Query gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 102 out of 125
Neff 4.9
Searched_HMMs 33803
Date Wed Jun 1 22:43:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781182.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8g_A A Possible Transciption 95.8 0.019 5.7E-07 34.7 5.2 53 12-64 65-120 (172)
2 >3brj_A Mannitol operon repres 95.1 0.036 1.1E-06 33.1 4.7 52 13-64 66-120 (175)
3 >1ylm_A Hypothetical protein B 67.9 9.5 0.00028 19.0 6.9 49 11-59 62-111 (144)
4 >2hsb_A Hypothetical UPF0332 p 62.8 12 0.00035 18.4 6.2 68 8-75 51-120 (126)
5 >1wwp_A Hypothetical protein T 56.6 15 0.00045 17.8 9.0 47 12-58 51-98 (119)
6 >1o3u_A Conserved hypothetical 55.0 16 0.00048 17.6 6.0 67 9-75 55-130 (135)
7 >1ufb_A TT1696 protein; struct 53.1 18 0.00052 17.5 5.5 66 10-75 51-125 (127)
8 >1irx_A Lysyl-tRNA synthetase; 28.6 44 0.0013 15.1 4.9 37 15-51 20-61 (70)
9 >2f7f_A Nicotinate phosphoribo 22.8 32 0.00095 15.9 1.0 35 19-53 71-106 (156)
10 >1ulz_A Pyruvate carboxylase N 22.0 50 0.0015 14.8 1.9 23 33-55 61-83 (104)
11 >2qf7_A Pyruvate carboxylase p 21.6 58 0.0017 14.4 2.1 23 33-55 81-103 (124)
No 1
>3c8g_A A Possible Transciptional Regulator Yggd {Shigella Flexneri 2a Str. 2457t} (A:)
Probab=95.78 E-value=0.019 Score=34.67 Aligned_cols=53 Identities=2% Similarity=-0.147 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHH
Q ss_conf 544889999999998689998999999999997313206888---89899999999
Q gi|254781182|r 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECLE 64 (94)
Q Consensus 12 ~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll~ 64 (94)
-+-|+++-||+.++.=|+|++....-++.+|...|..+|.++ |+-+.....+.
T Consensus 65 GPLg~lsvRikL~y~LG~Is~~~y~Di~~~~kiRn~l~h~~~~~~F~d~~i~~~i~ 120 (172)
T 3c8g_A 65 GPLDDIDVALRLIYALGXXDXWLYADITHFSQYWHYLNEQDETPGFADDITWDFIS 120 (172)
T ss_dssp STTCSHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCCCTTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 67210889999999718998889998999999999861577777768878999988
No 2
>>3brj_A Mannitol operon repressor; APC85967.1, MTLR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.75A {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=95.09 E-value=0.036 Score=33.06 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHH
Q ss_conf 44889999999998689998999999999997313206888---89899999999
Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECLE 64 (94)
Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll~ 64 (94)
+-|+++-||+.++.=|+|++....-++.+|...|..+|.+. |+-+.....+.
T Consensus 66 PLg~lsvRikL~y~LG~Is~~~y~Di~~~~kiRn~l~h~~~~~~F~d~~I~~~i~ 120 (175)
T 3brj_A 66 PLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIK 120 (175)
T ss_dssp TTCSHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHTCSSCCCTTSHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 8436999999999927988899987999999999983487778967879999987
No 3
>>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp} (A:)
Probab=67.90 E-value=9.5 Score=19.01 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHH
Q ss_conf 654488999999999868999899999999999731320688-8898999
Q gi|254781182|r 11 FEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEES 59 (94)
Q Consensus 11 ~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g-~~~~edA 59 (94)
...-++-.|-++.|.++|+|++....-+-.+--.+|..||.. ..+.+..
