETAVRLASAI 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 G R +F++D S ++LE+N + G+T + +G +L+ WM+ Sbjct: 266 GYRSAGTVEFVYDNASGDFYFLEVNTRLQVEHGVTEL--------VSGV---DLVGWMIR 314 Query: 295 DAS 297 A+ Sbjct: 315 LAA 317 >gi|312897591|ref|ZP_07757008.1| carbamoyl-phosphate synthase, large subunit [Megasphaera micronuciformis F0359] gi|310621224|gb|EFQ04767.1| carbamoyl-phosphate synthase, large subunit [Megasphaera micronuciformis F0359] Length = 1065 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G +V I+ D + V+ +PD Sbjct: 28 GTQACRALKEEGLEVVLINSNPATIMTDEDIADRVYIEPITLDYVAEVIEKERPDGLLAT 87 Query: 58 LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G + +LE + + + A + D+ + + VP Sbjct: 88 LGGQVGLNMAIELAENGVLEKYGVKLLGTKLSAIEEAEDRELFKKAMKDINQPVPESDIF 147 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++D + I P +++P G + + + + + + Q+L+E+ Sbjct: 148 ENVQESVDFANSIGYPVIVRPAYTLGGTGGGIAHDEDELFMIATRGIKLSPIHQILVERS 207 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + ++ + + Y+ ++ + Sbjct: 208 VAGW-KEVEYEVMRDKADNCVIICNMENIDPVGVHTGDSIVVAPSQTLNDLQYQLLRTAS 266 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G + DP S + + +E+N P ++ S + GY ++ Sbjct: 267 VDIIRRLKIEGGCNVQYALDPNSNRYYVIEVN--PRVSRSS--ALASKATGYPIAKV 319 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 80/255 (31%), Gaps = 13/255 (5%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V V+ KP G + + + T + Sbjct: 604 DSLYFEPLTV---EDVMAVIDKEKPVGVICQFGGQTAINLAAPLAARGVNVLGTSVAGMD 660 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A +K P + M + P +++P + ++ Sbjct: 661 RAEDREKFDDLLTKLDIPRPAGRIATSDTEAMKVASELEFPLIVRPSYVLGGRAMEIVYT 720 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + L ++ + +LI++Y+ G EL + D + + + + + Sbjct: 721 ESELERYLREAVIASPDHPILIDEYMVGRELEVDAVSDGTDVFIPGIMEQVERAG---VH 777 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263 S + P ++ D+ ++ + +G F+ K++ +E+N Sbjct: 778 SGDSIAVYPPQQLDRDMIDQIVDYTTRITLELQVKGSVNIQFVLAR--GKLYIIEVNPRS 835 Query: 264 --VQPGMTPVSIFPE 276 P ++ V+ P Sbjct: 836 SRTVPFLSKVTRVPM 850 >gi|229918568|ref|YP_002887214.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp. AT1b] gi|259585680|sp|C4L5W3|CARB_EXISA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|229469997|gb|ACQ71769.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp. AT1b] Length = 1067 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 92/297 (30%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + D V ++ +PD Sbjct: 30 GTQACLALKEEGYEVILVNSNPATIMTDPTTADRVYIEPLEPEFVERIIRQERPDALLAT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + + + + A ++ R+ GVP + Sbjct: 90 LGGQTGLNLAFELDKRGVLRDCGVELLGTKLSAIVQAEDREQFRNLMFELGHGVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +I+P G + +S + + Q+L+E+ Sbjct: 150 HTLESAWGFAERIGYPIIIRPAYTLGGTGGGIAHDRESFEQIVESGLKASPVTQVLLEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G++ + S D I +F + D Y+ ++ ++ Sbjct: 210 IAGMKEVEFEVMRDSSDQAIIVCAMENFDPVGVHTGDSIVFAPTQTLSDRD-YQMLRSVS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+G G F DP S + +E+N P ++ S + GY +L Sbjct: 269 LDIIRALGIEGGCNIQFALDPDSFTYYVIEVN--PRVSRSS--ALASKATGYPIAKL 321 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 87/283 (30%), Gaps = 31/283 (10%) Query: 23 ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61 + DAG++ I+ V V+ + P G Sbjct: 578 IDTIRDAGYEAIIINNNPETVSTDFSISDRLYFEPLTTEDVLEVIENENPLGVIVQFGGQ 637 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + ++I T + A + P + + Sbjct: 638 TAINLAASLEANGVKILGTTLEDIDRAEDRKAFEATLSAERLAQPPGKTATNVEEAVACA 697 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 + + P +++P + ++ + + + + + +LI++Y+ GIE+ Sbjct: 698 NELGYPVLVRPSYVLGGRAMEIVYEQSELERYMRHAVIASKDRPVLIDRYLTGIEIEVDA 757 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D + + + +S + P ++ ++ ++V +A + Sbjct: 758 ICDGTDVYIPGIMEHIERAG---VHSGDSIAVYPPQRLSEELKQKVVDYTIKLAKAFRIK 814 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 G+ F++ ++ +E+N + T P ++ G Sbjct: 815 GLLNIQFVYA---DDLYVIEVNPRASRT----VPFISKVTGLP 850 >gi|27262158|gb|AAN87360.1| Carbamoyl-phosphate synthase large chain [Heliobacillus mobilis] Length = 1083 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + S+ ++ +PD Sbjct: 30 GTQACKALKEEGLEVVLVNSNPATIMTDANIADHVYIEPLNVPSLTRIIDQERPDGLLPT 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPSI 111 L G G + V LE ++ + I A + D+ KQ + + +P+ + Sbjct: 90 LGGQTGLNLAVALSQAGVLEKYQVRLLGTSIEAIKKAEDRELFKQTMQDLNEPIPLSDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + P +I+P G + + + + Q+L+EQ Sbjct: 150 SSLDQAVAFANKTGYPLIIRPAYTLGGTGGGIAHNETELLTICDMGLKKSMIGQVLLEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + + +F ++ + + Y+ ++ A Sbjct: 210 VAGWKEIEYEVMRDANNNCITICNMENFDP-VGIHTGDSIVVAPSQTLTDKEYQMLRTAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G F P + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRELKVEGGCNVQFALHPFKCEYIVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 40/294 (13%), Positives = 89/294 (30%), Gaps = 34/294 (11%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL D G + I D D V ++ KP+ G Sbjct: 580 ALRDCGVESIIINNNPETVSTDFDTADKLFFEPLALEDVLNIVEKEKPEGVVVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + +A K + + Sbjct: 640 INLAAGLSEHGVKILGTSLEGIDAAEDRKKFEALLKSLGIPQSEGKTATSAAEAKAIAEE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + V++ + + + + + +L+++Y+ G E+ + Sbjct: 700 LGFPVLVRPSYIIGGRAMEVVENVKDLESYMETAVRISPKHPILVDKYIRGKEVEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + P + + + +A+ G+ Sbjct: 760 DGTDTLIPGIFEHIERAG---VHSGDSMAVYPPQTLTTAERETIVDYTLRIAKALQVVGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 ++ D KV+ LE+N P ++ V+ P + G S EL Sbjct: 817 LNIQYVVDNQ-GKVYVLEVNPRASRTVPILSKVTGVPMIKVAVQIMLGKSLAEL 869 >gi|229824730|ref|ZP_04450799.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC 49176] gi|229791059|gb|EEP27173.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC 49176] Length = 1073 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 98/317 (30%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADKVYIEPLNVAVVKKIIKEEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + ++ L+ + + L + D+ ++ V + Sbjct: 90 LGGQAGLNLAMELEESGFLKENNVKLIGTTALTIKKAEDRLEFKNTMEKLKEPVAASTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P V++P G + + + S+ L + Q LIE+ Sbjct: 150 EDVEAAVEFAKEIGYPIVVRPAYTLGGSGGGIAEDETSLRLICENGLRLSRVGQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + ++ ++ A Sbjct: 210 IAGWKEIEYEVMRDGRGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEHQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + +P + + +E+N P ++ S + GY ++ Sbjct: 269 LNIIDELGITGGCNVQYALNPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A R Sbjct: 325 IALGYTLDEIKNAVTGR 341 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 95/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62 C A AG++ I D D + L L P+ NV+ Sbjct: 578 CVWAFAKAGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVRNVVELEKPYGAVVQFGG 637 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120 + L + + + + D+ +++ G+P + ++ Sbjct: 638 QTAIGLTKALMEMGVKILGTSAEDVDAAEDRELFDNILNETGIPRASGGTVFTAEEAVEV 697 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P G+ + D I + + +L+++Y+ G EL Sbjct: 698 ANRLGYPVLVRPSYVLGGAGMRIAISDSDIREYINIINRNVQEHPILVDKYLMGEELEVD 757 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + + I ++ K ++ +++ Sbjct: 758 AVCDGEDILIPGIMQHIERAGIHSG---DSISVYPSQNISEELIKRIEDYTRKLAKSLHV 814 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 G+ F+ +V+ +E+N + T P ++ G EL ++ Sbjct: 815 IGLVNIQFII--YENEVYVIEVNPRSSRT----VPYISKVTGIPVVELAAKVI 861 >gi|221059041|ref|XP_002260166.1| biotin carboxylase subunit of acetyl CoA carboxylase [Plasmodium knowlesi strain H] gi|193810239|emb|CAQ41433.1| biotin carboxylase subunit of acetyl CoA carboxylase, putative [Plasmodium knowlesi strain H] Length = 2921 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 14/199 (7%) Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + +I + I P +IK +GG GI ++ ++ I Q Sbjct: 569 IYNKSTIHSLDACIKECQRIGYPVMIKASQGGGGKGIRKVENEEEIKKAYTQVQMELPNS 628 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 + + + + + D+ S + P+ +P +I+ Sbjct: 629 PIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSVVPPNIF 685 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPE 276 +E+++ + + I RG ++L+D + F+LE+N P G+T ++ Sbjct: 686 REMEKASIRLTKMIKYRGAGTIEYLYDQEKQTYFFLELNPRLQVEHPVSEGITNTNLISI 745 Query: 277 MAA-YAGYSFREL--LLWM 292 G + + + + Sbjct: 746 QLQVAMGIPLQNIDDIRRL 764 >gi|88856235|ref|ZP_01130895.1| carbamoylphosphate synthase, large chain [marine actinobacterium PHSC20C1] gi|88814554|gb|EAR24416.1| carbamoylphosphate synthase, large chain [marine actinobacterium PHSC20C1] Length = 1104 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG L + G +V + D D + + ++A +PD Sbjct: 29 SGTQACRVLREEGIRVILVNSNPATIMTDPDFADATYIEPITWQVIESIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------SSCGVPVCPS 110 L G + ++ + Y I A+ +++K +Q+ V Sbjct: 89 TLGGQTALNAAIELDAHGILEKYNVELIGANLEAINKGEDRQIFKQLVLDCGADVAKSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 +D + P VI+P LG + + + + +L+E+ Sbjct: 149 ATTVAEAVDFAEDLGYPLVIRPSFTMGGLGSGFAYTREELVRMVTDGLHQSPTTSVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D T + + + + + Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQNLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F DP +V +E+N P ++ S + G+ ++ Sbjct: 269 IDIIRAVGVDTGGCNIQFAIDPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|322435919|ref|YP_004218131.1| urea carboxylase [Acidobacterium sp. MP5ACTX9] gi|321163646|gb|ADW69351.1| urea carboxylase [Acidobacterium sp. MP5ACTX9] Length = 1227 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 16/183 (8%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 + P ++K GG +G+ V + + + Y++ Sbjct: 146 QAETLRYPVMLKSSGGGGGIGMKVCHSAPELEEAYDSVLRLSKANFGDSGVYLEKYVARA 205 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238 + + V + PA K + A L +A+ Sbjct: 206 RHIEVQIFGDGQGNVIALGERDCSAQRRHQKVLEETPAPGLSAATRKHLYDSAVLLGKAV 265 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F++D + ++LE+N + G+T G +L+ WMV+ Sbjct: 266 DYANAGTVEFIYDEDTTDFYFLEVNTRLQVEHGVTE--------QVTGI---DLVEWMVQ 314 Query: 295 DAS 297 A+ Sbjct: 315 QAA 317 >gi|225011713|ref|ZP_03702151.1| carbamoyl-phosphate synthase, large subunit [Flavobacteria bacterium MS024-2A] gi|225004216|gb|EEG42188.1| carbamoyl-phosphate synthase, large subunit [Flavobacteria bacterium MS024-2A] Length = 949 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG +L + G + I D +S+ +L K D Sbjct: 29 SGSQALRSLREDGIETILINSNPATIMTDPTMADHVYLKPLNTKSIIEILKKHKVDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPS 110 + G + ++A + + I A ++ D+ + ++++ G+P+ + Sbjct: 89 TMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAINITEDREKFRELMLEIGIPMAPQAT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P VI+ G ++ K+Q L + + +++I++ Sbjct: 149 ANSFLKGKEIAQEFGFPLVIRASFTLGGDGASIVYKEQDFDELLTRGLEISPIHEVMIDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S D I + + + + Sbjct: 209 ALIGWKEYELELLRDSNDNVVIICSIENMDPMGIHTGDSITVAPSMTLSDKTYQRMRDMA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G F P ++ + +EIN P ++ S + GY ++ Sbjct: 269 IHMMRSIGDFAGGCNVQFAVSPDDKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 44.5 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 78/259 (30%), Gaps = 11/259 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + ++ H KP+ L G + ++I T L Sbjct: 622 DKLYFEPVFW---EHIFDIIQHEKPEGVIVQLGGQTALKLAEKLDRYGIKIIGTSFKSLD 678 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + + P ++ + P +++P G+ ++ Sbjct: 679 LAEDRGSFSTLLKDNDIPFPEFGVAQTADQAIELADGLDFPILVRPSYVLGGQGMKIVIN 738 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + ++ ++LL++ Y+DG + C + I + Sbjct: 739 KKELEAHVVDLLQKIPNNKLLLDHYLDG-AIECEADAICDGENVYIIGIMEHIEPCGIHS 797 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 N+T + + + +A A+ G+ + KV+ +E N + Sbjct: 798 GDSNATLPVFNIGEYVLQQIKDHTKKIAL-ALNTVGLINIQYAV--KDEKVYVIEANPRA 854 Query: 267 GMTPVSIFPEMAAYAGYSF 285 T P +A + Sbjct: 855 SRT----VPFIAKAYNEPY 869 >gi|303229566|ref|ZP_07316354.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a] gi|302515691|gb|EFL57645.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a] Length = 1148 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+ + + D +G E+ I + + + DK+ Sbjct: 64 LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVN 121 Query: 96 SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ +P+ P + + P +IK + GG G+ + + + + Sbjct: 122 ARTQAKLADIPMIPGSDGALRDFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLR 181 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ S + D + + V+ + ++GD +V + K Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP + K V A + +G +FL +++E+N + Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNPR 295 >gi|33519755|ref|NP_878587.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus Blochmannia floridanus] gi|33504100|emb|CAD83362.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus Blochmannia floridanus] Length = 450 Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 81/284 (28%), Gaps = 39/284 (13%) Query: 19 GKACASALEDAGFKVSQID--VDRSVGLVLAHLK----------------PDLAFNV--- 57 A ++ G K I +DR + VL + P + + Sbjct: 14 ALRILRACKELGIKTVAIHSTIDRDLKHVLLSDETICIGLPPIINSYLNIPSIISSAEIT 73 Query: 58 ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-------- 102 +H G E+ +E + L +K+ + V+ Sbjct: 74 GASGIHPGYGFLSENADFAEQVERSGFIFIGPSPETIRLMGNKISAISVMKKSGVKPIPG 133 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 I F + I+ P +IK GG G+ ++ + + + + Sbjct: 134 WNYENNKKINNIDFCNNHNININYPVIIKSAYGGGGHGMRIVTNKSDLKNAIQTTQIESK 193 Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221 Y++ + L + ++ PA I Sbjct: 194 KIFNNDTIYIEQYLTQSRHIEIQILSDGKGNAIYLTERDCSIQRRHQKIIEETPAWGITP 253 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 ++ + Q I RG+ +FL+ + F++E+N + Sbjct: 254 EMRTFIGECCVKVCQEINYRGVGTFEFLY--ENGNFFFIEMNTR 295 >gi|306829264|ref|ZP_07462454.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis ATCC 6249] gi|304428350|gb|EFM31440.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis ATCC 6249] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKELPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVTFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|319442282|ref|ZP_07991438.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium variabile DSM 44702] Length = 403 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 27/275 (9%) Query: 19 GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58 G+ AL+ G +V +D +D ++V ++ ++PD + Sbjct: 27 GREVTIALQRLGVEVHAVDRYTGAPAQRVADFQYTIDMTDPQAVRALVEQVRPDFVVPEI 86 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + L + T + Sbjct: 87 EALATDALAEVEDAGLATVVPTARATQLTMNREGIRTLADKELGLPNSRHVFASTYEEFE 146 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIE 176 D I P V+KP+ S G I+ + I + S ++++IEQ+V Sbjct: 147 DGVRQIGIPCVVKPVMSSSGKGQSYIRDSEEIAPAWEYAMSGGRVRSERVIIEQFVPFDY 206 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + T + PA++ + + +A Sbjct: 207 EITLLTIRSVDPATGEDATWFCEPIGHRQQHGDYVESWQPAQMSEEALGAARSVAARITG 266 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268 A+G RG+ + V++ E++ +P GM Sbjct: 267 ALGGRGVFGVELFI--KGNDVYFSEVSPRPHDTGM 299 >gi|312864214|ref|ZP_07724448.1| carbamoyl-phosphate synthase, large subunit [Streptococcus vestibularis F0396] gi|322517235|ref|ZP_08070114.1| carbamoyl-phosphate synthase, large subunit [Streptococcus vestibularis ATCC 49124] gi|311100215|gb|EFQ58424.1| carbamoyl-phosphate synthase, large subunit [Streptococcus vestibularis F0396] gi|322124141|gb|EFX95675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus vestibularis ATCC 49124] Length = 1059 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLKQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|304436900|ref|ZP_07396864.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370099|gb|EFM23760.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1075 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + ++A KPD Sbjct: 30 GSQACRALKEDGLEVVLVNSNPATIMTDTNIAGRVYIEPLTVEFLTEIIAKEKPDGLLAT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ + + Y + A ++ + +P + Sbjct: 90 LGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESLIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + +++ +++ Q+LIE+ Sbjct: 150 EDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + Y+ ++ + Sbjct: 210 VAGWKEIEFEVIRDGNDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + + D S + + +E+N P ++ S + GY ++ Sbjct: 269 LRIIRELGIEGGCNAQYALDTKSDQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 26/262 (9%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + I D+ V + KPD G Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIADKEKPDGIIVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + L + T + + ++ + P S+ + Sbjct: 642 INLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAAR 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +L+++Y+ G E+ + Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + + + A+ +G+ Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVKGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265 F+ +VF +E+N + Sbjct: 819 LNIQFVVAH--DEVFIIEVNPR 838 >gi|238926952|ref|ZP_04658712.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC 43531] gi|238885186|gb|EEQ48824.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC 43531] Length = 1075 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + + ++A KPD Sbjct: 30 GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVEFLTEIIAKEKPDGLLAT 89 Query: 58 LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + VQ + + Y + A ++ + +P + Sbjct: 90 LGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESLIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + I P +++P G + + ++ + +++ +++ Q+LIE+ Sbjct: 150 EDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + Y+ ++ + Sbjct: 210 VAGWKEIEFEVIRDGNDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G + + D S + + +E+N P ++ S + GY ++ Sbjct: 269 LRIIRELGIEGGCNAQYALDTKSDQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 26/262 (9%) Query: 25 ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + G + I D+ V + KPD G Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIADKEKPDGIIVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + L + T + + ++ + P S+ + Sbjct: 642 INLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAAR 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + ++ +L+++Y+ G E+ + Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMGRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + + + A+ +G+ Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVKGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265 F+ +VF +E+N + Sbjct: 819 LNIQFVVAH--DEVFIIEVNPR 838 >gi|228478416|ref|ZP_04063024.1| carbamoyl-phosphate synthase, large subunit [Streptococcus salivarius SK126] gi|228250095|gb|EEK09365.1| carbamoyl-phosphate synthase, large subunit [Streptococcus salivarius SK126] Length = 1059 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + ++I T L A D P + +++ Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + I + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFASEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|210076310|ref|XP_504800.2| YALI0E35156p [Yarrowia lipolytica] gi|199427005|emb|CAG80408.2| YALI0E35156p [Yarrowia lipolytica] Length = 1820 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 9/143 (6%) Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVDGIELTCG 180 P +IK GG +G+ + K + + + + Sbjct: 770 YPLMIKSTAGGGGIGLQKVDKPEDLKRAFDTVKHQGKSFFGDDGVFMERFVEKARHVEVQ 829 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 ++GD + I K PA + + + + + + Sbjct: 830 ILGDGKGNAIAIGERDCSLQRRNQKVIEETPAPNFPA----ETRTRMMNASEMLAKNLNY 885 Query: 241 RGISRSDFLFDPLSRKVFWLEIN 263 RG +F+FD + ++LE+N Sbjct: 886 RGAGTVEFIFDEKRNEFYFLEVN 908 >gi|154685558|ref|YP_001420719.1| carbamoyl phosphate synthase large subunit [Bacillus amyloliquefaciens FZB42] gi|154351409|gb|ABS73488.1| CarB [Bacillus amyloliquefaciens FZB42] Length = 1031 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ S+ ++ KPD Sbjct: 29 SGTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTTDSIEAIIEKEKPDGLLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110 L G + V+ L+ + + + D+ + + VP Sbjct: 89 NLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMKELDQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + K ++ + Q+ + Q L+E+ Sbjct: 149 VDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALLASPISQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSNHTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEEYQMLRSA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLAIISALDVVGGCNIQFAMDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 90/294 (30%), Gaps = 33/294 (11%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G++ I+ + V H D A G Sbjct: 585 LQKLGYETIMINNNPETVSTDYEIADRLYFEPLTTEHILNVAEHENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L + D + + I Sbjct: 645 NAAEPLEKAGIPLLGTSFETLDALEDRDLFYQLLDDLDLKHAKGETAYSKEEATEKASRI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I++ + + L + + +LI+QY+ G EL ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSEAQMSELLENEAGMPY--PILIDQYITGKELEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + D+ + ++ A + +GI Sbjct: 763 GHEVFV----PTYTEHIERAGVHSGDSFAILPGPSVTPDMQRNIKEAAEKIAVKLAFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + LE+N + T P ++ G L ++ AS Sbjct: 819 MNIQFVIDDK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867 >gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7] gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7] Length = 1351 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%) Query: 22 CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60 C AL++ G+ V ++ + V ++ KP G Sbjct: 577 CVWALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTNEDVMNIIRVEKPVGVVVAFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 ++I T + +A ++ P +++ +D Sbjct: 637 QTAIKLTKYLSENGVKILGTPPDSIDAAEDRERFDELLEDLHIKRPEGFTVMTCEEALDV 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P +I+ + I + + +LI++Y+ GIEL Sbjct: 697 ADKIGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEID 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + + + + +V + ++ Sbjct: 757 AICDGEEILIPGIMEHIERTGIHSG---DSIAVYPAWNVSDRLIDKVVDCSKRLALSLKT 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ +L +++ +E+N + T P ++ G +L Sbjct: 814 KGLVNIQYLI--YDDELYVIEVNPRSSRT----IPYISKVTGVPMVDLATK 858 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 96/303 (31%), Gaps = 34/303 (11%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL+ G +V I+ + +V V+ +PD + Sbjct: 30 GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRVIIKERPDSLLST 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113 L G G +Q L+ + + + D+ K + S G P PS +V Sbjct: 90 LGGQTGLTLSMQLAKEGFLDEYNVKLLGANPETIDKAEDRQLFKDTMESIGQPCIPSKVV 149 Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N I P +I+P G ++ ++ + + Q+L+E Sbjct: 150 NTVEDAVAFSKEEGIGFPLIIRPAFTLGGTGGGIVNNEEELIEITRNGLYLSPITQVLVE 209 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + S +F ++ + + Y+ ++ Sbjct: 210 KCIAGWKEIEFEVMRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRS 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 A + G F +P + + +E+N P ++ S + GY ++ Sbjct: 269 AALKIIDTLKVEGGCNCQFALNPETFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVA 324 Query: 290 LWM 292 + Sbjct: 325 AQI 327 >gi|303232062|ref|ZP_07318765.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6] gi|302513168|gb|EFL55207.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6] Length = 1148 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 16/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+ + + D +G E+ + I + + + DK+ Sbjct: 64 LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEVFARRCGEEGIIFIGPHVEHLNMFGDKVN 121 Query: 96 SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ +P+ P + + P +IK + GG G+ + + + + Sbjct: 122 ARTQAKLADIPMIPGSDGALRDFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLR 181 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ S + D + + V+ + ++GD +V + K Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP + K V A + +G +FL +++E+N + Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNPR 295 >gi|15615458|ref|NP_243761.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans C-125] gi|22095533|sp|Q9K8V7|CARY_BACHD RecName: Full=Carbamoyl-phosphate synthase arginine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|10175517|dbj|BAB06614.1| arginine specific carbamoyl-phosphate synthase large chain [Bacillus halodurans C-125] Length = 1047 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL + G +V ++ + SV ++ +PD Sbjct: 30 GAQACLALREEGIQVILVNNNPATVMTDEACADVVYFEPLTVASVKNIIERERPDGLLAT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G + +E+ T + + R VP + Sbjct: 90 LGGQTGLNLAMKLEEAGILEAYNVELLGTPMESIKKGEDREAFRQLMHELHEPVPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 +D + + P +++P G + + ++++ + + Q LIE+ Sbjct: 150 HSVAEAVDFANTVGYPIIVRPAYTLGGAGGGIAESEEALIRIVKGGLELSPIQQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDSNDTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDQEYQMLRSAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + +G G F DP S++ + +E+N P ++ S + GY + Sbjct: 269 LKIIRTLGIVGGCNIQFALDPDSKQYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324 Query: 292 M 292 + Sbjct: 325 L 325 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 32/281 (11%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 A +L F+ I+ + V V+ D L G Sbjct: 583 AKSLRARNFEAIIINNNPETVSTDYETADRLYFEPLAVEDVLNVIEVENVDHVIVQLGGQ 642 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + I T ++ ++ + + + Sbjct: 643 TAIGLTKGLEEAGVSILGTTQDVIDQLEDRERFYEFMRSVEVPHIPGKTAETKEELLKAA 702 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P +++P G+ + + + + + + +L++ Y G+E V Sbjct: 703 QSIGYPILLRPSYVIGGQGMFIASNQEEL-AAFCEDKNHSVTFPILVDAYYPGVEFEVDV 761 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D S + +S + P + ++ + + + Sbjct: 762 LTDGSDIFIPGMFEHVEKAG---VHSGDSMAVTPPPTLEAKWKQQAINYTRQIAKGMAYK 818 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 G+ F+ +++ +E+N P + + P + Sbjct: 819 GLFNIQFVL--YDEELYVIEVNPRASRTVPIFSKATSLPLI 857 >gi|296271764|ref|YP_003654395.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter nitrofigilis DSM 7299] gi|296095939|gb|ADG91889.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter nitrofigilis DSM 7299] Length = 389 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 72/279 (25%), Gaps = 30/279 (10%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK + G + +D + V+ KPD + Sbjct: 23 GKEVIIEAQRLGIETIAVDSYNNAPAQLVANKAYTINMKNKNEILDVIRREKPDYILPEV 82 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + IP + + + + Sbjct: 83 EAINIDALFTAEKEGFHVIPNAEAVN-KTMNRKNIREFAAEELELPTSKYKFVKSFDELK 141 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 ++ I P VIKP+ S G + K + + + LI + + Sbjct: 142 NAAEYIGFPCVIKPVMSSSGHGQSIAKSAKELEKSWEIAKEARGDASELIVEEFIKFDYE 201 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 ++ + T P + P K+ K+ + +A + Sbjct: 202 ITLLTVRNERQTIFCAPIGHI-----QKDGDYIFSWQPMKMSDKAIKKSEEIAKKITDGL 256 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277 G RGI + +V++ E++ +P + + Sbjct: 257 GGRGIFGVELFV--KGDEVYFSEVSPRP--HDTGMVTMI 291 >gi|321314854|ref|YP_004207141.