RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (300 letters)



>gnl|CDD|31374 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp
           enzymes [Cell envelope biogenesis, outer membrane].
          Length = 317

 Score =  271 bits (695), Expect = 1e-73
 Identities = 117/314 (37%), Positives = 177/314 (56%), Gaps = 20/314 (6%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPDLA 54
           AVL+GG S+EREVSL S KA   AL+  G+ V+ +D+  +   +L          K D+ 
Sbjct: 6   AVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVV 65

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F VLHG +GEDG +Q +LELL IPY   G+LASA +MDK+ +K++  + G+PV P + + 
Sbjct: 66  FPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALT 125

Query: 115 RFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           R    S  +      +  P  +KP + GSS+G   +  +    L      ++ +   +L 
Sbjct: 126 RDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGD--LQSALELAFKYDRDVLR 183

Query: 169 EQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDI 223
           EQ + G E+  GV+G+     +L + EI     +FY YE KY S     + +PA +  +I
Sbjct: 184 EQGITGREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEI 243

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           ++E++ LA  A++A+GC G++R DF  D    +   LE+N  PGMT +S+FP+ AA AG 
Sbjct: 244 HEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGI 303

Query: 284 SFRELLLWMVEDAS 297
           SF  L+L  VE A 
Sbjct: 304 SFAILVLRFVELAL 317


>gnl|CDD|145141 pfam01820, Dala_Dala_lig_N, D-ala D-ala ligase N-terminus.  This
           family represents the N-terminal region of the
           D-alanine--D-alanine ligase enzyme EC:6.3.2.4 which is
           thought to be involved in substrate binding. D-Alanine
           is one of the central molecules of the cross-linking
           step of peptidoglycan assembly. There are three enzymes
           involved in the D-alanine branch of peptidoglycan
           biosynthesis: the pyridoxal phosphate-dependent
           D-alanine racemase (Alr), the ATP-dependent
           D-alanine:D-alanine ligase (Ddl), and the ATP-dependent
           D-alanine:D-alanine-adding enzyme (MurF).
          Length = 110

 Score =  102 bits (257), Expect = 1e-22
 Identities = 44/107 (41%), Positives = 54/107 (50%), Gaps = 26/107 (24%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
           AVL GG SSE EVSL S +A   AL+  G++V  ID+D+                     
Sbjct: 4   AVLFGGRSSEHEVSLKSARAVLKALDKEGYEVIPIDIDKDGRWLLGDGDLGLLAPDDKLD 63

Query: 41  -----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                 +  VL   K D+ F VLHG FGEDG +Q +LELL IPY  S
Sbjct: 64  LEDKAELLAVLLAEKVDVVFPVLHGPFGEDGTIQGLLELLGIPYVGS 110


>gnl|CDD|30806 COG0458, CarB, Carbamoylphosphate synthase large subunit (split
           gene in MJ) [Amino acid transport and metabolism /
           Nucleotide transport and metabolism].
          Length = 400

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 16/225 (7%)

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           N   +   + +LE   +    S   A  ++ DK   K+ +   G+PV   I  +    D 
Sbjct: 85  NAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHSVEEADE 144

Query: 121 -QHLISPPYVIKPL--KGGSSLGIIVIKKD--QSIPLDLLQSSSWNHGDQLLIEQYVDG- 174
               I  P ++KP    GGS  GI   +++  + I   L  S      +++LIE+ + G 
Sbjct: 145 IADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPV----EEVLIEESIIGW 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL- 233
            E    V+ D   +   +     +     +   + +S  V PA+   D   ++ R A + 
Sbjct: 201 KEFEYEVVRDGKDNCI-VVCNMENLD--PMGVHTGDSITVAPAQTLTDKEYQMLRDAAIK 257

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
             + IG  G     F  DP   +++ +EIN  P ++  S     A
Sbjct: 258 VIREIGIEGGCNIQFAVDPGGGELYVIEIN--PRVSRSSALASKA 300


