HHsearch alignment for GI: 254781187 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=96.50 E-value=0.018 Score=34.07 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47761488678899999999999970899779997153799999999999999986231211233332100012333221
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (367)
T Consensus 99 SFaiiAPTGvGKTTfg~~~sl~~a~kg--kr~yii~PT~~Lv~Q~~-~kl~~~~e~~~~~--------~~~~~-yh~~l~ 166 (1187)
T COG1110 99 SFAIIAPTGVGKTTFGLLMSLYLAKKG--KRVYIIVPTTTLVRQVY-ERLKKFAEDAGSL--------DVLVV-YHSALP 166 (1187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH-HHHHHHHHHCCCC--------CEEEE-ECCCCC
T ss_conf 448982788765479999999987558--74999966789999999-9999988653785--------24665-312366
Q ss_pred -----CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf -----111345776126621013544556521011358628999754
Q gi|254781187|r 159 -----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 (367)
Q Consensus 159 -----~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEA 200 (367)
T Consensus 167 ~~ekee~le~i~~gdfdI-litTs~FL~k~~e~L~~~kFdfifVDDV 212 (1187)
T COG1110 167 TKEKEEALERIESGDFDI-LITTSQFLSKRFEELSKLKFDFIFVDDV 212 (1187)
T ss_pred HHHHHHHHHHHHCCCCCE-EEEEHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 577999999986599639-9974787886699840457778998047