Query         gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:36:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781186.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3kz5_E Protein SOPB; partition  20.3      29  0.0012   16.9   1.1   15    2-16      7-21  (52)
  2 1ci4_A Protein (barrier-TO-aut  13.3      66  0.0028   15.1   1.5   27   14-40     23-49  (89)
  3 1b22_A DNA repair protein RAD5   8.7      59  0.0025   15.4  -0.0   25   14-38     30-54  (114)
  4 2inp_L Phenol hydroxylase comp   7.7      67  0.0028   15.1  -0.1   40    4-43     24-63  (89)
  5 2mob_A Protein (methane monoox   7.4      47   0.002   15.9  -1.0   40    4-43     62-101 (138)
  6 1ckv_A Protein (protein B); hy   6.9 1.1E+02  0.0046   14.0   0.7   40    5-44     64-103 (141)
  7 2qkw_A Avirulence protein; thr   5.4   1E+02  0.0042   14.2  -0.2   28    1-28     11-39  (164)
  8 1mzu_A PPR; photoactive yellow   5.3   2E+02  0.0086   12.6   1.6   34    6-40     31-66  (129)
  9 1u8x_X Maltose-6'-phosphate gl   3.1   3E+02   0.012   11.8   0.7   22    4-25    160-182 (472)
 10 2k7m_A GAP junction alpha-5 pr   3.0 3.2E+02   0.014   11.6   0.8   11    1-11     38-48  (109)

No 1  
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=20.29  E-value=29  Score=16.89  Aligned_cols=15  Identities=47%  Similarity=0.837  Sum_probs=12.6

Q ss_pred             CCCCCCCEEEEEECC
Q ss_conf             844368779998346
Q gi|254781186|r    2 AHQYNPDAIVLYANG   16 (45)
Q Consensus         2 ahqynpdaivlyang   16 (45)
                      .||+-|.|.+||...
T Consensus         7 rhqFaPGAtalYKGd   21 (52)
T 3kz5_E            7 RHQFAPGATVLYKGD   21 (52)
T ss_dssp             EEEEETTEEEEEETT
T ss_pred             CCCCCCCCEEEEECC
T ss_conf             232068723566177


No 2  
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=13.33  E-value=66  Score=15.13  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             ECCCHHHHHHHHHCCCCCHHHHHHCCH
Q ss_conf             346012237676408824799983002
Q gi|254781186|r   14 ANGIGAVTANYLENLNYSPIEKILGQR   40 (45)
Q Consensus        14 angigavtanylenlnyspiekilgqr   40 (45)
                      -.|||.+-+.-|++-.|.---..|||-
T Consensus        23 l~GIG~~lg~~L~~kGfdKAy~vLGqf   49 (89)
T 1ci4_A           23 LAGIGEVLGKKLEERGFDKAYVVLGQF   49 (89)
T ss_dssp             STTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             478648999999985853999999999


No 3  
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=8.75  E-value=59  Score=15.38  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             ECCCHHHHHHHHHCCCCCHHHHHHC
Q ss_conf             3460122376764088247999830
Q gi|254781186|r   14 ANGIGAVTANYLENLNYSPIEKILG   38 (45)
Q Consensus        14 angigavtanylenlnyspiekilg   38 (45)
                      ..|||+.++.-|.+-.|..|++|+-
T Consensus        30 ~~Gvg~~~i~KL~~aG~~Tv~~Ia~   54 (114)
T 1b22_A           30 QCGINANDVKKLEEAGFHTVEAVAY   54 (114)
T ss_dssp             HTTCSHHHHHHHHTTCCSSGGGBTS
T ss_pred             HCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf             6899999999999969744999984


No 4  
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=7.75  E-value=67  Score=15.09  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=28.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHCCHHHC
Q ss_conf             4368779998346012237676408824799983002321
Q gi|254781186|r    4 QYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV   43 (45)
Q Consensus         4 qynpdaivlyangigavtanylenlnyspiekilgqrssv   43 (45)
                      +-||++.|.+-.+.=-+.+.----++...||..||+.-.+
T Consensus        24 ~dNP~~~V~d~~a~vrI~a~g~l~i~r~tieE~lGr~~~~   63 (89)
T 2inp_L           24 EDNPDAEMQHQPAMIRIQAEKRLVINRETMEEKLGRDWDV   63 (89)
T ss_dssp             SSCTTCEEEEETTEEEEECBSEEEECHHHHHHHHTSCCCG
T ss_pred             HHCCCCEEEECCCEEEEECCCEEEEEHHHHHHHHCCCCCH
T ss_conf             5897979982587899903984999878979985898617


No 5  
>2mob_A Protein (methane monooxygenase regulatory protein B); oxidoreductase, methane oxidation; NMR {Methylosinus trichosporium} SCOP: d.137.1.1
Probab=7.41  E-value=47  Score=15.88  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHCCHHHC
Q ss_conf             4368779998346012237676408824799983002321
Q gi|254781186|r    4 QYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV   43 (45)
Q Consensus         4 qynpdaivlyangigavtanylenlnyspiekilgqrssv   43 (45)
                      .-||++.|-+..+.=-+.+.----++..-||..||+.-.+
T Consensus        62 ~DNP~~~V~drpa~vRIda~g~L~i~retIeE~LGR~~d~  101 (138)
T 2mob_A           62 AKNPSIVVEDKAGFWWIKADGAIEIDAAEAGELLGKPFSV  101 (138)
T ss_dssp             HTSSCCEEEECSSCEEEEESSEEEEECHHHHHHTCSTHHH
T ss_pred             CCCCCEEEEECCCEEEEECCCEEEEEHHHHHHHHCCCCCH
T ss_conf             4599869970587799904982998788989985898738