>gnl|CDD|30788 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
          Length = 449

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 37/212 (17%), Positives = 83/212 (39%), Gaps = 20/212 (9%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--- 120
           E+           + +      A     DK+ ++++++  GVPV P         +    
Sbjct: 87  ENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALA 146

Query: 121 -QHLISPPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVDG- 174
               I  P ++K   GG   G+ V++     + +      ++ +     ++ +E++++G 
Sbjct: 147 IAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206

Query: 175 --IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLA 231
             IE+   V+GD   +V  +           ++          P+  +  ++ +++   A
Sbjct: 207 RHIEVQ--VLGDGHGNVIHLGE-----RDCSIQRRHQKVIEEAPSPLLTEELREKIGEAA 259

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             A + IG RG    +FL+D      F +E+N
Sbjct: 260 VRAAKLIGYRGAGTVEFLYDSNGEFYF-IEMN 290


>gnl|CDD|145768 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
           binding domain.  Carbamoyl-phosphate synthase catalyses
           the ATP-dependent synthesis of carbamyl-phosphate from
           glutamine or ammonia and bicarbonate. This important
           enzyme initiates both the urea cycle and the
           biosynthesis of arginine and/or pyrimidines. The
           carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
           is a heterodimer of a small and large chain. The small
           chain promotes the hydrolysis of glutamine to ammonia,
           which is used by the large chain to synthesize carbamoyl
           phosphate. See pfam00988. The small chain has a GATase
           domain in the carboxyl terminus. See pfam00117. The ATP
           binding domain (this one) has an ATP-grasp fold.
          Length = 211

 Score = 36.5 bits (85), Expect = 0.008
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD-SQHL---ISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+  K  +   GVP  P       T + +      I  P +IK   GG  LG+ + + +
Sbjct: 1   DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE 60

Query: 148 ----QSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
               +   L L ++ +     Q+L+E+ + G   IE    V+ DA  +   I V   +  
Sbjct: 61  EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQ--VLRDAHGNC--ITVCNRECS 116

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               +  +  S  V P++ +  +  + ++  A    + +G  G    +F  DP S + ++
Sbjct: 117 ---DQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYF 173

Query: 260 LEIN 263
           +E+N
Sbjct: 174 IEMN 177


>gnl|CDD|35459 KOG0238, KOG0238, KOG0238, 3-Methylcrotonyl-CoA carboxylase,
           biotin-containing subunit/Propionyl-CoA carboxylase,
           alpha chain/Acetyl-CoA carboxylase, biotin carboxylase
           subunit [Lipid transport and metabolism, Amino acid
           transport and metabolism].
          Length = 670

 Score = 35.7 bits (82), Expect = 0.016
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 24/186 (12%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK  SKQ++ + GVP+ P    +      +        I  P +IK   GG   G+ +  
Sbjct: 111 DKSTSKQIMKAAGVPLVPGY--HGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAW 168

Query: 146 KDQSIPLDLLQSSSWNHG-----DQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKS 197
            ++    + L+S+          D +L+E+++D    IE+   V GD   +   + + + 
Sbjct: 169 SEEEF-EEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQ--VFGDKHGNA--VHLGER 223

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           D  S + +   +      P  +P +  + +   A  A +A+G  G    +F+ D      
Sbjct: 224 DC-SVQRRNQKIIEEAPAPN-LPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNF 280

Query: 258 FWLEIN 263
           +++E+N
Sbjct: 281 YFMEMN 286


>gnl|CDD|145680 pfam02655, ATP-grasp_3, ATP-grasp domain.  No functional
           information or experimental verification of function is
           known in this family. This family appears to be an
           ATP-grasp domain (Pers. obs. A Bateman).
          Length = 160

 Score = 34.3 bits (79), Expect = 0.039
 Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK+++ + + + GVP  P  L    + +        Y++KP  G    G+  ++  +   
Sbjct: 3   DKLKTYKALKNAGVP-TPETL----SAEEPTEEEKKYIVKPRDGCGGEGVRFVENGREDE 57

