HHsearch alignment for GI: 254781187 and conserved domain: COG1111

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=98.16  E-value=5.4e-05  Score=49.61  Aligned_cols=167  Identities=13%  Similarity=0.075  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             66842899999998888751245555541124776148867889999999999997089977999715379999999999
Q gi|254781187|r   48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE  127 (367)
Q Consensus        48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e  127 (367)
T Consensus        13 ~ie~R~YQ~~i~a~al~---~----------NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~-~~   77 (542)
T COG1111          13 TIEPRLYQLNIAAKALF---K----------NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHA-EF   77 (542)
T ss_pred             CCCHHHHHHHHHHHHHH---C----------CEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHH-HH
T ss_conf             32588999999999864---4----------83899528750799999999999874588-4899658951799999-99


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCC-CCCCCCCEEEEECCC-CCC
Q ss_conf             9999986231211233332100012333221111345776-1266210135445565210-113586289997545-599
Q gi|254781187|r  128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-HYTITCRTYSEERPDTFVG-PHNTHGMAVFNDEAS-GTP  204 (367)
Q Consensus       128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ea~~g-~h~~~~~l~ivDEAs-gI~  204 (367)
T Consensus        78 ~~~v~~ip~~~-i~~lt-Gev~p-------~~R~~~w~~~kVfvaTPQvve--N-Dl~~Grid~~dv~~lifDEAHRAvG  145 (542)
T COG1111          78 CRKVTGIPEDE-IAALT-GEVRP-------EEREELWAKKKVFVATPQVVE--N-DLKAGRIDLDDVSLLIFDEAHRAVG  145 (542)
T ss_pred             HHHHHCCCHHH-EEEEC-CCCCH-------HHHHHHHHHCCEEEECCHHHH--H-HHHCCCCCHHHCEEEEECHHHHCCC
T ss_conf             99985898433-23111-77786-------889998751778995638777--6-8761766767805898623554137


Q ss_pred             HHHH-HHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             8899-998987406988258999807899987688754
Q gi|254781187|r  205 DIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF  241 (367)
Q Consensus       205 d~i~-e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~  241 (367)
T Consensus       146 nyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~  183 (542)
T COG1111         146 NYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVV  183 (542)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             60699999999982568437987238999879999999