RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62] (45 letters) >d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Score = 25.5 bits (55), Expect = 1.4 Identities = 6/24 (25%), Positives = 12/24 (50%) Query: 3 HQYNPDAIVLYANGIGAVTANYLE 26 + Y ++YA G+GA + + Sbjct: 11 YAYTELEAIMYALGVGASIKDPKD 34 >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Score = 23.1 bits (50), Expect = 7.4 Identities = 7/26 (26%), Positives = 10/26 (38%) Query: 12 LYANGIGAVTANYLENLNYSPIEKIL 37 L GI A LE + +E + Sbjct: 13 LEQCGINANDVKKLEEAGFHTVEAVA 38 >d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189 {Thermotoga maritima [TaxId: 2336]} Length = 334 Score = 22.9 bits (48), Expect = 7.9 Identities = 7/25 (28%), Positives = 14/25 (56%) Query: 3 HQYNPDAIVLYANGIGAVTANYLEN 27 +NP+ I + NG+ V +Y ++ Sbjct: 216 LVWNPEYIFIDENGLSLVLDDYSKH 240 >d1pn2a1 d.38.1.4 (A:4-151) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 148 Score = 22.9 bits (49), Expect = 8.8 Identities = 4/15 (26%), Positives = 9/15 (60%) Query: 5 YNPDAIVLYANGIGA 19 ++ ++LY +GA Sbjct: 6 FDDRDVILYNIALGA 20 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.131 0.369 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 161,643 Number of extensions: 4560 Number of successful extensions: 13 Number of sequences better than 10.0: 1 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 7 Length of query: 45 Length of database: 2,407,596 Length adjustment: 17 Effective length of query: 28 Effective length of database: 2,174,186 Effective search space: 60877208 Effective search space used: 60877208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 47 (22.5 bits)