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS--DFYSYELKYSSL 209
             +         + ++I+++++G  L+  ++ D       ++V +   D       Y+  
Sbjct: 58  EFI---------ENVIIQEFIEGEPLSVSLLSDGE-KALPLSVNRQLIDNAGSGFVYAG- 106

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFL 249
           N T   P++  L   +E++ LA    +A+ G RG    D +
Sbjct: 107 NLT---PSRTELK--EELEELAEEVVEALPGLRGYVGVDLV 142


>gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production
           and conversion].
          Length = 1176

 Score = 32.3 bits (73), Expect = 0.17
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 18/183 (9%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPLKGGSSLGIIVIKKD 147
           DK+ ++ +    GVPV P       T++           P +IK   GG   G+ V++  
Sbjct: 147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSG 206

Query: 148 QSIPLDLLQSSS---WNHGD-QLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
           + +     ++ S      G+  L +E++++    IE+   ++GD   +V  +        
Sbjct: 207 EDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQ--LLGDKHGNVVHLYERDCSVQ 264

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               K   +     LP ++   I  +  +LA    + +G       +FL D   R  F +
Sbjct: 265 RRHQKVVEIAPAKTLPPEVRDAILTDAVKLA----KHVGYENAGTVEFLVDQKGRHYF-I 319

Query: 261 EIN 263
           E+N
Sbjct: 320 EVN 322


>gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
           transport and metabolism].
          Length = 428

 Score = 32.1 bits (73), Expect = 0.17
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKP--LKGGS 137
           A+ L   K  +K  +   G+P   +     FT D +   +       P V+K   L  G 
Sbjct: 97  AAQLEGSKAFAKDFMKKYGIP---TAEYEVFT-DPEEAKAYIDEKGAPIVVKADGLAAGK 152

Query: 138 SLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             G+IV    +    ++   L  ++  + G +++IE+++DG E +     D
Sbjct: 153 --GVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVD 201


>gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
           (A) domain.  Phosphoribosylglycinamide synthetase
           catalyses the second step in the de novo biosynthesis of
           purine. The reaction catalysed by
           Phosphoribosylglycinamide synthetase is the ATP-
           dependent addition of 5-phosphoribosylamine to glycine
           to form 5'phosphoribosylglycinamide. This domain is
           related to the ATP-grasp domain of biotin
           carboxylase/carbamoyl phosphate synthetase (see
           pfam02786).
          Length = 193

 Score = 31.5 bits (72), Expect = 0.30
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 18/105 (17%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------PPYVIKP--LKGGSSLGIIV 143
            K  +K  +   G+P            D +   S       P V+K   L  G   G+IV
Sbjct: 2   SKSFAKDFMKRHGIPTAEYETFT----DPEEAKSYIREAGFPAVVKADGLAAGK--GVIV 55

Query: 144 IK-KDQSIPL--DLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGD 184
               +++I    ++L+   +   G+ ++IE++++G E++     D
Sbjct: 56  AMDNEEAIKAVDEILEQKKFGEAGEPVVIEEFLEGEEVSVLAFVD 100


>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
           and related enzymes [Amino acid transport and
           metabolism].
          Length = 386

 Score = 31.3 bits (71), Expect = 0.33
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 22  CASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLA-FNVLHGNFGEDGLVQAILELLE 76
               LE  GF+V+ + VD      +  +   L+PD    +++H N  E G +Q I E+ E
Sbjct: 107 TCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHAN-NETGTIQPIAEIGE 165

Query: 77  IPYTHSGIL 85
           I      + 
Sbjct: 166 ICKERGILF 174


>gnl|CDD|35119 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 823

 Score = 28.4 bits (63), Expect = 2.5
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPY---THSGILASALSMDKMRSK 97
           P L  NVL      D LV+   ELL +     T   +++  + + +  S 
Sbjct: 562 PFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESS 611


