HHsearch alignment for GI: 254781187 and conserved domain: COG3972
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=96.29 E-value=0.018 Score=34.08 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=66.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHH-H-------HHHHCCCCCCCCCCCCCCCC
Q ss_conf 614886788999999999999708997799971537---999999999999-9-------99862312112333321000
Q gi|254781187|r 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVS-K-------WLSMLPHRHWFEMQSLSLHP 150 (367)
Q Consensus 82 v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~---~Q~~~~lw~ei~-k-------~~~~~~~~~~~~~~~~~~~~ 150 (367)
T Consensus 181 IrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv-~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~ 259 (660)
T COG3972 181 IRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLV-PEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYG 259 (660)
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 2002478730298877789744799863899866678889999999-999998862488724268884357878886038
Q ss_pred -CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf -123332211113457761266210135445565210113-58628999754559988999989874069882589
Q gi|254781187|r 151 -SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 (367)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~-~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~ 224 (367)
T Consensus 260 ~~~~~~~~~~~~fsg~g-------~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP~~F~~Lcf~~tk-d~Krlvy 327 (660)
T COG3972 260 MYRYICHYYEIPFSGFG-------NGFDAACKELIADINNKKAYDYILIDESQDFPQSFIDLCFMVTK-DKKRLVY 327 (660)
T ss_pred HHHHHHCCCCCCCCCCC-------CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHC-CCCEEEE
T ss_conf 89998426654547877-------40679999999864256423179942455477899999999824-7543898