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5] gi|320021128|gb|ADV96114.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5] Length = 1030 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + S+ ++ +PD Sbjct: 29 SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + +++ T + +K RS VP Sbjct: 89 NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + Q+ + +Q L+E+ Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ GF+ I+ + V D A G Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L D+ I Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I++ + L S + +LI+QYV G E+ ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + + ++ A + + +GI Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + + LE+N + T P ++ G L ++ AS Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866 >gi|253580995|ref|ZP_04858256.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39B_FAA] gi|251847658|gb|EES75627.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39BFAA] Length = 331 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 17/291 (5%) Query: 21 ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--VQAILELLEIP 78 ++L+ KV+ + + + + D+ F + GN + + V I E I Sbjct: 36 QIYNSLQRISPKVTHYNDLPTFIDNIYKHRNDIVFTIYGGNSSRNRMALVPGICESYNIK 95 Query: 79 YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135 Y + + + DK SK++ G+ V S+ +N + HL+ P VIKPL Sbjct: 96 YVGADVYNRIICQDKNISKELAKKAGILVPDSVTINSLDNLNTFNLHLLKYPVVIKPLME 155 Query: 136 GSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMG--------DA 185 GSS+GI Q+ + + +++EQ++ G E+ ++G + Sbjct: 156 GSSIGITKNSLCQNANNIKEKIEKLYKTYNQPIMVEQFIPGKEIVTCLVGSSKNIRLAEM 215 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 E + Y + N + I +I + + G R Sbjct: 216 VEVCVEQDNTYFNDKLYTGEIKHQNKVNTYHRIITSEIDGSIMNTIKQVFTSFGKMDYMR 275 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 D + K + +E ++ F ++ Y ++ L+ ++ + Sbjct: 276 IDGKL--YNNKFYMIEFTPDASLSAHCSFKDIYEYQNKTYDNLMEDIINSS 324 >gi|255767255|ref|NP_389006.3| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. 168] gi|254763438|sp|P18185|CARY_BACSU RecName: Full=Carbamoyl-phosphate synthase arginine-specific large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|225184882|emb|CAB12965.3| arginine-specific carbamoyl-phosphate synthetase (large subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1030 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + S+ ++ +PD Sbjct: 29 SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + +++ T + +K RS VP Sbjct: 89 NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + Q+ + +Q L+E+ Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ GF+ I+ + V D A G Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L D+ I Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I++ + L S + +LI+QYV G E+ ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + + ++ A + + +GI Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + + LE+N + T P ++ G L ++ AS Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866 >gi|221308965|ref|ZP_03590812.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. 168] gi|221313289|ref|ZP_03595094.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318213|ref|ZP_03599507.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. JH642] gi|221322487|ref|ZP_03603781.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis subsp. subtilis str. SMY] Length = 1030 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + S+ ++ +PD Sbjct: 29 SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + +++ T + +K RS VP Sbjct: 89 NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + Q+ + +Q L+E+ Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ GF+ I+ + V D A G Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L D+ I Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I++ + L S + +LI+QYV G E+ ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + + ++ A + + +GI Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + + LE+N + T P ++ G L ++ AS Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866 >gi|408119|emb|CAA81548.1| carbamoylphosphate synthetase subunit B [Bacillus subtilis subsp. subtilis str. 168] Length = 1027 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + S+ ++ +PD Sbjct: 29 SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + +++ T + +K RS VP Sbjct: 89 NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + ++ + Q+ + +Q L+E+ Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + T I V + ++ + + + Y+ ++ Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + A+ G F DP S++ + +E+N P ++ S + GY ++ Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 86/294 (29%), Gaps = 37/294 (12%) Query: 26 LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ GF+ I+ + V D A G Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVREQENIDFAIVQFGGQTAI 644 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + + T L D+ I Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +I+P +G+I++ + L S + +LI+QYV G E+ ++ D Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243 P + S +S +LP + + ++ A + + +GI Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 F+ D + + LE+N + T P ++ G ++ AS Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPRA---TRLLAGAS 863 >gi|160944594|ref|ZP_02091821.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii M21/2] gi|158443778|gb|EDP20782.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii M21/2] gi|295104397|emb|CBL01941.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium prausnitzii SL3/3] Length = 1083 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G + + D D V +L KPD Sbjct: 29 SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ L+ I + D+ + + Sbjct: 89 NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + +D I P +++P G + + + + + Q+L+E+ Sbjct: 149 VETLQDALDCADRIGYPVIVRPAFTMGGTGGGICETREKLIEIGTNGLRLSPIHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + Y+ ++ Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +G G F P S +E+N P ++ S + GY ++ Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 84/285 (29%), Gaps = 31/285 (10%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G + + D D SV ++A KPD G Sbjct: 591 LKKNGCEAILVNNNPETVSTDFDTGDRLYFDPLNPESVDNIIATEKPDACVVQFGGQTAI 650 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 L I T + + A ++ + ++ + + I Sbjct: 651 KLAKHMDEIGLPILGTPADAIDEAEDRERFDELLERCNIPRAPGRTVFNLDEALAAAEEI 710 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 P +++P +IV I + + + + +L+++Y+ G E + Sbjct: 711 GLPVLMRPSYVLGGQNMIVAYNKADIIEYMGVITEHVDMDHPVLLDKYIMGTECEVDAIC 770 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + +S + + D + + + G+ Sbjct: 771 DGENFLIPGIMEQVERTG---VHSGDSICVYPAQHLTQDEIDTMVDYTGRFARELHVTGL 827 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + +V+ +E+N + T P ++ G ++ Sbjct: 828 VNVQYAVSH--GRVYVIEVNPRSSRT----VPYISKVTGVPMVDM 866 >gi|323691569|ref|ZP_08105833.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum WAL-14673] gi|323504362|gb|EGB20160.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum WAL-14673] Length = 1087 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 32/293 (10%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C +L+ AG++V ++ + V ++ KP A G Sbjct: 565 CVWSLKRAGYEVVIVNNNPETVSTDFNVADRLYFEPLTPEDVMDIIRVEKPAGAVVAFGG 624 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + + T + + A + S + P ++ + + Sbjct: 625 QTAIRLTKCLVENGVPVLGTPAESIDMAEDRGRFNSLLKKLNMKQPSGDTVYTEDEAIAT 684 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + + P +++P +I+ +D I + + +LI++Y+ G EL Sbjct: 685 ANRLGYPVLVRPSYVLGGQNMIIAYQDADIHEYMKIILEHKIENAILIDKYLMGTELEVD 744 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + D + P + S +S V PA + + + + ++G Sbjct: 745 AICDGEDVLI----PGIMEHIERAGVHSGDSIAVYPAFMLTESQKDRIVDYSIRLALSLG 800 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +G+ ++ + ++ +E+N + T P ++ G +L + Sbjct: 801 TKGLINIQYVLHEDT--IYIIEVNPRSSRT----VPYISKVTGVLMVDLATRI 847 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + V ++ KPD + Sbjct: 20 GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRIIDKEKPDSILST 79 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G ++ LE + + + D+ K + G PV PS + Sbjct: 80 LGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTMEEIGEPVIPSEVV 139 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M I P +++P G + K + + + Q+L+E+ Sbjct: 140 TTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIRLSPIHQILVEKC 199 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S+ +F ++ + + Y+ ++ A Sbjct: 200 IAGWKEIEFEVMRDSVGNEITVCSMENFDP-VGIHTGDSIVIAPAVTLADKEYQMLRSAA 258 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 QA+G G F +P S + +E+N P ++ S + GY + Sbjct: 259 LNIIQAMGIEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARVATK 314 Query: 292 M 292 + Sbjct: 315 I 315 >gi|238019470|ref|ZP_04599896.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748] gi|237864169|gb|EEP65459.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748] Length = 1148 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 16/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+ + + D +G E+ I + + + DK+ Sbjct: 64 LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVN 121 Query: 96 SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ +P+ P + + + P +IK + GG G+ + + + + Sbjct: 122 ARAQAKLADIPMIPGSDGALRDFEQLEEFANTHGFPLMIKAVNGGGGRGMREVHRKEDLR 181 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ S + D + + V+ + ++GD +V + K Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP + K V A + +G +FL +++E+N + Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295 >gi|159045179|ref|YP_001533973.1| carbamoyl phosphate synthase large subunit [Dinoroseobacter shibae DFL 12] gi|157912939|gb|ABV94372.1| carbamoyl-phosphate synthase large chain [Dinoroseobacter shibae DFL 12] Length = 1105 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++ +PD Sbjct: 29 SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + +L + + A ++ D+ ++ + G+ + + Sbjct: 89 TMGGQTGLNTSLALEEMGVLAKYGVEMIGAKREAIEMAEDRKLFREAMDRLGIENPRATI 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +I+P G V + +Q+LI++ Sbjct: 149 ATTMDECMAALDDIGLPAIIRPAFTLGGTGGGVAYNRDDYEHFCKSGLDASPVNQILIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNGS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S + +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 48/316 (15%), Positives = 106/316 (33%), Gaps = 51/316 (16%) Query: 1 MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42 + +L GG + G+ AL +AG++ + D D S Sbjct: 572 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDYDTSD 624 Query: 43 GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88 L L + +L HG + LE IP + A Sbjct: 625 RLYFEPLTFEHVMEILRAEQENGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 684 Query: 89 LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKK 146 L+ D+ R + +V+ G+ + + + I P VI+P + +++ Sbjct: 685 LAEDRERFQALVNDLGLKQPHNAIASTDAEAFAAAGDIGFPLVIRPSYVLGGRAMEIVRD 744 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205 + + ++ + +L++ Y+ G +EL + D + + Sbjct: 745 MGQLERYIAEAVVVSGDSPVLLDSYLAGAVELDVDALCDGENVHVAGIMQHIEEAG---V 801 Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 +S ++ + P + D+ ++ +A+ +G+ F +++ +E+N + Sbjct: 802 HSGDSACSLPPYSLSDDVLARIRVQTEALARALRVKGLMNVQFAI--KDDEIYLIEVNPR 859 Query: 266 PGMTPVSIFPEMAAYA 281 T P +A Sbjct: 860 ASRT----VPFVAKAT 871 >gi|330898476|gb|EGH29895.1| Urea amidolyase-related protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 698 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 24/188 (12%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175 H I P ++K GG +G+ V + + + + +++ Sbjct: 147 AHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 L V GD +V + V K LP + ++ A Sbjct: 207 HLEVQVFGDCQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCI----AAVKLA 262 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ R +F+FD ++ ++LE+N + G+T ++ G +L+ W Sbjct: 263 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311 Query: 292 MVEDASCL 299 MV+ A+ Sbjct: 312 MVQLAAGD 319 >gi|303261595|ref|ZP_07347542.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS292] gi|303267153|ref|ZP_07353021.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS457] gi|303268446|ref|ZP_07354241.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS458] gi|302637175|gb|EFL67663.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS292] gi|302642052|gb|EFL72404.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS458] gi|302643314|gb|EFL73593.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS457] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|295677603|ref|YP_003606127.1| urea carboxylase [Burkholderia sp. CCGE1002] gi|295437446|gb|ADG16616.1| urea carboxylase [Burkholderia sp. CCGE1002] Length = 1199 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ V + + +++ Sbjct: 147 AQTIGYPVMLKSTAGGGGIGMRVCWNADELGAHFDAVRRLGENNFSDAGVFLEKYIERAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + ++ + PA D + + A +A+ Sbjct: 207 HLEVQVFGDGKGDALALGVRDCSVQRRNQKVLEETPAPCLPDGVQAALCEAAVRLAKAVD 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++D + + ++LE+N + G+T ++ G +L+ WM+E Sbjct: 267 YRSAGTVEFVYDSAAERFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|172064806|ref|YP_001815518.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6] gi|171997048|gb|ACB67965.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6] Length = 1173 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 15/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+D + V K D +G E+ + I + +K+ Sbjct: 69 LDID-DILRVARQAKVDAIHPG-YGFLSENPEFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126 Query: 96 SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ + GVPV P+ + P ++K GG G+ V++ Q + Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDFDACKVLAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 186 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 L + + + + + + + + V+GD V + + Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTVQ----RR 242 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + + + A +A+G +FL D + + +++E+N + Sbjct: 243 NQKVVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 301 >gi|168489101|ref|ZP_02713300.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae SP195] gi|183572511|gb|EDT93039.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae SP195] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|168484509|ref|ZP_02709461.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|172042246|gb|EDT50292.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|332201739|gb|EGJ15809.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA47368] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|148994086|ref|ZP_01823426.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP9-BS68] gi|147927439|gb|EDK78468.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP9-BS68] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP+S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPISFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|149012332|ref|ZP_01833401.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP19-BS75] gi|168493195|ref|ZP_02717338.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC3059-06] gi|182684209|ref|YP_001835956.1| carbamoyl-phosphate synthase large subunit [Streptococcus pneumoniae CGSP14] gi|221231963|ref|YP_002511115.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae ATCC 700669] gi|237649974|ref|ZP_04524226.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae CCRI 1974] gi|237821120|ref|ZP_04596965.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae CCRI 1974M2] gi|303254479|ref|ZP_07340584.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS455] gi|303258912|ref|ZP_07344891.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP-BS293] gi|303264265|ref|ZP_07350185.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS397] gi|226700939|sp|B2IQ67|CARB_STRPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813605|sp|B8ZJT9|CARB_STRPJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|147763658|gb|EDK70593.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP19-BS75] gi|182629543|gb|ACB90491.1| carbamoyl-phosphate synthase large subunit [Streptococcus pneumoniae CGSP14] gi|183576639|gb|EDT97167.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC3059-06] gi|220674423|emb|CAR68975.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae ATCC 700669] gi|302598565|gb|EFL65606.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS455] gi|302639855|gb|EFL70311.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP-BS293] gi|302646077|gb|EFL76304.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae BS397] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|15903196|ref|NP_358746.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae R6] gi|60389779|sp|Q8CWR0|CARB_STRR6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|15458783|gb|AAK99956.1| Carbamoylphosphate synthase (ammonia), heavy subunit [Streptococcus pneumoniae R6] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACFSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|15901135|ref|NP_345739.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae TIGR4] gi|111658502|ref|ZP_01409168.1| hypothetical protein SpneT_02000329 [Streptococcus pneumoniae TIGR4] gi|116516501|ref|YP_816600.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae D39] gi|148998914|ref|ZP_01826349.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP11-BS70] gi|225860894|ref|YP_002742403.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298230795|ref|ZP_06964476.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254285|ref|ZP_06977871.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502728|ref|YP_003724668.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae TCH8431/19A] gi|307067923|ref|YP_003876889.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae AP200] gi|22095521|sp|Q97QE4|CARB_STRPN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|122278514|sp|Q04K48|CARB_STRP2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|254813664|sp|C1CR31|CARB_STRZT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|14972759|gb|AAK75379.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae TIGR4] gi|116077077|gb|ABJ54797.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae D39] gi|147755224|gb|EDK62276.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP11-BS70] gi|225726462|gb|ACO22313.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238323|gb|ADI69454.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae TCH8431/19A] gi|306409460|gb|ADM84887.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae AP200] gi|327389510|gb|EGE87855.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA04375] gi|332073614|gb|EGI84093.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA17570] gi|332200720|gb|EGJ14792.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae GA41317] Length = 1058 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|210635500|ref|ZP_03298581.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279] gi|210158355|gb|EEA89326.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279] Length = 420 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 31/294 (10%) Query: 16 LSSG--KACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLA----FNVLHGNFGEDGLV 68 L+S K+ SA D F+V ID + L L +L L G Sbjct: 44 LASADIKSVRSAFCD--FRVISGIDQPEVLLPELERLGDELIAQGKIPFLVGCGDHYARQ 101 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----- 123 + + ++ L L D + ++ C P + Sbjct: 102 VSEHKQQIEERWYTPYLDFELLDDITQKERFYQICEEIGIPYPKTVFLDCGDKTAQVDDG 161 Query: 124 -ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 + P + KP + +I+ + + Q ++ L++++++ G Sbjct: 162 GFTYPVIAKPSNSAAWHYAEFPGQKKVYLIRSREELEALYRQLQDTSYDKLLIVQEFIPG 221 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + ++ P + + PA I + +V A Sbjct: 222 DDTQIRILSTYVDAA---CDPVFMVGGRVVLEDHSPTAIGNPAVIVSEQLDQVSDDALRF 278 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + +G RG++ D FD + EIN +PG S+F A G +F ++ Sbjct: 279 MRHVGYRGMANFDVKFDERDGTYKFFEINTRPG--RSSMFVHQA---GVNFAQV 327 >gi|326387387|ref|ZP_08208996.1| carbamoyl phosphate synthase large subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208043|gb|EGD58851.1| carbamoyl phosphate synthase large subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 1104 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + V ++ +PD Sbjct: 29 SGTQAIKALKEEGYRIVLVNSNPATIMTDPEMADATYVEPITPEIVAKIIEKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L+ + + A + D+ + + + G+ S + Sbjct: 89 TMGGQTALNTALALFRDGTLDKFGVTMIGANAEAIDKAEDRQKFRDAMDKIGLESARSGV 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + ++LIE+ Sbjct: 149 AHTVEEALAVLEHTGLPSIIRPSFTLGGTGGGIAYNKDEFIRIVRGGLEASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 10/173 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +I+P + ++ + + + + +LI+QY D +E Sbjct: 738 AARIGYPVLIRPSYVLGGRAMEIVDSQAQLDDYIATAVKVSGESPVLIDQYLRDAVECDV 797 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + V + + ++ + P +P +I E++R A L + + Sbjct: 798 DALSDGTDVVIAGVLQHIEEAGIHSG---DSACTLPPYSLPPEIIAEMERQAVLLAKGLN 854 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 RG+ F V+ +E+N + T P +A G + + Sbjct: 855 VRGLMNIQFAV--KDGNVYLIEVNPRASRT----VPFVAKAIGQPIAKYAARI 901 >gi|325523057|gb|EGD01470.1| pyruvate carboxylase [Burkholderia sp. TJI49] Length = 1172 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 15/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+D + V + D +G E+ + I + +K+ Sbjct: 69 LDID-DILRVARQARVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126 Query: 96 SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ + GVPV P+ + P ++K GG G+ V++ Q + Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDLDACKALAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 186 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 L + + + + + + + + V+GD V + K Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDMHGTVVHLHERDCTVQRRNQKV 246 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 L + + A +A+G +FL D + + +++E+N + Sbjct: 247 VERAPAPYLDRDGRHALCE----AALRLMRAVGYTHAGTVEFLMDADTNQFYFIEVNPR 301 >gi|302336069|ref|YP_003801276.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084] gi|301319909|gb|ADK68396.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084] Length = 422 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 16/173 (9%) Query: 124 ISPPYVIKPLKGGSSLGIIVIK--------KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 S P V KP + + + + ++ L++++ + G Sbjct: 164 FSYPLVAKPSNSAAYHYAEIPDKKKVFFVQDRSELEGIFRSLQASSYDKSLIVQELIPGE 223 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + S+ + P + + PA I + ++V A Sbjct: 224 DSQ---ERILSIYTDANSDPVFMVGGRVVLQDHAPTAIGNPAVIIPETNRKVLEDACRFM 280 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + +G G++ D +D + EIN +PG S+FP +A G +F ++ Sbjct: 281 RRVGYHGMANFDVKYDARDDSFKFFEINTRPG--RSSLFPYLA---GVNFAKV 328 >gi|325105839|ref|YP_004275493.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM 12145] gi|324974687|gb|ADY53671.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM 12145] Length = 937 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A +L++ G +VS I+ + S+ +L K D Sbjct: 29 SGSQAALSLKEEGIEVSIINSNPATIMTDNVIADHVYLLPLTVDSIEQILQERKIDAVLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G ++ + I + I A + ++ +Q++ GV V PS Sbjct: 89 TMGGQTALNLAKEADERGIWTKYGVRIIGVDIAAIEKTENREEFRQLMVDIGVGVAPSKI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P VI+P G + + L + + + ++L+EQ Sbjct: 149 ANSFLEGKEAAQEIGFPLVIRPSYTLGGSGGGFVHSKEDFDAALTRGLTASPTHEVLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I +F + + + + Sbjct: 209 AVLGWKEFELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRTYQEMRNQA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + + +EIN P ++ S + GY ++ Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPANDDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 82/259 (31%), Gaps = 11/259 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ L G + ++I T + Sbjct: 610 DKLYFEPIFW---EHVREIIELEKPEGVIVQLGGQTALKMAEKLHERGIKIIGTSFDNMD 666 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + + P + + + P +++P G+ ++ Sbjct: 667 IAEDRGRFSDLLRDLNIPYPRYGVAESAEEALKVANEVGYPVLVRPSYVLGGQGMSIVIN 726 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D+ + +++ G+++LI+ ++D + I + Sbjct: 727 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEEAESDSIFDGEDIHIIGLMEHIEP-AGIH 784 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S +S + P + ++ +++ +A+ RG+ F + V+ +E N + Sbjct: 785 SGDSSAVLPPYTLSANVISKMEEYTEKLARALDIRGLMNIQFAI--KNEDVYVIEANPRA 842 Query: 267 GMTPVSIFPEMAAYAGYSF 285 T P +A + Sbjct: 843 SRT----VPFIAKAYDVPY 857 >gi|300855697|ref|YP_003780681.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii DSM 13528] gi|300435812|gb|ADK15579.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii DSM 13528] Length = 1068 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A++ G + ++ + S+ ++ KPD Sbjct: 29 SGTQACEAIKKEGIQTVLVNSNPATIMTDKNIADKTYIEPLTVESLEAIIGREKPDGVLA 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 G + ++ + + + + D+ ++ + V Sbjct: 89 GFGGQTALNLAMELNEIGVFKKYNVELLGIKTESIKNAEDRESFKNLMNEIDEPIAVSEI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +S P +I+P G + + + +Q+L+EQ Sbjct: 149 ATNLEECKKFLNKVSLPIIIRPAYTLGGTGGGIASTYEEYMEICENGLEESPINQILLEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + Y+ ++R Sbjct: 209 SLAGWKELEYEIMRDKKDNCMVVCNMENLDPVGIHTGDSIVVAPSQTLNDRE-YQMLRRS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A + + G F DP S + +E+N P ++ S + AGY ++ Sbjct: 268 AIKIIRTLKIEGGCNIQFALDPNSNRYMVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 95/285 (33%), Gaps = 30/285 (10%) Query: 25 ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63 A++ AG++ I D+ V V+ K D G Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFEPLYIDDVMNVINEEKVDGVIVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + + T + A +K R PV S+ + Sbjct: 640 LNLSKKLNDRGVNLLGTSFESIDLAEDREKFRVLLKELDINSPVGGSVTSLEEADNLVAE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ + + L + + + +L+++Y+ G E+ + Sbjct: 700 IGYPVIVRPSYVIGGRAMKVVYNYEELCKYLKDAVNLSKEHPVLVDKYIVGKEIEVDAIS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + +S + + +P ++ K+++ + + +G+ Sbjct: 760 DGEDLIIPGIMEHIEKTG---VHSGDSIAVYPASDLPENVLKKIEDYTVKIAKKLNVKGL 816 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + FD KV+ +E+N + T P ++ E+ Sbjct: 817 LNVQYAFD--GDKVYVIEVNPRASRT----VPILSKVTNIPMVEI 855 >gi|222099085|ref|YP_002533653.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana DSM 4359] gi|254813665|sp|B9KB91|CARB_THENN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|221571475|gb|ACM22287.