RPSBLAST alignment of GI: 254781179 and protein with PDBid: 3k3p

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383
 Score =  233 bits (596), Expect = 3e-62
 Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 42/334 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            +L GG S+ER+VS+ S ++   A+    F V    + ++   +                
Sbjct: 41  VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLM 100

Query: 49  -----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                             +  + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 101 TNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAM 160

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGIIVI 144
           DK+ + QV+ S       + +        +  ++        P  +KP   GSS+GI   
Sbjct: 161 DKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKA 220

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +      L    + +  +  ++LIEQ VD  E+  G++G+  +  T     V    FY Y
Sbjct: 221 ENRTD--LKQAIALALKYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYDY 278

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  E+
Sbjct: 279 EAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNEL 337

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+  L+  +V  A
Sbjct: 338 NTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371