RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781186|ref|YP_003065599.1| hypothetical protein
CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of
          multifunctional peroxisomal
          hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 154

 Score = 25.5 bits (55), Expect = 1.4
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 3  HQYNPDAIVLYANGIGAVTANYLE 26
          + Y     ++YA G+GA   +  +
Sbjct: 11 YAYTELEAIMYALGVGASIKDPKD 34


>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 23.1 bits (50), Expect = 7.4
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 12 LYANGIGAVTANYLENLNYSPIEKIL 37
          L   GI A     LE   +  +E + 
Sbjct: 13 LEQCGINANDVKKLEEAGFHTVEAVA 38


>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
           {Thermotoga maritima [TaxId: 2336]}
          Length = 334

 Score = 22.9 bits (48), Expect = 7.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 3   HQYNPDAIVLYANGIGAVTANYLEN 27
             +NP+ I +  NG+  V  +Y ++
Sbjct: 216 LVWNPEYIFIDENGLSLVLDDYSKH 240


>d1pn2a1 d.38.1.4 (A:4-151) 2-enoyl-coa hydratase domain of
          multifunctional peroxisomal
          hydratase-dehydrogenase-epimerase {Yeast (Candida
          tropicalis) [TaxId: 5482]}
          Length = 148

 Score = 22.9 bits (49), Expect = 8.8
 Identities = 4/15 (26%), Positives = 9/15 (60%)

Query: 5  YNPDAIVLYANGIGA 19
          ++   ++LY   +GA
Sbjct: 6  FDDRDVILYNIALGA 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 161,643
Number of extensions: 4560
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 7
Length of query: 45
Length of database: 2,407,596
Length adjustment: 17
Effective length of query: 28
Effective length of database: 2,174,186
Effective search space: 60877208
Effective search space used: 60877208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)