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana DSM 4359] Length = 1099 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL+ AG++V + D + S + ++ +PD Sbjct: 29 SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEEIIKKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + V+ IL+ + + + + + D+ K+ + G+ V S Sbjct: 89 TLGGQTALNLAVELAESGILDRYGVQLIGAKLESIKKAEDRELFKKTMEEAGLEVLRSRL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + +++ P +I+P G V ++ + + + + +LIE+ Sbjct: 149 VNNLTDALETAREFGYPVIIRPSFTLGGTGGGVAFNEEELREIVTKGLIESPVHTVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + + + + ++ Y+ ++ Sbjct: 209 SVIGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPSQTLTDVE-YQRMRDA 267 Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 A+ AIG G S F DP + ++ +E+N P ++ S + GY ++ Sbjct: 268 AYKVIDAIGIETGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGYPIAKI 322 Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 93/290 (32%), Gaps = 31/290 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++ + D D V ++ + KP G Sbjct: 575 AFQEEGYEAIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLEIVRNEKPKGVVVAFGGQTP 634 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + E + I T + A +K P + + Sbjct: 635 LRIARHLVEEGVNIIGTSFESIEIAEDREKFAKLLKRIGLRCPPFGTASSVEEALKVAED 694 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + ++ + + + +++ + G +LI+++++ + Sbjct: 695 LGYPVLVRPSYVLGGRAMAIVDTPEELERYVREAAIVSPGYPILIDKFLED---AIELDV 751 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D D + + E S +S VLP + + +E+++ +A+ G Sbjct: 752 DVVSDGKYVWIAGLMEQIEEAGVHSGDSACVLPPVSLSEKLVEEIEKTVHRLVKALKIVG 811 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 I+ +++ +E N + T P ++ G ++ + Sbjct: 812 IANIQMAV--KDEEIYIIEANPRASRT----VPFVSKAIGIPVAKIAAKI 855 >gi|197303253|ref|ZP_03168294.1| hypothetical protein RUMLAC_01976 [Ruminococcus lactaris ATCC 29176] gi|197297679|gb|EDY32238.1| hypothetical protein RUMLAC_01976 [Ruminococcus lactaris ATCC 29176] Length = 1067 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLIKKEKPDSVLPT 89 Query: 58 LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111 L G G + ++ L E G + + + R + + + + + Sbjct: 90 LGGQAGLNLAMELEEAGFLKENGVRLIGTTSETIKKAEDRLEFKATMEKIGEPVAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + L + Q+L+E+ Sbjct: 150 ENVEDGLAFANEIGYPVVLRPAYTLGGSGGGIAHDPHQLVEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + P + + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNITGGCNVQYALHPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYNLDEIQNAITKK 341 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 31/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KPD A G Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + A + P ++ + + Sbjct: 641 IKLTEALMKMGVPILGTSAENVDKAEDRELFDEILEECQIPRPTGGTVFTAEEAKEVANR 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D I + + +L+++Y+ G E+ + Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ D ++ +++ G Sbjct: 761 DGDDILI----PGIMEHIERAGIHSGDSISVYPAQSLTDGAKAKIAEYTRRLAKSLHVIG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ G L ++ Sbjct: 817 MINIQFIVCGEED-VYVIEVNPRSSRT----VPYISKVTGIPIVPLATQVI 862 >gi|307700764|ref|ZP_07637789.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris FB024-16] gi|307613759|gb|EFN93003.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris FB024-16] Length = 1105 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG L G KV + D + ++A +PD Sbjct: 29 SGTQACRVLRAEGIKVVLVNSNPATIMTDPEVADRTYIEPITTEVLEAIIAAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G + ILE + + A D+ K+VV C V Sbjct: 89 TLGGQTALNAAIQLHEAGILERYGVELIGANAAAINAGEDREEFKRVVERCGAEVARSWI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + + P V++P LG + + S + ++L+E+ Sbjct: 149 AHSLDDCFEAANQLGYPLVVRPSFTMGGLGSGIAYNAVDLERIAGAGLSDSLNTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + ++ Sbjct: 209 AIIGWKEYELELMRDQADNVVVVCSIENIDPVGVHTGDSVTVAPALTLTDRELQNLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPETGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 >gi|227875412|ref|ZP_03993553.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|269977334|ref|ZP_06184307.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris 28-1] gi|306818725|ref|ZP_07452447.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris ATCC 35239] gi|227843966|gb|EEJ54134.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|269934637|gb|EEZ91198.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris 28-1] gi|304648411|gb|EFM45714.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris ATCC 35239] Length = 1105 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56 SG L G KV + D + ++A +PD Sbjct: 29 SGTQACRVLRAEGIKVVLVNSNPATIMTDPEVADRTYIEPITTEVLEAIIAAERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110 L G + ILE + + A D+ K+VV C V Sbjct: 89 TLGGQTALNAAIQLHEAGILERYGVELIGANAAAINAGEDREEFKRVVERCGAEVARSWI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + + P V++P LG + + S + ++L+E+ Sbjct: 149 AHSLDDCFEAANQLGYPLVVRPSFTMGGLGSGIAYNAVDLERIAGAGLSDSLNTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D + + + + ++ Sbjct: 209 AIIGWKEYELELMRDQADNVVVVCSIENIDPVGVHTGDSVTVAPALTLTDRELQNLRDIG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F P + +V +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPETGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 RL 326 >gi|238619933|ref|YP_002914759.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus M.16.4] gi|259585686|sp|C4KHM7|CARB_SULIK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|238381003|gb|ACR42091.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus M.16.4] Length = 1051 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ AV + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|227827761|ref|YP_002829541.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus M.14.25] gi|229585032|ref|YP_002843534.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus M.16.27] gi|259585685|sp|C3N664|CARB_SULIA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|259585688|sp|C3MW21|CARB_SULIM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|227459557|gb|ACP38243.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus M.14.25] gi|228020082|gb|ACP55489.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus M.16.27] Length = 1051 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++ + ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ AV + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|184155678|ref|YP_001844018.1| carbamoyl phosphate synthase large subunit [Lactobacillus fermentum IFO 3956] gi|226700931|sp|B2GD06|CARB_LACF3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|183227022|dbj|BAG27538.1| carbamoylphosphate synthase large subunit [Lactobacillus fermentum IFO 3956] Length = 1059 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60 C AL+ G++ I+ D SV L L NV G Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L +A + + P+ + + +D+ Sbjct: 637 QTAINLASGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + L Q++ +L++ Y++G E Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + + +++ A+ C Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + + LE+N + T P ++ G +L ++ Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++ ++ + + + +L PD+ Sbjct: 29 SGTQACLALKEEGYETVLVNSNPATIMTDKGIADHVYIEPLTVAALTRILRQEAPDVLLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +++P G + + + + Q LIE+ Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ G DP S +E+N P ++ S + GY +L Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|148555411|ref|YP_001262993.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1] gi|148500601|gb|ABQ68855.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1] Length = 344 Score = 59.1 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 8/250 (3%) Query: 52 DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 D F +L+ G + L+ + E IPY + + LS DK +K+V + G+P P Sbjct: 74 DFVFPLLNRGGFLNSEMLLPLLCERRGIPYLGASPILRGLSDDKHLAKRVAVARGLPTAP 133 Query: 110 SILVNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG---D 164 L R L P V+KP +S GI + + + + H + Sbjct: 134 WALFRRGAPIDLSLCPPAARHVVKPNASSASWGISAAHDLEDVRAAVARLHKEGHDVIVE 193 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223 + ++ +T +Y K + ++ + D + Sbjct: 194 PFIPGHDIEVSVITLDGEPFILPVQIVEQDDPGYLRTYLEKRNLIDDQAYAIRPLDDDRL 253 Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283 E R A + R +F + + + ++E+N+ + AA G+ Sbjct: 254 RIEATRQAIEMMKEFLPFDYGRFEFRLNAATGALSFMEVNLNCNLWSRKTIAMAAAQIGW 313 Query: 284 SFRELLLWMV 293 S EL+ ++ Sbjct: 314 SHAELIETIL 323 >gi|182676800|ref|YP_001830908.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636647|gb|ACB97419.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 525 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 7/212 (3%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114 +G E+ IL I + + DK+ +K+ S G+P P + Sbjct: 82 YGFLSENAHFAEILAAHNIAFIGPKPEHIRIMGDKIEAKRTAISLGIPCVPGSSGALNHA 141 Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174 +D I P +IK GG G+ V + +SS Y++ Sbjct: 142 EEALDIAEGIGFPVLIKAASGGGGRGMKVAHSRDEFASAVATASSEAKAAFGDGSVYLEK 201 Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234 + L L+ P+ + + +E Sbjct: 202 YLENPRHIEIQVLGDGRGNAVHLGERDCSLQRRHQKVWEESPSPVLDETQREEICEICAV 261 Query: 235 -HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +G G+ +FL+ K +++E+N + Sbjct: 262 AMRKLGYLGVGTIEFLY--KDGKFYFIEMNTR 291 >gi|260663070|ref|ZP_05863963.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus fermentum 28-3-CHN] gi|260552691|gb|EEX25691.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus fermentum 28-3-CHN] Length = 1059 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60 C AL+ G++ I+ D SV L L NV G Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L +A + + P+ + + +D+ Sbjct: 637 QTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + L Q++ +L++ Y++G E Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + + +++ A+ C Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + + LE+N + T P ++ G +L ++ Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG AL++ G++ ++ D+ + +L PD Sbjct: 29 SGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRILRQEAPDALLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +++P G + + + + Q LIE+ Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ G DP S +E+N P ++ S + GY +L Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|227515719|ref|ZP_03945768.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus fermentum ATCC 14931] gi|227085919|gb|EEI21231.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus fermentum ATCC 14931] Length = 1059 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 22 CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60 C AL+ G++ I+ D SV L L NV G Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T L +A + + P+ + + +D+ Sbjct: 637 QTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P +++P + ++ + L Q++ +L++ Y++G E Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 + D + + + +S + P + + +++ A+ C Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 GI F+ + + LE+N + T P ++ G +L ++ Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG AL++ G++ ++ D+ + +L PD Sbjct: 29 SGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRILRQEAPDALLP 88 Query: 57 VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + +E+ T + A +K + VP + Sbjct: 89 TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P +++P G + + + + Q LIE+ Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELTEIAKNGLELSPATQCLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + Y+ ++ Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A A+ G DP S +E+N P ++ S + GY +L Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 >gi|21245038|ref|NP_644620.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306] gi|21110767|gb|AAM39156.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306] Length = 1215 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 18/183 (9%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + +++G Sbjct: 150 AQHIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIEGFVANAR 209 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V L+ PA D + A +A+ Sbjct: 210 HVEVQIFGDGKGRVVALGERDCSLQRRHQKVVEETPAPHLPDATRAALLDAAVKLGEAVN 269 Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F++D ++LE+N P +T A G +L+ WMV Sbjct: 270 YVSAGTVEFIYDAARDAFYFLEVNTRLQVEHP-ITE--------AVTGL---DLVEWMVR 317 Query: 295 DAS 297 A+ Sbjct: 318 IAA 320 >gi|311068393|ref|YP_003973316.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus atrophaeus 1942] gi|310868910|gb|ADP32385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus atrophaeus 1942] Length = 443 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 80/243 (32%), Gaps = 8/243 (3%) Query: 28 DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87 + S +++D+ + K D +G E+ + + + Sbjct: 54 KSRVNESYLNIDK-IIEAAKESKADAIHPG-YGLLSENSIFAERCRKENLTFIGPPPSVI 111 Query: 88 ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIV 143 A K+ +++ + +PV P + ++ + S L I P ++K GG +G+ + Sbjct: 112 AKMGSKIEARKAMEKAHIPVVPGVSESQSDVHSACLAARRIGFPVMLKASAGGGGIGMQL 171 Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203 + ++ + + Y++ + + L Sbjct: 172 VHSEEELIKAYEGNKKRAADFFGDGSMYIEKVIENARHIEIQILADHFGNAVHLFERDCS 231 Query: 204 LKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262 ++ P + D+ + A A ++IG +FL D ++LE+ Sbjct: 232 VQRRHQKVIEEAPSPFVDDDLRTRIGETAVKAARSIGYTNAGTIEFLVDQDKN-FYFLEM 290 Query: 263 NVQ 265 N + Sbjct: 291 NTR 293 >gi|258646722|ref|ZP_05734191.1| pyruvate carboxylase [Dialister invisus DSM 15470] gi|260404151|gb|EEW97698.1| pyruvate carboxylase [Dialister invisus DSM 15470] Length = 1142 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 15/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+ + + D +G E+ + E I + + + DK+ Sbjct: 64 LDI-EDIIRICKEHHVDAVHPG-YGFLAENAELAKRCEEEGIIFIGPRVEHLIMFGDKVN 121 Query: 96 SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ +P+ P + P +IK + GG G+ + + + + Sbjct: 122 ARIQAEKAQIPMIPGTNGAVESFDEVKAFAEEYGFPVMIKAVNGGGGRGMRNVDRMEDLE 181 Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + ++ + + + ++ + ++GD + V + K Sbjct: 182 EAYHRAKSEAKMAFGSDEVYVEKCIMNPKHIEVQILGDEAGHVIHLFERDCSIQRRHQKV 241 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP K+ DI A + + +FL D +++E+N + Sbjct: 242 IEMAPAWSLPQKLREDICS----AAVKLMKNVNYLNAGTVEFLVDQDEEHFYFIEVNPR 296 >gi|325982667|ref|YP_004295069.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas sp. AL212] gi|325532186|gb|ADZ26907.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas sp. AL212] Length = 1067 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 92/298 (30%), Gaps = 39/298 (13%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL + GF+ + D D V ++A KPD G Sbjct: 582 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPDGVIVQYGGQTP 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + I T ++ A ++ + P ++ + + Sbjct: 642 LKLARDLEANGVSIIGTSPDMIDCAEDRERFQKMLQQLGLIQPPNRTVRNPEEALIAAEE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P V++P + ++ + + + ++ ++ +L++ + E+ + Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHERADLERYMREAVKVSNDSPVLLDHFLTHATEVDVDAI 761 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241 D + + + S +S LP +I E++R + + Sbjct: 762 CDGKTVLIGGIMEHIEQ----AGVHSGDSACSLPTFNLQPEILDELRRQTAEMARMLNVV 817 Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299 G+ F V+ LE+N + T P ++ G ++ A C+ Sbjct: 818 GLMNVQFAI--QDDTVYVLEVNPRASRT----VPFISKATGLQLAKI------SARCM 863 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G+++ ++ + + + ++A +P Sbjct: 29 SGVQACKALREEGYRIILVNSNPATIMTDPEMADATYIEPITWNMIEKIIAIERPQALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G D + +LE ++ + A ++ D+ + KQ ++ G+ S Sbjct: 89 TMGGQTALNCALDLVKHGVLEKYDVELIGASREAIDMAEDREKFKQAMTRIGLGSARSAV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + Q ++ P +I+P G + + + + +LLIE+ Sbjct: 149 AHSMEEALQVQAMLGYPVIIRPSFTMGGSGGGIAYNREEFLDICERGLKTSPTKELLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + Sbjct: 209 SVIGWKEFEMEVVRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAINPDNGRMLVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|194335771|ref|YP_002017565.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pelodictyon phaeoclathratiforme BU-1] gi|194308248|gb|ACF42948.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pelodictyon phaeoclathratiforme BU-1] Length = 492 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V + D++ V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVVLVNSNPATIMTDIEFADATYIEPITPEYVQKIIEREKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 + G + V ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNIAVSLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAKEALEEIGLPIVIRPSFTLGGTGGGFAETKADYYDAIRRGLTESPISEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 CLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +PL+ ++ +E+N P ++ S + G+ ++ Sbjct: 269 VRIIREIGVETGGSNIQFAINPLNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|303240753|ref|ZP_07327266.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio cellulolyticus CD2] gi|302591641|gb|EFL61376.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio cellulolyticus CD2] Length = 1070 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G AL++ +V ++ + + V ++ KPD Sbjct: 30 GTQACRALKEENIEVILVNSNPATIMTDTNIADKVYIEPLTPEIVKKIIIEEKPDSILPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111 L G G + ++ LE + + ++ D+ K + G P S + Sbjct: 90 LGGQTGLNLAMELAESGFLEEQGVKLLGTATETIKMAEDRQAFKDTMERIGEPCIASKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 M+ LI P +++P G ++ ++ + + Q+LIE+ Sbjct: 150 TTIEDAMEFAALIGYPVIVRPAYTLGGSGGGIVYNEEELFEIGSNGLRLSRVTQVLIEKC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ + Sbjct: 210 ISGWKEVEYEVMRDGKGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLTDKEYQMLRTAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G +G F P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELGIQGGCNVQFALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 52.6 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 34/289 (11%), Positives = 94/289 (32%), Gaps = 32/289 (11%) Query: 26 LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L++ G++ D V ++ K D G Sbjct: 584 LKEEGYETIIANNNPETVSTDFDTADRLYFEPLTAEDVENIVETEKVDGVIVQFGGQTAI 643 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 ++I T + +A +K + P ++ +++ + + Sbjct: 644 KLTKALDQMGVKIFGTEPYYIDAAEDREKFDAVLEEIGIPRPEGKTVFTLEEALEAANEL 703 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P G+ + D+ + + + +L+++Y+ G E+ + D Sbjct: 704 KYPVLVRPSYVLGGQGMEIAFSDKDVQEFMEIITRVKQEHPILVDKYMMGKEIEVDAICD 763 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243 + P + S +S V P+ I + +++ +A+ G+ Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPSLSISDKLKEKIVDFTKKLAKALHVIGL 819 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 +++ + +++ +E+N + T P ++ G + + Sbjct: 820 VNIQYVY--YNHELYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862 >gi|153953287|ref|YP_001394052.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri DSM 555] gi|219853919|ref|YP_002471041.1| hypothetical protein CKR_0576 [Clostridium kluyveri NBRC 12016] gi|146346168|gb|EDK32704.1| CarB1 [Clostridium kluyveri DSM 555] gi|219567643|dbj|BAH05627.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1068 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G +V ++ + + V+ KPD Sbjct: 29 SGTQACESLREEGMEVVLVNSNPATIMTDREVADKVYIEPLTVEFIEKVIKKEKPDSILP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + V+ LE + + I A D+ R + V Sbjct: 89 GMGGQTALNLTVELYDNKILEKYNVKIIGTSIEAIKKGEDRELFRDTMNKINQPVVESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + ++ + + L + Q+L+E+ Sbjct: 149 VTDIESGIRFAQKIGYPVIVRPAYTLGGTGGGIAENEEELKIILESGLELSSIGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + S + ++ + + Y+ ++ Sbjct: 209 SIKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINEVEIEGGCNVQLALNPHSFEYVVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 87/281 (30%), Gaps = 33/281 (11%) Query: 22 CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60 C L G + I D+ V +L KP G Sbjct: 580 CIKILRKLGIETIIINNNPETVSTDFDISDKLYFEPITEEDVLSILDKEKPYGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + + T + + A +K + P + ++ Sbjct: 640 ETAIKLAEFLKEKNIVTLGTTADQIDMAEDREKFDVLLEKLNIKRPKGKGVWTIDEGLEE 699 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +++P G+ + ++ + L + + + + +LI++Y+ G E+ Sbjct: 700 GRKLGFPVLVRPSYVLGGQGMEITYTEKELAYYLSMAFNKDKKNPILIDKYLMGREIEVD 759 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239 + D + P + S +S + PA+ D +E IG Sbjct: 760 AICDGEDVLI----PGIMEHLERAGVHSGDSITMYPAQNVNDDMREKVLEYTVKLSLGIG 815 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 +G+ F+ ++ +E+N P ++ VS P Sbjct: 816 IKGMINIQFI--EYEGNLYVIEVNPRASRTVPYISKVSNVP 854 >gi|95928751|ref|ZP_01311497.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas acetoxidans DSM 684] gi|95135096|gb|EAT16749.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas acetoxidans DSM 684] Length = 445 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 92/284 (32%), Gaps = 42/284 (14%) Query: 19 GKACASALEDAGFKVSQI--DVD-RSVGLVLAHLK--------PDLAFN----------- 56 A ++ G K + DVD ++ + LA D N Sbjct: 14 ALRILRACKELGIKTVAVHSDVDSEALHVKLADQSVCIGPAPSIDSYLNMKAIISAAEVT 73 Query: 57 ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107 +H G E+ I + + L DK+ ++Q V+S GVP+ Sbjct: 74 DADAIHPGYGFLSENAEFADICNNCGLTFIGPTAENMRLMGDKISARQTVTSAGVPILPG 133 Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWN 161 + + I P +IK GG G+ ++ S+P S + Sbjct: 134 TKDGVPNVEEAVRIAGEIGYPVIIKATAGGGGRGMKIVHSPASLPNAFAAARSEAQSGFG 193 Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221 + + + + + ++ D V + K +LP Sbjct: 194 NPEVYIEKYCERPRHVEIQILADKHGHVIHLGERDCSIQRRHQKLIEEAPCAILPD---- 249 Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 D+ + + A A +A+ + +FL D + +++E+N + Sbjct: 250 DVRQRMGDCAVAAAKAVNYSSVGTIEFLLDA-NNDFYFMEMNTR 292 >gi|168487443|ref|ZP_02711951.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC1087-00] gi|225859069|ref|YP_002740579.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae 70585] gi|254813604|sp|C1C7Q3|CARB_STRP7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|183569715|gb|EDT90243.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae CDC1087-00] gi|225721866|gb|ACO17720.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pneumoniae 70585] Length = 1058 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|115360498|ref|YP_777635.1| pyruvate carboxylase [Burkholderia ambifaria AMMD] gi|115285826|gb|ABI91301.1| pyruvate carboxylase [Burkholderia ambifaria AMMD] Length = 1169 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 15/239 (6%) Query: 36 IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95 +D+D + V K D +G E+ + I + +K+ Sbjct: 65 LDID-DILRVARQAKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 122 Query: 96 SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151 ++ + GVPV P+ + P ++K GG G+ V++ Q + Sbjct: 123 ARNAAIAAGVPVMPATAPLPDDLDACKVLAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 182 Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 L + + + + + + + + V+GD V + + Sbjct: 183 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTVQ----RR 238 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + + + A +A+G +FL D + + +++E+N + Sbjct: 239 NQKVVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 297 >gi|114569693|ref|YP_756373.1| pyruvate carboxylase [Maricaulis maris MCS10] gi|114340155|gb|ABI65435.1| pyruvate carboxylase [Maricaulis maris MCS10] Length = 1146 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 1/151 (0%) Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 + P ++K GG G+ VI++ + E Y++ + Sbjct: 145 DWDTMAEAVGYPLMLKASWGGGGRGMRVIEEAGELHAQAEAGRREAEAAFGNGEVYLEKL 204 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234 + L + + ++ + P + D + A Sbjct: 205 IRKARHIEVQILGDSHGNLVHLYERDCTVQRRNQKVVERAPAPDMGEDTRSAICEAALRL 264 Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + G G +FL D + K +++E+N + Sbjct: 265 VRHAGYCGAGTVEFLLDAETGKFYFIEVNPR 295 >gi|311696040|gb|ADP98913.1| urea amidolyase related protein [marine bacterium HP15] Length = 1208 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 16/180 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + +++ Sbjct: 152 ADTIGYPVMLKSTAGGGGIGMSRCYGPDDLGKSFESVQRLSQNNFSNSGVFLEKFVEHAR 211 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239 + + V + + PA D+ + A ++IG Sbjct: 212 HVEVQLFGDGQGQVLALGERDCSAQRRNQKVIEEAPAPGLSDDVRSRMHATARQLGKSIG 271 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 R +F++DP + + ++LE+N + G+T G +L+ WMVE Sbjct: 272 YRSAGTVEFIYDPDTTEFYFLEVNTRLQVEHGVTE--------QVYGV---DLVRWMVEL 320 >gi|291277025|ref|YP_003516797.1| carbamoyl-phosphate synthase large chain [Helicobacter mustelae 12198] gi|290964219|emb|CBG40068.1| carbamoyl-phosphate synthase large chain [Helicobacter mustelae 12198] Length = 1086 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G++V I+ + + ++ K D Sbjct: 29 SGTQAVKTLKSLGYRVVLINSNPATIMTDPEFADRTYIEPITEEVIYHIIQTEKVDAILP 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +LE +E + + + VP Sbjct: 89 TMGGQTALNVAMKMYEKGMLEGIEFLGARPEAIKKGEDRQIFKETMLKIGMDVPKSFYAY 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 +++ I P +I+ + G V + + +++LIE+ + Sbjct: 149 NEEQALEAAKAIGFPIIIRASFTLAGGGSGVAYNIEEFQALAKAGLEASPINEILIEESL 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 G + + D I + + + + + Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDCSFA 268 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + G S F P + ++ +E+N P ++ S + GY ++ + Sbjct: 269 ILREIGVDTGGSNVQFAIHPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 85/266 (31%), Gaps = 18/266 (6%) Query: 32 KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89 V + V VL KPD ++H + + I + + Sbjct: 612 DVLYFEPIGFEFVRAVLQKEKPDGV--IVHFGGQTPLKLAKEIAKFGIKIIGTSAKVIDI 669 Query: 90 SMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147 + D+ + V G+ + + P +++P + +++ Sbjct: 670 AEDREKFSAFVKEHGLRQPDNGIAFNKEEAHLIASKLGFPVLVRPSYVLGGRAMRIVENA 729 Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 Q + + ++ + +LI++++DG IEL + D + + E Sbjct: 730 QDLRAYMEEAVRVSEDSPVLIDKFLDGAIELDVDCICDGEQVYIGGILQHIE----EAGI 785 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFL-AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 S +S LP D + + +G G+ + + ++ +E+N + Sbjct: 786 HSGDSASSLPTITIGDAMLLEIKQTTALIAKKLGVVGLMNVQYAI--YNDALYLIEVNPR 843 Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291 T P ++ G ++ Sbjct: 844 ASRT----VPFVSKATGMPLAKIATR 865 >gi|6634621|emb|CAB64501.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634624|emb|CAB64503.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634627|emb|CAB64505.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634630|emb|CAB64507.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634633|emb|CAB64509.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634636|emb|CAB64511.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] gi|6634693|emb|CAB64541.