HHsearch alignment for GI: 254781187 and conserved domain: COG1110

>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=96.50  E-value=0.018  Score=34.07  Aligned_cols=109  Identities=22%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             47761488678899999999999970899779997153799999999999999986231211233332100012333221
Q gi|254781187|r   79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL  158 (367)
Q Consensus        79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (367)
T Consensus        99 SFaiiAPTGvGKTTfg~~~sl~~a~kg--kr~yii~PT~~Lv~Q~~-~kl~~~~e~~~~~--------~~~~~-yh~~l~  166 (1187)
T COG1110          99 SFAIIAPTGVGKTTFGLLMSLYLAKKG--KRVYIIVPTTTLVRQVY-ERLKKFAEDAGSL--------DVLVV-YHSALP  166 (1187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH-HHHHHHHHHCCCC--------CEEEE-ECCCCC
T ss_conf             448982788765479999999987558--74999966789999999-9999988653785--------24665-312366


Q ss_pred             -----CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             -----111345776126621013544556521011358628999754
Q gi|254781187|r  159 -----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA  200 (367)
Q Consensus       159 -----~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEA  200 (367)
T Consensus       167 ~~ekee~le~i~~gdfdI-litTs~FL~k~~e~L~~~kFdfifVDDV  212 (1187)
T COG1110         167 TKEKEEALERIESGDFDI-LITTSQFLSKRFEELSKLKFDFIFVDDV  212 (1187)
T ss_pred             HHHHHHHHHHHHCCCCCE-EEEEHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf             577999999986599639-9974787886699840457778998047