Query gi|254781185|ref|YP_003065598.1| hypothetical protein CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:36:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781185.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkla_ f.23.30.1 (A:) Oligosa 13.2 42 0.0031 14.3 1.7 12 6-17 8-19 (36)
2 d1au1a_ a.26.1.3 (A:) Interfer 6.0 99 0.0072 12.5 1.7 12 29-40 119-130 (166)
3 d2gvia1 d.81.3.1 (A:1-168) Unc 5.1 1.1E+02 0.0082 12.2 1.1 14 12-25 63-76 (168)
4 d2glza1 d.81.3.1 (A:3-151) Fwd 5.0 1.1E+02 0.0083 12.2 1.1 12 14-25 57-68 (149)
5 d1rh2a_ a.26.1.3 (A:) Interfer 4.3 1.3E+02 0.0094 11.9 2.2 10 31-40 113-122 (154)
6 d1l8wa_ a.154.1.1 (A:) Variabl 3.7 1.5E+02 0.011 11.6 1.3 13 27-39 14-26 (291)
7 d1b5la_ a.26.1.3 (A:) Interfer 3.5 1.5E+02 0.011 11.5 2.8 26 15-40 93-128 (164)
8 d1wo9a_ g.4.1.1 (A:) Protease 3.3 1.2E+02 0.0084 12.2 -0.0 12 19-30 2-13 (35)
9 d1rkia1 d.308.1.2 (A:1-98) Hyp 2.6 1.6E+02 0.012 11.4 0.0 7 34-40 58-64 (98)
10 d1sqga2 c.66.1.38 (A:145-428) 2.5 1.3E+02 0.0097 11.8 -0.5 23 16-38 226-248 (284)
No 1
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.19 E-value=42 Score=14.35 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 127999999999
Q gi|254781185|r 6 IGINIIFGLVLV 17 (42)
Q Consensus 6 iginiifglvlv 17 (42)
-|+-|+||.+..
T Consensus 8 n~~~i~fgi~mm 19 (36)
T d1rkla_ 8 NSLAITFGIVMM 19 (36)
T ss_dssp GHHHHHHHHHHH
T ss_pred CCEEEEHHHHHH
T ss_conf 847731357899
No 2
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.97 E-value=99 Score=12.50 Aligned_cols=12 Identities=17% Similarity=0.750 Sum_probs=8.7
Q ss_pred HCHHHHHHHHHH
Q ss_conf 024999999983
Q gi|254781185|r 29 NNSVKKYFNKLI 40 (42)
Q Consensus 29 nnsvkkyfnkli 40 (42)
.-.+|+||..+-
T Consensus 119 ~l~lk~YF~rI~ 130 (166)
T d1au1a_ 119 SLHLKRYYGRIL 130 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 279999998999
No 3
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.09 E-value=1.1e+02 Score=12.21 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=10.1
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999992374220
Q gi|254781185|r 12 FGLVLVLSGCSIGE 25 (42)
Q Consensus 12 fglvlvlsgcsige 25 (42)
-.-+-+++||++|.
T Consensus 63 ~Davq~ltGcT~Gk 76 (168)
T d2gvia1 63 NDGAQAATGCTYGK 76 (168)
T ss_dssp HHHHHHHHSCCTTT
T ss_pred HHHHHHHHCCCCCC
T ss_conf 75989985555268
No 4
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201) {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=5.00 E-value=1.1e+02 Score=12.17 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=8.8
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999992374220
Q gi|254781185|r 14 LVLVLSGCSIGE 25 (42)
Q Consensus 14 lvlvlsgcsige 25 (42)
-+-++.||++|.
T Consensus 57 avq~~tgcT~Gk 68 (149)
T d2glza1 57 AIQVLNKATIGR 68 (149)
T ss_dssp HHHHHTCCCTTT
T ss_pred HHHHHHCCCCCC
T ss_conf 999997887488
No 5
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.3e+02 Score=11.91 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q ss_conf 4999999983
Q gi|254781185|r 31 SVKKYFNKLI 40 (42)
Q Consensus 31 svkkyfnkli 40 (42)
.+|+||.++-
T Consensus 113 ~lk~YF~rI~ 122 (154)
T d1rh2a_ 113 AVRKYFQRIT 122 (154)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 6
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=3.71 E-value=1.5e+02 Score=11.63 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=8.6
Q ss_pred HHHCHHHHHHHHH
Q ss_conf 0002499999998
Q gi|254781185|r 27 KKNNSVKKYFNKL 39 (42)
Q Consensus 27 kknnsvkkyfnkl 39 (42)
.|-.-|.+||+++
T Consensus 14 tKKSdVg~yF~~i 26 (291)
T d1l8wa_ 14 PKKSDVKTYFTTV 26 (291)
T ss_dssp CBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 8378899999999
No 7
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=3.47 E-value=1.5e+02 Score=11.51 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHCCCCCCHH----------HHCHHHHHHHHHH
Q ss_conf 9999237422010----------0024999999983
Q gi|254781185|r 15 VLVLSGCSIGEQK----------KNNSVKKYFNKLI 40 (42)
Q Consensus 15 vlvlsgcsigeqk----------knnsvkkyfnkli 40 (42)
.--|..|-..+.. ..-.+|+||..+-
T Consensus 93 l~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~ 128 (164)
T d1b5la_ 93 LDHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIY 128 (164)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999989873564567677641579999999999
No 8
>d1wo9a_ g.4.1.1 (A:) Protease inhibitor SGTI {Desert locust (Schistocerca gregaria) [TaxId: 7010]}
Probab=3.33 E-value=1.2e+02 Score=12.16 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=8.8
Q ss_pred HCCCCCCHHHHC
Q ss_conf 237422010002
Q gi|254781185|r 19 SGCSIGEQKKNN 30 (42)
Q Consensus 19 sgcsigeqkknn 30 (42)
|.|.-||.||..
T Consensus 2 ~eCTPG~tKk~D 13 (35)
T d1wo9a_ 2 GECTPGQTKKQD 13 (35)
T ss_dssp CSCCTTCEEEET
T ss_pred CCCCCCCCCCCC
T ss_conf 856788510234
No 9
>d1rkia1 d.308.1.2 (A:1-98) Hypothetical protein PAE0736 {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=2.58 E-value=1.6e+02 Score=11.44 Aligned_cols=7 Identities=57% Similarity=1.260 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999983
Q gi|254781185|r 34 KYFNKLI 40 (42)
Q Consensus 34 kyfnkli 40 (42)
+||.||+
T Consensus 58 ~YFkkLv 64 (98)
T d1rkia1 58 HYFKKLV 64 (98)
T ss_dssp HHHHTTE
T ss_pred HHHHHHH
T ss_conf 9999997
No 10
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.48 E-value=1.3e+02 Score=11.84 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=0.0
Q ss_pred HHHHCCCCCCHHHHCHHHHHHHH
Q ss_conf 99923742201000249999999
Q gi|254781185|r 16 LVLSGCSIGEQKKNNSVKKYFNK 38 (42)
Q Consensus 16 lvlsgcsigeqkknnsvkkyfnk 38 (42)
||.|-||+-.+.-..-|++..++
T Consensus 226 lvYsTCS~~~~ENE~vv~~~l~~ 248 (284)
T d1sqga2 226 LVYATCSVLPEENSLQIKAFLQR 248 (284)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHH
T ss_pred EEEEEECCCHHHCHHHHHHHHHH
T ss_conf 77764058622289999999985
Done!