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae] Length = 46 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 N PG T S++P + G S+ EL+ +V+ A Sbjct: 1 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 34 >gi|125623920|ref|YP_001032403.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis subsp. cremoris MG1363] gi|146345385|sp|O32771|CARB_LACLM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|124492728|emb|CAL97683.1| carbamoyl-phosphate synthase, large subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300070694|gb|ADJ60094.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis subsp. cremoris NZ9000] Length = 1064 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + ++ ILE L + + + A + D+ + + + Sbjct: 90 LGGQTGLNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q LIE+ Sbjct: 150 TTVEEAINIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIRALKIEGGCNVQLALDPNSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 80/267 (29%), Gaps = 12/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ +P G + ++I T L Sbjct: 606 DKLYFEPLTF---EDVMNVIDLEEPLGVIVQFGGQTAINLAEPLSKAGVKILGTQVEDLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D P + + + + I P +I+P + +I Sbjct: 663 RAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVLIRPSFVLGGRAMEIINN 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ + +L++ Y+ G E + D + + + + Sbjct: 723 EKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVLLPGIMEHIERAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + I + + C G+ F+ +V+ +E+N + Sbjct: 780 SGDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMNIQFVIYEE--QVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ +L M+ Sbjct: 838 SRT----VPFLSKVTNIPMAQLATQMI 860 >gi|307326799|ref|ZP_07605991.1| carbamoyl-phosphate synthase, large subunit [Streptomyces violaceusniger Tu 4113] gi|306887562|gb|EFN18556.1| carbamoyl-phosphate synthase, large subunit [Streptomyces violaceusniger Tu 4113] Length = 1103 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 38/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V ++ + V ++A +PD Sbjct: 29 SGTQACRVLKSEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + L+ + + + A D+ + K+VV + + Sbjct: 89 TLGGQTALNTAISLHQAGTLDEYGVELIGANVEAIHKGEDRDQFKRVVEAVHAKIGHGES 148 Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 S I P V++P G + + Q + + Sbjct: 149 ARSVICHSMDDILAGVEELGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLALSPTT 208 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++L+E+ + G + + D + +F + + + Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + + G F +P +V +E+N P ++ S + G+ Sbjct: 269 ILRDIGIAVIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324 Query: 285 FRELLLWM 292 ++ + Sbjct: 325 IAKIAARL 332 >gi|291515967|emb|CBK65177.1| carbamoyl-phosphate synthase large subunit [Alistipes shahii WAL 8301] Length = 1060 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57 G AL++ G++V + ++ V ++ +PD Sbjct: 30 GTQACLALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + VQ IL+ ++ + + + D+ + V Sbjct: 90 LGGQTGLNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVLPSHIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + + I P V++P G + + + + S + Q+L+E+ Sbjct: 150 MSIEEAVAVAEEIGYPVVLRPAFTLGGTGGGFADDETELREMMRNALSLSPVHQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I + + ++ + + ++ ++ A Sbjct: 210 IKG-YKEIEYEVMRDRNDTAICICCMENIDPVGIHTGDSIVVAPSQTLTNKEFQMLRDSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + G F DPLS K + +E+N P ++ S + +GY + Sbjct: 269 LKIIRELKIEGGCNVQFALDPLSFKYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 84/289 (29%), Gaps = 29/289 (10%) Query: 26 LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64 + AG++ I D S L L + NV+H G Sbjct: 578 IRAAGYEAIIINNNPETVSTDYTTSDKLYFEPLTVEDVMNVIHLEKPKAIVVSLGGQTAI 637 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + + +A P ++ + + I Sbjct: 638 NLAEPLAELGVPIIGTDTQAIKNAEDRGCFERIMEELGIPQPEAEAVTDIESGVRAAARI 697 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P + ++ ++ + L + + +L+++Y+ G EL + D Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEIDVDQPVLVDRYIMGKELEVDAICD 757 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + + + + + ++ IG G+ Sbjct: 758 GKEVFIPGIMEHVEHTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVKLGLRIGIVGLY 814 Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F+ V+ +E+N + T P ++ G + ++ Sbjct: 815 NIQFIVAGEDD-VYVIEVNPRSSRT----VPFLSKSTGVPMAHIATQVI 858 >gi|253579875|ref|ZP_04857143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848874|gb|EES76836.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1071 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + + T + + A + + + + Sbjct: 90 LGGQAGLNLAMELDEKGFLKEHNIRLIGTTAQTIKKAEDRQEFKDTMEKIGEPIAASKVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + ++I P V++P G + + + L + ++L+E+ Sbjct: 150 TTVEDGLAFTNIIGYPVVLRPAYTLGGSGGGIAHNEYELREILENGLRLSRVGEVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELGITGGCNVQYALKPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ I D D V V+ KPD A G Sbjct: 584 AFAKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENVVNIEKPDGAVVQFGGQTA 643 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 ++I T + + +A + P ++ + + Sbjct: 644 IKLTEALTKMGVKILGTSAENVDAAEDRELFDEILEKCEIPRPKGQTVFTAEEAKKAANE 703 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ + + + +L+++Y+ G E+ + Sbjct: 704 LGYPVLVRPSYVLGGQGMRIAVSDEDVEEYIGVINQIAQEHPILVDKYLMGKEIEVDAVC 763 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242 D + P + S +S V PAK + KE +A+ G Sbjct: 764 DGEDILI----PGIMEHIERAGIHSGDSISVYPAKTISEKAKETIAEYTRRLARALHVIG 819 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ G L ++ Sbjct: 820 MINIQFIVLGDD--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 864 >gi|67537040|ref|XP_662294.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4] gi|40741542|gb|EAA60732.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4] gi|259482474|tpe|CBF76992.1| TPA: 3-methylcrotonyl-CoA carboxylase biotin-containig subunit3-methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4);(EC 6.4.1.4) [Source:UniProtKB/TrEMBL;Acc:Q6T5L7] [Aspergillus nidulans FGSC A4] Length = 712 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57 E++L G+ A G +V+ + D A P AFN+ Sbjct: 50 EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104 Query: 58 --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +H G E+ + + A DK +SK ++++ GVP Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 164 Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157 P + I P +IK +KGG G+ + + + L Sbjct: 165 CVPGYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +S+ L+ + + V D + + K + LP Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 284 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 DI+ + + A + G +F+FD + + F++E+N + Sbjct: 285 ATRKDIWAKARSAALA----VRYEGAGTVEFIFDNDTGEFFFMEMNTR 328 >gi|149002646|ref|ZP_01827578.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS69] gi|147759257|gb|EDK66250.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS69] Length = 714 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 235 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 294 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 295 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDISQPPGQTATNEEEAALAAR 354 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 355 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 414 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + + + + + C G Sbjct: 415 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 471 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 472 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 516 >gi|70998028|ref|XP_753746.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus fumigatus Af293] gi|66851382|gb|EAL91708.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus fumigatus Af293] gi|159126517|gb|EDP51633.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus fumigatus A1163] Length = 756 Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 44/288 (15%) Query: 13 EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56 E++L G+ + G KV+ + D A P AFN Sbjct: 48 EIALRVGRTASQH----GIKVTTLYTDPDRYAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102 Query: 57 -------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106 +H G E+ + + A DK +SK+++++ GVP Sbjct: 103 AKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 162 Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157 P + ++ I P +IK +KGG G+ + + L Sbjct: 163 CVPGYHGSNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIARSKAEFQAQLQSAKSEAM 222 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 +S+ L+ + + + D + + K + LP Sbjct: 223 NSFGDDHVLVEKYITTPRHIEVQIFADKYGNCVALGERDCSIQRRHQKILEESPAPHLPD 282 Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 DI+ + + A +G G +F+FD + + F++E+N + Sbjct: 283 ATRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326 >gi|116492119|ref|YP_803854.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus ATCC 25745] gi|122266417|sp|Q03HB0|CARB_PEDPA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116102269|gb|ABJ67412.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus ATCC 25745] Length = 1057 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 31/281 (11%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 A+ G++ ++ + V V+ KP+ G Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEDVMNVIDLEKPEGVIVQFGGQ 637 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + ++I T + A D+ + P + +++ Sbjct: 638 TAINLAEPLAERGIKIFGTTVENVNRAEDRDEFNKLIQANGIRQPQGRTATTTSGAIEAA 697 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P +++P + ++ + + + + +H +L++QY+ G E V Sbjct: 698 ESIGYPVLVRPSYVLGGRAMEIVHAKEELENYMKNAVKVSHNHPVLVDQYLVGKECEVDV 757 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241 + D V + + +S + T + + E+ +++ Q++ C Sbjct: 758 ISDGENVVIPGIMEHIERSG---VHSGDSMTVYPAQTLSQKVQDEIVKVSIKLAQSLECI 814 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 G+ F+ + + + +E+N P M+ V+ P Sbjct: 815 GLMNIQFVV--HNDEAYVIEVNPRASRTVPIMSKVTDLPMA 853 Score = 52.6 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFN 56 SG +L++ G++ I D+ V +L PD Sbjct: 29 SGTQACLSLKELGYQTVLINSNPATIMTDTDIADKVYIEPLTLQFVSQILRKELPDAILP 88 Query: 57 VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + ++ +E+ T + A ++ R+ + VP Sbjct: 89 TLGGQQGLNMAMELSEAGILDELGIELLGTKLDAIDQAEDRERFRALMNDLNEPVPDSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P +++P G + + + + + + Q+LIEQ Sbjct: 149 ATTVEEAVSFADQSGYPVIVRPAFTMGGTGGGIAQDEAELRKITANGLTLSPVTQVLIEQ 208 Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + G E+ VM D+ + + ++ S+ V + + ++ Sbjct: 209 SIAGLKEIEFEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVYAPVQ--TLTDREVQMLRD 266 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + +A+ G DP + + +E+N P ++ S + GY ++ Sbjct: 267 ASLSIIRALKIEGGCNVQLALDPAQDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVA 322 Query: 290 LWM 292 + Sbjct: 323 AKI 325 >gi|330752600|emb|CBL87545.1| carbamoyl phosphate synthase large subunit [uncultured Flavobacteria bacterium] Length = 938 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG + +L + G +V+ I+ + S+ VL + K D Sbjct: 29 SGSQASRSLREEGIEVTLINSNPATIMTDKVVADNIYLKPLEPDSIIEVLKNHKIDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + ++ E + I A ++ ++ + ++++ GV + P Sbjct: 89 TMGGQTALNLCIKCDELGIWEDYNVKIIGVDINAIEITENRQKFRKLMDEIGVAMAPQSI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + P I+P G ++ + L + + +++I++ Sbjct: 149 AKSFLQGKEIAQKYGFPLCIRPSYTLGGSGASIVYDEAEFDKLLTRGLHASPIHEVMIDK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 AVMGWKEYELELLRDKNDNVTIICSIENLDPMGIHTGDSITVAPAMTLSDTTYQEMRNQA 268 Query: 231 AFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G F D + + +EIN P ++ S + GY ++ Sbjct: 269 IKMMRSIGDFSGGCNVQFAVSDDANEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 SKL 327 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 32/283 (11%) Query: 20 KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +A +++G++ I D D + ++ H KP+ L Sbjct: 581 HGVLAA-KESGYETIMINCNPETVSTDFDTADKLYFEPVFWEHIYDIILHEKPEGVIVQL 639 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + + + T L A ++ P + + Sbjct: 640 GGQTALKLAEKLDRYGIMVIGTTFQALDLAEDRGSFSKLLKENNIPYPKFGVVKSAEQAI 699 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177 + + P +++P + ++ + + ++ +++L++ Y+DG IE Sbjct: 700 ELSKDLGFPLLVRPSYVLGGQKMKIVINENELEHHVVDILRDMPDNKILLDHYLDGAIEA 759 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + + P + I ++++ A Sbjct: 760 EADAICDGERVQIIGIMQHIEPAGIHSG---DSYAVLPPFNLGDYIIQQIEEHTHKIALA 816 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 + G+ F V+ +E N + T P +A Sbjct: 817 LKTVGLINIQFAI--KDDVVYIIEANPRASRT----VPFIAKA 853 >gi|225570405|ref|ZP_03779430.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM 15053] gi|225160776|gb|EEG73395.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM 15053] Length = 1065 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 91/291 (31%), Gaps = 32/291 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A G++ + D D V ++ KPD A G Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDLEKPDGAVVQFGGQTA 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A ++ P ++ + + Sbjct: 641 IKLTEALMKMGVPILGTSAENVDAAEDRERFDEILEACRIPRPTGGTVYTAEEAKEVANR 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D I + + +L+++Y+ G E+ + Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 D + P + S +S V PA+ + K ++ Q++ G Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSISEKTKKTIEDYTRKLAQSLHVIG 816 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ G L ++ Sbjct: 817 LINIQFIVCGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/317 (10%), Positives = 89/317 (28%), Gaps = 40/317 (12%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G +V ++ D+ + ++ KPD Sbjct: 30 GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89 Query: 58 LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111 L G + L G + + R + + + + + Sbjct: 90 LGGQAALNLAMELDENGFLRRNNVRLIGTTTETIKKAEDRLEFKTTMEKIGEPCAASLVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P V++P G + + + L + Q+L+E+ Sbjct: 150 EHVDDGVRFAEKIGYPVVLRPAYTLGGSGGGIAGDREQLVEILENGLRLSRVGQVLVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G + P + + +E+N P ++ S + GY ++ Sbjct: 269 LNIISELNITGGCNVQYALHPDTFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M--------VEDASCLR 300 + +++A + Sbjct: 325 IALGYTLDEIKNAVTKK 341 >gi|119479537|ref|XP_001259797.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Neosartorya fischeri NRRL 181] gi|119407951|gb|EAW17900.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Neosartorya fischeri NRRL 181] Length = 712 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 84/238 (35%), Gaps = 13/238 (5%) Query: 37 DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 +D + +A + A + +G E+ + + A DK +S Sbjct: 93 YLDGDRIIEIAKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQS 152 Query: 97 KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+++++ GVP P + ++ I P +IK +KGG G+ + + Sbjct: 153 KKIMTAAGVPCVPGYHGSNQDVNFLEAEADKIRYPVLIKAVKGGGGKGMRIARSKAEFQA 212 Query: 153 DLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 L +S+ L+ + + V D + + K Sbjct: 213 QLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL 272 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP DI+ + + A +G G +F+FD + + F++E+N + Sbjct: 273 EESPAPHLPDATRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326 >gi|82702072|ref|YP_411638.1| allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC 25196] gi|82410137|gb|ABB74246.1| Allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC 25196] Length = 1212 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 79/255 (30%), Gaps = 22/255 (8%) Query: 56 NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 N +H G E I + K ++++ VP+ P Sbjct: 76 NAIHPGYGFLSEKAEFAEQCADHGISFIGPTPHQMRAFGLKHTARKLALQNRVPLLPGTG 135 Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + I P ++K GG +GI + + + + + Sbjct: 136 LLEDLDEALRQAAHIGYPVMLKSTAGGGGIGIRLCWNKEELSANYELVKYLAQNNFKDAG 195 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228 +++ + + V ++ + PA P + + + Sbjct: 196 LFLEKYVEKARHIEVQIFGDGKGGVIALGERDCSMQRRNQKVIEETPAPDLPPRVRQALL 255 Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284 A +++ + +++FD + + ++LE+N + G+T G Sbjct: 256 NAAVRLGKSVNYQSAGTVEYIFDASAAEFYFLEVNTRLQVEHGVTE--------EVTGI- 306 Query: 285 FRELLLWMVEDASCL 299 +L+ WMV A+ Sbjct: 307 --DLVEWMVRQAAGD 319 >gi|85703445|ref|ZP_01034549.1| pyruvate carboxylase [Roseovarius sp. 217] gi|85672373|gb|EAQ27230.1| pyruvate carboxylase [Roseovarius sp. 217] Length = 1146 Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 1/153 (0%) Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 + + P ++K GG G+ I+ + + + + E Y++ Sbjct: 144 MKAIRKQAKEVGYPLMLKASWGGGGRGMRPIENESELEDKVREGRREAEAAFGNGEGYLE 203 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232 + L + L + ++ + PA + +E + Sbjct: 204 KMILRARHVEVQILGDKHGNMYHLFERDCSVQRRNQKVVERAPAPYLSETQREEICQLGY 263 Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + + +FL D + K +++E+N + Sbjct: 264 KICKHVNYECAGTVEFLMDMDTGKFYFIEVNPR 296 >gi|301058692|ref|ZP_07199693.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium NaphS2] gi|300447256|gb|EFK11020.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium NaphS2] Length = 1078 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL + GF++ I+ + +V ++ +P Sbjct: 29 SGTQACKALMEEGFEIVLINSNPATIMTDPGTAHRTYIEPITAEAVSRIIERERPQAILP 88 Query: 57 VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + V+ + E+ ++ A ++ R+ VP Sbjct: 89 TLGGQTGLNTAVEVAESGILEKLGVEMLGASLPVIQKAEDREQFRNAMKKIGLKVPDNFI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+ +G V + + ++++E+ Sbjct: 149 ARNMDEARYAAEQIGYPIIIRASYTLGGIGSGVAYNRDEMEEIAKAGLDASMISEVIMER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 SLLGWKEYELEVMRDFKDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDYEYQIMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 LAIIREIGVETGGSNIQFAVHPDTGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 84/255 (32%), Gaps = 10/255 (3%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ P+ G + V ++I T + A ++ + Sbjct: 629 EDVLHIVEQENPEGIIVQFGGQTPLNLSVPLAETGVKILGTSPDSIDQAEDRERFQVMLK 688 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159 P + R + I P V++P + ++ + + + + Sbjct: 689 KLGILQPENGIAVNQRQAIHIADRIGYPVVVRPSFVLGGRAMEIVYDQKDLEYYMETAVQ 748 Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + G +LI++++DG +E+ + D V + + ++ + P Sbjct: 749 VSPGKPVLIDRFLDGAVEIDVDAISDGQTTVIGGIMEHIEEAGIHSG---DSACVLPPVS 805 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + DI + + + + G+ + + ++ +E+N + T P ++ Sbjct: 806 LEPDILETIMEHTRALARELSVVGLMNIQYAV--KAGIIYVIEVNPRASRT----VPFVS 859 Query: 279 AYAGYSFRELLLWMV 293 G ++ ++ Sbjct: 860 KATGVPLAKMATQVI 874 >gi|70953499|ref|XP_745847.1| carbamoyl phosphate synthetase [Plasmodium chabaudi chabaudi] gi|56526295|emb|CAH75934.1| carbamoyl phosphate synthetase, putative [Plasmodium chabaudi chabaudi] Length = 2105 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 32/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53 G S E + S C + K I D D S L + ++ Sbjct: 1583 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1639 Query: 54 --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 G + + + I + + + + +K Sbjct: 1640 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 1699 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P M + + P +++P S + V+ + + L++++ + + Sbjct: 1700 PKWNKFTKLSKAMQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 1759 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++I ++++ + + + A+ + + + I ++ ++ Sbjct: 1760 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1817 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++++ + + G F+ ++ +E N + FP ++ +F Sbjct: 1818 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1871 Query: 286 RELLLWMV 293 +L ++ Sbjct: 1872 IDLATRIL 1879 Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/296 (9%), Positives = 85/296 (28%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L++ G V ++ + V ++ KPD Sbjct: 622 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 681 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110 G + +L+ + + + ++ ++ + + + S Sbjct: 682 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGS 741 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + I P +++ L I ++ + + +++ I++ Sbjct: 742 AKNVEEAIEVANNIGYPILVRTTFSLGGLNSSFINNEEELIEK-CKEIFLQTDNEIFIDK 800 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + + + Y + + + Sbjct: 801 SLKGWKEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYE-YYKFREI 859 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A + G F +P + + +E+N + ++ S + GY Sbjct: 860 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 911 >gi|239827222|ref|YP_002949846.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp. WCH70] gi|239807515|gb|ACS24580.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. WCH70] Length = 450 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 2/146 (1%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ +++ ++ + + Y++ Sbjct: 148 AEEIGYPIMLKASAGGGGIGMQIVRNEEELRKAFEGNQKRAASFFGDGAMYLEKYIANPR 207 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239 + L ++ P+ + + A A + IG Sbjct: 208 HIEIQLLSDEHGNCIYLWERECSIQRRHQKVIEEAPSPFLDEETRRKMGETAVKAAKHIG 267 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265 +FL D ++LE+N + Sbjct: 268 YTNAGTIEFLVDEQKN-FYFLEMNTR 292 >gi|147676840|ref|YP_001211055.1| carbamoylphosphate synthase large subunit [Pelotomaculum thermopropionicum SI] gi|189081831|sp|A5D508|CARB_PELTS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|146272937|dbj|BAF58686.1| carbamoylphosphate synthase large subunit [Pelotomaculum thermopropionicum SI] Length = 1083 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 35/293 (11%) Query: 26 LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64 L+ G + I D D V V+ KP G Sbjct: 583 LQQEGIEAVIINNNPETVSTDFDTADKLYFEPLTLEDVLNVIEKEKPLGVIVQFGGQTAI 642 Query: 65 DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124 + + I T + +A DK S + + Sbjct: 643 NLTAGLAALGVNILGTPVEGIDAAEDRDKFEKLLTGLGIPQSEGRSAVNVEEAQAVAEKL 702 Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184 P +++P + +I + + ++ + +L+++Y+ G E+ +GD Sbjct: 703 GYPVLVRPSYVLGGRAMEIISSKTELVKYMTEAVQVSPRHPVLVDKYIRGKEVEVDAIGD 762 Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244 + + + +S + P + + ++ +A+ G+ Sbjct: 763 GNDLFIPGIMEHIERAG---VHSGDSIAVYPPQTLSREEIDKIVEYTLKIGRALKINGLI 819 Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288 ++ D + V+ LE+N P ++ V+ P + A G S EL Sbjct: 820 NIQYVVD--NGGVYVLEVNPRASRTVPVLSKVTGVPMVQAATRAMLGRSLAEL 870 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57 G AL + G V + D+D SV ++A +PD Sbjct: 30 GTQACKALREEGVSVVLVNSNPATIMTDLDIADQVYIEPLAWDSVAEIIARERPDGLLPT 89 Query: 58 LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + + +L+ + + + + + ++ ++ + VP Sbjct: 90 LGGQTGLNIAVELSEKGVLQDYGVELLGTPLESIKKAENRELFKNLMLEIGEPVPRSTIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++Q + + + Q+L+EQ Sbjct: 150 GSVEECLAFAGEIGYPVIVRPAYTLGGTGGGIACREQELVEIAGRGLKMSMIGQVLLEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D + ++ + + Y+ ++ A Sbjct: 210 VAGWKEIEYEVMRDGADNCITVCNMENVDP-VGIHTGDSIVVAPSQTLSDKEYQLLRSAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G F D S + +E+N P ++ S + GY ++ Sbjct: 269 LRIIRALKVEGGCNVQFALDLNSMAYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|312136530|ref|YP_004003867.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus DSM 2088] gi|311224249|gb|ADP77105.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus DSM 2088] Length = 1066 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 86/293 (29%), Gaps = 32/293 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G K ++ + + V ++ PD Sbjct: 29 SGSQACKSLREEGVKTILVNSNPATIQTDLEIADKIYLEPLTPKIVAKIIERENPDALLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G L+ +++ + + + + VP ++ Sbjct: 89 TMGGQTALNVATKLSEMGALKDIKVIGSSIETIQRVEDREMFANFMKKIGEPVPKYRAVN 148 Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 ++ I P +++P G V K + + + + +Q+LI+Q V Sbjct: 149 SVEEAFEAVEEIGFPVIVRPAYTLGGTGGGVAKNKKELEEVVSHGLKMSLVNQVLIDQSV 208 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLA 231 G + + + S V PA+ D + + A Sbjct: 209 IG--WKEFEYEVMRDRKGTCITVCNMENVDPMGIHTGESIVVAPAQTLSDEDNQKLRSAA 266 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 A+G G F +P + +E+N P ++ S + GY Sbjct: 267 LKIIDALGIEGGCNIQFALNPETGDYLVIEVN--PRVSRSS--ALASKATGYP 315 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/292 (11%), Positives = 89/292 (30%), Gaps = 31/292 (10%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL++ GF+ ++ + V ++ KPD G Sbjct: 572 ALKNEGFETIMVNNNPETVSTDYDVSDKLYFEPLTAEDVLEIIEKEKPDGVIVQFGGQSS 631 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + E ++I T + ++ P + Sbjct: 632 INLAEDLEKEGVKILGTPYESIDKVEDRERFTKVLKKLGIPHPPYGIARSFKEAKKIAKK 691 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182 I P +++P + ++ D+ + + ++ + +LI+++ D IE+ + Sbjct: 692 IGYPVLVRPSYVLGGRAMEIVYNDKELKEYIEEAVKVSPRHPILIDKFLEDAIEVDVDAL 751 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + +S ++ + P + + + ++ + G Sbjct: 752 SDGEDVFIAGIMEHIEEAG---VHSGDSACVIPPQTLSKETIETIEEYTRKLALELKVVG 808 Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + + + K + LE N + T P ++ G S ++ + Sbjct: 809 LINIQYAVKNENGKPKVYVLEANPRASRT----VPFVSKAIGISLAKIAAML 856 >gi|289432887|ref|YP_003462760.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp. GT] gi|288946607|gb|ADC74304.