Query gi|254781182|ref|YP_003065595.1| hypothetical protein CLIBASIA_05445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 102 out of 125
Neff 4.9
Searched_HMMs 23785
Date Wed Jun 1 01:36:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781182.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hkt_A Putative transcriptiona 95.0 0.036 1.5E-06 32.2 5.3 52 12-63 65-119 (172)
2 3brj_A Mannitol operon repress 94.9 0.031 1.3E-06 32.6 4.7 58 12-69 65-125 (175)
3 1ylm_A Hypothetical protein BS 82.0 2.8 0.00012 21.2 6.9 48 12-59 63-111 (144)
4 1o3u_A Conserved hypothetical 79.6 3.4 0.00014 20.7 5.5 64 11-74 57-129 (135)
5 1wwp_A Hypothetical protein TT 69.3 6.2 0.00026 19.2 8.2 54 13-68 52-105 (119)
6 2hsb_A Hypothetical UPF0332 pr 62.5 8.5 0.00036 18.4 6.2 46 30-75 73-120 (126)
7 1jog_A Hypothetical protein HI 62.2 8.6 0.00036 18.4 8.2 56 13-72 76-131 (146)
8 1ufb_A TT1696 protein; structu 59.9 9.5 0.0004 18.1 5.6 64 10-73 51-123 (127)
9 1wty_A Hypothetical protein TT 55.2 11 0.00048 17.7 5.8 51 13-67 52-102 (119)
10 1avy_A Fibritin, gpwac M; coil 14.1 61 0.0026 13.4 1.5 19 16-34 33-51 (74)
No 1
>2hkt_A Putative transcriptional regulator; structural genomics, APC27974, YGGD, mannitol operon repressor, MTLR, shigella flexneri 2A 2457T, PSI-2; 2.50A {Shigella flexneri} PDB: 3c8g_D* 3c8g_A* 3c8g_B*
Probab=94.99 E-value=0.036 Score=32.19 Aligned_cols=52 Identities=2% Similarity=-0.140 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHH
Q ss_conf 544889999999998689998999999999997313206888---8989999999
Q gi|254781182|r 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECL 63 (94)
Q Consensus 12 ~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll 63 (94)
-+-|+++-||+.++.=|+|++....-++.+|...|..+|.++ |+-+.....+
T Consensus 65 GPLg~~svRikL~y~LG~Is~~~y~Di~~~~klrn~~~h~~~~~~F~dd~i~~~i 119 (172)
T 2hkt_A 65 GPLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLNEQDETPGFADDITWDFI 119 (172)
T ss_dssp STTCSHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 9823799999999991888889998799999999998448767897888999999
No 2
>3brj_A Mannitol operon repressor; APC85967.1, MTLR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.75A {Vibrio parahaemolyticus rimd 2210633} SCOP: a.285.1.1
Probab=94.89 E-value=0.031 Score=32.55 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHH
Q ss_conf 544889999999998689998999999999997313206888---8989999999999999
Q gi|254781182|r 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---SSIEESDECLEFVNLF 69 (94)
Q Consensus 12 ~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---~~~edA~~ll~f~~~i 69 (94)
-+-|+++-||+.++.=|+|++....-++.+|...|..+|.++ |+-+.....+.=++.+
T Consensus 65 GPLg~~svRikL~y~LGlIs~~~y~Di~~~~kiRn~~~h~~~~~~F~dd~i~~~i~~L~~v 125 (175)
T 3brj_A 65 GPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLV 125 (175)
T ss_dssp STTCSHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHTCSSCCCTTSHHHHHHHTTSHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9823799999999990898889998699999999998348767896787999999873776
No 3
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=81.98 E-value=2.8 Score=21.22 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHH
Q ss_conf 54488999999999868999899999999999731320688-8898999
Q gi|254781182|r 12 EKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG-QSSIEES 59 (94)
Q Consensus 12 ~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g-~~~~edA 59 (94)
+.-+|-.|-++.|.+.|+|+++..+-+-.+--.+|--||.. ..+.+..
T Consensus 63 ~~P~~y~d~~~~L~e~gii~~~~~~~l~~~~g~RN~LvH~Y~~id~~~v 111 (144)
T 1ylm_A 63 RDPGSYDDIMDILVDEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGEL 111 (144)
T ss_dssp CCCSSGGGHHHHHHHTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9975699999999887997879999999999887685102355679999
No 4
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=79.55 E-value=3.4 Score=20.73 Aligned_cols=64 Identities=11% Similarity=-0.060 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6544889999999998689998999999999997313206888---------898999999999999999998
Q gi|254781182|r 11 FEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQ---------SSIEESDECLEFVNLFCDIVF 74 (94)
Q Consensus 11 ~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~---------~~~edA~~ll~f~~~il~~~~ 74 (94)
.|+.-++...+..|...+-.+..+.+.+..+....-.+-+++. ++.++|..++..++.|++++=
T Consensus 57 ~pktH~l~~L~~~l~~~~~~~~~~~~~l~~L~~~~i~~RYp~~~~~~~P~~~~~~~~Ae~~l~~Ae~il~~v~ 129 (135)
T 1o3u_A 57 QAWGYSVPDFLGELSSRFEIPEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCE 129 (135)
T ss_dssp CCCCSSHHHHHHHHTTTSCCCHHHHHHHHHHHSCC------CCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9977779999999998666866899999999987660579874456785356999999999999999999999
No 5
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=69.32 E-value=6.2 Score=19.18 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 44889999999998689998999999999997313206888898999999999999
Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNL 68 (94)
Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~~~ 68 (94)
.+.+.-+-++.+...|+|+..-.+..-..+..+|..+|.. +.+.|..++..+..