T Consensus 62 ~~~p~~y~d~~~~L~~~~ii~~~~~~~l~~i~g~RN~lvH~Y~~id~~~v 111 (144)
T 1ylm_A 62 XRDPGSYDDIXDILVDEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGEL 111 (144)
T ss_dssp CCCCSSGGGHHHHHHHTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99987899999999887997889999999999788777502344579999
No 4
>>2hsb_A Hypothetical UPF0332 protein AF0298; NP_069135.1, hypothetical protein, structural genomics, PSI- 2, protein structure initiative; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus} (A:)
Probab=62.78 E-value=12 Score=18.43 Aligned_cols=68 Identities=4% Similarity=-0.211 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 689654488999999999868999899999999999731320688--88989999999999999999986
Q gi|254781182|r 8 RINFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG--QSSIEESDECLEFVNLFCDIVFT 75 (94)
Q Consensus 8 ~l~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g--~~~~edA~~ll~f~~~il~~~~t 75 (94)
+...++.-++...+..+....-....+.+++..+...++.+--+. .++.++|..+++.+..++.++-.
T Consensus 51 g~~~~~~h~l~~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~rYp~~~~~~~~~a~~~i~~a~~~i~~v~~ 120 (126)
T 2hsb_A 51 GRDSKTHRGTIYLIWECREELGLSDDDCSKLSRAFDLREESDYGIYKEVSKDLAIKILKDAEIFVQKAKN 120 (126)
T ss_dssp TCCCSSHHHHHHHHHHTHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3779967889999998750025449999999999998750033444689999999999999999999999
No 5
>>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8} (A:)
Probab=56.61 E-value=15 Score=17.79 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHH
Q ss_conf 54488999999999868999899999999999731320688-889899
Q gi|254781182|r 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEE 58 (94)
Q Consensus 12 ~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g-~~~~ed 58 (94)
...+|-.+-++.|.+.|+|+......+-.+....|.-||.. +.+.+.
T Consensus 51 ~~~~s~~d~~~~l~~~giI~~~~~~~l~~~~~~RN~lvH~Y~~i~~~~ 98 (119)
T 1wwp_A 51 LEGASPKGVIRLAREVGLLRDEEARLALGXVDDRSLTVHTYNEPLARA 98 (119)
T ss_dssp CCCCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHGGGTTSHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 777995999999998798188319999999986585322245988999
No 6
>>1o3u_A Conserved hypothetical protein TM0613; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.75A {Thermotoga maritima} (A:)
Probab=55.05 E-value=16 Score=17.64 Aligned_cols=67 Identities=10% Similarity=-0.081 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 896544889999999998689998999999999997313206888---------8989999999999999999986
Q gi|254781182|r 9 INFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---------SSIEESDECLEFVNLFCDIVFT 75 (94)
Q Consensus 9 l~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---------~~~edA~~ll~f~~~il~~~~t 75 (94)
-..|++-++..-+..+...+..+.++.+.+..+......+-.++. .+.++|..++..++.++..+-.
T Consensus 55 ~~~~ktH~l~~L~~~l~~~~~~~~~~~~~~~~L~~~~~~~rYp~~~~~~~p~~~~~~~~a~~~i~~a~~i~~~v~~ 130 (135)
T 1o3u_A 55 GAQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCED 130 (135)
T ss_dssp TCCCCCSSHHHHHHHHTTTSCCCHHHHHHHHHHHSCC------CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988776799999988886413189999999998776707288865667851339999999999999999999999
No 7
>>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} (A:)
Probab=53.12 E-value=18 Score=17.46 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9654488999999999868999899999999999731320688---------88989999999999999999986
Q gi|254781182|r 10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG---------QSSIEESDECLEFVNLFCDIVFT 75 (94)
Q Consensus 10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g---------~~~~edA~~ll~f~~~il~~~~t 75 (94)
..|++-++..-+..+...+..+.++.+.+..+....-.+-.++ ..+.++|..+++.++.++.++-.
