Query gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 23:16:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781184.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1fzd_A Fibrinogen-420; blood 15.9 58 0.0017 14.8 1.0 10 58-67 6-15 (201)
2 >1evs_A Oncostatin M; 4-helix 14.8 22 0.00065 17.1 -1.4 17 59-75 157-178 (187)
3 >2dar_A PDZ and LIM domain pro 13.5 74 0.0022 14.2 1.1 22 53-77 9-30 (34)
4 >3bs1_A Accessory gene regulat 12.3 52 0.0015 15.1 -0.0 15 59-73 9-23 (29)
5 >1svb_A TICK-borne encephaliti 11.4 66 0.0019 14.5 0.3 20 37-56 51-71 (93)
6 >2hg0_A Envelope glycoprotein; 10.5 84 0.0025 13.9 0.5 21 37-57 51-75 (108)
7 >2p5p_A Genome polyprotein; en 9.4 94 0.0028 13.6 0.5 22 36-57 52-77 (117)
8 >1p58_A Major envelope protein 8.0 1.5E+02 0.0044 12.6 1.0 21 36-56 49-71 (100)
9 >1ztx_E Envelope protein; FAB, 7.9 1E+02 0.003 13.4 0.1 22 36-57 57-82 (108)
10 >1xi4_A Clathrin heavy chain; 7.7 1.5E+02 0.0043 12.6 0.9 10 2-11 65-74 (90)
No 1
>>1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, glycosylated protein; HET: NAG MAN NDG; 2.10A {Homo sapiens} (A:)
Probab=15.93 E-value=58 Score=14.81 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=5.8
Q ss_pred EEEEEEEECH
Q ss_conf 3433653000
Q gi|254781184|r 58 KWIVFQRRAE 67 (78)
Q Consensus 58 kwivfqrrae 67 (78)
-|+|+|||-.
T Consensus 6 GWtVIQrR~d 15 (201)
T 1fzd_A 6 GWLLIQQRMD 15 (201)
T ss_dssp CCEEEEEESS
T ss_pred CEEEEEEECC
T ss_conf 1689986305
No 2
>>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} (A:)
Probab=14.78 E-value=22 Score=17.10 Aligned_cols=17 Identities=47% Similarity=0.866 Sum_probs=13.4
Q ss_pred EEEEEEECHHH-----HHHHHC
Q ss_conf 43365300002-----322300
Q gi|254781184|r 59 WIVFQRRAENC-----YARFIG 75 (78)
Q Consensus 59 wivfqrraenc-----yarfig 75 (78)
--+||++-|+| |.||.+
T Consensus 157 sd~FQ~kle~CrFL~GYHRFM~ 178 (187)
T 1evs_A 157 SDAFQRKLEGCRFLHGYHRFMH 178 (187)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 6899988545604788999999
No 3
>>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:57-90)
Probab=13.53 E-value=74 Score=14.22 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=16.1
Q ss_pred HHEEEEEEEEEEECHHHHHHHHCCC
Q ss_conf 1012134336530000232230036
Q gi|254781184|r 53 YFVERKWIVFQRRAENCYARFIGIG 77 (78)
Q Consensus 53 yfverkwivfqrraencyarfigig 77 (78)
-|||.|--++ -|.||.+|..-|
T Consensus 9 gFVEEkg~lY---Ce~Cye~ffA~~ 30 (34)
T 2dar_A 9 GFVEEKGALY---CELCYEKFFASG 30 (34)
T ss_dssp CBEESSSCEE---CHHHHHHHTSCC
T ss_pred EEEEECCEEE---CHHHHHHHHCCC
T ss_conf 4371799783---877799870679
No 4
>>3bs1_A Accessory gene regulator protein A; lyttr, AGRA, response regulator, DNA binding domain; HET: DNA BRU; 1.60A {Staphylococcus aureus} (A:75-103)
Probab=12.33 E-value=52 Score=15.08 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=11.6
Q ss_pred EEEEEEECHHHHHHH
Q ss_conf 433653000023223
Q gi|254781184|r 59 WIVFQRRAENCYARF 73 (78)
Q Consensus 59 wivfqrraencyarf 73 (78)
-||+-+..|+|||..
