Query gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:55:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781184.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fib_A Fibrinogen; fibrinogen, 17.9 37 0.0016 15.0 1.2 11 57-67 47-57 (269)
2 1jc9_A Techylectin-5A; fibrino 17.9 37 0.0016 15.0 1.2 10 57-66 87-96 (269)
3 2d39_A Ficolin-1; innate immun 16.7 41 0.0017 14.8 1.2 12 56-67 40-51 (237)
4 1fzc_C Fibrin; blood coagulati 16.5 42 0.0018 14.7 1.2 11 57-67 102-112 (319)
5 2j5z_A Ficolin-3; hydroxylatio 16.1 44 0.0018 14.6 1.2 12 56-67 49-60 (221)
6 2wnp_F Ficolin-1; glycoprotein 14.7 50 0.0021 14.3 1.2 11 57-67 44-54 (217)
7 1lwu_B Fibrinogen beta chain; 14.1 53 0.0022 14.2 1.2 11 57-67 112-122 (323)
8 1fzc_B Fibrin; blood coagulati 14.0 54 0.0023 14.1 1.2 11 57-67 114-124 (328)
9 1lwu_C Fibrinogen gamma chain; 13.8 55 0.0023 14.1 1.2 12 56-67 110-121 (323)
10 1z3u_A Angiopoietin-2, ANG-2; 13.4 57 0.0024 14.0 1.2 7 59-65 43-49 (217)
No 1
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A
Probab=17.95 E-value=37 Score=15.02 Aligned_cols=11 Identities=45% Similarity=1.054 Sum_probs=8.9
Q ss_pred EEEEEEEEECH
Q ss_conf 13433653000
Q gi|254781184|r 57 RKWIVFQRRAE 67 (78)
Q Consensus 57 rkwivfqrrae 67 (78)
.-|+|+|||-.
T Consensus 47 GGWTVIQRR~d 57 (269)
T 2fib_A 47 NGWTVFQKRLD 57 (269)
T ss_dssp CEEEEEEEESS
T ss_pred CCEEEEEECCC
T ss_conf 86289998868
No 2
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Probab=17.94 E-value=37 Score=15.02 Aligned_cols=10 Identities=50% Similarity=0.950 Sum_probs=8.7
Q ss_pred EEEEEEEEEC
Q ss_conf 1343365300
Q gi|254781184|r 57 RKWIVFQRRA 66 (78)
Q Consensus 57 rkwivfqrra 66 (78)
.-|.|+|||.
T Consensus 87 GGWTVIQrR~ 96 (269)
T 1jc9_A 87 GGWTVIQRRG 96 (269)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEEC
T ss_conf 9879999600
No 3
>2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system; 1.90A {Homo sapiens}
Probab=16.70 E-value=41 Score=14.76 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=9.6
Q ss_pred EEEEEEEEEECH
Q ss_conf 213433653000
Q gi|254781184|r 56 ERKWIVFQRRAE 67 (78)
Q Consensus 56 erkwivfqrrae 67 (78)
..-|.|+|||-.
T Consensus 40 GGGWtVIQrR~d 51 (237)
T 2d39_A 40 GGGWTVFQRRMD 51 (237)
T ss_dssp GSCEEEEEEESS
T ss_pred CCCEEEEEECCC
T ss_conf 997799998448
No 4
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* 1re4_C* 2ffd_C* ...
Probab=16.52 E-value=42 Score=14.72 Aligned_cols=11 Identities=45% Similarity=1.054 Sum_probs=8.8
Q ss_pred EEEEEEEEECH
Q ss_conf 13433653000
Q gi|254781184|r 57 RKWIVFQRRAE 67 (78)
Q Consensus 57 rkwivfqrrae 67 (78)
.-|+|+|||-.