T Consensus 52 ~~~spr~~~r~a~~~glI~d~~~~~w~~ml~~RN~tsH~Y--de~~a~~i~~~i~~ 105 (119)
T 1wwp_A 52 EGASPKGVIRLAREVGLLRDEEARLALGMVDDRSLTVHTY--NEPLARAIFRRLPD 105 (119)
T ss_dssp CCCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHGGGTT--SHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHH
T ss_conf 7789599999999878818742889999999817014216--78989999999999
No 6
>2hsb_A Hypothetical UPF0332 protein AF0298; NP_069135.1, hypothetical protein, structural genomics, PSI- 2, protein structure initiative; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=62.48 E-value=8.5 Score=18.40 Aligned_cols=46 Identities=7% Similarity=-0.128 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999731320688--88989999999999999999986
Q gi|254781182|r 30 IIEEIFEWSNFVRIEGNKAVHEG--QSSIEESDECLEFVNLFCDIVFT 75 (94)
Q Consensus 30 I~~~i~~~~~~~R~~gN~a~H~g--~~~~edA~~ll~f~~~il~~~~t 75 (94)
+.......+..++...+.+-++. .++.++|..+++....+++++=.
T Consensus 73 ~~~~~~~~l~~~~~~R~~a~y~~~~~~s~eeae~~i~~A~~~v~~v~~ 120 (126)
T 2hsb_A 73 LSDDDCSKLSRAFDLREESDYGIYKEVSKDLAIKILKDAEIFVQKAKN 120 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 019999998999986424520553578999999999999999999999
No 7
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=62.15 E-value=8.6 Score=18.36 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 448899999999986899989999999999973132068888989999999999999999
Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVNLFCDI 72 (94)
Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~~~il~~ 72 (94)
.+.+.-+-++.....|+|+. ...|+. .+..+|..+|.. +.+.|..++..+..++..
T Consensus 76 ~~~spr~~~r~A~~~glI~d-~e~W~~-~~~~RN~tsH~Y--de~~a~~i~~~i~~~~~~ 131 (146)
T 1jog_A 76 GAYGFKDILREALRFGLIGD-MSKWVA-YRDMRNITSHTY--DQEKAMAVYAQIDDFLIE 131 (146)
T ss_dssp TSCCHHHHHHHHHHTTSCSC-HHHHHH-HHHHHTTGGGTT--SHHHHHHHHHTHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCC-HHHHHH-HHHHHCHHHHHC--CHHHHHHHHHHHHHHHHH
T ss_conf 65679999999998489898-999999-999956211207--899999999999999999
No 8
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=59.89 E-value=9.5 Score=18.12 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9654488999999999868999899999999999731320688---------889899999999999999999
Q gi|254781182|r 10 NFEKCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEG---------QSSIEESDECLEFVNLFCDIV 73 (94)
Q Consensus 10 ~~~k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g---------~~~~edA~~ll~f~~~il~~~ 73 (94)
..|+.-++...+..|...+-.+..+.+.+..+....-.+-.++ ..+.++|..+++.++.|+.++
T Consensus 51 ~~pk~H~l~~l~~~l~~~~~~~~~~~~~l~~L~~~~~~~RYp~~~~~~~p~~~~~~e~ae~~i~~a~~il~~v 123 (127)
T 1ufb_A 51 QVAWGHSILDLLADLPEDVDVPEDLVEAAKVLDKYYIPTRYPDAHPAGPAARHYTRLEAEEALDLAQKILAFV 123 (127)
T ss_dssp CCCCSSCHHHHHHTSCTTSCCCHHHHHHHHHHHTTSSTTTCGGGSSSSCGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9998735999999898846472999999999999888627998756677545699999999999999999999
No 9
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus HB8} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=55.18 E-value=11 Score=17.65 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 4488999999999868999899999999999731320688889899999999999
Q gi|254781182|r 13 KCGMLSDRTRYLKQHNLIIEEIFEWSNFVRIEGNKAVHEGQSSIEESDECLEFVN 67 (94)
Q Consensus 13 k~g~l~dri~~L~~~g~I~~~i~~~~~~~R~~gN~a~H~g~~~~edA~~ll~f~~ 67 (94)
.+++.-+-++..+..|+|+.. ..|+..+.. +|..+|... .+-|..++..+.
T Consensus 52 ~~~spr~~~reA~~~glI~d~-~~W~~~~~~-RN~tsH~Yd--e~~A~~i~~~i~ 102 (119)
T 1wty_A 52 EARSPRAAIRGAFQVGLLPED-PFWLEMLEL-RNLTNHTYD--EALAERIYAELP 102 (119)
T ss_dssp CCSSHHHHHHHHHHHTSSCCC-HHHHHHHHH-HHHGGGTTS--HHHHHHHHTTHH
T ss_pred CCCCHHHHHHHHHHCCCCCCH-HHHHHHHHH-HCHHHHHCC--HHHHHHHHHHHH
T ss_conf 658859999999887888988-999999999-561105268--999999999999
No 10
>1avy_A Fibritin, gpwac M; coiled coil, bacteriophage T4, structural protein, chaperone, bacteriophage assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=14.13 E-value=61 Score=13.44 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHCCCCCHHH
Q ss_conf 8999999999868999899
Q gi|254781182|r 16 MLSDRTRYLKQHNLIIEEI 34 (94)
Q Consensus 16 ~l~dri~~L~~~g~I~~~i 34 (94)
++...|..|.+.|+||+.-
T Consensus 33 s~~~dvqalqEAGYIpeAP 51 (74)
T 1avy_A 33 SLQGDVQALQEAGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCC
T ss_conf 8888899999838887798
Done!