T Consensus 9 rivyfkn~e~cyasv 23 (29)
T 3bs1_A 9 RIVYFKNKEHCYASV 23 (29)
T ss_dssp TEEEETTSCEEECCT
T ss_pred CEEEEECCCEEEEEC
T ss_conf 499980996999981
No 5
>>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET: NAG; 1.90A {Tick-borne encephalitis virus} (A:303-395)
Probab=11.43 E-value=66 Score=14.50 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=14.8
Q ss_pred EEEEEEECCCCHHHHH-HHEE
Q ss_conf 7325642184201211-1012
Q gi|254781184|r 37 IRGRIIRENPIVKKTA-YFVE 56 (78)
Q Consensus 37 irgriirenpivkkta-yfve 56 (78)
.+||+|.-||++.+.. -|+|
T Consensus 51 ~~GrLIT~NPiv~~~~~v~IE 71 (93)
T 1svb_A 51 NVAMLITPNPTIENNGGGFIE 71 (93)
T ss_dssp CCCEESSSSCEEETTEECEEE
T ss_pred CEEEEEECCCEEECCCCEEEE
T ss_conf 245799569548648867999
No 6
>>2hg0_A Envelope glycoprotein; virus/viral protein; HET: NDG FUL; 3.00A {West nile virus} PDB: 2i69_A* 2of6_A (A:301-408)
Probab=10.48 E-value=84 Score=13.92 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=14.8
Q ss_pred EEEEEEECCCCHH----HHHHHEEE
Q ss_conf 7325642184201----21110121
Q gi|254781184|r 37 IRGRIIRENPIVK----KTAYFVER 57 (78)
Q Consensus 37 irgriirenpivk----ktayfver 57 (78)
..||+|.-||+|. ...-|+|-
T Consensus 51 ~~GrLIT~NPivt~~~~~~~V~IE~ 75 (108)
T 2hg0_A 51 PVGRLVTVNPFVSVATANAKVLIEL 75 (108)
T ss_dssp CCBEESSCSCBCCCSSSSCEEEEEE
T ss_pred EEEEEEECCCEEECCCCCCEEEEEE
T ss_conf 3568995797056156897699999
No 7
>>2p5p_A Genome polyprotein; envelope protein, viral protein; 2.80A {West nile virus} (A:)
Probab=9.38 E-value=94 Score=13.64 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=15.6
Q ss_pred EEEEEEEECCCCHH----HHHHHEEE
Q ss_conf 97325642184201----21110121
Q gi|254781184|r 36 SIRGRIIRENPIVK----KTAYFVER 57 (78)
Q Consensus 36 sirgriirenpivk----ktayfver 57 (78)
...||+|--||+|. ...-|+|-
T Consensus 52 ~~vGrLIT~NPiv~~~~~~~~v~IE~ 77 (117)
T 2p5p_A 52 TPVGRLVTVNPFVSVATANAKVLIEL 77 (117)
T ss_dssp EECSEESSCSCEECCSSTTCCEEEEE
T ss_pred CEEEEEEECCCEEECCCCCCEEEEEE
T ss_conf 31447996797167056897289998
No 8
>>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from TICK-borne encephalitis virus, membrane protein M, cryo-EM; 9.50A {Dengue virus 2 puerto rico} (A:298-397)
Probab=7.99 E-value=1.5e+02 Score=12.57 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=14.9
Q ss_pred EEEEEEEECCCCHHHH--HHHEE
Q ss_conf 9732564218420121--11012
Q gi|254781184|r 36 SIRGRIIRENPIVKKT--AYFVE 56 (78)
Q Consensus 36 sirgriirenpivkkt--ayfve 56 (78)
...||+|--||+|-.+ .-|+|
T Consensus 49 ~~vGrLIT~NPiv~~~~~~v~IE 71 (100)
T 1p58_A 49 HVLGRLITVNPIVTEKDSPVNIE 71 (100)
T ss_pred CEEEEEEECCCEEECCCCCEEEE
T ss_conf 41368993796577089967999
No 9
>>1ztx_E Envelope protein; FAB, neutralizing, virus, envelope, viral protein/immune system complex; 2.50A {West nile virus} (E:)
Probab=7.86 E-value=1e+02 Score=13.43 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=15.4
Q ss_pred EEEEEEEECCCCHH----HHHHHEEE
Q ss_conf 97325642184201----21110121
Q gi|254781184|r 36 SIRGRIIRENPIVK----KTAYFVER 57 (78)
Q Consensus 36 sirgriirenpivk----ktayfver 57 (78)
...||+|.-||+|. ...-|+|-
T Consensus 57 ~~~GrLIT~NPiv~~~~~~~~v~IE~ 82 (108)
T 1ztx_E 57 TPVGRLVTVNPFVSVATANAKVLIEL 82 (108)
T ss_dssp EECSEESSSSCEECCSSSSEEEEEEE
T ss_pred CEEEEEEECCCEEEECCCCCEEEEEE
T ss_conf 22568996797177056897489998
No 10
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1400-1489)
Probab=7.68 E-value=1.5e+02 Score=12.58 Aligned_cols=10 Identities=60% Similarity=1.059 Sum_probs=0.0
Q ss_pred CHHHHHHHHH
Q ss_conf 3357888999
Q gi|254781184|r 2 NEAINHLFIN 11 (78)
Q Consensus 2 neainhlfin 11 (78)
|||.|.|+|.
T Consensus 65 NeAln~L~iE 74 (90)
T 1xi4_A 65 NESLNNLFIT 74 (90)
T ss_pred HHHHHHHHHH
T ss_conf 9999998750
Done!