T Consensus 51 ~~~ktH~l~~l~~~~~~~~~~~~e~~~~~~~L~~~~~~~rYp~~~~~~~~~~~~~~~~a~~~i~~a~~i~~~v~~ 125 (127)
T 1ufb_A 51 QVAWGHSILDLLADLPEDVDVPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRLEAEEALDLAQKILAFVEE 125 (127)
T ss_dssp CCCCSSCHHHHHHTSCTTSCCCHHHHHHHHHHHTTSSTTTCGGGSSSSCGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 788753399999998863533099999999999867741288754567864569999999999999999999996
No 8
>>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} (A:364-433)
Probab=28.55 E-value=44 Score=15.13 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHCCC
Q ss_conf 8899999999986899989-----999999999973132068
Q gi|254781182|r 15 GMLSDRTRYLKQHNLIIEE-----IFEWSNFVRIEGNKAVHE 51 (94)
Q Consensus 15 g~l~dri~~L~~~g~I~~~-----i~~~~~~~R~~gN~a~H~ 51 (94)
++....++.|++.|+++++ +..+...+....|++---
T Consensus 20 ~d~e~i~~ilkr~G~~~~d~~e~~~e~~~~ri~~A~nW~eky 61 (70)
T 1irx_A 20 LTEEDIINVLIKQGHIPRDLSKEDVERVKLRINLARNWVKKY 61 (70)
T ss_dssp CCHHHHHHHHHHTTSSCSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 330678999877400153237767899999999999999984
No 9
>>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI, protein structure initiative; 2.00A {Enterococcus faecalis V583} (A:1-125,A:324-354)
Probab=22.78 E-value=32 Score=15.93 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHCCCCC
Q ss_conf 9999999868999899999999999731-3206888
Q gi|254781182|r 19 DRTRYLKQHNLIIEEIFEWSNFVRIEGN-KAVHEGQ 53 (94)
Q Consensus 19 dri~~L~~~g~I~~~i~~~~~~~R~~gN-~a~H~g~ 53 (94)
+-|++|+..++++++-.+|+...|..++ .|+++|.
T Consensus 71 eEi~yL~~~~~f~~~fle~L~~~rf~~~i~aipEG~ 106 (156)
T 2f7f_A 71 SDIAYLREVEEYPEDFLTYLANFEFKCTVRSALEGD 106 (156)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTCCCCCEEEECCTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCE
T ss_conf 999999848999979999998389995599834877
No 10
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:1-104)
Probab=22.04 E-value=50 Score=14.79 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999731320688889
Q gi|254781182|r 33 EIFEWSNFVRIEGNKAVHEGQSS 55 (94)
Q Consensus 33 ~i~~~~~~~R~~gN~a~H~g~~~ 55 (94)
.+..+....+..|-+|+|+|++=
T Consensus 61 ~~~~Ii~~A~~~~~dAihPGyGF 83 (104)
T 1ulz_A 61 NKQRIINLALEVGADAIHPGYGF 83 (104)
T ss_dssp CHHHHHHHHHHTTCCEEECCSST
T ss_pred HHHHHHHHHHHCCCCEEECCHHH
T ss_conf 28889999998199999268877
No 11
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1-124)
Probab=21.58 E-value=58 Score=14.42 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999731320688889
Q gi|254781182|r 33 EIFEWSNFVRIEGNKAVHEGQSS 55 (94)
Q Consensus 33 ~i~~~~~~~R~~gN~a~H~g~~~ 55 (94)
.+..+....+..|-+|+|+|++=
T Consensus 81 ~~~~Ii~~A~~~g~~AihPGyGf 103 (124)
T 2qf7_A 81 SIDEVIRVAKLSGADAIHPGYGL 103 (124)
T ss_dssp CHHHHHHHHHHHTCSEEECCSST
T ss_pred CHHHHHHHHHHHCCCEEECCCCH
T ss_conf 99999999999790999888443
Done!