HHsearch alignment for GI: 254781187 and conserved domain: COG1875

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].
Probab=96.94  E-value=0.0015  Score=40.71  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             899999998888751245555541124776148867889999999999997089-9779997153799999999999999
Q gi|254781187|r   53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKW  131 (367)
Q Consensus        53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~lw~ei~k~  131 (367)
T Consensus       231 ~eQ~~ALdlLld----------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGf------  294 (436)
T COG1875         231 AEQRVALDLLLD----------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGF------  294 (436)
T ss_pred             HHHHHHHHHHCC----------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCC------
T ss_conf             888888998638----------7778488633577667699999899999877543027883377677531376------


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCC--CCEEEEECCCCCC
Q ss_conf             98623121123333210001233322----1111345776126621013-544556521011358--6289997545599
Q gi|254781187|r  132 LSMLPHRHWFEMQSLSLHPSGWYAEL----LEQSMGIDSKHYTITCRTY-SEERPDTFVGPHNTH--GMAVFNDEASGTP  204 (367)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~-~~~~~ea~~g~h~~~--~~l~ivDEAsgI~  204 (367)
T Consensus       295 ---LP-------G~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT  364 (436)
T COG1875         295 ---LP-------GTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT  364 (436)
T ss_pred             ---CC-------CCHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEEEHHHCCC
T ss_conf             ---88-------84366506157676667998726665536789988741542566520131665553069971212178


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHH
Q ss_conf             889999898740698825899980789998768
Q gi|254781187|r  205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF  237 (367)
Q Consensus       205 d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~F  237 (367)
T Consensus       365 pheikTilt-R~G~GsK--IVl~gd~aQiD~~y  394 (436)
T COG1875         365 PHELKTILT-RAGEGSK--IVLTGDPAQIDTPY  394 (436)
T ss_pred             HHHHHHHHH-HHCCCCE--EEEECCHHHCCCCC
T ss_conf             888899987-6069977--99808988827754