RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781185|ref|YP_003065598.1| hypothetical protein
CLIBASIA_05460 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>gnl|CDD|163209 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
          Members of this protein family include YfiO, a
          near-essential protein of the outer membrane, part of a
          complex involved in protein insertion into the
          bacterial outer membrane. Many proteins in this family
          are annotated as ComL, based on the involvement of this
          protein in natural transformation with exogenous DNA in
          Neisseria gonorrhoeae. This protein family shows
          sequence similarity to, but is distinct from, the
          tol-pal system protein YbgF (TIGR02795).
          Length = 235

 Score = 31.0 bits (71), Expect = 0.072
 Identities = 7/34 (20%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 10 IIFGLVLVLSGCSIGEQKKNN-----SVKKYFNK 38
          ++  L+L+L+GCS  ++K+ +       ++ + +
Sbjct: 6  LLLALLLLLAGCSSKKKKEADPVEEWPAEELYEE 39


>gnl|CDD|184569 PRK14212, PRK14212, camphor resistance protein CrcB; Provisional.
          Length = 128

 Score = 28.6 bits (64), Expect = 0.37
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 5   NIGINIIFGLVLVLSGCSIGEQKKNNS 31
           NI  N++ GL++V  G  +G   K NS
Sbjct: 102 NILANVLLGLLMVFIGAYLGSLLKQNS 128


>gnl|CDD|149279 pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid
          attachment site.  In prokaryotes, membrane lipoproteins
          are synthesized with a precursor signal peptide, which
          is cleaved by a specific lipoprotein signal peptidase
          (signal peptidase II). The peptidase recognizes a
          conserved sequence and cuts upstream of a cysteine
          residue to which a glyceride-fatty acid lipid is
          attached.
          Length = 19

 Score = 24.8 bits (56), Expect = 5.0
 Identities = 4/15 (26%), Positives = 11/15 (73%)

Query: 8  INIIFGLVLVLSGCS 22
          + ++   +L+L+GC+
Sbjct: 4  LLLLLLALLLLAGCA 18


>gnl|CDD|182215 PRK10060, PRK10060, RNase II stability modulator; Provisional.
          Length = 663

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 13  GLVLVLSGCSIG 24
           GL+ V +GCSIG
Sbjct: 348 GLIEVYTGCSIG 359


>gnl|CDD|151401 pfam10954, DUF2755, Protein of unknown function (DUF2755).  Some
          members in this family of proteins are annotated as
          YaiY however no function is known. The family appears
          to be restricted to Enterobacteriaceae.
          Length = 100

 Score = 24.4 bits (53), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 2  VSKNIGINIIFGLVLVLSGCSI 23
          V   +G+  IFGL+  L GC I
Sbjct: 65 VEIGLGVGTIFGLIPFLIGCLI 86


>gnl|CDD|182698 PRK10750, PRK10750, potassium transporter; Provisional.
          Length = 483

 Score = 23.6 bits (51), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 8   INIIFGLVLVLSGCSIG 24
           IN I  + L++SGC+ G
Sbjct: 238 INTIIAIFLLISGCNYG 254


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.140    0.385 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 604,251
Number of extensions: 20596
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)