HHsearch alignment for GI: 254781187 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=97.39 E-value=0.0032 Score=38.77 Aligned_cols=159 Identities=14% Similarity=-0.023 Sum_probs=87.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH--HCCCCE-EEEECCCHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997--089977-9997153799999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--TRPGMS-IICIANSETQLKN 122 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~--~~~~~~-v~~~A~t~~Q~~~ 122 (367)
T Consensus 47 ~gf~~pt~IQ~~~iP~~l~g------------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Q 114 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAG------------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ 114 (513)
T ss_pred CCCCCCCHHHHHHCHHHHCC------------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
T ss_conf 59899898999658776369------------997998689871789999999999740045577756997799999999
Q ss_pred HHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 99999999998623-12112333321000123332211113457761266210135445565210113586289997545
Q gi|254781187|r 123 TLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 (367)
Q Consensus 123 ~lw~ei~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAs 201 (367)
T Consensus 115 i-~~~~~~~~~~~~~~~------~~~i~--GG~~~~~q~-~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 115 I-AEELRKLGKNLGGLR------VAVVY--GGVSIRKQI-EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred H-HHHHHHHHHHCCCCE------EEEEE--CCCCHHHHH-HHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 9-999999986245842------99998--998989999-9872499899979608999986488554650189967617
Q ss_pred CCCH-HHHHHHHHHHH--CCCCCEEEEE
Q ss_conf 5998-89999898740--6988258999
Q gi|254781187|r 202 GTPD-IINKSILGFFT--ELNPNRFWIM 226 (367)
Q Consensus 202 gI~d-~i~e~i~g~Lt--~~~~~~~~i~ 226 (367)
T Consensus 185 rmld~gf~~~i~~I~~~~p~~~qtllfS 212 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFS 212 (513)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6638876899999997389774899998