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp. GT] Length = 1079 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G A+ + G + ++ + S+ ++ +PD Sbjct: 27 GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 86 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V +L + + I + D+ + VP ++ Sbjct: 87 LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 146 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + H+I P VI+P G + + + Q+L+E+ Sbjct: 147 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 206 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + + + ++ + Sbjct: 207 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 265 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G +P + + +E+N P ++ S + GY + Sbjct: 266 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 321 Query: 292 M 292 + Sbjct: 322 I 322 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ + + + N G +LI++Y+ G E+ Sbjct: 699 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239 + D P + S +S V P + + + +A+ Sbjct: 759 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 814 Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 RG+ F+ V+ LE+N + T P ++ G ++ Sbjct: 815 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 863 >gi|291295303|ref|YP_003506701.1| carbamoyl-phosphate synthase large subunit [Meiothermus ruber DSM 1279] gi|290470262|gb|ADD27681.1| carbamoyl-phosphate synthase, large subunit [Meiothermus ruber DSM 1279] Length = 1038 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 90/299 (30%), Gaps = 32/299 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL G++V ++ + + ++A +PD Sbjct: 29 SGTQAVKALRSVGYQVVLVNSNPATIMTDPELAEGTYLEPLTVEFLEKIIAAERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + LE + + A D+ ++ + GV V + Sbjct: 89 TLGGQTALNLSMALYEQGILEKYGVELIGANAAAIKKGEDREEFQKAMLKIGVDVPRGKM 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 V+ P V++P G + + + L + S + L+E Sbjct: 149 VHSLEEGLAFAREVTGYPVVVRPSFTLGGTGGGIAENEAEFVEILSRGLSLSPTHSALVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + ++ + Sbjct: 209 ESIVGWKEYELEVMRDKNDTVVIITSIENLDPMGVHTGDSITVAPAQTLSDVEYQRMRDA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + G S F DP S ++ +E+N P ++ S + G+ ++ Sbjct: 269 AIAIIREIGVETGGSNIQFAIDPKSGRMIVIEMN--PRVSRSS--ALASKATGFPIAKI 323 Score = 35.6 bits (80), Expect = 9.1, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 81/268 (30%), Gaps = 17/268 (6%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V + H KP L G + L +P + A Sbjct: 627 DRLYFEPLTL---EDVLNLAEHEKPIGVIATLGGQ--TPLKLAKKLAEAGVPLLGTSWEA 681 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144 + D+ Q+ ++ G+P + + P + +P + V+ Sbjct: 682 IHKAEDRAEFNQLCAALGIPQPKGAVARTPEEALKLAETLGYPLMARPSYVLGGRAMQVV 741 Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204 + + + L + ++ L V +A Sbjct: 742 RNPEELRWYLSGIYAALAERPSILLDQYLENALELDVDALCDGKQVVVAGIMEH-IERAG 800 Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264 +S ++T + P + + + V+ A+G RG+ + V+ LE N Sbjct: 801 VHSGDSATILPPISLTPEQLETVKAYTRKLALAVGVRGLINVQYAI--KDGVVYILEANP 858 Query: 265 QPGMTPVSIFPEMAAYAGYS---FRELL 289 + T P ++ G+ + L+ Sbjct: 859 RASRT----VPFVSKAIGHPLAKYAALI 882 >gi|56609589|gb|AAW03322.1| hypothetical protein [Cystobacter fuscus] Length = 1075 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56 SG AL + G +V ++ D +LA +PD Sbjct: 29 SGTQAIKALREEGVEVVLLNSNPATVMTDPEFAHRTYIEPITVEVAERILAQERPDSVLP 88 Query: 57 VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110 + G + Q IL+ + + + A + D+ K +P Sbjct: 89 TMGGQTALNLAKALAEQGILDKYGVRLIGASLEAINKAEDRQLFKAAMQKIGVALPRSGY 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +I+P G + + + +L+E+ Sbjct: 149 ASNMQEALALIDDIGFPTIIRPSFTLGGTGGGIAYNREEFEAICRSGLKASPNSTILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + S D I + + + + + + Sbjct: 209 SVLGWKEYELEVVRDSADNVIIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLREAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + GY ++ Sbjct: 269 LRIIREIGVDTGGSNIQFGVNPADGRIVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 28/285 (9%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D D V V KP A G Sbjct: 588 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTIEDVLEVSQREKPVGAIVQFGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 V L I T + A ++ P + Sbjct: 648 LRLSVPLEKAGLPILGTSPDAIDRAEDRERFAQLIEKLGLTQPENGVARSHEEAYRVAQR 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + V+ QS+ + ++ S + +LI++++ + + Sbjct: 708 IGYPVMVRPSYVLGGRAMEVVYDQQSLERYMREAVSASPEHPVLIDRFLK-EAIEVDLDL 766 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 A + + +S + + P + D+ + ++ A + +G G+ Sbjct: 767 VADRTGAVLVGGVLEHVEEAGVHSGDAACTLPPHSLSPDLVERMKDQAMALAKELGVVGL 826 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F +K++ LE+N + T P ++ G ++ Sbjct: 827 MNVQFAI--QGKKIYILEVNPRASRT----VPFISKATGMPLAKI 865 >gi|73748891|ref|YP_308130.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp. CBDB1] gi|73660607|emb|CAI83214.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp. CBDB1] Length = 1089 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G A+ + G + ++ + S+ ++ +PD Sbjct: 37 GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 96 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V +L + + I + D+ + VP ++ Sbjct: 97 LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 156 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + H+I P VI+P G + + + Q+L+E+ Sbjct: 157 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 216 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + + + ++ + Sbjct: 217 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 275 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G +P + + +E+N P ++ S + GY + Sbjct: 276 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 331 Query: 292 M 292 + Sbjct: 332 I 332 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ + + + N G +LI++Y+ G E+ Sbjct: 709 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 768 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239 + D P + S +S V P + + + +A+ Sbjct: 769 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 824 Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 RG+ F+ V+ LE+N + T P ++ G ++ Sbjct: 825 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 873 >gi|147669652|ref|YP_001214470.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp. BAV1] gi|146270600|gb|ABQ17592.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp. BAV1] Length = 1079 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G A+ + G + ++ + S+ ++ +PD Sbjct: 27 GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 86 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + V +L + + I + D+ + VP ++ Sbjct: 87 LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 146 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + H+I P VI+P G + + + Q+L+E+ Sbjct: 147 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 206 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + D +F + + + + ++ + Sbjct: 207 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 265 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G +P + + +E+N P ++ S + GY + Sbjct: 266 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 321 Query: 292 M 292 + Sbjct: 322 I 322 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P V++P + ++ + + + N G +LI++Y+ G E+ Sbjct: 699 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 758 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239 + D P + S +S V P + + + +A+ Sbjct: 759 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 814 Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 RG+ F+ V+ LE+N + T P ++ G ++ Sbjct: 815 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 863 >gi|325288620|ref|YP_004264801.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus glycolicus DSM 8271] gi|324964021|gb|ADY54800.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus glycolicus DSM 8271] Length = 1075 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%) Query: 19 GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57 G AL++ G +V ++ + ++ +LA KPD Sbjct: 30 GTQACKALKEIGLEVILVNSNPATIMTDVQMADKTYIEPLVPQTLEKILAKEKPDALLPS 89 Query: 58 LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111 L G G + ++ L + + D+ K+++ + V + Sbjct: 90 LGGQTGLNLAMELQNQGILAKYGVELIGCTAETIYKAEDREAFKEMMLDIAEPVAESSIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P +++P G + + + L + + +Q L+EQ Sbjct: 150 GTLEEGDQFAEKIGYPVIVRPAYTLGGTGGGIACGKKQLREILTRGLQASPINQCLLEQS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G + + + D + + + Y+ ++ + Sbjct: 210 VAGWKEIEYEVMRDAEDNCITVCNMENLDPVGIHTGDSIVVAPSQTLTDRE-YQMLRAAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 +A+ G + +P SR+ +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALKVNGGCNVQYALNPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321 Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 88/278 (31%), Gaps = 31/278 (11%) Query: 25 ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63 AL++AG + I+ V V+ K D G Sbjct: 580 ALQEAGVESIIINNNPETVSTDFDTGDKLYFEPLTTEDVLHVVIKEKADGVLVQFGGQTA 639 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T + A ++ + + Sbjct: 640 INLAEPLSKAGVKIYGTSFNAIDLAEDRERFAAMLDELGILQSEGRAATSVEAAKQIADE 699 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P + V+ + + L Q+ + + +L+++Y+ G E + Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVSNLKELEDYLRQAINISPEHPILVDKYLQGKECEVDAVS 759 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P + L+ ++++ + + +G RG+ Sbjct: 760 DGETVVIPGVMEHIERAG---VHSGDSLAVYPPQSLTLNEIRQIESITCRIAEKMGVRGL 816 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276 F+ V+ LE+N P ++ V+ P Sbjct: 817 INIQFVVVH--GWVYVLEVNPRASRTIPILSKVTNVPM 852 >gi|313202999|ref|YP_004041656.1| carbamoyL-phosphate synthase large subunit [Paludibacter propionicigenes WB4] gi|312442315|gb|ADQ78671.1| carbamoyl-phosphate synthase large subunit [Paludibacter propionicigenes WB4] Length = 1456 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G + I+ + V V+ +PD F Sbjct: 411 SGSQALKALKEEGIETVLINPNIATVQTSEGIADKVYFLPVTPEFVERVIEKERPDGVFL 470 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 G G I E + + + + + D+ Q +S V S Sbjct: 471 SFGGQTALNCGVALFKNKIFEKYGVRVLGTPVQSIIDTEDREIFNQKLSEIDVNYIKSEA 530 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + + + P +++ +G D + + + ++ + Q+L+E+ Sbjct: 531 VNDLDNALRAANELGYPVIVRAAYALGGMGSGFCDNDAEMIELV--TKAFAYSPQVLVEK 588 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G I V + + ++ + + Y +++ L Sbjct: 589 SLKGW-KEIEYEVVRDKYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNREYHKLREL 647 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 A + IG G + FDP S +E+N + ++ S + GY Sbjct: 648 AIRIIRHIGIVGECNVQYAFDPFSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 699 >gi|295101479|emb|CBK99024.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium prausnitzii L2-6] Length = 1083 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 81/302 (26%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL+ G + + D D V +L KPD Sbjct: 29 SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 L G G + ++ L+ I + D+ + + Sbjct: 89 NLGGQMGLNLSMELARSGYLDRTGIRLLACRPETIDRAEDRELFKETMEKLHQPIIPSEV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P +++P G + + + + Q+L+E+ Sbjct: 149 VETLEDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLRLSPIHQILVEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + Y+ ++ Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A +G G F P S +E+N P ++ S + GY ++ Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 77/250 (30%), Gaps = 10/250 (4%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 SV ++A KPD G L I T + + A ++ Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685 Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158 + ++ + + I P +++P +IV + + + + Sbjct: 686 RCNIPRAPGRTVFNLEEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745 Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218 + +L+++Y+ G E + D + + + + +S + Sbjct: 746 HVDMDHPVLLDKYIMGTECEVDAICDGENYLIPGIMEQVERTG---VHSGDSICVYPAQH 802 Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278 + + + + G+ + + KV+ +E+N + T P ++ Sbjct: 803 LTQAEIDTMVDYTGRFARELHVTGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856 Query: 279 AYAGYSFREL 288 G +L Sbjct: 857 KVTGVPMVDL 866 >gi|242790098|ref|XP_002481495.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Talaromyces stipitatus ATCC 10500] gi|218718083|gb|EED17503.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Talaromyces stipitatus ATCC 10500] Length = 696 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 13/216 (6%) Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 +G E+ + + A DK RSK+++++ GVP P Sbjct: 117 YGFLSENSEFAQKCANAGLVFIGPPWKAIEDMGDKSRSKKIMTAAGVPCVPGYHGTNQDP 176 Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169 + P +IK +KGG G+ +++ L + + + L+ + Sbjct: 177 LFLESEADKMQYPVLIKAVKGGGGKGMRIVRSKTEFQDQLRSAKMEALNSFGNDHMLVEK 236 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + V D + + K + LP + D++++ + Sbjct: 237 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPDSVRKDLWEKARA 296 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 A +G G +F+FD + +++E+N + Sbjct: 297 AALA----VGYEGAGTVEFIFDNDTGNFYFMEMNTR 328 >gi|301802065|emb|CBW34797.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae INV200] Length = 1058 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 85/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ +P G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + + Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + V + +S + P + + + + + C G Sbjct: 759 SDGKNVLIPGIVEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ KV+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860 >gi|256391600|ref|YP_003113164.1| carbamoyl-phosphate synthase, large subunit [Catenulispora acidiphila DSM 44928] gi|256357826|gb|ACU71323.1| carbamoyl-phosphate synthase, large subunit [Catenulispora acidiphila DSM 44928] Length = 1099 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L G +V ++ + V ++A +PD Sbjct: 29 SGTQACRVLRSEGLRVILVNSNPATIMTDPEVADATYVEPITPEFVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + V +LE + + I A D+ + K++V + G S++ Sbjct: 89 TLGGQTALNTAVALAENGVLEKYNVELIGANIAAIQSGEDREKFKRIVETIGAESARSVI 148 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + L P V++P G ++ + + + ++L+E Sbjct: 149 CHSMEDCLAGVEELGGYPVVVRPSFTMGGAGSGFAHNEEELRRIAGTGLALSPTTEVLLE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D + +F + + + + Sbjct: 209 ESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPSMTLTDREYQELRDI 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + G F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 GIAVIRAVGVDTGGCNIQFAVNPADGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 ARL 327 >gi|149002647|ref|ZP_01827579.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS69] gi|147759258|gb|EDK66251.1| carbamoyl phosphate synthase large subunit [Streptococcus pneumoniae SP14-BS69] Length = 352 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G +L++ G++V ++ D+ + +L PD Sbjct: 30 GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + +P + Sbjct: 90 LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + ++ + + Q LIE+ Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + S D + +F + + + ++ + Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G DP S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|78188156|ref|YP_378494.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium chlorochromatii CaD3] gi|78170355|gb|ABB27451.1| carbamoyl-phosphate synthase large subunit [Chlorobium chlorochromatii CaD3] Length = 492 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL++ G++V + D++ + V ++ +PD Sbjct: 29 SGTQACRALKEDGYRVILVNSNPATIMTDIEFADATYIEPITPAYVQKIIEREQPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V ILE + + + A + ++ + G+ + + Sbjct: 89 TMGGQTALNIAVSLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGVF 148 Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAREALEEIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGLNESPIGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 CLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IRIIREIGVETGGSNIQFAINPKDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|85708555|ref|ZP_01039621.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1] gi|85690089|gb|EAQ30092.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1] Length = 1107 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + + V ++A KPD Sbjct: 29 SGTQAIKALKEEGYRVVLVNSNPATIMTDPEFADATYVEPITPEIVAKIIAKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G +L + + A + ++ R ++ + G+ S Sbjct: 89 TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDKIGLESARSGV 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 D P +I+P G + + + + + ++LIE+ Sbjct: 149 ANTVDEARDVLERTGLPAIIRPSFTLGGTGGGIAYNKEEFDRIVREGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRADNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 IEVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 10/163 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +++P + ++ + + + + + + +L++QY D IE Sbjct: 741 AARIGYPVLLRPSFVLGGRAMEIVDSEAQLDDYINTAVTVSGESPVLVDQYLRDAIECDV 800 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + +S ++ + P + DI +E++R A +A+G Sbjct: 801 DALCDGKEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLSADIIEEMERQAEALARALG 857 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 RG+ F +V+ +E+N + T P +A G Sbjct: 858 VRGLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894 >gi|225028429|ref|ZP_03717621.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353] gi|224954273|gb|EEG35482.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353] Length = 1077 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 92/288 (31%), Gaps = 30/288 (10%) Query: 25 ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63 A ++ G++ + D+ + V ++ KPD A G Sbjct: 582 AFKEMGYETIIVNNNPETVSTDFDIADKLYFEPLTEEDVEHIVELEKPDGAVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + I T + + +A + P ++ + + + Sbjct: 642 IKLTEKLNKIGVPILGTSAENVDAAEDRELFDEILEQCCIPRPKGGTVFTKEEAIKTANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +I+P G+ + D+ I + + +LI++Y+ G+E+ + Sbjct: 702 IGYPVLIRPSYVLGGQGMQIAISDEDISEFMDVIQRYAQEHPILIDKYLMGVEVEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + + + + I K + L +A+ G+ Sbjct: 762 DGEEIVIPGIMQHVERAGIHSG---DSISVYPARDLSPKIKKVIGHYTKLLAKALHVIGL 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 F+ +V+ +E+N + T P ++ G +L Sbjct: 819 INIQFIV--YQDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATK 860 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57 G +L++ G V + D+ + ++ + PD Sbjct: 30 GTQACRSLKEEGIHVVLVNSNPATIMTDKDIADEVYIEPLTPEVIKKLILKVSPDSLLPT 89 Query: 58 LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G D +++ T + A ++ + + + Sbjct: 90 LGGQAALNIAMELDECGFLKEHKVKLIGTTGKTIRKAEDREEFKETMEKIGEPIAPSQIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P V++P G + ++ + + Q+L+E+ Sbjct: 150 TNVEDGLEYAQKIGYPVVLRPAYTLGGSGGGIADNEEEFVEIIQNGLRLSRVGQVLVEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + T I V + ++ + + Y+ ++ A Sbjct: 210 IAGW-KEIEYEVMRDGNGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRNSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G F +P + +E+N P ++ S + GY ++ Sbjct: 269 LNIIDELGVEGGCNVQFALNPDTFDYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|138895110|ref|YP_001125563.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus thermodenitrificans NG80-2] gi|196248308|ref|ZP_03147009.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp. G11MC16] gi|134266623|gb|ABO66818.1| Acetyl-CoA carboxylase [Geobacillus thermodenitrificans NG80-2] gi|196212033|gb|EDY06791.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp. G11MC16] Length = 450 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 2/143 (1%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P ++K GG +G+ + + + S Y++ + Sbjct: 151 IGYPVMLKASSGGGGIGMHIAHDEAELRQAFEGSQKRAASFFGDGTMYIEKYIERPRHIE 210 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242 L ++ P+ + + A A + IG Sbjct: 211 IQLLADGHGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVQAARYIGYAN 270 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265 +FL D ++LE+N + Sbjct: 271 AGTIEFLVDEQKN-FYFLEMNTR 292 >gi|183600125|ref|ZP_02961618.1| hypothetical protein PROSTU_03660 [Providencia stuartii ATCC 25827] gi|188022413|gb|EDU60453.1| hypothetical protein PROSTU_03660 [Providencia stuartii ATCC 25827] Length = 392 Score = 58.7 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 76/273 (27%), Gaps = 30/273 (10%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK A + G +V +D ++ ++ KPD + Sbjct: 24 GKEVAIECQRLGIEVIAVDRYDHAPAMHVAHRSYTVNMLDGEAIRQLVEKEKPDFIVPEI 83 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + + +P ++ L + + + + + + Sbjct: 84 EAIATKTLVELEQQGQKVVPSANAVYLTMNREGIRRLAAEELGLPT-SDYRFVETEADFV 142 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P ++KP+ S G V++ +Q + G + + + + Sbjct: 143 TAAKEIGFPCIVKPVMSSSGKGQSVMRGEQDLKAA---WHYSQEGGRTGQGRVIVEKMIH 199 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + + + P ++ + Q A A+ Sbjct: 200 FDFEITMLTINAVDGIHFCAPIGHR-QEKGDYRESWQPQQMSEKALENAQAAAAKIVTAL 258 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268 G G+ + ++ + E++ +P GM Sbjct: 259 GGYGLFGVELFVC--GDEIIFNEVSPRPHDTGM 289 >gi|296284017|ref|ZP_06862015.1| carbamoyl phosphate synthase large subunit [Citromicrobium bathyomarinum JL354] Length = 1106 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++A KPD Sbjct: 29 SGTQAIKALKEEGYRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G LE + + A + ++ R ++ + G+ S + Sbjct: 89 TMGGQTALNCALKLFESGALEKHGVQMIGADADAIDKAENRQRFREAMDKIGLESAASGV 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + L P +I+P G + + + + ++LIE+ Sbjct: 149 ARSVDQAFEVLERTGLPSIIRPSFTLGGTGGGIAYNKSEFERIVREGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ + Sbjct: 269 IAVLREIGVETGGSNVQFAVNPENGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 39.1 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 66/173 (38%), Gaps = 10/173 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +++P + V+ + + + + + +L++QY D IE Sbjct: 738 ARKIGYPVLLRPSYVLGGSAMQVVDSEAQLDDYIASAVKVSGESPVLVDQYLRDAIECDV 797 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D + V + + +S ++ + P + ++ +E++R + + + Sbjct: 798 DVLCDGTDIVVAGVMQHVEEAG---VHSGDSACTLPPYSLSAEVVEEIERQSEALARELK 854 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G+ + F +++ +E+N + T P +A G + + Sbjct: 855 VVGLMNAQFAV--KEGEIYLIEVNPRASRT----VPFVAKTIGQPIAKYAARI 901 >gi|210617103|ref|ZP_03291413.1| hypothetical protein CLONEX_03635 [Clostridium nexile DSM 1787] gi|210149492|gb|EEA80501.1| hypothetical protein CLONEX_03635 [Clostridium nexile DSM 1787] Length = 1074 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 33/303 (10%) Query: 18 SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56 SG AL + G+++ + DV + ++A +PD Sbjct: 29 SGTQACKALRNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 L G G + + +LE + + A D++ K+ + S G+ + S Sbjct: 89 NLGGQSGLNLCSELAEAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + P V++P G ++ + + + + Q+L+E+ Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G E + S + ++ + I ++ K +Q Sbjct: 209 SILGWEELELEVVRDSEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKRLQEK 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + ++ G + DP + + +EIN + T S + G+ L+ Sbjct: 268 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 322 Query: 291 WMV 293 M+ Sbjct: 323 AML 325 Score = 41.8 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 82/263 (31%), Gaps = 27/263 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL GF+ + D D V + KP G Sbjct: 581 ALRKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 640 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + ++I T ++ A D R +P + ++ Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFREMMEKLDIPMPESGMAVNVEEALEIAEK 700 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P G+ V+ +S+ + + +LI++++ Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMNAAVGVTPDRPILIDRFL---GHATECEA 757 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242 DA D T VP + S +S ++P+K + + + + + +G Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRRIAEEMHVKG 817 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265 + + + KV+ LE N + Sbjct: 818 LMNMQYAI--ENGKVYVLEANPR 838 >gi|114570688|ref|YP_757368.1| carbamoyl phosphate synthase large subunit [Maricaulis maris MCS10] gi|114341150|gb|ABI66430.1| carbamoyl-phosphate synthase large subunit [Maricaulis maris MCS10] Length = 1085 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + V V+ +PD Sbjct: 29 SGVQAVKALKAEGYRVILVNSNPATIMTDPELADATYIEPITPDMVAKVIEKERPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 + G + + +L+L + + + ++ R + + G+ S Sbjct: 89 TMGGQTALNCALELDKRGVLDLFGVEMIGAKADVIDKAENRERFRDAMDKIGLESPRSRT 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + I P +I+P G + + + D++L+E+ Sbjct: 149 VHSMAEAEAVMSEIGLPAIIRPSFTLGGTGGGIAYNVEEYRHICGTGLDASPVDEILVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SIVGWKEFEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 65/163 (39%), Gaps = 10/163 (6%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + P V++P + +I++ S + ++ + + LL+++Y D E+ Sbjct: 720 AEQLGFPLVLRPSYVLGGRAMEIIREMDSFERYIREAVNVSGKSPLLLDRYLTDADEIDV 779 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D + + + +S ++ + P + ++ E++ +AIG Sbjct: 780 DAICDGTDVWVAGVMQHIEEAG---VHSGDSACSLPPYNLSDEMIAELKAETVAMAKAIG 836 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282 +G+ F + ++F LE+N + T P +A G Sbjct: 837 VKGLMNVQFAV--KNGEIFVLEVNPRASRT----VPFVAKAIG 873 >gi|332289579|ref|YP_004420431.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium anatis UMN179] gi|330432475|gb|AEC17534.