No 6  
>1ckv_A Protein (protein B); hydroxylase regulatory protein; NMR {Escherichia coli} SCOP: d.137.1.1
Probab=6.94  E-value=1.1e+02  Score=14.02  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHCCHHHCC
Q ss_conf             3687799983460122376764088247999830023217
Q gi|254781186|r    5 YNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVA   44 (45)
Q Consensus         5 ynpdaivlyangigavtanylenlnyspiekilgqrssva   44 (45)
                      -||++.|.+..+.=-+.+.----++..-||..||+.-.+.
T Consensus        64 ~nP~~~V~dr~ayvRI~a~g~L~i~retIeE~LGR~~d~~  103 (141)
T 1ckv_A           64 VNPTVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNVY  103 (141)
T ss_dssp             TCSCCEEEECSSSEEEEESSEEEECSSHHHHHTTTTCCST
T ss_pred             CCCCEEEEECCCEEEEECCCEEEEEHHHHHHHHCCCCCHH
T ss_conf             8995699835877999139839987889899858977389


No 7  
>2qkw_A Avirulence protein; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Pseudomonas syringae} SCOP: a.8.8.1 PDB: 1r5e_A
Probab=5.43  E-value=1e+02  Score=14.20  Aligned_cols=28  Identities=36%  Similarity=0.433  Sum_probs=14.2

Q ss_pred             CCCCCC-CCEEEEEECCCHHHHHHHHHCC
Q ss_conf             984436-8779998346012237676408
Q gi|254781186|r    1 MAHQYN-PDAIVLYANGIGAVTANYLENL   28 (45)
Q Consensus         1 mahqyn-pdaivlyangigavtanylenl   28 (45)
                      ||||-| ||-.---++.-.-||..-|-|+
T Consensus        11 MAHQVNSPDRvsNnsgd~n~vt~~qllnv   39 (164)
T 2qkw_A           11 MAHQVNSPDRVSNNSGDEDNVTSSQLLSV   39 (164)
T ss_dssp             ------------------CCCCHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             65533884314567898665468999999


No 8  
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=5.31  E-value=2e+02  Score=12.64  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             CCCEEEEEE-CC-CHHHHHHHHHCCCCCHHHHHHCCH
Q ss_conf             687799983-46-012237676408824799983002
Q gi|254781186|r    6 NPDAIVLYA-NG-IGAVTANYLENLNYSPIEKILGQR   40 (45)
Q Consensus         6 npdaivlya-ng-igavtanylenlnyspiekilgqr   40 (45)
                      -|++|++.- .| |-.+.....+-+.|+| |.++|+.
T Consensus        31 ~p~Gv~~~D~dg~I~~~N~aa~~ilG~s~-eeliGr~   66 (129)
T 1mzu_A           31 LPVGAIQVDGSGVIHRYNRTESRLSGRIP-ERVIGRN   66 (129)
T ss_dssp             CSSEEEEEETTCBEEEECHHHHHHHCCCH-HHHTTSB
T ss_pred             CCCEEEEECCCCCEEEECHHHHHHHCCCH-HHHCCCC
T ss_conf             99069999899979999489999978497-9986994


No 9  
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=3.10  E-value=3e+02  Score=11.82  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=15.6

Q ss_pred             CCCCCEEEE-EECCCHHHHHHHH
Q ss_conf             436877999-8346012237676
Q gi|254781186|r    4 QYNPDAIVL-YANGIGAVTANYL   25 (45)
Q Consensus         4 qynpdaivl-yangigavtanyl   25 (45)
                      +|.|||+++ |+|-.+.+|---.
T Consensus       160 e~~PdAwllNyTNP~~ivt~al~  182 (472)
T 1u8x_X          160 KYSPDAWMLNYSNPAAIVAEATR  182 (472)
T ss_dssp             HHCTTCEEEECCSCHHHHHHHHH
T ss_pred             HHCCCEEEEEECCHHHHHHHHHH
T ss_conf             66998499981786899999999


No 10 
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=3.05  E-value=3.2e+02  Score=11.63  Aligned_cols=11  Identities=36%  Similarity=0.706  Sum_probs=7.7

Q ss_pred             CCCCCCCCEEE
Q ss_conf             98443687799
Q gi|254781186|r    1 MAHQYNPDAIV   11 (45)
Q Consensus         1 mahqynpdaiv   11 (45)
                      ||||-|+|..+
T Consensus        38 masqqN~dnla   48 (109)
T 2k7m_A           38 MGSRKNPDPLA   48 (109)
T ss_dssp             TSSCSCCCSSS
T ss_pred             HHHCCCCCCHH
T ss_conf             55103742012


Done!