Query gi|254781183|ref|YP_003065596.1| hypothetical protein CLIBASIA_05450 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:39:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781183.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjla2 g.39.1.13 (A:111-151) 18.4 20 0.0014 16.0 1.1 21 46-66 2-22 (41)
2 d2j9ub1 g.41.11.1 (B:115-161) 17.7 20 0.0014 16.0 1.0 26 25-54 10-35 (47)
3 d1lpba2 g.3.10.1 (A:45-90) (Pr 14.8 23 0.0017 15.6 0.8 12 17-28 34-45 (46)
4 d2i9fa1 d.254.1.1 (A:50-105) A 10.2 38 0.0028 14.4 0.7 12 61-72 44-55 (56)
5 d1n1fa_ a.26.1.3 (A:) Interleu 8.9 62 0.0045 13.2 1.4 33 58-93 122-154 (156)
6 d1x68a2 g.39.1.3 (A:37-70) Fou 8.3 50 0.0036 13.8 0.7 13 6-18 16-28 (34)
7 d2jrxa1 a.284.1.1 (A:1-75) Unc 7.9 60 0.0044 13.3 1.0 27 52-79 30-56 (75)
8 d1lqsl_ a.26.1.3 (L:) Interleu 7.0 66 0.0048 13.1 0.8 31 58-92 112-142 (142)
9 d2juza1 a.284.1.1 (A:1-72) Unc 6.4 59 0.0043 13.4 0.3 28 51-79 29-56 (72)
10 d3dlqi1 a.26.1.3 (I:41-179) In 6.3 72 0.0052 12.9 0.7 12 63-74 115-126 (139)
No 1
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=18.39 E-value=20 Score=16.02 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=14.9
Q ss_pred EEECCCCCHHHHHHHHHCCHH
Q ss_conf 542366640256676535733
Q gi|254781183|r 46 GICENCGDLSLMAFQKWLPTK 66 (94)
Q Consensus 46 gicencgdlslmafqkwlptk 66 (94)
|+|+.||+.--.+=.+-+|+-
T Consensus 2 G~C~~Cg~~I~~~RL~a~P~a 22 (41)
T d1tjla2 2 GYCESCGVEIGIRRLEARPTA 22 (41)
T ss_dssp SBCSSSSCBCCHHHHHHCTTC
T ss_pred CCHHHCCCCCCHHHHHCCCCC
T ss_conf 064048390579998469985
No 2
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=17.66 E-value=20 Score=16.04 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=15.4
Q ss_pred EEECCCCCHHHCCCCCCCEEEEEECCCCCH
Q ss_conf 020255502212575862355542366640
Q gi|254781183|r 25 MCHAGVSKEEKAGNMHPTYAVGICENCGDL 54 (94)
Q Consensus 25 mchagvskeekagnmhptyavgicencgdl 54 (94)
|-+--+.+|-...++++ -+|+|||--
T Consensus 10 m~~Ne~~~e~~~n~~~~----p~C~nCGV~ 35 (47)
T d2j9ub1 10 MVSNETQGEFTKDTLPT----PICINCGVP 35 (47)
T ss_dssp CCEEEESSCCCTTCSSC----CBCTTTCCB
T ss_pred EEECCCEEEECCCCCCC----CCCCCCCCC
T ss_conf 66410012560477788----863445875
No 3
>d1lpba2 g.3.10.1 (A:45-90) (Pro)colipase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.79 E-value=23 Score=15.65 Aligned_cols=12 Identities=50% Similarity=1.096 Sum_probs=7.3
Q ss_pred CCCCCCCCEEEC
Q ss_conf 356898420202
Q gi|254781183|r 17 SQKNPNYGMCHA 28 (94)
Q Consensus 17 sqknpnygmcha 28 (94)
|-.|.|||.||.