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium anatis UMN179] Length = 393 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 82/304 (26%), Gaps = 46/304 (15%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK L+ G +V +D ++ ++ KPD + Sbjct: 24 GKEVVIELQRLGVEVIAVDRYADAPAHQVAHRAYTISMLDGDALKKLIEKEKPDYIVPEV 83 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + + IP + L + + + + + Sbjct: 84 EAIATDTLVELEQQGYNVIPTAKAVKLTMNREGIRRLAAEELGLPT-SPFQFVDNFADFQ 142 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V+KP+ S G ++K + + G + Sbjct: 143 QAVEKIGLPCVVKPIMSSSGHGQSILKNREQLQQAWQY---------AQEGGRAGGERVI 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233 ++T + V S+ P + ++ Q +A Sbjct: 194 VEGFIRFDYEITLLTVRHRGGTSFLAPIGHVQVDGDYRESWQPQAMSEIALQKAQHIAEK 253 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284 A+G GI + +V + E++ +P GM +S F A G Sbjct: 254 ITGALGGYGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQDLSEFALHARAILGLP 311 Query: 285 FREL 288 ++ Sbjct: 312 IPQI 315 >gi|315498931|ref|YP_004087735.1| carbamoyl-phosphate synthase, large subunit [Asticcacaulis excentricus CB 48] gi|315416943|gb|ADU13584.1| carbamoyl-phosphate synthase, large subunit [Asticcacaulis excentricus CB 48] Length = 1098 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D D V ++A +PD Sbjct: 29 SGVQACKALRQEGYRIILVNSNPATIMTDPDVADATYIEPITPEFVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + +L + + + D+ + + + G+ S + Sbjct: 89 TMGGQTALNTALALENNGVLAKYNVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESAKSAV 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + + + L + P VI+P + G + + + + + ++LIE Sbjct: 149 AHSWEEAVEALKTIGGLPAVIRPSFTLAGTGGGIAYNQEEFRDIVTRGLDLSPTTEVLIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + Sbjct: 209 ESIVGWKEYEMEVVRDKADNCIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSA 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 SLAVLREIGVETGGSNVQFALNPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 39.9 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 8/168 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 H + P VI+P + +I+ D+ + + ++ + +LI+QY+ Sbjct: 720 AHEVGYPIVIRPSYVLGGRAMEIIRDDEQLTRYVREAVQVSGDSPVLIDQYLSAAIEVDA 779 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 S + + +S ++ + P + + KE++R +A+ Sbjct: 780 --DALSDETGVFVAGIMEHIEEAGVHSGDSACALPPFSLKPETVKELERQTIELAKALKV 837 Query: 241 RGISRSDF-LFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 +G+ F + +P + K++ LE+N + T P +A G Sbjct: 838 KGLMNVQFAILNPYTDPKIYVLEVNPRASRT----VPFVAKTLGKPLA 881 >gi|269121268|ref|YP_003309445.1| carbamoyl-phosphate synthase, large subunit [Sebaldella termitidis ATCC 33386] gi|268615146|gb|ACZ09514.1| carbamoyl-phosphate synthase, large subunit [Sebaldella termitidis ATCC 33386] Length = 1069 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 98/291 (33%), Gaps = 32/291 (10%) Query: 23 ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61 +AL+ G + I+ + V ++ KP+ G Sbjct: 580 IAALKKMGIESIIINNNPETVSTDFSTADKLYFEPLTAEDVLEIVEKEKPEGVILQFGGQ 639 Query: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 + + ++I T + A +K P ++ + + Sbjct: 640 TAIKLAGELTKKGIKIIGTSFEKIDEAEDREKFDKLTDRLKIKKPEGKAVWTAEEGVKTA 699 Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181 I P +++P G+ + + ++ L + + + +LI++Y++G E+ Sbjct: 700 EAIEYPVLVRPSYVLGGQGMEICYDECNLRKYLESAFYRDSENPVLIDKYLNGAEIEVDA 759 Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240 + D + P + S +S V P + + I K+V+ + + + + Sbjct: 760 ICDGEDILI----PSIMEHLERAGVHSGDSITVCPTQNVSEDIKKKVEEITKVLARELEI 815 Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 G+ F+ +++ +E+N + T P ++ G EL Sbjct: 816 LGMINIQFI--AYKEELYIIEVNPRSSRT----VPYVSKITGIPVIELATR 860 Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56 SG AL + G +V I+ + ++ ++A KPD Sbjct: 28 SGTQACEALREEGIEVVLINSNPATIMTDSKTADKIYIEPMNIQTIEKIIAREKPDSLLP 87 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + V+ LE + + I + D+ R + V Sbjct: 88 GMGGQTALNLAVELKDAGILEKYNVNIIGTSIESIKKGEDRELFRESMMKIGEPVIDSSI 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + D I P V++P G + + + LL+ + Q+L+E+ Sbjct: 148 VTNLEDGQDFAAKIGYPVVVRPAYTLGGSGGGIAGSPEELKDILLKGLQLSRVGQVLVEK 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G D I V + ++ + + Y+ ++ Sbjct: 208 SILGW-KEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVTAPSQTLSDKEYQMLRTS 266 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + IG G F +PLS + +EIN P ++ S + GY + Sbjct: 267 SIKIINEIGIVGGCNVQFALNPLSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVAA 322 Query: 291 WM 292 + Sbjct: 323 KL 324 >gi|170693817|ref|ZP_02884974.1| urea carboxylase [Burkholderia graminis C4D1M] gi|170141235|gb|EDT09406.1| urea carboxylase [Burkholderia graminis C4D1M] Length = 1200 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 16/179 (8%) Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P ++K GG +G+ V + + +++ + Sbjct: 150 IGYPVMLKSTAGGGGIGMRVCWNVDELSAHFDVVKRLGQNNFSDAGVFLEKYIERARHLE 209 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242 ++ + PA + + + A +A+ R Sbjct: 210 VQVFGDGHGDAIALGVRDCSVQRRNQKVLEETPAPCLPEGMPAALCDAAVKLAKAVSYRS 269 Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297 +F++D +++ ++LE+N + G+T ++ G +L+ WM+E A+ Sbjct: 270 AGTVEFVYDSAAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELAA 317 >gi|329910952|ref|ZP_08275415.1| Phosphoribosylglycinamide formyltransferase 2 [Oxalobacteraceae bacterium IMCC9480] gi|327546039|gb|EGF31115.1| Phosphoribosylglycinamide formyltransferase 2 [Oxalobacteraceae bacterium IMCC9480] Length = 404 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 78/283 (27%), Gaps = 25/283 (8%) Query: 19 GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58 GK AL+ G +V +D ++ ++A KPDL + Sbjct: 27 GKEVIIALQRLGVEVIAVDRYADAPGQQVAHRAHVINMADGDALAALIALEKPDLVVPEI 86 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + + + T + R Sbjct: 87 EAIATTRLMELEQAGDVTVIPTARAAWLTMNREGIRRLAAEELQLPTSPYRFADSKAELQ 146 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177 + I P +IKP+ S G + + +++ + +I + E Sbjct: 147 AACAEIGFPCIIKPVMSSSGKGQSKLDGPDEVAAAWDYAAAGSRVDAGRVIVEGFIDFEY 206 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 ++ SLD + ++ + P +P Q +A Sbjct: 207 EITLLTVRSLDEHGSVITSFCEPIGHIQVNGDYVESWQPHPMPSAALVNAQAIAKAVTDN 266 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280 +G RG+ + KV++ E++ +P + + Sbjct: 267 LGGRGLFGVELFV--KGDKVWFSEVSPRP--HDTGMVTMASQV 305 >gi|172038031|ref|YP_001804532.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171699485|gb|ACB52466.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 340 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 22/270 (8%) Query: 43 GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102 +A DLA + +++L+LL IPY + AL+ +K ++K +V S Sbjct: 75 IQWIAEQNIDLALPQM-FCIPGMTQYRSLLDLLNIPYLGNTAELMALTANKAKAKAIVRS 133 Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162 GV V L+ + + + PP VIKP +SLG+ ++K L+ + Sbjct: 134 MGVKVPYGELLRQGNTLN---LRPPVVIKPDNSDNSLGVTLVKTMDE-YEAGLKKAFEYA 189 Query: 163 GDQLLIEQYVDGIELTC----------------GVMGDASLDVTEIAVPKSDFYSYELKY 206 L+ E G E+ C + + + EL Y Sbjct: 190 DQVLVEEYIELGREVRCGTIVKNGELISLPLEEYAVNSKDHPIRNHEDKLKKDDAGELTY 249 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 ++ + + VQ +A HQA+GCR S DF DP + ++LE + Sbjct: 250 AAKDKKKAWIVDSNDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQAWFLEAGLYC 308 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296 +P S+ P MA G S ELL + +A Sbjct: 309 SFSPKSVIPMMAQAKGISLNELLEIAINEA 338 >gi|114328409|ref|YP_745566.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1] gi|114316583|gb|ABI62643.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1] Length = 1197 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 ++ I P +IK GG +G+ + + + + + Y++ Sbjct: 144 HEAAGEIGYPVMIKSTAGGGGIGLQLCRSADELGPLFETVRRLSESNFKDGGIYLEKYVA 203 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236 + + V L+ + PA P + A + Sbjct: 204 RARHIEVQIFGDGQGHVVALGERDCSLQRRNQKVVEETPAPNLPAATRAAMMDAAIRLGR 263 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +F++D + + ++LE+N + G+T G +L+ WM Sbjct: 264 HVAYESAGTVEFIYDDAADQFYFLEVNTRLQVEHGVTE--------QVTGV---DLVEWM 312 Query: 293 VEDAS 297 V A+ Sbjct: 313 VRQAA 317 >gi|295113097|emb|CBL31734.1| Carbamoylphosphate synthase large subunit (split gene in MJ) [Enterococcus sp. 7L76] Length = 637 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 156 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 215 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 216 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 275 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 276 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 335 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 336 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 392 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 393 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 437 >gi|227553521|ref|ZP_03983570.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis HH22] gi|227177348|gb|EEI58320.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis HH22] Length = 922 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ P G Sbjct: 441 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 500 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + ++I T L A + D + P + + Sbjct: 501 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 560 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ + + + + + +L++ Y+ G E + Sbjct: 561 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 620 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + +I + + C G Sbjct: 621 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 677 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ +V+ +E+N + T P ++ G ++ + Sbjct: 678 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 722 Score = 42.9 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 5/173 (2%) Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179 I P +++P G + ++ + + Q LIE+ + G + Sbjct: 20 FAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIE 79 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + S D + +F + + Y+ ++ + +A+ Sbjct: 80 YEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDASLKIIRALK 138 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 G DP S + +E+N P ++ S + GY +L + Sbjct: 139 IEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 187 >gi|167648241|ref|YP_001685904.1| carbamoyl phosphate synthase large subunit [Caulobacter sp. K31] gi|167350671|gb|ABZ73406.1| carbamoyl-phosphate synthase, large subunit [Caulobacter sp. K31] Length = 1105 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL G+++ + D D V ++A +PD Sbjct: 37 SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPDMVAKIIAKERPDALLP 96 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + L + + + D+ + + + G+ S Sbjct: 97 TMGGQTALNTALALEADGTLAKYGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPKSKA 156 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P +I+P + G + + + + + ++LIE+ Sbjct: 157 AHNMDEAREGLAFVGLPAIIRPSFTLAGTGGGIAYNLEEFEEIVERGLDLSPTTEVLIEE 216 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I + + + + Sbjct: 217 SVLGWKEYEMEVVRDTADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 276 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 277 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 332 Query: 291 WM 292 + Sbjct: 333 RL 334 Score = 39.9 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 62/182 (34%), Gaps = 9/182 (4%) Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173 I P+V++P G+ +I+ + + + + + +L++ Y+ Sbjct: 718 WDEARAKGDEIGFPFVMRPSYVLGGRGMEIIRDHEHLERYIANTGEISFEHPILLDHYLS 777 Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233 V +A + +S ++ + P + +E++R Sbjct: 778 -RATEVDVDALCDGTDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLSAATVEELKRQTVK 835 Query: 234 AHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 A+ RG+ F + + +++ LE+N + T P +A G + Sbjct: 836 MALALNVRGLMNVQFAIEEPHSDAPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAA 891 Query: 291 WM 292 + Sbjct: 892 KI 893 >gi|296879965|ref|ZP_06903936.1| carbamoyl phosphate synthase large subunit [Clostridium difficile NAP07] gi|296429031|gb|EFH14907.1| carbamoyl phosphate synthase large subunit [Clostridium difficile NAP07] Length = 734 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P V++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + + Y+ +++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|291523486|emb|CBK81779.1| carbamoyl-phosphate synthase large subunit [Coprococcus catus GD/7] Length = 1066 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 84/301 (27%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57 G +L++ G +V ++ + ++ +PD Sbjct: 30 GTQACRSLKEEGIEVVLVNSNPATIMTDKQIADKVYIEPLTTEVLKKIIKKEEPDSILPT 89 Query: 58 LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115 L G + L+E G + + + R + + + Sbjct: 90 LGGQAALNLAMELDESGFLVENRVRMIGTSSQTIKKAEDRLAFKETMEKIGEPCAASEVC 149 Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D P VI+P G + Q + + Q+L+E+Y Sbjct: 150 TTLQGCFDFAEKNGYPVVIRPAYTLGGSGGGIAHDAQQLHDIASNGLRLSRVGQVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + ++ + + Y+ ++ A Sbjct: 210 IGGW-KEIEYEVIRDSYGNCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 Q + G + +P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIQELDIHGGCNVQYALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 89/257 (34%), Gaps = 15/257 (5%) Query: 40 RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99 V ++ PD A G + + + +P + + D+ ++ Sbjct: 618 EDVENIVRLEHPDGAVVQFGGQ--TAIKLTQAIMKMGVPIYGTQAEDVDAAEDRELFDEI 675 Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157 + C +P + + + + + P +I+P G+ + D I + Sbjct: 676 LEKCKIPRPAGTTVFTTEEALKAANHLGYPVLIRPSYVLGGQGMQIAVNDGDIVEFMNII 735 Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217 + +LI++Y+ G E+ + D + P + S +S + PA Sbjct: 736 NQTVQEHPILIDKYLMGKEVEVDGVCDGKDVLI----PGIMEHIERAGIHSGDSISIYPA 791 Query: 218 KIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276 + D + +++ + + +G+ F+ +V+ +E+N + T P Sbjct: 792 QHLSDAVIDKIEDYTAKLAKGLHVKGLLNIQFIV--YQEEVYVIEVNPRSSRT----VPY 845 Query: 277 MAAYAGYSFRELLLWMV 293 ++ G ++ + Sbjct: 846 ISKVTGIPIVDIASKCI 862 >gi|255657544|ref|ZP_05402953.1| carbamoyl phosphate synthase large subunit [Clostridium difficile QCD-23m63] gi|296452783|ref|ZP_06894471.1| carbamoyl phosphate synthase large subunit [Clostridium difficile NAP08] gi|296258379|gb|EFH05286.1| carbamoyl phosphate synthase large subunit [Clostridium difficile NAP08] Length = 774 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P V++P G + + ++ + L + Q+L+E+ Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + + Y+ +++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|313904323|ref|ZP_07837701.1| carbamoyl-phosphate synthase, large subunit [Eubacterium cellulosolvens 6] gi|313470873|gb|EFR66197.1| carbamoyl-phosphate synthase, large subunit [Eubacterium cellulosolvens 6] Length = 1072 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFNV 57 G C +L++ G +V + D+ V ++ KPD Sbjct: 30 GTQCCRSLKEEGIEVVLLNSNPATIMTDGDIADRVYIEPLTVEVVQQLIIKEKPDSILPT 89 Query: 58 LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111 + G G + + L + + L + D+ K + V + Sbjct: 90 MGGQAGLNLAMELDDNGFLAEHNVRLIGTTALTIKKAEDRQMFKDTMEKIGEPVAASEVV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 I P V++P G + + + L + ++L+E+Y Sbjct: 150 HSIEHGQRFAEKIGYPVVLRPAYTLGGSGGGIAHNQEELVEILSNGLRLSRVHEVLVERY 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + ++ + + Y+ ++ A Sbjct: 210 IGGWKEIEYEVMRDGAGNVITVCNMENLDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G G + P S + +E+N P ++ S + GY ++ Sbjct: 269 LNIITELGITGGCNVQYALKPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 92/281 (32%), Gaps = 30/281 (10%) Query: 25 ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL---H-------GNFGED 65 A G++ I D D + L L P+ N++ H Sbjct: 582 AFAREGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENIVNVEHPDGAVVQFGGQTA 641 Query: 66 GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123 + L + +P + + D+ Q++ +P + + + Sbjct: 642 IKLTEALMKMGVPILGTSAEDVDAAEDRELFDQILRKTEIPRAAGRTVFTAEEGVKVANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 + P +++P G+ + D+ I + + + +L+++Y++G E+ + Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAINDEDITKYINVINRYTQDHPILVDKYLEGTEIEVDAVC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D + + + + + + +I K+++ A+ G+ Sbjct: 762 DGEDILIPGIMQHIERAGIHSG---DSISVYPAKDLTDEIKKKIEIDTKKLANALHVLGM 818 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 F+ +V+ +E+N + T P ++ G Sbjct: 819 INIQFIV--YKDEVYVIEVNPRSSRT----VPYISKVTGIP 853 >gi|158520138|ref|YP_001528008.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus oleovorans Hxd3] gi|158508964|gb|ABW65931.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus oleovorans Hxd3] Length = 1075 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 84/302 (27%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G+ V ++ + +V ++ +P Sbjct: 29 SGTQACKALKEEGYSVVLVNSNPATIMTDPEFADATYIEPVTPEAVAAIIEKERPCAILP 88 Query: 57 VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G G + + +E+ + A D R +P Sbjct: 89 TLGGQTGLNTAVAVAEMGVLEKFNVEMIGASLSAIKKAEDRDLFRKAMNNIGLRIPRSGI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I P +++P G V + + +Q++IE+ Sbjct: 149 ATSMDQVRAIADEIGLPLIVRPSFTLGGTGGGVAHTQAELDALSAGGLEASLINQVMIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + D I + + + + + Sbjct: 209 SVVGWKEYELEVMRDRADNVVIICSIENLDPMGVHTGESITVAPIQTLSDKEYQVMRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAIMREIGVDTGGSNVQFAVNPANGEMVVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 22/261 (8%), Positives = 73/261 (27%), Gaps = 10/261 (3%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ + V ++ K D G + I T + Sbjct: 611 DKLYFEPLTV---EDVLHIIDTEKCDGVIVQFGGQTPLNIAEALARAGAPIIGTSPESIR 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 + + P + + + P +++P + ++ Sbjct: 668 RSEDRKFFAAMLSKLGLLQPPNGTAVNVEEAAAIAQNLGYPVIVRPSFVLGGRAMKIVYT 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 + + + +L++++++ + V + + + + Sbjct: 728 PAELANFARHAIKASPKHPILVDKFLE-DAIELDVDAISDTTGHTVIGGIMEHIEEAGIH 786 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S ++ + P + + E+ R + G+ + ++ +E+N + Sbjct: 787 SGDSACVLPPHSVKPHVIDEIIRATKAMAAELKVVGLMNVQYAV--KGDTLYVIEVNPRA 844 Query: 267 GMTPVSIFPEMAAYAGYSFRE 287 T P ++ G + + Sbjct: 845 SRT----VPFVSKATGVALAK 861 >gi|20095102|ref|NP_614949.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] gi|22095503|sp|Q8TUT7|CARB2_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, C-terminal section; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|19888393|gb|AAM02879.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri AV19] Length = 542 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 93/285 (32%), Gaps = 26/285 (9%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++ G+K ++ + V ++ +P G Sbjct: 31 AIQEEGYKAIIVNNNPETVSTDYDTSDKLYFEPITLEDVLNIVEKERPIGVLTQFGGQTS 90 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + V + + T + D+ P + ++ Sbjct: 91 VNLTVPLAERGVRVLGTDPDDVDRLEDRDRFSKLLKKLGIPQPESGTANDPEEAVEVAED 150 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ ++ + + +++ + +LI+++++G + C + G Sbjct: 151 IGYPVLVRPSYVIGGRAMEIVYDEEDLRRYIEEAAKVSPEHPILIDRFIEG-GIECEIDG 209 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 + + +S ++ V P +P + V A + G+ Sbjct: 210 ARDEAGNVLIPGIMEHIEEAGVHSGDSACVVPPQTLPEHAQETVLEYAEDIAEGANVIGL 269 Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 F++DP +V+ +E N + T P ++ G ++ Sbjct: 270 INIQFVYDPEEDEVYVIEANPRASRT----VPFISKAVGIPLAKI 310 >gi|82705197|ref|XP_726870.1| carbamoyl phosphate synthetase II [Plasmodium yoelii yoelii str. 17XNL] gi|23482455|gb|EAA18435.1| carbamoyl phosphate synthetase II-related [Plasmodium yoelii yoelii] Length = 1192 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53 G S E + S C + K I D D S L + ++ Sbjct: 657 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 713 Query: 54 --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 G + + + I + + + + +K Sbjct: 714 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 773 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P M + + P +++P S + V+ + + L++++ + + Sbjct: 774 PKWNKFTKLSKAMQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 833 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++I ++++ + + + A+ + + + I ++ ++ Sbjct: 834 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 891 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++++ + + G F+ ++ +E N + FP ++ +F Sbjct: 892 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 945 Query: 286 RELLLWMV 293 +L ++ Sbjct: 946 IDLATRIL 953 >gi|188587054|ref|YP_001918599.1| carbamoyl-phosphate synthase large subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|226700935|sp|B2A170|CARB_NATTJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|179351741|gb|ACB86011.1| carbamoyl-phosphate synthase large subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1106 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G S L + G +V ++ + + + ++ +PD Sbjct: 30 GTQACSVLREEGIEVVLVNSNPATIMTDTNMADKVYLEPLEKDYIIKIIEKERPDGLIAT 89 Query: 58 LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 + G G + ++ +++ T + A D ++ +P + Sbjct: 90 MGGQVGLNLAMELVDSGILDKYEVDLLGTTMSSIKKAEDRDVFKTTMNDIGEPIPESKIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 D I P +++P G V + +Q + + +Q+L+E+ Sbjct: 150 STVDQAKDFAKNIGYPVIVRPAYTLGGTGGGVAQNEQQLSQIASNGIRSSLINQILVERC 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 V G I + + ++ + + ++ +++ A Sbjct: 210 VIGW-KEVEYEVMRDKKGNCITICNMENMDPVGVHTGDSIVAAPSQTLTNQEHQMLRQAA 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + G F DP S + +E+N P ++ S + GY + Sbjct: 269 LKIIGELQIEGGCNIQFALDPHSNDYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 96/296 (32%), Gaps = 33/296 (11%) Query: 18 SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56 S + AL+D G++ I+ V V+A KP Sbjct: 609 SVHSVM-ALKDLGYESLIINNNPETVSTDFNISDRLYFEPLFTEDVNSVIAQEKPQGVIT 667 Query: 57 VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116 G + + E+ T + A + DK P + + Sbjct: 668 QFGGQTAVNLARPLANDGAEVLGTSVSDMDRAENRDKFDQLLNKLGIDRPKGKTATSTKE 727 Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176 + + P V++P + V+ + + + + + +LI+Q++ G+E Sbjct: 728 AKEIADELGYPLVVRPSYVLGGRAMEVVYTPEDLETYMTWAVEVSPEYPVLIDQFLQGME 787 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAH 235 + + D + P + S +S + PAK +I ++ Sbjct: 788 IEIDAVCDGQDVII----PGIMEHIERAGVHSGDSMAMFPAKSLDEITRDKIVSYTEALA 843 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 + + +GI ++ + KV+ +E+N + T P ++ G ++ Sbjct: 844 KGLNIKGIINIQYVV--YNGKVYVIEVNPRASRT----VPFISKITGIPMVKIATK 893 >gi|310659729|ref|YP_003937450.1| carbamoyl-phosphate synthase large subunit [Clostridium sticklandii DSM 519] gi|308826507|emb|CBH22545.1| carbamoyl-phosphate synthase large subunit [Clostridium sticklandii] Length = 1067 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G +V I+ + + V ++ +PD Sbjct: 29 SGTQACQALKEEGIEVVLINSNPATIMTDAEAADKIYIEPITLDYVKKIIELERPDSLLP 88 Query: 57 VLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + + L G + + R + Sbjct: 89 GMGGQTALNMALELHDQGILDSYNIKIIGTSIDGIKQGEDRYLFKELMNRIGEPMIQSEI 148 Query: 115 R----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P +++P G + + + + L + S++ Q+LIE+ Sbjct: 149 FTELEAGINYASQIGYPVIVRPAYTLGGTGGGIAETEDQLRLIMKSGLSYSPVGQVLIEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + +I+V + + ++ + + Y+ ++ Sbjct: 209 SIKGW-KEIEYEVMRDANGNKISVCNMENFDPVGIHTGDSIVVAPSQTLSDKDYQMLRTS 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +AIG G F +P S + +EIN P ++ S + GY ++ Sbjct: 268 SLKIIEAIGIEGGCNVQFALNPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM 292 + Sbjct: 324 KI 325 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 93/293 (31%), Gaps = 34/293 (11%) Query: 22 CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60 C L G + I+ + V V+ KPD G Sbjct: 580 CVKVLRKMGIETIIINSNPETVSTDFSIADKLYFEPLSEEDVLSVIDKEKPDGVILQFGG 639 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118 + + IP + LS D+ + + + S + I + Sbjct: 640 Q--TAIKLADFISSKGIPIYGTSASQIDLSEDREKFDEFLESLDIKRPKGKAIFNLEDGI 697 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + + + P +++P G+ + + + L + + + +LI+QY+ G EL Sbjct: 698 KTANELGYPLLVRPSYVLGGQGMKICYAESELTEYLSNAFKKDDKNPVLIDQYIVGKELE 757 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238 + D + + + + T P + I +++ + A+ Sbjct: 758 VDAICDGDSVLLPGIMEHIERAGIHSG---DSMTVYPPQNVSSHIIEQITEVTRKIALAL 814 Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +G+ ++ +++ +E+N + T P ++ + EL Sbjct: 815 NVKGLINIQYI--AYEEQLYVIEVNPRASRT----VPYISKVSNVPIVELATR 861 >gi|309810682|ref|ZP_07704490.1| carbamoyl-phosphate synthase, large subunit [Dermacoccus sp. Ellin185] gi|308435313|gb|EFP59137.1| carbamoyl-phosphate synthase, large subunit [Dermacoccus sp. Ellin185] Length = 1102 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG L + G +V ++ + + V ++A +PD Sbjct: 29 SGTQACRVLREEGLRVILVNSNPATIMTDPETADVTYVEPITPEIVESIIAKERPDAVLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + +LE P + + A L D+ + K VV CG S + Sbjct: 89 TLGGQTALNTAIALHKNGVLEKYGCPLIGANVEAIELGEDREKFKGVVERCGAESAKSHI 148 Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P LG + + + ++L+E+ Sbjct: 149 CHTMDEVLAAADDLGYPVVVRPSFTMGGLGSGFAYDETDLRRMAGAGLQASPVTEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + ++D + +F + + + + Sbjct: 209 SILGWKEYELEVMRDNVDNVVVVCSIENFDPMGVHTGDSITVAPALTLTDREYQRMRDVG 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324 Query: 291 WM 292 M Sbjct: 325 KM 326 >gi|257464131|ref|ZP_05628513.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp. D12] gi|317061647|ref|ZP_07926132.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp. D12] gi|313687323|gb|EFS24158.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp. D12] Length = 1069 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 90/279 (32%), Gaps = 33/279 (11%) Query: 24 SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62 L+ G + I+ V + ++ KP+ G Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 ++I T + + A +K P + + Sbjct: 641 AIKLAKDLEKRNVKILGTGAEKIDEAEDREKFEEMMENLDIKRPKGRASWDVEHGIAIAK 700 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 + P +++P G+ + + ++ L S S + +LI++Y++GIEL + Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEINLIKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241 D + P + S +S + P + +++ + +A+ + Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYPGTEEQILEITTKIARALEVK 816 Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275 G+ F+ +++ +E+N P ++ +S P Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L+ G +V I+ + V V+ +PD Sbjct: 28 SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110 + G + + ILE I + I + D+ R + Sbjct: 88 GMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILKSHV 147 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + I P V++P G Q + LL+ S + Q+LIE+ Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229 + G + + + +S V P++ D Y+ ++R Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + IG G F P S + +EIN P ++ S + GY + Sbjct: 266 ASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321 Query: 290 LWM 292 + Sbjct: 322 TKL 324 >gi|110598072|ref|ZP_01386351.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans DSM 13031] gi|110340331|gb|EAT58825.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans DSM 13031] Length = 489 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 31/296 (10%) Query: 29 AGFKVSQIDVDRSVGLV----LAHLKPDLAFNVLHGNF---GEDGLVQAILELLEIPYTH 81 G V D+ ++ + L DL N+ G+F V LE P+T Sbjct: 31 EGHDVEMADIHKATAVQQVRSLIQQDFDLFINLCDGSFDSDCAGIEVVQTLEYFNAPFTG 90 Query: 82 SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG-GSSLG 140 + + + M+ P+ ++ ++ + P ++K S Sbjct: 91 ASSDFYDPTREDMKRVARSFGIDTPLHRFVVTEADIKEAAENLRFPLIVKHPNSYASIGM 150 Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVMGDASLDVTEIA 193 + + + + L+E++V+G E T + E Sbjct: 151 TKTSRTETPEAFKVEAERIVREFGEALVEEFVEGREFTVLVAENAEDAANPVAFPAVEFV 210 Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253 P+ + + + S D+ + ++ ++ + G R D D Sbjct: 211 FPEGESFKHFDLKWSDYEDMNCIPVEDPDLDRRLRTISAQLFTGLNGSGYGRCDIRMDGE 270 Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAG------YSFRE---LLLWMVEDASCLR 300 ++F LEIN G AG ++ + L ++ +A+ R Sbjct: 271 -GRLFMLEINPNCG------VFYSPDDAGSADFILLNYPDGHQEFLRLLREAATKR 319 >gi|42522430|ref|NP_967810.1| carbamoyl-phosphate synthase [Bdellovibrio bacteriovorus HD100] gi|39574962|emb|CAE78803.1| carbamoyl-phosphate synthase [Bdellovibrio bacteriovorus HD100] Length = 1064 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 35/313 (11%), Positives = 88/313 (28%), Gaps = 40/313 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G +V ++ + + + ++A PD Sbjct: 29 SGTQACKALMKEGLEVILVNSNPATIMTDPEIATRVYVEPLKVDYLEKIIAKEMPDAVIP 88 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 L G + + +++ ++ + + R P Sbjct: 89 TLGGQTALNLALDLHAKGILQKYKVQLLGATPQVIKAGEDREIFRGLLDKIGAKYPKSHL 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + + P +++P G + + L+ + + ++L+E+ Sbjct: 149 IRTYEHGLQIADELGYPMILRPNYTLGGGGGGIAYSPEEYKKMLVTALHESPTSEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + + + Sbjct: 209 SILGWKEYELEVMRDHKGTFVVVCSIENLDPCGVHTGDSITVAPQQTLSDREYQSMRDEA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279 + ++ G + F P +++ +E+N P ++ S ++AA Sbjct: 269 CKIINEVGIETGGANIQFAVHPTTKERVVIEMN--PRVSRSSALASKATGFPIAKIAALL 326 Query: 280 YAGYSFRELLLWM 292 GYS EL + Sbjct: 327 AIGYSLDELQNDI 339 Score = 39.5 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 7/163 (4%) Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185 P + +P + VI+ + + + + ++ + L V Sbjct: 698 YPMICRPSYVLGGRRMEVIENTEELLSYFQRHKDYISPEKPCLMDQFLAGALEVDVD-LV 756 Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245 + + + +S + + P ++ + + ++ L+ IG I Sbjct: 757 RGEDWVVVGGIVEHIEAAGVHSGDSMGVLPPHRLKPETCERIEDLSKQLANRIGV--IGH 814 Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288 + + V+ LE N + + S P +A G +L Sbjct: 815 LNLQLAVKNDVVYMLEANPR---SSRS-VPFVAKATGIPLIDL 853 >gi|294011425|ref|YP_003544885.1| carbamoyl-phosphate synthase large chain [Sphingobium japonicum UT26S] gi|292674755|dbj|BAI96273.1| carbamoyl-phosphate synthase large chain [Sphingobium japonicum UT26S] Length = 1111 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + V ++ +PD Sbjct: 29 SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + A + D+++ + + G+ S + Sbjct: 89 TMGGQTALNTALALFNDGTLDKYGVKMIGADAAAIDKAEDRLKFRDAMDKIGLESARSRI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P +I+P G V + + + + ++LIE+ Sbjct: 149 AHTMEEALEALEFTGLPSIIRPSFTLGGTGGGVAYNKEEFKRIVAEGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 42.6 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + I P +++P + ++ + + + + +LI+QY D +E+ Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAVEVDV 799 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + +S ++ + P + I E++R A + +A+ Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSDGIIAEIERQADVLARALS 856 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 RG+ F V+ +E+N + T P +A G ++ Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902 >gi|50552496|ref|XP_503658.1| YALI0E07271p [Yarrowia lipolytica] gi|49649527|emb|CAG79240.1| YALI0E07271p [Yarrowia lipolytica] Length = 1820 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 1/144 (0%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P +IK GG +G+ + K + + +++ Sbjct: 765 AEKLEYPLMIKSTAGGGGIGLQKVDKPEDLKRAFETVKHQGKSFFGDDGVFMERFVENAR 824 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239 + L + L+ + P P + + + + + + + Sbjct: 825 HVEVQILGDGKGNALAIGERDCSLQRRNQKVVEETPAPNFPAETRTRMMKASEMLAKNLN 884 Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263 RG +F+FD + ++LE+N Sbjct: 885 YRGAGTVEFIFDEKRNEFYFLEVN 908 >gi|294628330|ref|ZP_06706890.