HHsearch alignment for GI: 254781187 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=98.16 E-value=5.4e-05 Score=49.61 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
T Consensus 13 ~ie~R~YQ~~i~a~al~---~----------NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~-~~ 77 (542)
T COG1111 13 TIEPRLYQLNIAAKALF---K----------NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHA-EF 77 (542)
T ss_pred CCCHHHHHHHHHHHHHH---C----------CEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHH-HH
T ss_conf 32588999999999864---4----------83899528750799999999999874588-4899658951799999-99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCC-CCCCCCCEEEEECCC-CCC
Q ss_conf 9999986231211233332100012333221111345776-1266210135445565210-113586289997545-599
Q gi|254781187|r 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-HYTITCRTYSEERPDTFVG-PHNTHGMAVFNDEAS-GTP 204 (367)
Q Consensus 128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ea~~g-~h~~~~~l~ivDEAs-gI~ 204 (367)
T Consensus 78 ~~~v~~ip~~~-i~~lt-Gev~p-------~~R~~~w~~~kVfvaTPQvve--N-Dl~~Grid~~dv~~lifDEAHRAvG 145 (542)
T COG1111 78 CRKVTGIPEDE-IAALT-GEVRP-------EEREELWAKKKVFVATPQVVE--N-DLKAGRIDLDDVSLLIFDEAHRAVG 145 (542)
T ss_pred HHHHHCCCHHH-EEEEC-CCCCH-------HHHHHHHHHCCEEEECCHHHH--H-HHHCCCCCHHHCEEEEECHHHHCCC
T ss_conf 99985898433-23111-77786-------889998751778995638777--6-8761766767805898623554137
Q ss_pred HHHH-HHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 8899-998987406988258999807899987688754
Q gi|254781187|r 205 DIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 (367)
Q Consensus 205 d~i~-e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~ 241 (367)
T Consensus 146 nyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 146 NYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 60699999999982568437987238999879999999