T Consensus 102 GGWTVIQrR~d 112 (319)
T 1fzc_C 102 NGWTVFQKRLD 112 (319)
T ss_dssp CEEEEEEEESS
T ss_pred CCEEEEEEECC
T ss_conf 87089999237
No 5
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen, immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens} PDB: 2j60_A* 2j64_A
Probab=16.07 E-value=44 Score=14.62 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=9.7
Q ss_pred EEEEEEEEEECH
Q ss_conf 213433653000
Q gi|254781184|r 56 ERKWIVFQRRAE 67 (78)
Q Consensus 56 erkwivfqrrae 67 (78)
..-|.|+|||-.
T Consensus 49 GgGWtVIQrR~d 60 (221)
T 2j5z_A 49 GGGWLVFQRRQD 60 (221)
T ss_dssp GSCEEEEEEESS
T ss_pred CCCEEEEEEECC
T ss_conf 985345563127
No 6
>2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain, carbohydrate recognition, lectin, immune system; 1.21A {Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F* 2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A* 2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A*
Probab=14.70 E-value=50 Score=14.30 Aligned_cols=11 Identities=55% Similarity=1.090 Sum_probs=9.0
Q ss_pred EEEEEEEEECH
Q ss_conf 13433653000
Q gi|254781184|r 57 RKWIVFQRRAE 67 (78)
Q Consensus 57 rkwivfqrrae 67 (78)
.-|.|+|||-.
T Consensus 44 GGWtVIQrR~d 54 (217)
T 2wnp_F 44 GGWTVFQRRMD 54 (217)
T ss_dssp SCEEEEEEESS
T ss_pred CCEEEEEEECC
T ss_conf 97789998567
No 7
>1lwu_B Fibrinogen beta chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=14.10 E-value=53 Score=14.16 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=9.0
Q ss_pred EEEEEEEEECH
Q ss_conf 13433653000
Q gi|254781184|r 57 RKWIVFQRRAE 67 (78)
Q Consensus 57 rkwivfqrrae 67 (78)
.-|.|+|||-.
T Consensus 112 gGWTVIQrR~d 122 (323)
T 1lwu_B 112 GGWTVVQNRVD 122 (323)
T ss_dssp SCEEEEEEESS
T ss_pred CCEEEEEEECC
T ss_conf 97699998368
No 8
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* 2ffd_B* 1rf1_B* ...
Probab=13.97 E-value=54 Score=14.13 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=9.1
Q ss_pred EEEEEEEEECH
Q ss_conf 13433653000
Q gi|254781184|r 57 RKWIVFQRRAE 67 (78)
Q Consensus 57 rkwivfqrrae 67 (78)
.-|.|+|||-.
T Consensus 114 GGWTVIQRR~d 124 (328)
T 1fzc_B 114 GGWTVIQNRQD 124 (328)
T ss_dssp SCEEEEEEESS
T ss_pred CCEEEEEECCC
T ss_conf 87589996477
No 9
>1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=13.76 E-value=55 Score=14.08 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=9.6
Q ss_pred EEEEEEEEEECH
Q ss_conf 213433653000
Q gi|254781184|r 56 ERKWIVFQRRAE 67 (78)
Q Consensus 56 erkwivfqrrae 67 (78)
..-|.|+|||-.
T Consensus 110 GgGWTVIQrR~d 121 (323)
T 1lwu_C 110 GNGWTVIQHRHD 121 (323)
T ss_dssp SCEEEEEEEESS
T ss_pred CCCEEEEEECCC
T ss_conf 984599998658
No 10
>1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular ligand, signaling protein; 2.25A {Homo sapiens} PDB: 1z3s_A 2gy7_A*
Probab=13.40 E-value=57 Score=13.99 Aligned_cols=7 Identities=57% Similarity=1.417 Sum_probs=0.0
Q ss_pred EEEEEEE
Q ss_conf 4336530
Q gi|254781184|r 59 WIVFQRR 65 (78)
Q Consensus 59 wivfqrr 65 (78)
|.|+|||
T Consensus 43 WtVIQrR 49 (217)
T 1z3u_A 43 WTIIQRR 49 (217)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 7899875
Done!