>gnl|CDD|48539 cd02990, UAS_FAF1, UAS family, FAS-associated factor 1 (FAF1)
           subfamily; FAF1 contains a UAS domain of unknown
           function N-terminal to a ubiquitin-associated UBX
           domain. FAF1 also contains ubiquitin-associated UBA and
           nuclear targeting domains, N-terminal to the UAS domain.
           FAF1 is an apoptotic signaling molecule that acts
           downstream in the Fas signal transduction pathway. It
           interacts with the cytoplasmic domain of Fas, but not to
           a Fas mutant that is deficient in signal transduction.
           It is widely expressed in adult and embryonic tissues,
           and in tumor cell lines, and is localized not only in
           the cytoplasm where it interacts with Fas, but also in
           the nucleus. FAF1 contains phosphorylation sites for
           protein kinase CK2 within the nuclear targeting domain.
           Phosphorylation influences nuclear localization of FAF1
           but does not affect its potentiation of Fas-induced
           apoptosis. Other functions have also been attributed to
           FAF1. It inhibits nuclear factor-kB (NF-kB) by
           interfering with the nuclear translocation of the p65
           subunit. FAF1 also interacts with valosin-containing
           protein (VCP), which is involved in the
           ubiquitin-proteosome pathway..
          Length = 136

 Score = 28.4 bits (63), Expect = 2.5
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGL 67
           S +   LSS      ++  A   +  I  D+  ++ +++     +   NV+ GN G D L
Sbjct: 68  SNKARFLSSCTRHFGSV--AAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDEL 125

Query: 68  VQAILELLEI 77
           +  ++E +E+
Sbjct: 126 LMRLIEAMEM 135


>gnl|CDD|31240 COG1038, PycA, Pyruvate carboxylase [Energy production and
           conversion].
          Length = 1149

 Score = 28.3 bits (63), Expect = 2.7
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK++++      GVPV P       T++           P +IK   GG   G+ V++ +
Sbjct: 121 DKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSE 180

Query: 148 QSIPLDLLQSSSWNHG----DQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFY 200
             +     ++ S        D++ +E+ V+    IE+   ++GD   +V  +        
Sbjct: 181 ADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQ--ILGDTHGNVVHL-------- 230

Query: 201 SYELKYSSLNSTH-----VLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +E +  S+   H     V PA  +  ++  E+   A    + IG       +FL D   
Sbjct: 231 -FE-RDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDG 288

Query: 255 RKVFWLEIN 263
           +  F +E+N
Sbjct: 289 KFYF-IEVN 296


>gnl|CDD|31775 COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].
          Length = 248

 Score = 28.1 bits (62), Expect = 3.2
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN----VLHGNFGEDGLVQAILE 73
           G+  A AL   G KV  I  D     +L  L   L       +L GN G + L + + E
Sbjct: 86  GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEE 144


>gnl|CDD|36256 KOG1038, KOG1038, KOG1038, Mitochondrial/chloroplast DNA-directed
           RNA polymerase RPO41, provides primers for DNA
           replication-initiation [Transcription, Replication,
           recombination and repair].
          Length = 1088

 Score = 27.6 bits (61), Expect = 4.4
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           + +++P+  P D+Y  V        +    +G   +  L D ++RKV
Sbjct: 802 AVNLVPSDKPQDVYSAVAARVEKIMKQDAEKGPEVAKILKDQVTRKV 848


>gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
          Length = 323

 Score = 27.1 bits (60), Expect = 6.3
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 9/48 (18%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF----NVLHGNFG 63
           +A   ALEDAG     ID      +++A   PD  F     ++    G
Sbjct: 58  EAARKALEDAGISPDDID-----LIIVATSTPDHLFPSTACLVQARLG 100


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0732    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,588,552
Number of extensions: 185817
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 19
Length of query: 300
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 207
Effective length of database: 4,254,100
Effective search space: 880598700
Effective search space used: 880598700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)