BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781184|ref|YP_003065597.1| hypothetical protein
CLIBASIA_05455 [Candidatus Liberibacter asiaticus str. psy62]
(78 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781184|ref|YP_003065597.1| hypothetical protein CLIBASIA_05455 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 78
Score = 157 bits (396), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MNEAINHLFINIFYPILWYTFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWI 60
MNEAINHLFINIFYPILWYTFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWI
Sbjct: 1 MNEAINHLFINIFYPILWYTFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWI 60
Query: 61 VFQRRAENCYARFIGIGE 78
VFQRRAENCYARFIGIGE
Sbjct: 61 VFQRRAENCYARFIGIGE 78
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 24.6 bits (52), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 32 SIMISIRGRIIRENPIVKKTAYFVERKWIVFQRRAENC 69
++M + + I+ +PI K+ F R W + ++R+ C
Sbjct: 405 AVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGC 442
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 21.6 bits (44), Expect = 2.9, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 20 TFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWIVFQR 64
+ PL + I +S + +RG +++ K RK +++++
Sbjct: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQ 163
>gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 21.6 bits (44), Expect = 3.0, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 20 TFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWIVFQR 64
+ PL + I +S + +RG +++ K RK +++++
Sbjct: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQ 163
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 21.6 bits (44), Expect = 3.0, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 20 TFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWIVFQR 64
+ PL + I +S + +RG +++ K RK +++++
Sbjct: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQ 163
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 21.2 bits (43), Expect = 3.3, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 20 TFPLMILISIQISIMISIRGRIIRENPIVKKTAYFVERKWIVFQR 64
+ PL + I +S + +RG +++ K RK +++++
Sbjct: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQ 163
>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Length = 723
Score = 21.2 bits (43), Expect = 3.6, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 45 NPIVKKTAYFVERK 58
+PIVKKT ++ RK
Sbjct: 710 DPIVKKTRWWKRRK 723
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 19.6 bits (39), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 11 NIFYPILWYTFPLMILISIQISIMISIRGRIIRENPIVKKTAY 53
++F+P+L P+ + +SI ++ S+ IR+ + + AY
Sbjct: 261 SVFWPMLSGLLPIFMCVSIGSMVLGSVVA--IRQKDLKRLMAY 301
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.335 0.148 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,691
Number of Sequences: 1233
Number of extensions: 1535
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 78
length of database: 328,796
effective HSP length: 48
effective length of query: 30
effective length of database: 269,612
effective search space: 8088360
effective search space used: 8088360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 31 (16.5 bits)