T Consensus 34 sItNtn~GiC~d 45 (46)
T d1lpba2 34 SITNTNFGICHN 45 (46)
T ss_dssp HHHTCCEEEEEE
T ss_pred EEECCCCEEEEC
T ss_conf 774476207703
No 4
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=10.15 E-value=38 Score=14.41 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=9.3
Q ss_pred HHCCHHHHHHHH
Q ss_conf 535733556764
Q gi|254781183|r 61 KWLPTKDINKAI 72 (94)
Q Consensus 61 kwlptkdinkai 72 (94)
.|.|||.|...+
T Consensus 44 swvptkqiqrkv 55 (56)
T d2i9fa1 44 SWVPTKQIQRKV 55 (56)
T ss_dssp EECCCHHHHHHH
T ss_pred EEEEHHHHHHHC
T ss_conf 962778956412
No 5
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.90 E-value=62 Score=13.25 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=22.2
Q ss_pred HHHHHCCHHHHHHHHCCCCHHHHHCCCHHHHHHHCC
Q ss_conf 676535733556764030013442767566422036
Q gi|254781183|r 58 AFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSKA 93 (94)
Q Consensus 58 afqkwlptkdinkaigesqtkeeyfpsyeefylska 93 (94)
.|++--+.+.+.|||||-..- |.--|+||-+.+
T Consensus 122 ~~~kl~~~~g~~KAiGElDiL---l~~iEkf~~~~~ 154 (156)
T d1n1fa_ 122 NYDQLEVHAAAIKSLGELDVF---LAWINKNHEVMS 154 (156)
T ss_dssp HHHHSCHHHHHHHHHHTHHHH---HHHHHHHSCCBC
T ss_pred HHHHHCCHHHHHHHHHHHHHH---HHHHHHHCCCCC
T ss_conf 999735167889999899999---999999702345
No 6
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.30 E-value=50 Score=13.77 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=8.6
Q ss_pred CCCEEEEEEHHCC
Q ss_conf 3300001120135
Q gi|254781183|r 6 TSKLSIFCRHCSQ 18 (94)
Q Consensus 6 tsklsifcrhcsq 18 (94)
|..-.||||.|..
T Consensus 16 tq~~~i~c~~cgs 28 (34)
T d1x68a2 16 TQNKEIFCQKCGS 28 (34)
T ss_dssp EETTEEEETTTTC
T ss_pred ECCCCEEEHHCCC
T ss_conf 2157577011077
No 7
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=60 Score=13.31 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHCCHHHHHHHHCCCCHHH
Q ss_conf 6402566765357335567640300134
Q gi|254781183|r 52 GDLSLMAFQKWLPTKDINKAIGESQTKE 79 (94)
Q Consensus 52 gdlslmafqkwlptkdinkaigesqtke 79 (94)
-|||||+.-. .-|.-||.-+.++|.+.
T Consensus 30 ~DLSLMvLGN-~vTniln~~V~~~qR~~ 56 (75)
T d2jrxa1 30 TDLSLMVLGN-MVTNLINTSIAPAQRQA 56 (75)
T ss_dssp HHHHHHHHHH-HHHHHHHHHSCTTSHHH
T ss_pred CCHHHHHHHH-HHHHHHHHCCCHHHHHH
T ss_conf 3059999989-99999983089999999
No 8
>d1lqsl_ a.26.1.3 (L:) Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) {Human herpesvirus 5 [TaxId: 10359]}
Probab=6.95 E-value=66 Score=13.10 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=18.7
Q ss_pred HHHHHCCHHHHHHHHCCCCHHHHHCCCHHHHHHHC
Q ss_conf 67653573355676403001344276756642203
Q gi|254781183|r 58 AFQKWLPTKDINKAIGESQTKEEYFPSYEEFYLSK 92 (94)
Q Consensus 58 afqkwlptkdinkaigesqtkeeyfpsyeefylsk 92 (94)
+|.+ +..+.+.|||||-.. .|.--|+|+.||
T Consensus 112 ~~~k-l~~kg~~KAiGElDI---Ll~wiE~yl~~k 142 (142)
T d1lqsl_ 112 EAER-KSDNGTRKGLSELDT---LFSRLEEYLHSR 142 (142)
T ss_dssp HTTS-STTTTHHHHHHTHHH---HHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHHHHHH---HHHHHHHHHCCC
T ss_conf 9998-876079999989999---999999985159
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=6.38 E-value=59 Score=13.36 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHCCCCHHH
Q ss_conf 66402566765357335567640300134
Q gi|254781183|r 51 CGDLSLMAFQKWLPTKDINKAIGESQTKE 79 (94)
Q Consensus 51 cgdlslmafqkwlptkdinkaigesqtke 79 (94)
--|||||+.-.- -|.-||.-+.++|.+.
T Consensus 29 p~DLSLMvLGN~-vTniln~~V~~~qR~~ 56 (72)
T d2juza1 29 PVDLSLIALGNM-ASNLLTTSVPQTQCEA 56 (72)
T ss_dssp CSHHHHHHHHHH-HHHHHTTSSCSTTHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHCCHHHHHH
T ss_conf 840599999799-9999983189999999
No 10
>d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=72 Score=12.90 Aligned_cols=12 Identities=50% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCC
Q ss_conf 573355676403
Q gi|254781183|r 63 LPTKDINKAIGE 74 (94)
Q Consensus 63 lptkdinkaige 74 (94)
|..+.+.|||||
T Consensus 115 L~e~g~~KAiGE 126 (139)
T d3dlqi1 115 LGESGEIKAIGE 126 (139)
T ss_dssp HTHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 886167999988
Done!