RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781180|ref|YP_003065593.1| hypothetical protein
CLIBASIA_05435 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 25.7 bits (56), Expect = 1.2
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 1   MHSIHQSTNSCDLVNNEQLTEIEEP----QKVTVDQINNAIASLI 41
           ++++ +S ++C + +NE L ++       +  TVD +N  I   +
Sbjct: 191 LNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEAL 235


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score = 25.3 bits (55), Expect = 1.6
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 1   MHSIHQSTNSCDLVNNEQLTEIEEP----QKVTVDQINNAIASLI 41
            H+  + ++   +V+NE + +I       ++ T   +N  I  ++
Sbjct: 191 THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 235


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 1   MHSIHQSTNSCDLVNNEQLTEI----EEPQKVTVDQINNAIASLI 41
           +H + ++T+    ++NE L +I     +    T   +N+ +++ +
Sbjct: 189 VHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATM 233


>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId:
           562]}
          Length = 193

 Score = 23.6 bits (51), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30  VDQINNAIA-SLIPEERRDLQDRMAKYS 56
           V QI   I  +    +R  LQ+R+AK +
Sbjct: 163 VAQIRQQIEEATSDYDREKLQERVAKLA 190


>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 234

 Score = 23.4 bits (49), Expect = 6.3
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 50  DRMAKYSTRKLKPRGRVIFAD 70
            +  +   R LK  GR +  D
Sbjct: 99  RKAVREVARVLKQDGRFLLVD 119


>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
          domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 23.2 bits (49), Expect = 7.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 33 INNAIASLIPEERRDLQDRMAKYSTRKLKPRGRVIFADD 71
          +++AI  L  EE+R L+  MAK+    L P+ + I   +
Sbjct: 1  VDDAINGL-SEEQRQLRQTMAKFLQEHLAPKAQEIDRSN 38


>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
           tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 184

 Score = 22.9 bits (49), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 30  VDQINNAIA-SLIPEERRDLQDRMAKYS 56
           V QI   I  S    +R  LQ+R+AK +
Sbjct: 155 VAQIRQEIENSDSDYDREKLQERLAKLA 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,375
Number of extensions: 8356
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 10
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)