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. e14] gi|292831663|gb|EFF90012.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. e14] Length = 1102 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 85/308 (27%), Gaps = 37/308 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L G +V ++ + V ++A +PD Sbjct: 29 SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 L G + + LE + + + A D+ + K VV + Sbjct: 89 TLGGQTALNTAISLHDNGVLEKYGVELIGANVEAIHKGEDRDQFKLVVEEVRKKIGHGES 148 Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164 + + P V++P G ++ + + + Sbjct: 149 ARSVICHTMDDVLQGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGTGLTLSPTT 208 Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224 ++L+E+ + G + + D + +F + + + Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268 Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284 + + G F DP +V +E+N P ++ S + G+ Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVDPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324 Query: 285 FRELLLWM 292 ++ + Sbjct: 325 IAKIAAKL 332 >gi|323477569|gb|ADX82807.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus HVE10/4] Length = 1051 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++++ ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEENLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ AV + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|323474829|gb|ADX85435.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus REY15A] Length = 1051 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 34/297 (11%) Query: 18 SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56 SG AL++ G + ++ D+ +V V+ +PD Sbjct: 27 SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86 Query: 57 VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 G + V +++ T + ALS +K R + ++ VP S Sbjct: 87 GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P +++ G +V ++++ ++ ++ S ++ ++LIE+ Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEENLKKNIRRALSQSYIGEVLIEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229 Y+ AV + + ST V P + ++ + R Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 ++I G F +P + + +E N P M+ S + GY Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317 >gi|121713104|ref|XP_001274163.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus clavatus NRRL 1] gi|119402316|gb|EAW12737.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative [Aspergillus clavatus NRRL 1] Length = 712 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 13/238 (5%) Query: 37 DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96 +D + +A + A + +G E+ + + A DK +S Sbjct: 93 YLDGDRIIEIAKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQS 152 Query: 97 KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152 K+++++ GVP P + ++ I P +IK +KGG G+ + Sbjct: 153 KKIMTAAGVPCVPGYHGSNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIASSKAEFQA 212 Query: 153 DLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207 L +S+ L+ + + V D + + K Sbjct: 213 QLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL 272 Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + LP DI+ + + A +G G +F+FD + + F++E+N + Sbjct: 273 EESPAPHLPDVTRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326 >gi|21325531|dbj|BAC00153.1| Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Corynebacterium glutamicum ATCC 13032] Length = 398 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%) Query: 19 GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58 GK A A + G +V +D +D + + L +PD + Sbjct: 17 GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 76 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 ++ + L I T + + Sbjct: 77 EALATDELVKIEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFEEFS 136 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIE 176 + + P V+KP+ S G V++ + + S ++++E +V+ Sbjct: 137 AAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVEFDY 196 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + T + P ++ + + +A Sbjct: 197 EITLLTVRSIDPTTSKPATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSVAARITN 256 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 A+G RG+ + V++ E++ +P Sbjct: 257 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 284 >gi|19553952|ref|NP_601954.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium glutamicum ATCC 13032] gi|62391595|ref|YP_226997.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium glutamicum ATCC 13032] gi|145296758|ref|YP_001139579.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium glutamicum R] gi|172044397|sp|A4QHG1|PURT_CORGB RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2 gi|172045811|sp|Q8NM23|PURT_CORGL RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2 gi|41326937|emb|CAF20781.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140846678|dbj|BAF55677.1| hypothetical protein [Corynebacterium glutamicum R] Length = 408 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%) Query: 19 GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58 GK A A + G +V +D +D + + L +PD + Sbjct: 27 GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 86 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 ++ + L I T + + Sbjct: 87 EALATDELVKIEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFEEFS 146 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIE 176 + + P V+KP+ S G V++ + + S ++++E +V+ Sbjct: 147 AAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVEFDY 206 Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236 + + T + P ++ + + +A Sbjct: 207 EITLLTVRSIDPTTSKPATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSVAARITN 266 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 A+G RG+ + V++ E++ +P Sbjct: 267 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 294 >gi|332885232|gb|EGK05483.1| carbamoyl-phosphate synthase, large subunit [Dysgonomonas mossii DSM 22836] Length = 1074 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G + I+ + V V+ KPD Sbjct: 29 SGSQALKALKEEGIETVLINPNIATVQTSEGSADKIYFLPITPYFVEKVIKKEKPDGILL 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 G G + ILE + + + A + D+ + + V + Sbjct: 89 AFGGQTALNCGVQLFQEGILEKYNLRVLGTPVQAIMDTEDRELFVKKLDQIDVKTIKSHA 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + + P +I+ LG +Q + L ++++ Q+L+E+ Sbjct: 149 VGTIEDAVKAAKDLGYPIIIRAAYALGGLGSGFCDNEQELRA--LAEKAFSYSSQILVEK 206 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + V + + ++ + + D + +++ L Sbjct: 207 SLKGW-KEIEYEVVRDKYGNCMTVCNMENFDPLGIHTGESIVVAPSQTLTNDEFHKLREL 265 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + + IG G F FD S +E+N + ++ S + GY Sbjct: 266 SIRIVKHIGIVGECNVQFAFDTESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 317 >gi|294341844|emb|CAZ90273.1| Urea carboxylase [Thiomonas sp. 3As] Length = 1209 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ +I + + + + Y++ Sbjct: 147 ARRIGFPVMLKSTAGGGGIGMQLIWSEDQLDAAYARVDRLARANFKEAGIYLEKYVQAAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + V ++ + PA D + + A Q + Sbjct: 207 HIEVQVFGDGAGGVVHLGERDCSVQRRNQKVIEETPAPHLADAVRTALCDTAVRLAQGVQ 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295 R +F+ D S ++LE+N + G S +L+ WMV Sbjct: 267 YRNAGTVEFVLDAESGAFYFLEVNT-----------RLQVEHGVSEEVSGVDLVEWMVRL 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|116515031|ref|YP_802660.1| hypothetical protein BCc_090 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256885|gb|ABJ90567.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 1072 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56 SG AL++ G++V I D + + + KP+ Sbjct: 29 SGAQACKALKEEGYQVILINSNPATIMTDPEIADFTYIEPINTKIILKIIKKEKPNAILP 88 Query: 57 VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114 + G + L + G + + RS S + + + Sbjct: 89 TMGGQTALNCTLQLYKKGILDKYNIEIIGTTIKCIKKAENRSLFEKSMKKIKLKTAKCGI 148 Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ + I P +++P G + + + + +LLI++ Sbjct: 149 AHNIEEANSIIKSIGFPCIVRPSFTMGGSGGGIAYNKEDFQNICILGLESSPISELLIDE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + + + + + K Sbjct: 209 SLIGWKEYELEVITDQSGNFIVVCTIENIDPMGIHTGDSITVAPAQTLSDKEYQKMRNAA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + K+ +E+N P ++ S + G+ ++ Sbjct: 269 INILKEIGVTNGGSNVQFAINPKNGKMIVIEMN--PRVSRSS--ALASKATGFPIAKIST 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 37.2 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 94/286 (32%), Gaps = 24/286 (8%) Query: 9 SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68 S++ ++S + F+ + + ++ KP G Sbjct: 611 STDYDIS-----------DRLYFEPISL---EEILEIVRIEKPLGIVIQFGGQTPLKLAK 656 Query: 69 QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128 E ++I T + A + K + P + + + I P Sbjct: 657 YFKKEGIKILGTQPKFIDQAENRKKFQKIIHKLKIKQPKNDIATNIKEALIKSNYIGYPI 716 Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187 +++P + +IK D+ + L + + +LI+QY+D E+ + D Sbjct: 717 IVRPSYVLGGREMKIIKNDKELIKYFLNLNIQSKKKTILIDQYLDNATEIDVDAVCDLKN 776 Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247 + + ++ + + + K++++ + + +G+ Sbjct: 777 VFIGGIMEHVEPAGIHSG---DSACTLPVYTVSQQLLKKIKKQTKILSIKLNVQGLINIQ 833 Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 F ++K++ LE N + T P ++ ++ + ++ Sbjct: 834 FAI--KNKKLYILEANPRASRT----IPFISKAIQVPLAKVAMRVI 873 >gi|116670809|ref|YP_831742.1| carbamoyl phosphate synthase large subunit [Arthrobacter sp. FB24] gi|166989831|sp|A0JX72|CARB_ARTS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116610918|gb|ABK03642.1| carbamoyl-phosphate synthase large subunit [Arthrobacter sp. FB24] Length = 1099 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +LE + + I A L D+ + K VV CG S Sbjct: 89 TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 I + + + P V++P LG + + + + Q ++ ++L+E+ Sbjct: 149 IHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYTEDDLRRIVGQGLQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + + Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQRLRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|330832726|ref|YP_004401551.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3] gi|329306949|gb|AEB81365.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3] Length = 1081 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 601 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPKGVIVQFGGQT 660 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 661 AINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAAR 720 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 721 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAI 780 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ + + C G Sbjct: 781 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIG 837 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 838 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 52 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 111 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G D S K + +E+N P ++ S + GY +L Sbjct: 291 LSIIRALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346 Query: 292 M 292 + Sbjct: 347 I 347 >gi|255102803|ref|ZP_05331780.1| carbamoyl phosphate synthase large subunit [Clostridium difficile QCD-63q42] Length = 774 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 100/318 (31%), Gaps = 40/318 (12%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G +V ++ + + ++ KPD Sbjct: 29 SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKEKPDSLLA 88 Query: 57 VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110 + G G + V+ +++ T + D R + V V Sbjct: 89 GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + ++ + I P V++P G + ++ + L + Q+L+E+ Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + ++ + + + Y+ +++ Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + AI +G +P S + +EIN P ++ S + GY ++ Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323 Query: 291 WM--------VEDASCLR 300 + +E+A + Sbjct: 324 KIALGYTLDEIENAVTKK 341 >gi|223934161|ref|ZP_03626102.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis 89/1591] gi|302023698|ref|ZP_07248909.1| carbamoyl phosphate synthase large subunit [Streptococcus suis 05HAS68] gi|223897167|gb|EEF63587.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis 89/1591] Length = 1059 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%) Query: 24 SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62 A++ AG++ ++ + V V+ KP G Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPKGVIVQFGGQT 638 Query: 63 GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122 + + I T L A D P + +++ Sbjct: 639 AINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAAR 698 Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182 I P +++P + +++ ++ + + + + +L++ Y+ G E + Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAI 758 Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242 D + + + +S + P + ++ + + C G Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIG 815 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 + F+ V+ +E+N + T P ++ ++ ++ Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57 G AL++ G+ V ++ D+ + +L +PD Sbjct: 30 GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + ++ + E+ T + A D + + +P + Sbjct: 90 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + Q LIE+ Sbjct: 150 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + + + D + +F + ++ + ++ + Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+ G D S K + +E+N P ++ S + GY +L Sbjct: 269 LSIIRALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|68074917|ref|XP_679375.1| carbamoyl phosphate synthetase [Plasmodium berghei strain ANKA] gi|56500108|emb|CAH93932.1| carbamoyl phosphate synthetase, putative [Plasmodium berghei] Length = 2151 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 7 GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53 G S E + S C + K I D D S L + ++ Sbjct: 1629 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1685 Query: 54 --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105 G + + + I + + + + +K Sbjct: 1686 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 1745 Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 P + + + P +++P S + V+ + + L++++ + + Sbjct: 1746 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 1805 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 ++I ++++ + + + A+ + + + I ++ ++ Sbjct: 1806 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1863 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285 ++++++ + + G F+ ++ +E N + FP ++ +F Sbjct: 1864 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1917 Query: 286 RELLLWMV 293 +L ++ Sbjct: 1918 IDLATRIL 1925 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 30/295 (10%), Positives = 84/295 (28%), Gaps = 32/295 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD--------------------RSVGLVLAHLKPDLAFNV 57 SG +L++ G V + V ++ KPD Sbjct: 630 SGTQAIKSLKECGIYVILVPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILCT 689 Query: 58 LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSI 111 G + +L+ + + + ++ ++ + + + S Sbjct: 690 FGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGSA 749 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ + I P +++ L I ++ + + +++ I++ Sbjct: 750 KNVEEAVEVANKIGYPILVRTTFSLGGLNSSFINNEEELVEK-CKEIFLQTDNEIFIDKS 808 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G IA+ + ++ + + Y + + +A Sbjct: 809 LKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREIA 867 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 + G F +P + + +E+N + ++ S + GY Sbjct: 868 LKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 918 >gi|284929083|ref|YP_003421605.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A] gi|284809542|gb|ADB95247.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A] Length = 1081 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 98/303 (32%), Gaps = 32/303 (10%) Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56 SG AL + G++V + D + S V ++A +PD Sbjct: 29 SGTQACKALREEGYEVILVNSNPASIMTDPEMSDRTYIEPLVPDIVEKIIAKERPDALLA 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + +LE + + + A + D+ K+ + S GVPVCPS + Sbjct: 89 TMGGQTALNIAVSLAKSGVLEKYNVELIGARLSAIEKAEDRELFKKAMDSIGVPVCPSGI 148 Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 N + I+ P +I+P G + + + + Q+L+E Sbjct: 149 ANTLKEAREIAINIGSYPLIIRPAFTLGGTGGGIAYHQEEFEDIVQTGLDASPMSQILVE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + D I +F + + + K Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQKLRDY 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289 + + G + F +P + +E+N P ++ S + G+ + Sbjct: 269 SKSIIREIGVETGGANIQFSVNPANGDTIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324 Query: 290 LWM 292 + Sbjct: 325 AKL 327 Score = 42.6 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 30/298 (10%), Positives = 88/298 (29%), Gaps = 36/298 (12%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF- 62 AL G++ + D D + ++ P+ G Sbjct: 587 ALSQDGYETIMVNSNPETVSTDYDTSDRLYFEPLTREDILNIIEVENPEGVIIQFGGQTP 646 Query: 63 -GEDGLVQAILELLEIPYTHSGI----LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117 +Q + + L+ D+ R ++++ + P + F Sbjct: 647 LKLAVPLQEYFDNPSSCVQTKIWGTPPDSIDLAEDRERFEKILCDLQIKKPPGGIARSFE 706 Query: 118 MD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175 I P V++P + ++ D+ + + + +LI+++++ Sbjct: 707 QSLSIASNIGYPVVVRPSYVLGGRAMRIVYSDKELKHYMDYAIQVEPDHPILIDKFLE-D 765 Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235 + V + + +S ++ + + + +++ Sbjct: 766 AVEVDVDALCDKTGMVVIGGIMEHIEQAGVHSGDSACSIPFTTLSEKVLDIIRKWTSQLA 825 Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293 ++ G+ + +V+ LE N + T P ++ G ++ ++ Sbjct: 826 NSLQVIGLINIQYAVQQE--EVYILEANPRASRT----VPYVSKATGRPLAKIASLVI 877 >gi|257464968|ref|ZP_05629339.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor 202] gi|257450628|gb|EEV24671.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor 202] Length = 393 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 84/304 (27%), Gaps = 46/304 (15%) Query: 19 GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58 GK L+ G +V +D + + ++ KPD + Sbjct: 24 GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEQEKPDFIVPEV 83 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 + IP + L + + + + + Sbjct: 84 EAIATATLVELEQEGYCVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEDFQ 142 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178 + I P V+KP+ S G +IK + I D G + Sbjct: 143 SAIKEIGIPCVVKPIMSSSGHGQSIIKSAEQIQQAW---------DYSQEGGRAGGGRVI 193 Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233 ++T++ V S+ P + ++ Q +A Sbjct: 194 VEGFIQFDYEITQLTVRHIHGTSFLAPIGHIQIDGDYRESWQPQVMSEKAQQKAQEVAEK 253 Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284 A+G RGI + ++ + E++ +P GM +S F A G Sbjct: 254 ITSALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMISQELSQFALHARAILGLP 311 Query: 285 FREL 288 E+ Sbjct: 312 IPEI 315 >gi|257460269|ref|ZP_05625372.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis RM3268] gi|257442334|gb|EEV17474.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis RM3268] Length = 445 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 25/260 (9%) Query: 52 DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110 D F +G E I I + + A L DK ++KQV+ G+PV P Sbjct: 78 DAIFPG-YGFLSESQNFVEICAKHGIKFIGPSVEAMTLMSDKSKAKQVMMRAGIPVVPGS 136 Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167 I I P +IK GG G+ V+++++ I + S Sbjct: 137 DGAIASVEEARKLAAEIGYPVIIKAAAGGGGRGMRVVEREEDIEKLFWSAESEAMSAFGD 196 Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226 Y++ + L V ++ PA I + K Sbjct: 197 GTMYMEKYITNPRHIEVQVLGDEHGHVVHIGERDCSMQRRHQKLIEESPAVILDEPTRKS 256 Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280 + A A +AIG +FL+D +K +++E+N + + Sbjct: 257 LHETAVRAAKAIGYASAGTFEFLYDGKDKKFYFIEMNTR----------LQVEHTVSEMR 306 Query: 281 AGYSFRELLLWMVEDASCLR 300 +G +L+ WM+ A + Sbjct: 307 SGL---DLIEWMIRIAQGEK 323 >gi|300778662|ref|ZP_07088520.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Chryseobacterium gleum ATCC 35910] gi|300504172|gb|EFK35312.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Chryseobacterium gleum ATCC 35910] Length = 1060 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 84/279 (30%), Gaps = 31/279 (11%) Query: 25 ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63 A+++ G++ I+ + V ++ KP G Sbjct: 582 AIKEMGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 641 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + ++I T L A + DK P + + + Sbjct: 642 INLADKLASHGVQILGTSLEDLDRAENRDKFEKALQELGIPQPKGRTSTSKEEAIKIANE 701 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +++P + ++ + + + + + +L+++Y+ G E+ + Sbjct: 702 IGYPVLVRPSYVLGGRAMEIVYAESELAHYMEHAVDASPEHPVLVDKYMVGKEIEVDAIC 761 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243 D V + + +S + P I + + + G+ Sbjct: 762 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNISQIEIDTLVDYTKRLAKGLNVIGL 818 Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 ++ V+ +E+N P ++ ++ P Sbjct: 819 MNIQYVLFE--GNVYVIEVNPRSSRTVPFLSKITDVPMA 855 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57 G +L++ G+KV I+ + + V ++ +PD Sbjct: 30 GTQACLSLKEEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111 L G G + V+ +E+ T + A D R + VP + Sbjct: 90 LGGQTGLNMAVELEKSGILEECKVEVLGTKLSAINRAEDRDLFRELMRELNEPVPESDIV 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + I P +++P G + + + + Q LIE+ Sbjct: 150 NTVEGALAFADEIGYPVIVRPAFTMGGTGGGIASTEAELKEIAELGLKHSPVTQCLIEKS 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G + I V + ++ + + Y+ ++ + Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 +A+G G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324 Query: 292 M 292 + Sbjct: 325 I 325 >gi|192360305|ref|YP_001981735.1| urea amidolyase [Cellvibrio japonicus Ueda107] gi|190686470|gb|ACE84148.1| urea amidolyase [Cellvibrio japonicus Ueda107] Length = 1212 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 93/313 (29%), Gaps = 49/313 (15%) Query: 22 CASALEDAGFKVSQI--DVDRSVGLVLA---------------HLKPDLAFNVL------ 58 A L+ G + + D DR+ V A +LK DL Sbjct: 17 IAKTLKKMGIESVAVYSDADRNSAHVTACDKAICLGGNTAAESYLKVDLILAAAKETGAQ 76 Query: 59 -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110 +G E+ E I + K S+++ GVP+ P Sbjct: 77 AIIPGYGFLSENANFCEKCEAEGIAFCGPTPEQIRQFGLKHTSRELAEQAGVPLTPGTGL 136 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P ++K GG +G+ + + Sbjct: 137 LGSVEEATHAAATLGYPVMLKSTAGGGGIGLTRCNSEAELVNAYESVKRLGQNFFSDSGV 196 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229 +++ + + V L+ + PA P +++ Sbjct: 197 FLERFVDNARHVEVQIFGDGKGNVLALGERDCSLQRRNQKVVEETPAPNLPAATREQLLA 256 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284 + + + R ++++DP + ++LE+N P +T A G Sbjct: 257 ASVSLGKMVNYRSAGTIEYIYDPARDEFYFLEVNTRLQVEHP-ITE--------ACTGV- 306 Query: 285 FRELLLWMVEDAS 297 +L+ WM+ A+ Sbjct: 307 --DLVEWMILTAA 317 >gi|158426026|ref|YP_001527318.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571] gi|158332915|dbj|BAF90400.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571] Length = 1176 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 18/183 (9%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 IS P ++K GG +G+ + Q + + Y++ Sbjct: 147 AEAISYPVMLKSTAGGGGIGMQLCADAQELAAAFERVQRTARASFGDARVYLERFVAEAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V L+ + PA + D + + A +++G Sbjct: 207 HVEVQIFGNGQGRVVALGERDCSLQRRNQKVIEETPAPLLPDAVRTRLHAAAVALGESVG 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294 +F++DP + ++LE+N P +T A G +L+ WMV Sbjct: 267 YASAGTVEFIYDPAREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314 Query: 295 DAS 297 A+ Sbjct: 315 QAA 317 >gi|282880013|ref|ZP_06288735.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS 5C-B1] gi|281306127|gb|EFA98165.