HHsearch alignment for GI: 254781187 and conserved domain: COG4373
>COG4373 Mu-like prophage FluMu protein gp28 [General function prediction only].
Probab=98.84 E-value=2.5e-07 Score=63.96 Aligned_cols=236 Identities=19% Similarity=0.238 Sum_probs=144.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47761488678899999999999970---899779997153799999999999999986231211233332100012333
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLIST---RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~---~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (367)
T Consensus 31 kIAEKS-RRtGlTwaeA~~dV~~Aak~k~eGG~dVfy~gs~~emArEyI-~acamwar~fN~------~A~d~~E~~f~d 102 (509)
T COG4373 31 KIAEKS-RRTGLTWAEAYEDVRDAAKPKREGGMDVFYSGSDLEMAREYI-RACAMWARIFNV------VATDLGEVVFED 102 (509)
T ss_pred EHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHH------HHHHHHHHHHCC
T ss_conf 153530-102642888777898752112258852588447489999999-999999999988------877777876447
Q ss_pred C---CCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC--HHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 2---21111-3457761266210135445565210113586289997545599--8899998987406988258999807
Q gi|254781187|r 156 E---LLEQS-MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSN 229 (367)
Q Consensus 156 ~---~~~~~-~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~--d~i~e~i~g~Lt~~~~~~~~i~igN 229 (367)
T Consensus 103 ~dk~~Iltyvi~FasGf-kI~A---LSSnPknlRg~qG~----VviDEaAFHE~ldEllkAA~a-ltmWGa~vR--viSt 171 (509)
T COG4373 103 SDKSAILTYVIAFASGF-KITA---LSSNPKNLRGKQGK----VVIDEAAFHEDLDELLKAAAA-LTMWGAPVR--VIST 171 (509)
T ss_pred CCHHHHHHHHEEECCCC-EEEE---CCCCCCCCCCCCCC----EEEEHHHHHHHHHHHHHHHHH-HHHCCCCEE--EEEC
T ss_conf 87565567303204774-6766---04797455467884----886236656539999998778-765177248--9962
Q ss_pred CCCCCCHHHHHHHC---CCCCEEEEEECCCC------------------CCCCCHHHHHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 89998768875411---22350467523332------------------8888988999999621688000268886443
Q gi|254781187|r 230 TRRLNGWFYDIFNI---PLEDWKRYQIDTRT------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 (367)
Q Consensus 230 P~r~~g~Fye~~~~---~~~~w~~~~~~~~d------------------~p~~~~~~i~~~~~~~gedS~~~r~ev~G~F 288 (367)
T Consensus 172 HNGvDnlFnQ~iQear~grk~ysvH~iTldDAiadGLy~RIc~v~~~~w~pE~Ea~w~a~l~~~a~t~-eda~eEy~C~- 249 (509)
T COG4373 172 HNGVDNLFNQMIQEARQGRKKYSVHSITLDDAIADGLYERICNVDRPAWAPEVEAKWLAELRAIAGTD-EDAQEEYMCN- 249 (509)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHCCC-
T ss_conf 68701789999999870255531788865777777899999826774567567889999888656981-4457762877-
Q ss_pred CCCCCCEEECHHHHHHHHCCCCCC------------------------------------CCCCCEEEEEECCCCCCCEE
Q ss_conf 277898078299986443157777------------------------------------88984899996387788108
Q gi|254781187|r 289 PQQEVNNFIPHNYIEEAMSREAID------------------------------------DLYAPLIMGCDIAGEGGDKT 332 (367)
Q Consensus 289 p~~~~d~~ip~~~ie~a~~~~~~~------------------------------------~~~~p~viGvDvAr~G~D~T 332 (367)
T Consensus 250 Pk~s~gAYIphalie~a~~~~vp~l~fe~~~~f~~~~~~~r~~~~~~~cl~~l~P~Lqalnp~~r~~fGvDfaR~-~DLs 328 (509)
T COG4373 250 PKDSTGAYIPHALIEAAVAAEVPDLIFELGSEFHDIPAWLRESEVLTWCLPDLRPALQALNPGGRLYFGVDFARK-RDLS 328 (509)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCE
T ss_conf 566776646678999887547985179757455423566424566665344356898732999716521220225-6734
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254781187|r 333 VVVF 336 (367)
Q Consensus 333 vi~~ 336 (367)
T Consensus 329 v~~v 332 (509)
T COG4373 329 VLWV 332 (509)
T ss_pred EEEE
T ss_conf 9998