BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781186|ref|YP_003065599.1| hypothetical protein
CLIBASIA_05465 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 45

 Score = 92.8 bits (229), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45
          MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD
Sbjct: 1  MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSVAD 45


>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 511

 Score = 42.4 bits (98), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 1   MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43
           +  +Y PDAI++ AN  GA T +YLE L Y  + ++LGQ+ +V
Sbjct: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAV 404


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,235
Number of Sequences: 1233
Number of extensions: 725
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 45
length of database: 328,796
effective HSP length: 18
effective length of query: 27
effective length of database: 306,602
effective search space:  8278254
effective search space used:  8278254
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)