RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781186|ref|YP_003065599.1| hypothetical protein
CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>gnl|CDD|32422 COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism].
          Length = 210

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 3   HQYNPDAIV--LYANGIGAVTANYLENLNYSPIEKILGQRSS 42
             + P  I   L  NGIG      LENL Y P E+I    + 
Sbjct: 149 DDFGPAEIAKLLTENGIGDSRVTVLENLGY-PDERITDGTAE 189


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0786    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 516,335
Number of extensions: 15868
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 4
Length of query: 45
Length of database: 6,263,737
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,874,775
Effective search space: 158618925
Effective search space used: 158618925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)