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS 5C-B1] Length = 285 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 18/286 (6%) Query: 14 VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73 VS + AL + ++ L+ L D ++ DG V+ + Sbjct: 15 VSKRNTLFITEALGKENVRFHKL----QNPDDLSELGIDNDDILI--AETRDGFVRYAIS 68 Query: 74 LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133 +L T L+ +K K + G+ I + ++ +KP+ Sbjct: 69 MLGCRNTVESDRTIVLTQNKEYVKHELQRYGILSPCKITIEEVKDGCKY------FVKPV 122 Query: 134 KGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192 G S + V QS + G +IE+++DG E T ++ T Sbjct: 123 FGEDSNFVGVDSVCQSKEEAWRKADEIQKAGFTPMIEEFIDGEEYTVALIRKEGKIETY- 181 Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252 P + + E++ +A A + +GC+ R DF D Sbjct: 182 --PIKVHLFTPWNIMTHTAKFSEEEICEAVNDAELEDIAKKAFEVVGCKHYMRIDFRRDS 239 Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDAS 297 + + ++ N+ PG+ P F + + S+ ++L ++E A+ Sbjct: 240 Q-GRYYLIDFNLFPGLGPTDHFAKCINLHLNISYHDILTKIIETAT 284 >gi|255036238|ref|YP_003086859.1| carbamoyl phosphate synthase large subunit [Dyadobacter fermentans DSM 18053] gi|254948994|gb|ACT93694.1| carbamoyl-phosphate synthase, large subunit [Dyadobacter fermentans DSM 18053] Length = 947 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 93/318 (29%), Gaps = 45/318 (14%) Query: 18 SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLK-----P 51 SG A +L + G +V I D + + +L K Sbjct: 29 SGSQAARSLREEGIEVVLINSNPATIMTDPISADHVYLLPLEKKYIVEILEKHKAMGRPI 88 Query: 52 DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107 D + G + + + ++ I A + D+ + + + GV V Sbjct: 89 DAVLPTMGGQTALNLAIDCDKAGIWKKYDVDIIGVDIKAIETTEDREKFRLKMLELGVNV 148 Query: 108 CPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165 C + I P VI+P G + K++ L + + Sbjct: 149 CQGRTARSFLEGKEIAQEIGFPLVIRPSFTLGGTGGGFVDKEEDFDKALNYGLHASPVHE 208 Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225 +L+EQ V G + + S I +F + + + Sbjct: 209 VLVEQSVMGWKEYELELLRDSKGNFIIICSIENFDPMGVHTGDSITVAPAMTLPDTLYQQ 268 Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276 + + G F +P K+ +EIN P ++ S + Sbjct: 269 MRDLAIKMMNGIGKFAGGCNVQFSVNPADDKIIAIEIN--PRVSRSSALASKATGYPIAK 326 Query: 277 MAA--YAGYSFRELLLWM 292 +AA GY EL+ + Sbjct: 327 IAAKMAIGYDLDELINPI 344 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 90/295 (30%), Gaps = 32/295 (10%) Query: 20 KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58 +A ++AG++ + D D V ++ H KP+ L Sbjct: 590 HGVLAA-KEAGYETIMVNCNPETVSTDPDISDKLYFEPVFWEHVFDIIEHEKPEGVIVQL 648 Query: 59 HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118 G + ++I T L A + S P ++ + + Sbjct: 649 GGQTALKMAEKLEKYGIKIIGTDFHSLDWAEDRGRFSSLLEELGIPFPKFGTVRSSDAAV 708 Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-EL 177 + + P +++P + ++ ++ + +++ + +L++ +++G E Sbjct: 709 ELSRSLGFPLLVRPSYVLGGQSMKIVINEKELEQHVVKILHDIPDNNILLDHFLEGALEA 768 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237 + D + + + + P + D ++++ A Sbjct: 769 EADAICDGEDAYIIGVMEHIEPAGIHSG---DSHAALPPFDLTADEIRQIEEHTRKIALA 825 Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 + +G+ F V+ +E N + T P + + + Sbjct: 826 MNVKGLINVQFAV--KDGVVYVIEANPRASRT----VPFICKAYQEPYVNFATKL 874 >gi|149204195|ref|ZP_01881163.1| pyruvate carboxylase [Roseovarius sp. TM1035] gi|149142637|gb|EDM30682.1| pyruvate carboxylase [Roseovarius sp. TM1035] Length = 1167 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 1/146 (0%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG G+ I+ + + + + E Y++ + L Sbjct: 172 AKAIGYPLMLKASWGGGGRGMRPIEDESELEDKVREGRREAEAAFGNGEGYLEKMILRAR 231 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239 + L + ++ + PA + +E + + + Sbjct: 232 HVEVQILGDKHGNMYHLFERDCSVQRRNQKVVERAPAPYLSETQREEICQLGYKICKHVN 291 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265 +FL D + K +++E+N + Sbjct: 292 YECAGTVEFLMDMDTGKFYFIEVNPR 317 >gi|325972752|ref|YP_004248943.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy] gi|324027990|gb|ADY14749.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy] Length = 1069 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 109/314 (34%), Gaps = 42/314 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V + +PD Sbjct: 29 SGTQAVKALKEEGYEVILLNPNPATVMTTPSLADTVYLDPLKIEYVEQIFQRERPDAILT 88 Query: 57 VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G G + +LE + S I + L+ D+ KQVV S G+ S + Sbjct: 89 TMGGQSGLNLALELDKAGLLEQYGVEVIGSSITSIKLAEDRGAFKQVVQSLGLESAKSFV 148 Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V+ P +I+P +G + +Q P L + + + LIE+ Sbjct: 149 VHSLAEAQSLLQDFPYPRIIRPSYTLGGMGGSIANNEQEFPDLLCHALETSPTGEALIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + + +Y+ ++ Sbjct: 209 SLIGWKEFEMEVMRDKADNAIIVCSIENIDPMGVHTGDSITIAPI-QTLDDKLYQTMRNA 267 Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA 279 + +A+G G S F P + ++ +E+N P ++ S FP A Sbjct: 268 SIAILRAVGVDCGGSNVQFAVHPETARMVVIEMN--PRVSRSSALASKATCFPIARCSAK 325 Query: 280 -YAGYSFRELLLWM 292 GY+ E++ + Sbjct: 326 LAVGYTLDEVVNEI 339 Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273 P K I +++Q A A+ +G+ F ++ +E+N + T Sbjct: 789 FPPYKSSPQILQQMQEWAHKLAIALDTKGLMNIQF--AAKDGLLYLIEVNPRASRT---- 842 Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296 P ++ +G ++E A Sbjct: 843 VPFISKTSGVD-------LIETA 858 >gi|116512213|ref|YP_809429.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis subsp. cremoris SK11] gi|122940114|sp|Q02YG5|CARB_LACLS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|116107867|gb|ABJ73007.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis subsp. cremoris SK11] Length = 1064 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%) Query: 19 GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57 G AL++ G++V ++ + V +L +PD Sbjct: 30 GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89 Query: 58 LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111 L G G + ++ ILE L + + + A + D+ + + + Sbjct: 90 LGGQTGLNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIA 149 Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 ++ I P +++P G + ++ + + + Q LIE+ Sbjct: 150 TTVEEAINIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 + G I V + + ++ + + + Y+ ++ + Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268 Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 269 LNIIHALKIEGGCNVQLALDPNSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324 Query: 292 M 292 + Sbjct: 325 I 325 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 80/267 (29%), Gaps = 12/267 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V V+ +P G + ++I T L Sbjct: 606 DKLYFEPLTF---EDVMNVIDLEEPLGVIVQFGGQTAINLAEPLSKAGVKILGTQVEDLD 662 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A D P + + + + I P +I+P + +I Sbjct: 663 RAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVLIRPSFVLGGRAMEIINN 722 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 ++ + + ++ + +L++ Y+ G E + D + + + + Sbjct: 723 EKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVLLPGIMEHIERAG---VH 779 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S + P + I + + C G+ F+ +V+ +E+N + Sbjct: 780 SGDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMNIQFVIYEE--QVYVIEVNPRA 837 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293 T P ++ +L M+ Sbjct: 838 SRT----VPFLSKVTNIPMAQLATQMI 860 >gi|261855411|ref|YP_003262694.1| urea carboxylase [Halothiobacillus neapolitanus c2] gi|261835880|gb|ACX95647.1| urea carboxylase [Halothiobacillus neapolitanus c2] Length = 1208 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 I P ++K GG +G+ + + + + +++ Sbjct: 147 AERIGYPVMLKSTAGGGGIGMKLCWTADQLHEAYDSVERLSRSNFSQGGLFLEKYVEQAR 206 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239 + + V ++ + PA + + E+ A QA+ Sbjct: 207 HIEVQIFGDGKGQVVSLGERDCSVQRRNQKVIEETPAPGLDESLRTELWGAATRLGQAVN 266 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295 + +F++D + ++LE+N + G+T G +L+ WMV Sbjct: 267 YQSAGTVEFVYDVKNAAFYFLEVNTRLQVEHGVTE--------RVTGV---DLVEWMVRV 315 Query: 296 AS 297 A+ Sbjct: 316 AA 317 >gi|37520527|ref|NP_923904.1| urea amidolyase [Gloeobacter violaceus PCC 7421] gi|35211521|dbj|BAC88899.1| gll0958 [Gloeobacter violaceus PCC 7421] Length = 1202 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 16/188 (8%) Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177 I P ++K GG +G+ + + + + + + Y++ Sbjct: 144 HRQAAAIGYPVMLKSTAGGGGIGLALCRGEAKLTESFQAVQRLSENNFRDGGVYLEKYVE 203 Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236 + E V ++ + PA + + + + A + Sbjct: 204 RARHLEVQIFGDGEGRVIALGERDCSIQRRNQKLLEETPAPGICETLRERLCEAAVCLGR 263 Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292 A+G R +F++D + ++LE+N + G+T A AG +L+ WM Sbjct: 264 AVGYRSAGTVEFIYDAEAADFYFLEVNTRLQVEHGVTE--------AVAGI---DLVEWM 312 Query: 293 VEDASCLR 300 V A+ R Sbjct: 313 VRLAAGER 320 >gi|326798542|ref|YP_004316361.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp. 21] gi|326549306|gb|ADZ77691.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp. 21] Length = 938 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG A +L++ G +VS I+ + S+ +L + D Sbjct: 29 SGSQAALSLKEEGIEVSIINSNPATIMTDKVIADHVYLLPLTVDSIEKILQERQIDAVLP 88 Query: 57 VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111 + G + ++A I E + + A + ++ +Q++ GV V S Sbjct: 89 TMGGQTALNLCIEASNRGIWEKYGVQVIGVDVAAIEKTENREAFRQLMIEIGVGVAKSKI 148 Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 ++ I P VI+P G + K + L + + ++L+EQ Sbjct: 149 ANSFLEGKEAAQQIGFPLVIRPSYTLGGTGGGFVHKKEDFEAALSRGLQASPTHEVLVEQ 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 V G + + + D I +F + + + + Sbjct: 209 AVLGWKEYELELLRDNKDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDTCYQEMRNQA 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + G F +P + + +EIN P ++ S + GY ++ Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPENEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 11/265 (4%) Query: 27 EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86 + F+ V ++ KP+ L G + + I T + Sbjct: 611 DKLYFEPVFW---EHVREIIDLEKPEGVIVQLGGQTALKMAEKLKETGIRIIGTSFEDMD 667 Query: 87 SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146 A + P + + + P +++P G+ ++ Sbjct: 668 LAEDRGRFSDLLKELDIPYPKYGVAENAEEALKVANEVGYPVLVRPSYVLGGQGMSIVIN 727 Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206 D+ + +++ G+++LI+ ++D + I + Sbjct: 728 DEELEKAVIKIMKNMPGNRVLIDHFLD-RAEEAESDSICDGEEVHIIGMMEHIEP-AGIH 785 Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266 S +S + P + + +++ + +A+ +G+ F KV+ +E N + Sbjct: 786 SGDSSAVLPPFSLSTAVQEKMDEYSRKIAKALNVKGLLNIQFAI--KDGKVYVIEANPRA 843 Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291 T P +A + + Sbjct: 844 SRT----VPFIAKAYDVPYINIATK 864 >gi|294790943|ref|ZP_06756101.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata F0304] gi|294458840|gb|EFG27193.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata F0304] Length = 1071 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG +L + G++V I+ + V+ +PD Sbjct: 29 SGSQACQSLREEGYEVVLINSNPATIMTDASIADRVYIEPLTVDFAKRVIYKERPDAILG 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110 L G G + +V+ L+ + + + + A + D+ + +++ VP Sbjct: 89 TLGGQTGLNLVVELHQNGILDSMGVEILGTDLEAINKAEDRELFRSLMNDLGEPVPESDI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + P V++P G + ++ + + Q LIE+ Sbjct: 149 VHSVEAAVQFASQLGYPLVVRPAYTLGGTGGGFVHNEKELRHIADAGLKMSPVHQCLIER 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + + D + + + + + + ++ Sbjct: 209 SIAGFKEIEYEVMRDASDNAIVVCAMENIDPVGIHTGDSVVVAPVQTLTDRE-NQMLRDA 267 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + +A+ G DP S + +E+N P ++ S + GY ++ Sbjct: 268 SLRIIRALKICGGCNVQLALDPQSFSYYVIEVN--PRVSRSS--ALASKATGYPIAKISA 323 Query: 291 WM 292 + Sbjct: 324 KL 325 Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 33/284 (11%) Query: 22 CASALEDAGFKVSQID-------VDRSVGLVLAHLKP---DL--AFNVLH---------G 60 C L+ G++ I+ D S+ L D+ N+ H G Sbjct: 577 CVETLKKEGYEAIVINNNPETVSTDFSISDKLYFEPLTTEDVMNVINLEHPLGVIVQFGG 636 Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120 + ++I T + A + + P + + + Sbjct: 637 QTAINIAASLQERGVKILGTSLKNIDKAEDRHEFETALQELGIPQPQGDTAVTVDQALVI 696 Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179 + I P +++P + ++ D + + + +H +L+++YV G EL Sbjct: 697 ANQIGYPVLVRPSYVLGGRAMEIVHNDDELKVYMSTAVKEISHDAPILVDRYVVGKELET 756 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238 + D P + S +S V P +I D + + + A + Sbjct: 757 DAIADGENVYI----PGVMEHIERAGIHSGDSISVYPTQIISDQVKETIIDYAERIGRGF 812 Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277 G+ F+ D + KV+ LE+N P ++ ++ P Sbjct: 813 HFIGLYNIQFIVD-KNNKVYVLEVNPRSSRTVPFLSKITSVPMS 855 >gi|166033410|ref|ZP_02236239.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC 27755] gi|166026595|gb|EDR45352.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC 27755] Length = 1175 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 43/285 (15%) Query: 19 GKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPD---------------LAFN 56 AL + G I + L PD +A N Sbjct: 46 AIRVFRALNELGIVTVSIYSKEDRYALFRSKADESYPLNPDKGPIDAYLDIDTIIKIALN 105 Query: 57 V----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109 +H G E+ E I + DK+ SKQ+ + VP+ P Sbjct: 106 AGVDAIHPGYGFLSENPEFVDACEQNGITFIGPSSDIMRAMGDKISSKQIAIAADVPIIP 165 Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWN 161 + + + I+ P ++K GG G+ ++ + +S Sbjct: 166 GVDHAMKSYEEAAKIADMVGYPIMLKASNGGGGRGMRIVNDPADLEKEFNEARNESKKAF 225 Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220 D + +E+Y+ G + V+GD +V + K +P Sbjct: 226 GDDMIFVEKYLKGPKHIEVQVIGDNYGNVVHLFDRDCSVQRRHQKVVEYAPAFTIPD--- 282 Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 + +++ A + +G +FL D +++E+N + Sbjct: 283 -ETREKIFDAAIRLCKNVGYVNAGTLEFLVD-RDNNPYFIEMNPR 325 >gi|119356367|ref|YP_911011.1| carbamoyl-phosphate synthase large subunit [Chlorobium phaeobacteroides DSM 266] gi|119353716|gb|ABL64587.1| carbamoyl-phosphate synthase large subunit [Chlorobium phaeobacteroides DSM 266] Length = 492 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVVLVNSNPATIMTDIEMADATYIEPITPDYVRKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110 + G + V ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVTLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAKEALEEIGLPIVIRPSFTLGGTGGGFAESKADYYDAVRRGLAESPISEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 CLVGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VRIIREIGVETGGSNIQFAIHPRTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|85373966|ref|YP_458028.1| carbamoyl phosphate synthase large subunit [Erythrobacter litoralis HTCC2594] gi|84787049|gb|ABC63231.1| carbamoyl-phosphate synthase large subunit [Erythrobacter litoralis HTCC2594] Length = 1109 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL + G++V ++ + + V ++A KPD Sbjct: 29 SGTQAIKALREEGYRVVLVNSNPATIMTDPEMADATYVEPIVPEIVAKIIAKEKPDALLP 88 Query: 57 VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G +L + + A + ++ R ++ + S G+ S + Sbjct: 89 TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDSIGLESARSGI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 N + L P +I+P G + Q + + + ++LIE+ Sbjct: 149 ANTLEEAREVLKRTGLPSIIRPSFTLGGTGGGIAYNTQEFDRIVREGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEFEMEVVRDRKDNAIIICAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ + Sbjct: 269 INVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 I P +++P + ++ + + + + + + +L++QY D IE Sbjct: 741 AARIGYPVLLRPSYVLGGRAMEIVDSEAQLDDYIRTAVNVSGESPVLVDQYLRDAIECDV 800 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 V+ D + + +S ++ + P +P +I +E++R A A+ Sbjct: 801 DVISDGEEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLPNEIIEEMERQAEALAIALK 857 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 RG+ F +V+ +E+N + T P +A G ++ Sbjct: 858 VRGLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIGRPIAKIASR 903 >gi|110597092|ref|ZP_01385381.1| Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain, oligomerisation:Carbamoyl-phosphate synthetase large chain-like [Chlorobium ferrooxidans DSM 13031] gi|110341283|gb|EAT59748.1| Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain, oligomerisation:Carbamoyl-phosphate synthetase large chain-like [Chlorobium ferrooxidans DSM 13031] Length = 492 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVILVNSNPATIMTDVEFADATYIEPITPEYVQKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110 + G + V ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVALAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGVF 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ I P +I+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAKEALEEIGLPIIIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPISEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I +F + + + Sbjct: 209 CLFGWKEYELEVIRDLADNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VRIIREIGVETGGSNIQFAIHPGNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|307295448|ref|ZP_07575284.1| carbamoyl-phosphate synthase, large subunit [Sphingobium chlorophenolicum L-1] gi|306878487|gb|EFN09707.1| carbamoyl-phosphate synthase, large subunit [Sphingobium chlorophenolicum L-1] Length = 1111 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL++ G+++ ++ + + V ++ +PD Sbjct: 29 SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVAKIIEKERPDAVLP 88 Query: 57 VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + + L+ + + A + D+++ + + G+ S + Sbjct: 89 TMGGQTALNTALALFNDGTLDKFGVKMIGADAAAIDKAEDRLKFRDAMDKIGLESARSRI 148 Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + L P +I+P G V + + + + ++LIE+ Sbjct: 149 AHTMEEALEALEFTGLPSIIRPSFTLGGTGGGVAYNKEEFKRIVAEGLDASPTTEVLIEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + + Sbjct: 209 SLLGWKEYEMEVVRDRNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P ++ +E+N P ++ S + G+ ++ Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 Score = 44.1 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 10/172 (5%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179 + I P +++P + ++ + + + + +LI+QY D IE+ Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAIEVDV 799 Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239 + D V + + +S ++ + P + DI E++R A + +A+ Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSDDIIAEIERQADVLARALS 856 Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 RG+ F V+ +E+N + T P +A G ++ Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902 >gi|296421031|ref|XP_002840070.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636281|emb|CAZ84261.1| unnamed protein product [Tuber melanosporum] Length = 381 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 25/194 (12%) Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---------HGDQLLIEQYV 172 + + P ++KP++G S G+ +I S+ L G++ + Sbjct: 165 YDLPYPVIVKPVRGRGSEGVQLIDGFVSMLDTLDDLFKTYDVLLIEEFLEGEEGTVTVVP 224 Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 DG + +P + ++ VLP ++ + Sbjct: 225 DGQGRFVALPIVQRFGQVAGVMPWNGHVP------VTTNSTVLPVGEEDLWHRAAKIECQ 278 Query: 233 LAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPV---------SIFPEMAAYAG 282 A + + I+R D D K F ++N +P +T S+ A G Sbjct: 279 KAAELLKLTSITRIDIRRKDENGGKFFLFDVNPKPNLTGTGRPGRDSQDSLCAMAAREFG 338 Query: 283 YSFRELLLWMVEDA 296 + + L+ ++ A Sbjct: 339 WEYPALVRKCIDAA 352 >gi|194333332|ref|YP_002015192.1| carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris aestuarii DSM 271] gi|194311150|gb|ACF45545.1| Carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris aestuarii DSM 271] Length = 495 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL++ G++V ++ + V ++ KPD Sbjct: 29 SGTQACRALKEDGYRVILVNSNPATIMTDVEFAHSTYIEPITPEYVQKIIEKEKPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V + ILE + + + A + ++ + G+ + Sbjct: 89 TMGGQTALNTAVALAERGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148 Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 V + L I P VI+P G + + + + + ++L+E+ Sbjct: 149 VRNEKEAKEALESIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + + D I + + + Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQALRDAS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G S F +P + ++ +E+N P ++ S + G+ ++ Sbjct: 269 VKIIREIGVETGGSNIQFAINPDNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|238760098|ref|ZP_04621248.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] gi|238701717|gb|EEP94284.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236] Length = 36 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 6 GGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39 GG S+EREVSL SG+A + L +AG ID Sbjct: 3 GGTSAEREVSLLSGQAVLAGLREAGIDAYGIDTK 36 >gi|163840705|ref|YP_001625110.1| carbamoyl phosphate synthase large subunit [Renibacterium salmoninarum ATCC 33209] gi|189081832|sp|A9WSA8|CARB_RENSM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain gi|162954181|gb|ABY23696.1| carbamoyl-phosphate synthase large subunit [Renibacterium salmoninarum ATCC 33209] Length = 1106 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG L++ G +V ++ + V ++A +PD Sbjct: 29 SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDALLP 88 Query: 57 VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G + +L + + I A L D+ + K VV CG S Sbjct: 89 TLGGQTALNTAIALDKNGVLAKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + + + P V++P LG + ++ + ++ ++L+E+ Sbjct: 149 VHAMDEALVAAADLGYPLVVRPSFTMGGLGSGLAYNEKDLHRIAGAGLQYSPTSEVLLEE 208 Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230 + G + M D + +F + + + Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDREYQNLRDIS 268 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290 + + G F +P + +V +E+N P ++ S + G++ ++ Sbjct: 269 IAVIREVGVDTGGCNIQFAIEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324 Query: 291 WM 292 + Sbjct: 325 KL 326 >gi|163738698|ref|ZP_02146112.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107] gi|161388026|gb|EDQ12381.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107] Length = 1146 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 1/155 (0%) Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++K GG G+ I + + +L+ E Y Sbjct: 142 NDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGY 201 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL- 230 ++ + + L + ++ + PA + + Sbjct: 202 LEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRTEICDL 261 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Q + +FL D K +++E+N + Sbjct: 262 GRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296 >gi|163741590|ref|ZP_02148981.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10] gi|161385324|gb|EDQ09702.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10] Length = 1146 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 1/155 (0%) Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 + P ++K GG G+ I + + +L+ E Y Sbjct: 142 NDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGY 201 Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL- 230 ++ + + L + ++ + PA + + Sbjct: 202 LEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRTEICDL 261 Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265 Q + +FL D K +++E+N + Sbjct: 262 GRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296 >gi|225159230|ref|ZP_03725532.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium TAV2] gi|224802177|gb|EEG20447.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium TAV2] Length = 1075 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 101/299 (33%), Gaps = 38/299 (12%) Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56 SG AL G+++ ++ + + + ++A +PD Sbjct: 29 SGTQACKALRACGYQIVLVNSNPATIMTDPVMADATYIEPLNVARLEQIIAKERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110 L G G + + IL+ + + A D+ K+ + + G+ + S Sbjct: 89 NLGGQTGLNLSLELSKKGILQKYGVEVIGVNLDAIERGEDREIFKETMRALGIGLPDSRI 148 Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170 + + ++ P V++P G ++ + + + S + Q LIEQ Sbjct: 149 VHTVEEAELAAAELNYPVVVRPAYTMGGTGGGLVYNIDELRTTVARGLSLSMTTQCLIEQ 208 Query: 171 YVDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227 + G E + + + +PA D+ K++ Sbjct: 209 SILGWEELEVEVVRDASGKMITVCFIENVDAVGVHTGDSFCTAPMLTIPA----DVQKQL 264 Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286 Q +A+ ++IG G + DP + ++ +EIN + T S + G+ Sbjct: 265 QEIAYKVVESIGVIGGTNVQLARDPATGRIVIIEINPR---TSRSS-ALASKATGFPIA 319 Score = 41.8 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%) Query: 25 ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63 AL +AG++ + D D V + A +P G Sbjct: 588 ALREAGYETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLQIHAKERPIGVIVQFGGQTP 647 Query: 64 EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123 + + + I T + +A D R +P + + Sbjct: 648 LNIARELAANGVRILGTSIDTIDTAEDRDLFRQMMERLDIPMPESGMASTIDEAISVANR 707 Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183 I P +I+P G+ +I + + + ++ + LL+++++ + Sbjct: 708 IGYPIMIRPSFILGGRGMEIIYDEDMLREYVAKAIDVSPERPLLLDRFL---QSALECEA 764 Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242 DA D ++ +P + S +S V+P + + Q + G Sbjct: 765 DALADGKDVFIPAVMEHIELAGVHSGDSACVIPPVTIPQKHLDTINAYTRKIAQELKVVG 824 Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300 + + + KV+ LE N + T P ++ + ++ AS + Sbjct: 825 LMNMQYAI--ENDKVYVLEANPRASRT----VPLVSKVCNVQMARIATQLMLGASIPK 876 >gi|229139252|ref|ZP_04267827.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] gi|228644311|gb|EEL00568.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26] Length = 53 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%) Query: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50 + V+MGG+SSE++VS+ +G + L+ +++ I ++ G + Sbjct: 3 IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKNGFNRKSER 52 >gi|88808802|ref|ZP_01124312.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH 7805] gi|88787790|gb|EAR18947.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH 7805] Length = 1107 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 99/314 (31%), Gaps = 41/314 (13%) Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56 SG AL+ G++V ++ + V V+ +PD Sbjct: 29 SGTQACKALKAEGYEVVLVNSNPASIMTDPEMADRTYVEPLTPEVVTRVIERERPDALLP 88 Query: 57 VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + V L+ I + + A + D+ K+ + GV VCPS + Sbjct: 89 TMGGQTALNLAVALAEDGTLDRFGIELIGADLKAIRKAEDRQLFKEAMERIGVKVCPSGI 148 Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 ++ + + P +I+P G + + + Q+LIE Sbjct: 149 ASSMDEAKDVGASIGTFPRIIRPAFTLGGSGGGIAYNPEEFDAICKSGLDASPVSQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 + + G + + D I + + + + + + Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279 + + G S F +P V +E+N P ++ S ++AA Sbjct: 269 SIAIIREIGVATGGSNIQFAINPQDGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAK 326 Query: 280 -YAGYSFRELLLWM 292 GY+ E+L + Sbjct: 327 LAVGYTLDEILNDI 340 >gi|318041817|ref|ZP_07973773.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. CB0101] Length = 1097 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 41/314 (13%) Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56 SG AL GF+V + D D V V+ +PD Sbjct: 29 SGTQACKALRAEGFEVVLVNSNPASIMTDPDMADRTYIEPLTPDVVRRVIEQERPDALLP 88 Query: 57 VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112 + G + LE + + + A + D+ KQ + GV VCPS + Sbjct: 89 TMGGQTALNLAVTLAKDGTLEQYGVELIGANLQAIEKAEDRDLFKQAMERIGVAVCPSGI 148 Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169 + S P +I+P G + + L + +Q+LIE Sbjct: 149 ATTLEEAEAVGEQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAICLSGLDASPVNQILIE 208 Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229 Q + G + + + D I + + + + + + Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268 Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279 + + G S F +P + V +E+N P ++ S ++AA Sbjct: 269 AIAIIREIGVDTGGSNIQFAINPANGDVIVIEMN--PRVSRSSALASKATGFPIAKIAAR 326 Query: 280 -YAGYSFRELLLWM 292 GY+ E+L + Sbjct: 327 LAVGYTLDEILNDI 340 Score = 39.9 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 7/172 (4%) Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180 + P V++P + V+ ++ + + ++ + +LI+QY++ Sbjct: 729 AERVGYPVVVRPSYVLGGRAMEVVFGEEELNRYMSEAVNVEPDHPVLIDQYLEN-ATEVD 787 Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240 V + + +S ++ + + +++ + A+ Sbjct: 788 VDALCDATGRVVIGGLMEHIEPAGVHSGDSACALPAVSLEQQALATIR