HHsearch alignment for GI: 254781187 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=94.63 E-value=0.32 Score=26.47 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=64.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-------------------EEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 477614886788999999999999708997-------------------7999715379999999999999998623121
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGM-------------------SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~-------------------~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~ 139 (367)
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~--- 102 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS--- 102 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC---
T ss_conf 10037999997899999999996586643345520022444320256886599773213333006999999998604---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 12333321000123332211113457761266210135445565210113586289997545599889999898740698
Q gi|254781187|r 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 (367)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~ 219 (367)
T Consensus 103 --------------------------------------------~~~~~~~-~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 103 --------------------------------------------ESPLEGG-YKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred --------------------------------------------CCCCCCC-CEEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf --------------------------------------------4656677-2699973203269888876754332488
Q ss_pred CCEEEEEEEC
Q ss_conf 8258999807
Q gi|254781187|r 220 PNRFWIMTSN 229 (367)
Q Consensus 220 ~~~~~i~igN 229 (367)
T Consensus 138 ~~~~~il~~n 147 (325)
T COG0470 138 KNTRFILITN 147 (325)
T ss_pred CCEEEEEEEC
T ss_conf 8716999749