HHsearch alignment for GI: 254781187 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=97.68 E-value=0.0023 Score=39.66 Aligned_cols=158 Identities=16% Similarity=0.060 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998888751245555541124776148867889999999999997089977999715379999999999999998623
Q gi|254781187|r 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 (367)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~ 136 (367)
T Consensus 31 el~~~qq~av~~~~~~-~---~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~-~~~~~~~~~Gi 104 (766)
T COG1204 31 ELFNPQQEAVEKGLLS-D---ENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKY-EEFSRLEELGI 104 (766)
T ss_pred HHHHHHHHHHHCCCCC-C---CCEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHH-HHHHHHHHCCC
T ss_conf 7557899874111257-9---8679976788866999999999999855-983899907599999999-98666886597
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC------CCCCCEEEEECCCCCCHH----
Q ss_conf 1211233332100012333221111345776126621013544556521011------358628999754559988----
Q gi|254781187|r 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH------NTHGMAVFNDEASGTPDI---- 206 (367)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h------~~~~~l~ivDEAsgI~d~---- 206 (367)
T Consensus 105 ------------rV~~~TgD~~~~~~~l~~~~-ViVt------T~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 105 ------------RVGISTGDYDLDDERLARYD-VIVT------TPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred ------------EEEEECCCCCCCHHHHCCCC-EEEE------CHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCC
T ss_conf ------------79996488655533414588-7997------4678667650675333401689994210148756586
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 999989874069882589998078999876887
Q gi|254781187|r 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye 239 (367)
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~ 198 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLPNAEEVAD 198 (766)
T ss_pred EEHHHHHHHHHHCCCEEEEEEEEECCCHHHHHH
T ss_conf 402279888852755179887311688899999